Metagenome / Metatranscriptome Family F068469

Basic Information
Family ID	F068469
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	79 residues
Representative Sequence	VKGNDKPAILAALISSNNKVWGEFYMHPLKTNMRLATAAAAQARGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIE
Number of Associated Samples	74
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.83 %
% of genes near scaffold ends (potentially truncated)	79.84 %
% of genes from short scaffolds (< 2000 bps)	87.90 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Most Common Taxonomy
Group	Unclassified (93.548 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton (31.452 % of family members)
Environment Ontology (ENVO)	Unclassified (36.290 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (39.516 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.83% β-sheet: 0.00% Coil/Unstructured: 47.17%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF05970	PIF1	53.23
PF14214	Helitron_like_N	2.42

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0507	ATPase/5Ã¢â‚¬â„¢-3Ã¢â‚¬â„¢ helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	53.23

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
All Organisms	root	All Organisms	6.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
cellular organisms	root	All Organisms → cellular organisms	6.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	6.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
Ochrophyta	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
Bacillariophyta	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	0.81 %
Fragilariophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Fragilariophyceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
Thalassiosirophycidae	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae	0.81 %
Fragilariophycidae	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Fragilariophyceae → Fragilariophycidae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
Rhabdonematales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Fragilariophyceae → Fragilariophycidae → Rhabdonematales	0.81 %
Thalassiosirales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
Grammatophoraceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Fragilariophyceae → Fragilariophycidae → Rhabdonematales → Grammatophoraceae	0.81 %
Thalassiosiraceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
Grammatophora	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Fragilariophyceae → Fragilariophycidae → Rhabdonematales → Grammatophoraceae → Grammatophora	0.81 %
Thalassiosira	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.55 %
Grammatophora oceanica	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Fragilariophyceae → Fragilariophycidae → Rhabdonematales → Grammatophoraceae → Grammatophora → Grammatophora oceanica	0.81 %
Thalassiosira pseudonana	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	0.81 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352003\|2199745350	Not Available	3737	Open in IMG/M
3300001275\|B570J13894_1010767	Not Available	890	Open in IMG/M
3300002299\|B570J29632_101859	All Organisms → cellular organisms → Eukaryota	937	Open in IMG/M
3300005525\|Ga0068877_10742141	Not Available	522	Open in IMG/M
3300005585\|Ga0049084_10300208	Not Available	533	Open in IMG/M
3300005942\|Ga0070742_10028570	Not Available	1492	Open in IMG/M
3300007543\|Ga0102853_1008333	Not Available	1612	Open in IMG/M
3300007543\|Ga0102853_1019393	Not Available	1111	Open in IMG/M
3300007548\|Ga0102877_1126047	Not Available	727	Open in IMG/M
3300007550\|Ga0102880_1164971	Not Available	579	Open in IMG/M
3300007558\|Ga0102822_1045807	Not Available	1039	Open in IMG/M
3300007558\|Ga0102822_1097765	Not Available	691	Open in IMG/M
3300007559\|Ga0102828_1184890	Not Available	530	Open in IMG/M
3300007561\|Ga0102914_1259050	Not Available	532	Open in IMG/M
3300007585\|Ga0102916_1183884	Not Available	567	Open in IMG/M
3300007636\|Ga0102856_1048010	Not Available	672	Open in IMG/M
3300007649\|Ga0102912_1035827	Not Available	1449	Open in IMG/M
3300007649\|Ga0102912_1041224	Not Available	1345	Open in IMG/M
3300007670\|Ga0102862_1160362	Not Available	577	Open in IMG/M
3300007706\|Ga0102899_1089277	Not Available	747	Open in IMG/M
3300007718\|Ga0102852_1012314	All Organisms → cellular organisms → Eukaryota	1514	Open in IMG/M
3300007860\|Ga0105735_1065583	Not Available	734	Open in IMG/M
3300007860\|Ga0105735_1115505	Not Available	577	Open in IMG/M
3300007861\|Ga0105736_1060666	Not Available	773	Open in IMG/M
