Metagenome / Metatranscriptome Family F067972

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067972
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	81 residues
Representative Sequence	MKAILIALAALSLVSVATPASAQDGWRDRDHRRHDNDWRRHHRSGITVDVGRSYARSNCAVKVTKIHRSNGTTVTRRVRSCD
Number of Associated Samples	78
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.40 %
% of genes near scaffold ends (potentially truncated)	31.20 %
% of genes from short scaffolds (< 2000 bps)	88.00 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.800 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.800 % of family members)
Environment Ontology (ENVO)	Unclassified (36.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 18.18% β-sheet: 24.55% Coil/Unstructured: 57.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF13343	SBP_bac_6	3.20
PF12840	HTH_20	2.40
PF03401	TctC	0.80
PF00664	ABC_membrane	0.80
PF07995	GSDH	0.80
PF05532	CsbD	0.80
PF09538	FYDLN_acid	0.80
PF03449	GreA_GreB_N	0.80
PF03749	SfsA	0.80
PF10722	YbjN	0.80
PF03466	LysR_substrate	0.80
PF00589	Phage_integrase	0.80
PF00155	Aminotran_1_2	0.80
PF00834	Ribul_P_3_epim	0.80
PF08282	Hydrolase_3	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG0036	Pentose-5-phosphate-3-epimerase	Carbohydrate transport and metabolism [G]	0.80
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	0.80
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.80
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.80
COG1489	DNA-binding protein, stimulates sugar fermentation	Signal transduction mechanisms [T]	0.80
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.80
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.80
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.80
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.80
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.80
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.80 %
All Organisms	root	All Organisms	35.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.80 %
cellular organisms	root	All Organisms → cellular organisms	35.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.80 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.60 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.20 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.80 %
Methylobacterium oryzae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oryzae	0.80 %
Bradyrhizobium arachidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	0.80 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10534760	Not Available	559	Open in IMG/M
3300001686\|C688J18823_10244267	Not Available	1196	Open in IMG/M
3300003162\|Ga0006778J45830_1063667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300003308\|Ga0006777J48905_1029726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	643	Open in IMG/M
3300004281\|Ga0066397_10130252	Not Available	557	Open in IMG/M
3300004633\|Ga0066395_10255145	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300005332\|Ga0066388_100035367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4809	Open in IMG/M
3300005332\|Ga0066388_100319653	All Organisms → cellular organisms → Bacteria → Proteobacteria	2198	Open in IMG/M
3300005332\|Ga0066388_101450720	All Organisms → cellular organisms → Bacteria → Proteobacteria	1196	Open in IMG/M