3300007861\|Ga0105736_1148281	Not Available	535	Open in IMG/M
3300007861\|Ga0105736_1149795	Not Available	533	Open in IMG/M
3300007861\|Ga0105736_1149879	Not Available	533	Open in IMG/M
3300007953\|Ga0105738_1058177	Not Available	640	Open in IMG/M
3300007955\|Ga0105740_1077039	Not Available	563	Open in IMG/M
3300008107\|Ga0114340_1013577	Not Available	3960	Open in IMG/M
3300008115\|Ga0114348_1113040	Not Available	588	Open in IMG/M
3300008117\|Ga0114351_1023668	Not Available	6063	Open in IMG/M
3300008121\|Ga0114356_1524322	Not Available	558	Open in IMG/M
3300008122\|Ga0114359_1211350	Not Available	688	Open in IMG/M
3300008258\|Ga0114840_1040125	Not Available	752	Open in IMG/M
3300008263\|Ga0114349_1004907	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	7002	Open in IMG/M
3300008263\|Ga0114349_1012691	All Organisms → cellular organisms → Eukaryota	4239	Open in IMG/M
3300008263\|Ga0114349_1079913	Not Available	1489	Open in IMG/M
3300008263\|Ga0114349_1121212	Not Available	1098	Open in IMG/M
3300008263\|Ga0114349_1137150	Not Available	997	Open in IMG/M
3300008263\|Ga0114349_1185111	Not Available	776	Open in IMG/M
3300008263\|Ga0114349_1200441	Not Available	721	Open in IMG/M
3300008263\|Ga0114349_1221939	Not Available	653	Open in IMG/M
3300008263\|Ga0114349_1236830	Not Available	611	Open in IMG/M
3300008263\|Ga0114349_1240160	Not Available	602	Open in IMG/M
3300008263\|Ga0114349_1249489	Not Available	577	Open in IMG/M
3300008263\|Ga0114349_1253473	Not Available	567	Open in IMG/M
3300008263\|Ga0114349_1254969	Not Available	563	Open in IMG/M
3300008263\|Ga0114349_1267709	Not Available	533	Open in IMG/M
3300008263\|Ga0114349_1278473	Not Available	514	Open in IMG/M
3300008265\|Ga0114361_1018685	Not Available	2544	Open in IMG/M
3300008265\|Ga0114361_1025225	Not Available	2082	Open in IMG/M
3300008265\|Ga0114361_1033059	Not Available	1735	Open in IMG/M
3300008265\|Ga0114361_1044068	Not Available	1435	Open in IMG/M
3300008265\|Ga0114361_1074604	Not Available	1054	Open in IMG/M
3300008265\|Ga0114361_1094963	Not Available	925	Open in IMG/M
3300008265\|Ga0114361_1097050	Not Available	914	Open in IMG/M
3300008265\|Ga0114361_1103723	Not Available	882	Open in IMG/M
3300008265\|Ga0114361_1114481	Not Available	837	Open in IMG/M
3300008265\|Ga0114361_1144750	Not Available	742	Open in IMG/M
3300008265\|Ga0114361_1149157	Not Available	730	Open in IMG/M
3300008265\|Ga0114361_1157818	Not Available	708	Open in IMG/M
3300008265\|Ga0114361_1184985	Not Available	650	Open in IMG/M
3300008265\|Ga0114361_1188874	Not Available	643	Open in IMG/M
3300008265\|Ga0114361_1213905	Not Available	599	Open in IMG/M
3300008265\|Ga0114361_1245615	Not Available	552	Open in IMG/M
3300008265\|Ga0114361_1262366	Not Available	530	Open in IMG/M
3300008996\|Ga0102831_1027116	Not Available	1948	Open in IMG/M
3300009002\|Ga0102810_1096778	Not Available	921	Open in IMG/M
3300009003\|Ga0102813_1143984	Not Available	745	Open in IMG/M
3300009026\|Ga0102829_1142938	Not Available	763	Open in IMG/M
3300009056\|Ga0102860_1057308	Not Available	1054	Open in IMG/M
3300009056\|Ga0102860_1220985	Not Available	545	Open in IMG/M
3300009080\|Ga0102815_10818586	Not Available	530	Open in IMG/M
3300011009\|Ga0129318_10163779	Not Available	687	Open in IMG/M
3300011010\|Ga0139557_1018610	Not Available	1286	Open in IMG/M
3300020160\|Ga0211733_10867611	Not Available	1011	Open in IMG/M
3300020496\|Ga0208230_1025266	Not Available	567	Open in IMG/M
3300020565\|Ga0208718_1062152	Not Available	694	Open in IMG/M
3300021325\|Ga0210301_1197122	Not Available	728	Open in IMG/M
3300021328\|Ga0210298_1023835	Not Available	724	Open in IMG/M
3300024346\|Ga0244775_10145110	All Organisms → cellular organisms → Eukaryota	2004	Open in IMG/M
3300024346\|Ga0244775_10291169	Not Available	1355	Open in IMG/M
3300026883\|Ga0209895_1021091	Not Available	515	Open in IMG/M
3300027193\|Ga0208800_1047300	Not Available	584	Open in IMG/M
3300027195\|Ga0208676_1028555	Not Available	516	Open in IMG/M
3300027203\|Ga0208925_109944	Not Available	689	Open in IMG/M
3300027230\|Ga0208171_1008218	Not Available	1081	Open in IMG/M
3300027236\|Ga0208026_1041412	Not Available	644	Open in IMG/M
3300027240\|Ga0208444_1021728	Not Available	902	Open in IMG/M
3300027254\|Ga0208177_1002456	Not Available	2744	Open in IMG/M
3300027259\|Ga0208178_1046964	Not Available	788	Open in IMG/M
3300027263\|Ga0208446_1040671	Not Available	848	Open in IMG/M
3300027757\|Ga0208671_10041235	Not Available	1724	Open in IMG/M
3300027836\|Ga0209230_10470474	Not Available	715	Open in IMG/M
3300027885\|Ga0209450_10336976	Not Available	1094	Open in IMG/M
3300031784\|Ga0315899_10608331	Not Available	1030	Open in IMG/M
3300032093\|Ga0315902_11130207	Not Available	571	Open in IMG/M
3300032275\|Ga0315270_10335682	All Organisms → cellular organisms → Eukaryota	954	Open in IMG/M
3300033984\|Ga0334989_0027411	Not Available	3050	Open in IMG/M
3300033984\|Ga0334989_0061245	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Fragilariophyceae → Fragilariophycidae → Rhabdonematales → Grammatophoraceae → Grammatophora → Grammatophora oceanica	2074	Open in IMG/M
3300033984\|Ga0334989_0174293	Not Available	1189	Open in IMG/M
3300033984\|Ga0334989_0297652	Not Available	859	Open in IMG/M
3300033984\|Ga0334989_0480114	Not Available	622	Open in IMG/M
3300033984\|Ga0334989_0567462	Not Available	550	Open in IMG/M
3300034018\|Ga0334985_0452668	Not Available	753	Open in IMG/M
3300034022\|Ga0335005_0456677	Not Available	720	Open in IMG/M
3300034050\|Ga0335023_0469460	Not Available	655	Open in IMG/M
3300034064\|Ga0335001_0149510	Not Available	1319	Open in IMG/M
3300034064\|Ga0335001_0740147	Not Available	511	Open in IMG/M
3300034066\|Ga0335019_0291763	All Organisms → cellular organisms → Eukaryota	1026	Open in IMG/M
3300034066\|Ga0335019_0309888	Not Available	988	Open in IMG/M
3300034068\|Ga0334990_0678530	Not Available	535	Open in IMG/M
3300034105\|Ga0335035_0441665	Not Available	727	Open in IMG/M
3300034107\|Ga0335037_0088638	Not Available	1677	Open in IMG/M
3300034116\|Ga0335068_0572402	Not Available	513	Open in IMG/M
3300034167\|Ga0335017_0268265	Not Available	960	Open in IMG/M
3300034167\|Ga0335017_0312036	Not Available	873	Open in IMG/M
3300034168\|Ga0335061_0500203	Not Available	619	Open in IMG/M
3300034355\|Ga0335039_0379116	Not Available	730	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.19%
Terrestrial	Environmental → Terrestrial	0.81%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	60.48%
Marine	Environmental → Aquatic → Marine	38.71%
Soil	Environmental → Terrestrial → Soil	0.81%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	50.81%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	29.03%
Lentic	Environmental → Aquatic → Freshwater → Lentic	7.26%
Coastal	Environmental → Aquatic → Marine → Coastal	7.26%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.61%
Ice	Environmental → Aquatic → Freshwater → Ice	0.81%
Sand	Environmental → Terrestrial → Soil → Sand	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	50.00%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	29.03%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.26%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	4.03%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.42%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.61%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.81%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	31.45%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	29.03%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	17.74%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	6.45%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.42%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.42%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.61%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.61%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.81%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.81%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.81%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.81%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.81%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.81%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.81%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.81%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	0.81%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352003	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300001275	Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion	Environmental	Open in IMG/M
3300002299	Freshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300005585	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF	Environmental	Open in IMG/M
3300005942	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757	Environmental	Open in IMG/M
3300007543	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3	Environmental	Open in IMG/M
3300007548	Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3	Environmental	Open in IMG/M
3300007550	Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3	Environmental	Open in IMG/M