3300005332\|Ga0066388_101695453	All Organisms → cellular organisms → Bacteria → Proteobacteria	1118	Open in IMG/M
3300005332\|Ga0066388_103767691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	774	Open in IMG/M
3300005332\|Ga0066388_104228727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	732	Open in IMG/M
3300005552\|Ga0066701_10568532	Not Available	694	Open in IMG/M
3300005555\|Ga0066692_10332993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	963	Open in IMG/M
3300005713\|Ga0066905_100073204	Not Available	2216	Open in IMG/M
3300005713\|Ga0066905_100768568	Not Available	833	Open in IMG/M
3300005713\|Ga0066905_100769694	Not Available	832	Open in IMG/M
3300005713\|Ga0066905_101739818	Not Available	574	Open in IMG/M
3300005764\|Ga0066903_103280963	Not Available	874	Open in IMG/M
3300005764\|Ga0066903_104817840	Not Available	717	Open in IMG/M
3300005937\|Ga0081455_10729065	Not Available	629	Open in IMG/M
3300005937\|Ga0081455_10927213	Not Available	541	Open in IMG/M
3300005983\|Ga0081540_1234439	Not Available	646	Open in IMG/M
3300006034\|Ga0066656_11086048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oryzae	514	Open in IMG/M
3300006046\|Ga0066652_101277611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300006175\|Ga0070712_101152515	Not Available	674	Open in IMG/M
3300006755\|Ga0079222_10044566	Not Available	2015	Open in IMG/M
3300006755\|Ga0079222_12178545	Not Available	550	Open in IMG/M
3300006806\|Ga0079220_11102099	Not Available	643	Open in IMG/M
3300006806\|Ga0079220_11586738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	566	Open in IMG/M
3300006854\|Ga0075425_100367394	Not Available	1657	Open in IMG/M
3300006854\|Ga0075425_100685550	All Organisms → cellular organisms → Bacteria → Proteobacteria	1177	Open in IMG/M
3300006871\|Ga0075434_100741690	Not Available	999	Open in IMG/M
3300006871\|Ga0075434_102152478	Not Available	562	Open in IMG/M
3300006904\|Ga0075424_101688882	Not Available	671	Open in IMG/M
3300006914\|Ga0075436_100520980	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300006914\|Ga0075436_100670269	Not Available	767	Open in IMG/M
3300007788\|Ga0099795_10491707	Not Available	571	Open in IMG/M
3300009094\|Ga0111539_12399275	Not Available	612	Open in IMG/M
3300009100\|Ga0075418_11537726	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300009143\|Ga0099792_10011830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3693	Open in IMG/M
3300009143\|Ga0099792_10057876	All Organisms → cellular organisms → Bacteria → Proteobacteria	1913	Open in IMG/M
3300009162\|Ga0075423_13029344	Not Available	515	Open in IMG/M
3300010046\|Ga0126384_10086126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2279	Open in IMG/M
3300010047\|Ga0126382_10060644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2268	Open in IMG/M
3300010047\|Ga0126382_10161718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1547	Open in IMG/M
3300010047\|Ga0126382_10401974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1069	Open in IMG/M
3300010159\|Ga0099796_10068214	Not Available	1277	Open in IMG/M
3300010358\|Ga0126370_10012638	All Organisms → cellular organisms → Bacteria	4589	Open in IMG/M
3300010358\|Ga0126370_11632734	Not Available	618	Open in IMG/M
3300010360\|Ga0126372_10227477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1579	Open in IMG/M
3300010360\|Ga0126372_10729210	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300010360\|Ga0126372_11489239	Not Available	712	Open in IMG/M
3300010362\|Ga0126377_10015433	Not Available	6128	Open in IMG/M
3300010362\|Ga0126377_10150582	All Organisms → cellular organisms → Bacteria	2185	Open in IMG/M
3300010362\|Ga0126377_10680606	Not Available	1080	Open in IMG/M
3300010362\|Ga0126377_11709401	Not Available	704	Open in IMG/M
3300010362\|Ga0126377_11721405	Not Available	702	Open in IMG/M
3300010362\|Ga0126377_12007357	Not Available	654	Open in IMG/M
3300010366\|Ga0126379_10486959	Not Available	1302	Open in IMG/M
3300010366\|Ga0126379_11668412	Not Available	742	Open in IMG/M
3300010398\|Ga0126383_11730605	Not Available	714	Open in IMG/M
3300012200\|Ga0137382_10433737	Not Available	929	Open in IMG/M
3300012202\|Ga0137363_10350586	Not Available	1222	Open in IMG/M
3300012203\|Ga0137399_11570403	Not Available	546	Open in IMG/M
3300012209\|Ga0137379_10033302	All Organisms → cellular organisms → Bacteria	4965	Open in IMG/M
3300012211\|Ga0137377_10805098	Not Available	872	Open in IMG/M
3300012212\|Ga0150985_100508873	Not Available	847	Open in IMG/M
3300012212\|Ga0150985_101443990	Not Available	785	Open in IMG/M
3300012212\|Ga0150985_107811807	Not Available	729	Open in IMG/M
3300012212\|Ga0150985_108551363	Not Available	699	Open in IMG/M
3300012212\|Ga0150985_116746919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1651	Open in IMG/M
3300012212\|Ga0150985_119176127	Not Available	713	Open in IMG/M
3300012469\|Ga0150984_109839051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1084	Open in IMG/M
3300012469\|Ga0150984_113944961	Not Available	1255	Open in IMG/M
3300012469\|Ga0150984_119943105	Not Available	594	Open in IMG/M
3300012469\|Ga0150984_122336947	Not Available	549	Open in IMG/M
3300012469\|Ga0150984_123508586	Not Available	681	Open in IMG/M
3300012683\|Ga0137398_10648612	Not Available	732	Open in IMG/M
3300012685\|Ga0137397_10054337	Not Available	2879	Open in IMG/M
3300012685\|Ga0137397_10670255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	771	Open in IMG/M
3300012922\|Ga0137394_11398165	Not Available	561	Open in IMG/M
3300012927\|Ga0137416_10892301	Not Available	790	Open in IMG/M
3300012929\|Ga0137404_10299524	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300012929\|Ga0137404_10604149	Not Available	986	Open in IMG/M
3300012930\|Ga0137407_10531238	Not Available	1100	Open in IMG/M
3300012930\|Ga0137407_10694059	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300012930\|Ga0137407_11061202	Not Available	768	Open in IMG/M
3300012948\|Ga0126375_10173420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1386	Open in IMG/M
3300012948\|Ga0126375_10912121	Not Available	707	Open in IMG/M
3300012948\|Ga0126375_11572709	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300012948\|Ga0126375_11616199	Not Available	559	Open in IMG/M
3300012948\|Ga0126375_12113575	Not Available	501	Open in IMG/M
3300012971\|Ga0126369_11334586	Not Available	807	Open in IMG/M
3300014969\|Ga0157376_12673209	Not Available	539	Open in IMG/M
3300015245\|Ga0137409_10236659	Not Available	1627	Open in IMG/M
3300018000\|Ga0184604_10079084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	978	Open in IMG/M
3300018027\|Ga0184605_10220247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	862	Open in IMG/M
3300018028\|Ga0184608_10131923	Not Available	1067	Open in IMG/M