3300007558	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733	Environmental	Open in IMG/M
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental	Open in IMG/M
3300007561	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3	Environmental	Open in IMG/M
3300007585	Estuarine microbial communities from the Columbia River estuary - metaG 1562A-3	Environmental	Open in IMG/M
3300007636	Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3	Environmental	Open in IMG/M
3300007649	Estuarine microbial communities from the Columbia River estuary - metaG 1560A-3	Environmental	Open in IMG/M
3300007670	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3	Environmental	Open in IMG/M
3300007706	Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3	Environmental	Open in IMG/M
3300007718	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-3	Environmental	Open in IMG/M
3300007860	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372A_3um	Environmental	Open in IMG/M
3300007861	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3um	Environmental	Open in IMG/M
3300007953	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_3um	Environmental	Open in IMG/M
3300007955	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_3.0um	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008115	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-100-LTR	Environmental	Open in IMG/M
3300008117	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA	Environmental	Open in IMG/M
3300008121	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-100-LTR	Environmental	Open in IMG/M
3300008122	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample HABS-E2014-0124-100-LTR	Environmental	Open in IMG/M
3300008258	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA	Environmental	Open in IMG/M
3300008263	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR	Environmental	Open in IMG/M
3300008265	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTR	Environmental	Open in IMG/M
3300008996	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747	Environmental	Open in IMG/M
3300009002	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573	Environmental	Open in IMG/M
3300009003	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725	Environmental	Open in IMG/M
3300009026	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575	Environmental	Open in IMG/M
3300009056	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3	Environmental	Open in IMG/M
3300009080	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759	Environmental	Open in IMG/M
3300011009	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_DNA	Environmental	Open in IMG/M
3300011010	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice	Environmental	Open in IMG/M
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental	Open in IMG/M
3300020496	Freshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020565	Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)	Environmental	Open in IMG/M
3300021325	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1033 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021328	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R877 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300026883	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_10-June-14 (SPAdes)	Environmental	Open in IMG/M
3300027193	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 (SPAdes)	Environmental	Open in IMG/M
3300027194	Estuarine microbial communities from the Columbia River estuary - metaG S.751 (SPAdes)	Environmental	Open in IMG/M
3300027195	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-3 (SPAdes)	Environmental	Open in IMG/M
3300027203	Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3 (SPAdes)	Environmental	Open in IMG/M
3300027230	Estuarine microbial communities from the Columbia River estuary - metaG 1551A-3 (SPAdes)	Environmental	Open in IMG/M
3300027236	Estuarine microbial communities from the Columbia River estuary - metaG 1554A-3 (SPAdes)	Environmental	Open in IMG/M
3300027240	Estuarine microbial communities from the Columbia River estuary - metaG 1555A-3 (SPAdes)	Environmental	Open in IMG/M
3300027254	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3 (SPAdes)	Environmental	Open in IMG/M
3300027259	Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3 (SPAdes)	Environmental	Open in IMG/M
3300027263	Estuarine microbial communities from the Columbia River estuary - metaG 1569A-3 (SPAdes)	Environmental	Open in IMG/M
3300027757	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)	Environmental	Open in IMG/M
3300027836	Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental	Open in IMG/M
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300033984	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030	Environmental	Open in IMG/M
3300034018	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021	Environmental	Open in IMG/M
3300034022	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058	Environmental	Open in IMG/M
3300034050	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095	Environmental	Open in IMG/M
3300034064	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054	Environmental	Open in IMG/M
3300034066	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087	Environmental	Open in IMG/M
3300034068	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031	Environmental	Open in IMG/M
3300034105	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127	Environmental	Open in IMG/M
3300034107	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133	Environmental	Open in IMG/M
3300034116	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR	Environmental	Open in IMG/M
3300034167	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082	Environmental	Open in IMG/M
3300034168	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183	Environmental	Open in IMG/M
3300034355	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2199900073	2199352003	Freshwater	LQILPIVKGNDKHAILDALISSNDKVWSKFKKHPLKTNMRLATAAAARARGGILSQDEEEQLQYADMLIDVSKNLNSTHCQVIEVEE
B570J13894_10107672	3300001275	Freshwater	VKGNDKPAILEALISSNNKVWGEFIMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYAEMLIDVSRN
B570J29632_1018592	3300002299	Freshwater	VKGNDKPAILAALISSNNKVWGDFNMHPLKTNMRLATAAAAQARGGLLSQEEKEQLQYAEMLI
Ga0068877_107421412	3300005525	Freshwater Lake	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQACGGILSQEEEAQLQYAAMLIDVSKNCNSPWCQVIEEED
Ga0049084_103002082	3300005585	Freshwater Lentic	LQILPIVKGNDKHAILDALISSNDKVWSRFKKHPLKTNMRLATAAAARARGGILSQDEEEQLQYADM
Ga0070742_100285701	3300005942	Estuarine	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQAHGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIE
Ga0102853_10083332	3300007543	Estuarine	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQARGGILSQEEEAQLRYAAC*
Ga0102853_10193932	3300007543	Estuarine	LQILPIVKGNDKHAILDALISSNDKVWSRFKKHPLKTNMRLATAAAARARGGILSQDEVEQLQYADMLIDVSKNLNSSYCQ
Ga0102877_11260471	3300007548	Estuarine	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMRLATAAAAQAHGGLLSQEEEDQLRYADMLLDVSNNRNSPWCQVIQQVDEDISKLGFPFMQYYT
Ga0102880_11649711	3300007550	Estuarine	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQARGGILSQEEEAQLQYAAMLIDVSKNRNSLWCQVI
Ga0102822_10458073	3300007558	Estuarine	LQILPIVKGNDKHAILEALISSNNNVWSRLKKHPLKTNMCLATAAAARACGGILSQDEEQWLQYADRLIDVSKNLNSIHCQVIEV
Ga0102822_10977653	3300007558	Estuarine	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMRLATAAAAQAHGGLLSQEEEDQLRYADMLLDVSNNRNSPWCRVIQQVD
Ga0102828_11848902	3300007559	Estuarine	VKGNDKPAILAALISSNNKVWGEFYMHPLKTNMRLARAAAAQARGGILSQEEQAQLQYADMLIDVSKNRNSPWCQV
Ga0102914_12590502	3300007561	Estuarine	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQAHGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIEEEDENTSKL
Ga0102916_11838841	3300007585	Estuarine	LSCVIRKDAAHCYLQILPIVKGNDKHAILDALISSNDKVWSKFKKHPLKTNMRLATAAAARARGGILSQDEEEQLQYADMLIDVSKNLNSTHCQVIEV
Ga0102856_10480102	3300007636	Estuarine	VKGNDKPAILAALISSNTKVWSEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYAEMLIDVS
Ga0102912_10358271	3300007649	Estuarine	LQILPIVKGNDKHAILDALISSNDKVWSKFKKHPLKTNMRLATAAAARARGGILSQDEEEQLQYADMLIDVSKNLNSTHCQVIEVESENVSKLGLPILQYFTEAE*
Ga0102912_10412242	3300007649	Estuarine	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQARGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIEEEDEN
Ga0102912_10454472	3300007649	Estuarine	VKGNDKPAILAALISSNNKVWGDFNMHPLKTNMRLATAAAAQARGGLLSQEEKE
Ga0102862_11603621	3300007670	Estuarine	VKGNDKPAILAALISSNNKVWGEFNMHPLKTNMRLARAAAAQARGGILSQEEQAQLQYADMLIDVSKNRNSPWCQVVEEEDENTSKL
Ga0102899_10892772	3300007706	Estuarine	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQAHGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIE*
Ga0102852_10123142	3300007718	Estuarine	LQILPIVKGNDKHAILDALISSNDKVWSRFKKHPLITNMRLATAAAARAHGGILSQDEEEQLQYADMLIDVSKNLNSSYCQVIE
Ga0105735_10655832	3300007860	Estuary Water	VKGNDKPAILAALISSNTKVWSEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYA
Ga0105735_11155052	3300007860	Estuary Water	VKGNDKPAILAALISSNNKVWGDFNMHPLKTNMRLATAAAAQARGGLLSQEEKEQLQYAEMLIDVSRNRSSP*