3300018060\|Ga0187765_11283773	Not Available	517	Open in IMG/M
3300018061\|Ga0184619_10207198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	901	Open in IMG/M
3300019789\|Ga0137408_1186997	Not Available	969	Open in IMG/M
3300020170\|Ga0179594_10062563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1281	Open in IMG/M
3300021560\|Ga0126371_11544878	Not Available	791	Open in IMG/M
3300022756\|Ga0222622_10568413	Not Available	816	Open in IMG/M
3300026557\|Ga0179587_10997197	Not Available	552	Open in IMG/M
3300027669\|Ga0208981_1181302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	531	Open in IMG/M
3300027765\|Ga0209073_10221809	Not Available	725	Open in IMG/M
3300027775\|Ga0209177_10259706	Not Available	645	Open in IMG/M
3300027903\|Ga0209488_10014394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	5768	Open in IMG/M
3300027907\|Ga0207428_10445360	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300028536\|Ga0137415_10054350	All Organisms → cellular organisms → Bacteria → Proteobacteria	3873	Open in IMG/M
3300028536\|Ga0137415_10485172	Not Available	1043	Open in IMG/M
3300030829\|Ga0308203_1074415	Not Available	550	Open in IMG/M
3300030905\|Ga0308200_1083006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	657	Open in IMG/M
3300031082\|Ga0308192_1090496	Not Available	510	Open in IMG/M
3300031152\|Ga0307501_10001843	Not Available	2474	Open in IMG/M
3300031152\|Ga0307501_10238891	Not Available	536	Open in IMG/M
3300031184\|Ga0307499_10026132	All Organisms → cellular organisms → Bacteria → Proteobacteria	1295	Open in IMG/M
3300031198\|Ga0307500_10064326	Not Available	917	Open in IMG/M
3300031720\|Ga0307469_11487022	Not Available	648	Open in IMG/M
3300032174\|Ga0307470_10217864	Not Available	1235	Open in IMG/M
3300032174\|Ga0307470_11063509	Not Available	648	Open in IMG/M
3300032180\|Ga0307471_102832195	Not Available	616	Open in IMG/M
3300032205\|Ga0307472_101276159	Not Available	706	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.60%
Host-Associated	Host-Associated	22.40%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.60%
Plants	Host-Associated → Plants	22.40%
Aquatic	Environmental → Aquatic	4.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.20%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.20%
Sediment	Environmental → Aquatic → Sediment	4.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.40%
Loam	Environmental → Terrestrial → Soil → Loam	14.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.40%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	46.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.40%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.80%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.20%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.60%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	5.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.00%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.20%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300003162	Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_21 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003308	Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031082	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_105347602	3300001661	Forest Soil	MKGTLIALAALSLLSVVTPASAQDGWRDRDYRWSDRDNRWGDNDWRRHNRSGITVDVGRSYGRSDCAVRVTKIQRPNGTMVTRRV
C688J18823_102442671	3300001686	Soil	MKGTLIALAAVSLLSIVTPASAQDGWRDRDHRWHDGDRHHRSGITVDVRRSYARSNCAVKVTKIHRNGKTITRRVRRCD*
Ga0006778J45830_10636671	3300003162	Avena Fatua Rhizosphere	RDRDHRWHDSDWNRRHHRSGITVDVGRSYARSNCAVKVTKIHRPNGTTVTRRVRSCD*
Ga0006777J48905_10297261	3300003308	Avena Fatua Rhizosphere	DRDHRWHDSDWNRRHHRSGITVDVGRSYARSNCAVKVTKIHRPNGTTVTRRVRSCD*
Ga0066397_101302521	3300004281	Tropical Forest Soil	MKATLIALAALSLFTVAMPASAQDYGWRNRDRDRDWRDHNWRRHHRSGVRLEFGRSYARSDCSVKITRVHRPNGTVVTRRVRSCDY*
Ga0066395_102551452	3300004633	Tropical Forest Soil	MKFTLIALAALSLFSVATPASAQDGWRDRDHRWHDNDWRHRDHRSGITVDVGRAYARGDCSVKTTRIHRSDGTTVTLAFDAATNRPWH
Ga0066388_1000353671	3300005332	Tropical Forest Soil	MKATLIALAALSLFTVAMPASAQDYGWRDRDRDRDWRDHDWRRHNRSGITVDVDRSYARGDCSVKVTRIHRPNGTVVTRRVRSCD*
Ga0066388_1003196531	3300005332	Tropical Forest Soil	MKAILIALATLSLFAAATPASAQDGWRDRDHRRHDRDWRHHHRSGISVDVGRSYARGNCAVKVTKVHRPNGTTVTRRVRSCD*
Ga0066388_1014507202	3300005332	Tropical Forest Soil	MKAILIALATLSLVSAATPASAQDGYRDRDYGRHDSDWRHRHHRSGITVDVGRSYARSNCAVKVTKIHRPNGTTVTRRVRRCD*
Ga0066388_1016954532	3300005332	Tropical Forest Soil	MKFTLIALAALSLFSVATPASAQDGWRDRDHRWHDNDWRHRDHRSGITVDVGRAYARGDCSVKTTRIHRSDGTTVTRRVRRCD*
Ga0066388_1037676912	3300005332	Tropical Forest Soil	MKATLIAMAALSLFTVAMPASAQDYGWRDRDHNWRDRDWDRRHRSGITVEVGRAYARDRDCAVRITRTQRPNGTVVTRRVRSCDY*
Ga0066388_1042287271	3300005332	Tropical Forest Soil	MKATLIALAAVSLLTTAMPASAQDYGWRDRDRDHNWRDHNWRRHDRSGLRLEFGRSYARGDCSMKVTRIHRPNGTVVTRRVRSCDR*
Ga0066701_105685321	3300005552	Soil	TPAFAQDYGWRDRDHGWRDDGWRDRDWRRHHRSGVTVDVDRSYARGDCSVRVTRDYRPNGTVVTRRVRSCDY*
Ga0066692_103329931	3300005555	Soil	MKATLIALAALSLFTVATPAFAQDYGWRDRDHGWRDDGWRDRDWRRHHRSGITVDVGRSYAREDCSVRVTRIQRPNGTVVTRRVRSCDY*
Ga0066905_1000732042	3300005713	Tropical Forest Soil	MKATLIAIAALSLFTVATPASAQDGWRHRDRDHGWRDHDWRRHHGSGIRVDIGRAYARGDCSVKVTRIHRPNGTVVTRRVRSCDY*
Ga0066905_1007685682	3300005713	Tropical Forest Soil	MKATLIAMAALSLLTMATPASAQDHGWRDRDHGWRDNDWRRHHRSGIRVDVGRAYARGDCSVKVTRIHRPNGTVVTRRVRSCDY*
Ga0066905_1007696941	3300005713	Tropical Forest Soil	MMKAFLISLAALSLLALVMPASAQDYGWRDRDHDNGWRHRHHRPGVTVDVGRSYARDCAVRITRIYRPNGTVVTRRVRRCD*
Ga0066905_1017398181	3300005713	Tropical Forest Soil	MKATLIALAALSLFTVAMPASAQDYGWRNRDRDRDWRDHNWRRHHRSGVRLEFGRSYARSDCSVKITRVHRPNGTVVTRRVRSCD*
Ga0066903_1032809632	3300005764	Tropical Forest Soil	MKATLIALAALSLFSVATPASAQDGWRDRDYRLHDNDWRRHHRSGVTVDVDRSYARGDCAVKITRIHRPNGTVVTRRVRSCD*
Ga0066903_1048178401	3300005764	Tropical Forest Soil	MKATLIAMAALSLFTVATPASAQDYGWRDRDHNWRDRDWDRRHRSGITVEVGRAFARDRDCAVRITRVERPNGTVVTRRVRSCDY*
Ga0081455_107290652	3300005937	Tabebuia Heterophylla Rhizosphere	MKVALVALAALSLFSVATPASAHDGWRDRDHRWHDNDWRRHHRSGVRVDIGRAYARGNCSVKTTRVHRSNGTTVTRRVRTCD*
Ga0081455_109272131	3300005937	Tabebuia Heterophylla Rhizosphere	MKGIFIALATLSLFAVATPASAQDWRHDNDWRRDHHRSGVTIDVGRSYARSRHCAVKVTKIHRNGKTVTRRVRTCD*
Ga0081540_12344391	3300005983	Tabebuia Heterophylla Rhizosphere	MKMKGTLIALAALSLFSVVTPASAQDWRDRHDNDWRRHHRSGITVNVDRSYARSHCAVKITKIHRNGKTITRRVRSCD*
Ga0066656_110860481	3300006034	Soil	MKATLIALAALSLLTVATPAFAQDYGWRDRDHGWRDDGWRDRDWRRHHRSGVTVDVDRSYARGDCSVRVTRDYRPNGTVVTRRVRSCDY*
Ga0066652_1012776111	3300006046	Soil	SVATPASAQDGWRDRDHRWHDSDWNRRHHRSGITVDVGRSYARSNCAVKVTKIHRPNGTTVTRRVRSCD*
Ga0070712_1011525151	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKVTLIALAALSLVSVAAPASAQDGWRDRDHRQHDRDWNHRHHRSGITVDVGRAYARGNCAVKVTKVHRPNGTTVTRRVRSCD*