Ga0105736_10606662	3300007861	Estuary Water	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQARGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIEEEDENTSKL
Ga0105736_11482811	3300007861	Estuary Water	VKGNDKPAILAALISSNNKIWGEFYMHPLKTNMRLATAAAAQAHGGILSQEEEEQLRYAEMLIDVSKNRNSPWCQVIEEEDENISKLGLPFMNYYTEADHKHA
Ga0105736_11497951	3300007861	Estuary Water	VKGNDKPAILAALISSNNKVWGEFNMHPLKTNMRLARAAAAQARGGILSQEEQAQLQYADMLIDVSKNRN
Ga0105736_11498791	3300007861	Estuary Water	VKGNDKPAILAALISSNNKVWGEFYMHPLKTNMRLATAAAAQARGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIE
Ga0105738_10581771	3300007953	Estuary Water	LQILPIVKGNDKHAILDALISSNDKVWSRFKKHPLKTNMRLATAAAARARGGILSQDEEEQLQYADMLIDVSKNLNSS
Ga0105740_10770392	3300007955	Estuary Water	VKGNDKPAILAALISSNNKVWGEFNMHPLKTNMRLARAAAAQARGGILSQEEQAQLQYMQIC*
Ga0114340_10135771	3300008107	Freshwater, Plankton	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMRLATAAAAQAHGGLLSQEEEDQLRYADML
Ga0114348_11130402	3300008115	Freshwater, Plankton	VKGNDKPAILAALISSNNKIWGEFYMHPLKTNMRLATAAAAQAHGGILSQEEEEQLRYAEMLIDVSKN
Ga0114351_10236684	3300008117	Freshwater, Plankton	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMRLATAAAAQAHGGLLSQEEEDQLRYADMLLDVSNNRNSPWCRVIQQVD*
Ga0114356_15243221	3300008121	Freshwater, Plankton	VKGNDKPAILAALISSNNKVWGEFYMHPLKTNMRLATAAAAQACGGLLSQEEEEQLRYAEMLIDVSKNRNS
Ga0114359_12113502	3300008122	Freshwater, Plankton	VKGNDKPAILAALISSNNKVWGEFYMHPLKTNMRLATAAAAQARGGILSQEEEAQLQ
Ga0114840_10401251	3300008258	Freshwater, Plankton	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMRLATAAAAQAHGGLLSQEEEDQLRYADMLLDVSNNRNSPWCQVIQQVDKDISKLGFPFM
Ga0114349_10049073	3300008263	Freshwater, Plankton	LDALISSNNKVWGEFIMHPLKTNMRLATAAAAQARGGLLSQEEEEQLWYAAAPAACCQYFV*
Ga0114349_10126916	3300008263	Freshwater, Plankton	VKGNDKPAILEALISSNNKVWGEFNMHPLKTNMHLATAAAAQARGGILSQEEEEQLRYADMLIEGR*
Ga0114349_10799131	3300008263	Freshwater, Plankton	VKGNDKPAILAALISSNNKIWGEFYMHPLKTNMRLATAAAAQAHGVILSQEEEAQLQYAAMLIHFSKNHNSP*
Ga0114349_11212123	3300008263	Freshwater, Plankton	MLIRKDAAHCYLQILPIVKGNDKHTILDALISSNNKVWSRFKKHPLKIDMHLATAAAARAHGGILSQDEEEQLQYADMLIDVSKNLNSTHCQVIEVEDENISE*
Ga0114349_11371501	3300008263	Freshwater, Plankton	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMHLATAAAAQAHGGILSQEEEAQLRYVAMLIDVSKNRNSPWCQVIEEEDENISKLGLPFMNYYTQA
Ga0114349_11851112	3300008263	Freshwater, Plankton	VKGNDKPAILAALISSNNKVWGEFNMHPLKTNMRLATAAAAQVRGGLLSHEEEEQLRYAEMLIDVSNNRNSPWCNVIEQEDENVSKLGLPFMQYYTQA
Ga0114349_12004412	3300008263	Freshwater, Plankton	VKGNDKPAILEAHISSNNKVWGDFHMHPLKTNMCLATAAAAQARGGILSQEEEAQLRYAAC*
Ga0114349_12219392	3300008263	Freshwater, Plankton	LQILPIVKGNDKHAIPNALISSNKRVWSRFKKHPLKTNMHLATAATARARGGILSQDEEEQLQYADMLIDVSKNLNSTHCQVI
Ga0114349_12368302	3300008263	Freshwater, Plankton	VKGNDKPAILAALISSNNKIWGEFYMHPLKTNMRLATAAAAQAHGGILSQEEEEQLRYAEMLIDVSKNRNS
Ga0114349_12401602	3300008263	Freshwater, Plankton	VKGNDKRAILEALISSNNKVWGDFHMHPLKTNTCLATAAAAQARGGILSQEEQAQLRYADMLIDVSKNRNSPWCQVIEEEDENISKLGLPFMNYYTQA
Ga0114349_12494891	3300008263	Freshwater, Plankton	MLIRKDAAHCYLQILPIVKGNDKHAILDALISSNDKVWSRFKKHPLKTNMRLATAAAARARRGILSQDEEEKLQYADMLIDVSKNLNSNHCQVIEVEDENVSKLGLPIM
Ga0114349_12534732	3300008263	Freshwater, Plankton	VKGNDKPAILAALISSNNKVWGEFCMHPLKTNMRLATAAAAQARGGILSQEEEAQLQYAAMLID
Ga0114349_12549692	3300008263	Freshwater, Plankton	LQILPILKGNDKHAILDALISSNDKAWSRFKKHPLKTNMRLATAATARARGGILSQDEEEQLQYADMLIDVSKNLNS
Ga0114349_12677092	3300008263	Freshwater, Plankton	LSCVIQKNAAHCNLQILPIVKGNDKHAILDALISSNNKVWSRFKKHPLKTNMHLATAAAARARGGILSQDEEEQLQYTDMLIDVSKNLNSNHCQVIEVEDENISKLGLPIMQYF
Ga0114349_12784731	3300008263	Freshwater, Plankton	VKRNDKPAILAALISSNNKVWGEFCMHPLKTNMRLATAAAAQARGGILSQEEEAQLQYAAMLIDVSKNR
Ga0114361_10186853	3300008265	Freshwater, Plankton	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMLLATAAAAQAHGGILSQEEEAQLRYAAMLIDVSKNRKLILVPSHRRGG*
Ga0114361_10252251	3300008265	Freshwater, Plankton	EALISSNNKVWGDFHMHPLKTNMRLATAAAAQAHGGILSQEKEAQFQYAAMLIDVSKNRN
Ga0114361_10330592	3300008265	Freshwater, Plankton	VKGNDKPAILEALISSNNKVWGDFHMHTLMTNMRLATAAAAQARGGILSQEEEAQLWYAAMLIDVSKNRNSPWCQVIEEEDEHISKLGLPFVNYYT*
Ga0114361_10440682	3300008265	Freshwater, Plankton	VKGNDKPAILAALISSNNKVWGEFYMHPLNTNMRLATAAAAQARDGILSKEEEAKLQYAAMLIDVSKNRNSPWCQVIEEEDENIPKLGILS*
Ga0114361_10746042	3300008265	Freshwater, Plankton	VKRNEKPAILAALISSNNKVWGEFYMHPLKTNMCLATAAAAQARGGILSQEEEA*
Ga0114361_10949631	3300008265	Freshwater, Plankton	VKGNDKQAILAALISSNNKVWGEFYMHPLKTNMHLATAVAAQARGGILSQEEEAQLQYAAMSIDVSKNRNSPWCQVIEEEDENISKLGLPFMNYYTEAD