Ga0079222_100445661	3300006755	Agricultural Soil	MKGPLIALAALSLVSVVTPASAQDGRWHDNDWRRHHRSGVTVDVGRSYARSNCAVKVTKIHRNGRTIIRRVRSCD*
Ga0079222_121785451	3300006755	Agricultural Soil	MKATLIAMAALSLLTVAMPASAQDYGWRDRDHNRRDHDWDRRHRSGITVDVGRAYARDRDCSVRITRVHRPNGTVVTRRVRSCD*
Ga0079220_111020991	3300006806	Agricultural Soil	MKGTLIALATLSLFAVATPASAKDRHDNDWRRHHHRSGVTVDVGRSYARSHCTMKVTKIHRNGKTITRRVRSCD*
Ga0079220_115867381	3300006806	Agricultural Soil	MKATLIALAAVSLLTVAMPASAQDYGWRDRDRDRDWRDHNWRRHDRSGLRLEFGRSYARGDCSMKVTRIHRPNGTVVTRRVRSCDY*
Ga0075425_1003673942	3300006854	Populus Rhizosphere	MKGTLIALATLSLLAVATPASAKDRHDNDWRRHHHRSGVTVDVGRSYARSHCTMKVTKIHRNGKTITRRVRSCG*
Ga0075425_1006855502	3300006854	Populus Rhizosphere	MKATLIALAALSLLSVATPASAQDGWRDRDHRQHDRDWRRHHRSGITVDVGRSYARGNCAMKVTKIHRPNGTTVTRRVRKCD*
Ga0075434_1007416903	3300006871	Populus Rhizosphere	TSSPPEENTMKGPLIALAALSLVSVVTPASAQDGRWHDNDWRRHHRSGVTVDVGRSYARSNCAVKVTKIHRNGRTIIRRVRSCD*
Ga0075434_1021524782	3300006871	Populus Rhizosphere	MKATLIALAALSLLSVATPASAQDGWRDRDHRQHDSDWRRHHRSGITVDVGRSYARGNCAMKVTKIHRPNGTTVTRRVRKCD*
Ga0075424_1016888821	3300006904	Populus Rhizosphere	KNAMKGTLIALATLSLFAVATPASAQDRHDNDWRRHHHRSGVTIDVGRSYARSHCTMKVTKIHRNGKTITRRVRSCG*
Ga0075436_1005209801	3300006914	Populus Rhizosphere	MKVALIALAALSLFSVATPASAQDGWRDRDHRWHDNDWRRHHRSGITVDVGRSYARSNCAVRITKVH
Ga0075436_1006702691	3300006914	Populus Rhizosphere	MKATLIALAALSLLSVATPASAQDGWRDRDHRQHDRDWRRHHRSGITVDVGRSYARGNCAMKVTKIHRPNGTTVTRRVRKC
Ga0099795_104917072	3300007788	Vadose Zone Soil	WRDRDYRWSDRDNRWGDNDWRRHNRSGITVDVGRSYGRSDCAVRVTKAYRNGRMITRRVRTCD*
Ga0111539_123992752	3300009094	Populus Rhizosphere	MKGTLIALATLSLFAIATPASAKDRHDNDWRRHHHRSGVTVDVGRSYARSHCTMKVTKIHRNGKTITRRVRSCG*
Ga0075418_115377262	3300009100	Populus Rhizosphere	MKTILIALATLSLFSAATPASAQDGWRDRDHRWHDRDWRRHHRSGITVDVGRSYARSNCAVRITKVHRP
Ga0099792_100118307	3300009143	Vadose Zone Soil	MKGTLIALAALSLLSVVTPASAQDGWRDRDYRWSDRDNRWGDNDWRRHHRPGITLDLGRSYARSDCAVRVTKEYRNGRMITRRVRTCD*
Ga0099792_100578763	3300009143	Vadose Zone Soil	MKAILIALAALSLVSVATPASAQDGWRDRDHRRHDNDWRRHHRSGITVDVGRSYARGNCSMKITTVHRSNGTTVTRRVRSCD*
Ga0075423_130293442	3300009162	Populus Rhizosphere	MKATLIALAALSLLSVATPASAQDGWRDRDHRQHDRDWRRHHRSGITVDVGRSYARGNCAMKVTKIHRPNGTTVT
Ga0126384_100861262	3300010046	Tropical Forest Soil	MMKASLIALAALSLLALATPASAQGYGWRDRDHDNGWRHRHHRPGVTVDVGRAYARDCAVRITRIHRPNGTVVTRRVRSCDY*
Ga0126382_100606442	3300010047	Tropical Forest Soil	MMKAFLISLAALSLLALVMPASAQDYGWRDRDHDNGWRHRHHRPGVTVDVGRSYARDCAVRITRIYRPNGSVVTRRVRRCD*
Ga0126382_101617181	3300010047	Tropical Forest Soil	MKATLIALAALSLLTVAMPASAQDYGWRDRDRDRDWRDHNWRRHDRSGLRLEFGRSYARGDCSMKVTRIYRPNGTVVTRRVRSCDY*
Ga0126382_104019741	3300010047	Tropical Forest Soil	VKAKKTLNLVTRGEDIMKATLIALAALSLFTVAMPASAQDYGWRHRDRDREWRDHDWRRHHRSGVRLEFGRTYARGDCSVKVTRIHRPNGTVVTRRVRSCD*
Ga0099796_100682143	3300010159	Vadose Zone Soil	MKGTLIALAALSLLSVVTPASAQDGWRDRDYRWSDRDNRWGDNDWRRHNRSGITVDVGRSYGRSDCAVRVTKIQRPNGTMVTRRVRSCE*
Ga0126370_100126381	3300010358	Tropical Forest Soil	MKVTLIAMAALSLFTVAMPASAQDYGWRDRDHNWRDHDWDRRHRSGITVDVGRAYARDRDCAVKITRIHRPNGTVVTRRVRSCD*
Ga0126370_116327342	3300010358	Tropical Forest Soil	WRDRDHNWRDRDWDRRHRSGITVEVGRAFARDRDCAVRITRVERPNGTVVTRRVRSCDY*
Ga0126372_102274772	3300010360	Tropical Forest Soil	MKATLIAMAALSLFTVATPASAQDYGWRDRDHNWRDHDWDRRHRSGITVDVGRAYARDRDCAVRITRIERPNGTVVTRRVRSCDY*
Ga0126372_107292102	3300010360	