Ga0114361_10970503	3300008265	Freshwater, Plankton	PAILAALISSNNKVWGEFYMHPLKTNMRLATAAAAQAHGGILSQEEEVQLQYAAMLIDVSKN*
Ga0114361_11037231	3300008265	Freshwater, Plankton	VKGNDKPAILAALISSNNQIWGEFYMHPLKTNMRLATAAAAQARGGILSQEEEAQLQYAAMLIDVSKNRNSPWCKVIEEEDENISKLGLPFMN
Ga0114361_11144811	3300008265	Freshwater, Plankton	VEGNDKPAILAALISSNNKVWGEFYMHPFKTNMRLATAAAAQARGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIEEEDENISKLGLPFMNYYTEADHK
Ga0114361_11447501	3300008265	Freshwater, Plankton	VKGNDKPAILAALISSNNKIWGKFYMHPLKTNMRLAKAATAQARGGILSQEEEAQLQYAAMLIDVSKNHNSPWCQVIEEEDENISKLGLPFMN
Ga0114361_11491572	3300008265	Freshwater, Plankton	VKGNDKPAILAALISSNNEVWGEFYMHPLKTNMRLATAAAAQARGGILSQEEEAQFA
Ga0114361_11578182	3300008265	Freshwater, Plankton	VKGNDKPAILVALISSNNKIWGEFNMHPLKTNMRLATAAAAQAHGGLLSQEEEEQLRYAEMLIDVSKNCNSPWCNVIEQEDENVSKLGLPFMQYYTQADHMSA
Ga0114361_11656721	3300008265	Freshwater, Plankton	VKGNDKPAILAALISLNNKVWGEFNMHPLKTNMRLATAAAAQARGGLLSQEEEGQLRYAEMLIQKSQLTLVPCNRTGR*
Ga0114361_11849852	3300008265	Freshwater, Plankton	LQLLPIVKGNDKHAILDALISSNERVWSRFKKHPLKTNMRLATAATARSRGGILSQDEEEQLQYADMLIDVSKNLNSTHCQVIEVE
Ga0114361_11888742	3300008265	Freshwater, Plankton	VKGNDKLAILAALISSNSKVWGEFYMHPLKTNMRLATAAAAHARGGILSQEEEVQLQYAAMLIDVSKNRNSPWCQVIEEEEGLVWYSWLEDLS*
Ga0114361_12139051	3300008265	Freshwater, Plankton	NDKPAILAALISSNNKVWGEFYMHPLKTNMRLATATAAQARGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIEEEDENISKLGLPFMN*
Ga0114361_12456152	3300008265	Freshwater, Plankton	VKGKDKPAILETLISSNNKVWGDFHMHPLKTNMRLATAAAAQARGGILSQEEQAQLRYADMLIDVSKNRNSPWCQVIEEEDENISKLGLPFMNYYTQAD
Ga0114361_12623662	3300008265	Freshwater, Plankton	VKGNDKPAILAALIFSNNKVWGEFYMHPLKTNMRLATAAAAQVRGGILSQEEEAQLQYAAMLIDVSKNCNSPWKIYPNLDFLL*
Ga0102831_10271162	3300008996	Estuarine	VKGNDKHAILEALISSNDKGWGEFKMHPLKINMRLATAAAAQAHGGLLSQEEEDQLRYADMLLDVSNNRNSSWCQAIQQVD
Ga0102810_10967783	3300009002	Estuarine	VKGNDKPAILEALISSNNKVWGEFNMHLLKTNMRLATAAAAQARGGLLSQEEEEQL*
Ga0102813_11439841	3300009003	Estuarine	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMRLATAAAAQARGGLLSQEEEDQLGYAD
Ga0102829_11429381	3300009026	Estuarine	VKGNDKPAILAALISSNNKVWGEFYMHPLKTNMRLATAAAAQARGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIEDEDENTSKLGFPFMNYYT
Ga0102860_10573081	3300009056	Estuarine	VKGNDKPAILEALISSNNKVWGEFIMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYAEMLLDVSKNRNSPWCQIIDDEDENISKLGLPFMNYYTMAD
Ga0102860_12209851	3300009056	Estuarine	LSCVIRKDAAHCYLQILPIVKGNDKHAILDALISSNDKIWSRFKKHPLKTNMHLATAAAARARGGILSQDEEEQLQYADMLIDVSNNMNSTHCQVIEVK
Ga0102815_108185861	3300009080	Estuarine	VKGNDKPAILAALISSNNKVWGEFYMHPLKTNMRLATAAAAQARGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIEEEDENT
Ga0129318_101637791	3300011009	Freshwater To Marine Saline Gradient	VKGNDKPAILAALISSNNKVWGEFYMHPLKTNMRLATAAAAQARGGLLSQEEKEQLQYAEMLIDVSRNRNSPWCQVIEEEDENISKLGLPFMNYYTEADHKH
Ga0139557_10186101	3300011010	Freshwater	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMRLATAAAAQAHGGLLSQKKEDQLQYADMLLD
Ga0211733_108676112	3300020160	Freshwater	VKGNDKPAILAALISSNNKVWGEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYAEMLIDVSKNRNSPWCQVIEEEDEN
Ga0208230_10252662	3300020496	Freshwater	MGNDKHSILEALISSNNDVWGKFHIHPLKTNMRLATAAAARARGGLILQDEEEQLQYADMLIDVSMNRNSAQ
Ga0208718_10621521	3300020565	Freshwater	LQILPIVKGNDKHAILDALISSNDKVWSKFKKHPLKTNMRLATAAAARAHGGILSQDEEEQLQYADMLIDVSKNLNSTHCQVIEVESENVS
Ga0210301_11971222	3300021325	Estuarine	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAPAHGGILSQEEEAQLQYAAMLIDVS
Ga0210298_10238352	3300021328	Estuarine	LQILPIVKGNDKHAILDALISSNDKVWSRFKKHPLKTNMRLATAAAGRARGGILSQDEEEQLQYADMLI
Ga0244775_101451102	3300024346	Estuarine	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQAHGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIERRMKIHPNLVFLS
Ga0244775_102911692	3300024346	Estuarine	VKENDKPAILAALISSNDKVWGEFYMHPLKTNMRLATAAAAQARGGILSQEEEAQLKYAAMLIDVSKNRNSLWCQV
Ga0209895_10210911	3300026883	Sand	VKGNDKPAILAALISSNDKVWGEFYMHPLKTNMRLATAAAAQARGGILSQEEQAQLQYADMLIDVSK
Ga0208800_10473002	3300027193	Estuarine	LQILPIVKGNDKHAILDALISSNDKVWSKFKKHPLKTNMRLATAAEARARGGILSQDEEEQLQYADMLIDV
Ga0208799_10522701	3300027194	Estuarine	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMRLATAAAAQAHGGLLSQEEED
Ga0208676_10285552	3300027195	Estuarine	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQAHGGILSQEEEAQLQYAAMLIDVSKNCNSPWCQVIEEEDENTS
Ga0208925_1099442	3300027203	Estuarine	VKGNDKPAILAALISSNNKVWGEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQLR
Ga0208171_10082182	3300027230	Estuarine	MVSTKTLPIVKCNDKRSILEALISSNIDIWSKFNIHPLTTNMRLATAAAARARGGYITPEEEDQLNYAEMLIDVSMNRNSPWCRVIEAVDENISRLA
Ga0208026_10414121	3300027236	Estuarine	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMRLATAAAAQAHGGLLSQEEEDQLRYADMLLDVSNNRNSPWCRVIQ
Ga0208444_10217282	3300027240	Estuarine	MDYSIQQTLPIVKGNDKQSILEALISSNENVWCKFNMHPLKMNMRLATAAAARARGGLLSQDEEDQLKYADMLIDVSMNRNSAHCLVINQLDDNTSTLGLP
Ga0208177_10024561	3300027254	Estuarine	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMHLATAAAAQAHGGLLSQEEEDQLRYADMLLDVSNNRNSPWCQVIQQ
Ga0208178_10469642	3300027259	Estuarine	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMRLATAAAAQAHGGLLSQEEEDQLRYADMLLDVSNNRNSPWCRVI
Ga0208446_10406712	3300027263	Estuarine	VKENDKPAILAALISSNDKVWGEFYMHPLKTNMRLATAAAAQARGGILSQEEEAQLKYAAMLIDVSKNRNSLWCQVIQHVYENIS
Ga0208671_100412352	3300027757	Estuarine	VKGNDKHAILEALISSNDKVWGEFKMHPLKINMRLATAAAAQAHGGLLSQEEEDQLRYADMLLDVSNNRNSPWCRVIQQVDE
Ga0209230_104704742	3300027836	Freshwater And Sediment	LQILPIVKGNDKHAILDALISSNDKVWSKFKKHPLKTNMRLATAAAARARGGILSQDEEEQLQYADMLIDVSKNLNSTHCQVI
Ga0209450_103369762	3300027885	Freshwater Lake Sediment	MGNDKHSILEALVSSNNNVWGKFHMHPLKTNMHLATAAAARARGGLILQDEEEQLQYADMLIDVSMNRNSAQCHVIQDVDEN
Ga0315899_106083311	3300031784	Freshwater	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQAHGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIEEEDENTS
Ga0315902_111302072	3300032093	Freshwater	VKGNDKPAILEALISSNNKVWGDFHMHPLKTNMRLATAAAAQAHGGILSQEEEAQLQYAAMLIDVSKNRNSPWCQVIEEEDDNTSKLGFPFMNYYTQADHK
Ga0315270_103356821	3300032275	Sediment	LQILPIVKGNDKHAILDALISSNDKVWSRFKKHPLITNMRLATAAAARARGGILSQDEEEQLQYADMLIDVSKNLNSSYCQVI
Ga0334989_0027411_2889_3050	3300033984	Freshwater	VKGNDKPAILEALISSNNKVWGEFNMHPLKTNMRLATAAAAQARGGILSQEEEE
Ga0334989_0061245_3_203	3300033984	Freshwater	VKGNDKPAILAALISSNNKVWGEFYMHLLKTNMRLATAAAAQARGGLLSQEEEEQLRYAEMLIDVSK
Ga0334989_0174293_2_241	3300033984	Freshwater	VKGNDKPAILAALISSNNKVWGEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYAEMLIDVSKNRNSPLCHVIEQE
Ga0334989_0297652_616_858	3300033984	Freshwater	VKGNDKPAILAALISSNNKVWGEFNMHPLKTNMRLATAAAAQARGGLLTQEEEEQLRYAEMLIDVSKNRNSPLCHVIDQED
Ga0334989_0480114_376_621	3300033984	Freshwater	LQILPIVKRNDKHAILDALISSNDKVWSRFKKHPLKTNMRLATAAAARAHGGILSQDEKEQLQYADMLIDVSKNLNSIYCQV
Ga0334989_0567462_287_550	3300033984	Freshwater	VKGNDKPAILAALISSNNKVWGEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYAEMLIDVSKNRNSPLCHVIEQEDENVSKLG
Ga0334985_0452668_576_752	3300034018	Freshwater	VKGNDKPAILEALISSNNKVWGEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYA
Ga0335005_0456677_3_188	3300034022	Freshwater	VKGNDKPAILEALISSNNKVWGEFNMHPLKTNMRLATAAAAQARGGILSQEEEEQLRYADML
Ga0335023_0469460_380_655	3300034050	Freshwater	LQILPIVKGNDKHAILDALISSNDKVWSRFKKHPLITNMRLATAAAARARGGILSQDEEEQLQYADMLIDVSKNLNSSYCQVIEVEDENVSK
Ga0335001_0149510_3_269	3300034064	Freshwater	VKGNDKPAILEALISSNNKVWGEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYADMLIDVSNNRNSPWCQVIEQEDENVSKLGL
Ga0335001_0740147_1_168	3300034064	Freshwater	VKGNDKPAILEALISSNSKVWGEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQL
Ga0335019_0291763_2_265	3300034066	Freshwater	VKGNDKPAILAALISSNNKVWGDFNMHPLKTNMRLATAAAAQARGGLLSQEEKEQLQYAEMLIDVSRNRNSPWCQVIEQEDENVSKLG
Ga0335019_0309888_3_257	3300034066	Freshwater	VKGNDKPAILEALISSNNKVWGEFNMHPLTTNMRLATAAAAQACGGLLSQEEEEQLQYADMLIDVSNNCNSPWCQVIEHEDENIS
Ga0334990_0678530_323_535	3300034068	Freshwater	VKGNDKPAILEALISSNNKVWGEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYAEMLIDVSKNRNS
Ga0335035_0441665_1_162	3300034105	Freshwater	VKGNDKPAILEALISSNNKVWGEFNMHPLTTNMRLATAAAAQACGGLLSQEEEE
Ga0335037_0088638_1433_1675	3300034107	Freshwater	VKGNDKPAILAALISSNNKVWGEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYAEMLIDVSKNCNSPLCHVIEQED
Ga0335068_0572402_2_310	3300034116	Freshwater	VKGNDKPAILEALISCNNKVWGEFIMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYADMLIDVSNSCNSPWCQVIEHKDENISKLGLPFMQYYTQADHKSA
Ga0335017_0015995_3_164	3300034167	Freshwater	VKGNDKPAILAALISSNNKVWGEFYMHPLKTNMRLATAAAAQARGGLLSQEEEE
Ga0335017_0268265_2_214	3300034167	Freshwater	LQILPIVKGNDKHAILDALISSNDKVWSRIKKHPLKTNMRLATAAAARARGGILSQDEEEQLQYADMLIDV
Ga0335017_0312036_152_328	3300034167	Freshwater	VKGNDKPAILAALISSNNKVWDEFNMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRP
Ga0335061_0500203_429_617	3300034168	Freshwater	VKGNDKPAILAALISSNNKVWGEFYMHPLKTNMRLATAAAAQARGGLLSQEEEEQLRYAEMLI
Ga0335039_0379116_2_187	3300034355	Freshwater	VKGNDKPAILAALISSNNKVWGEFCMHPLKTNMRLATAAAAQARGGILSQEEEAQLQYAAML

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068469

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign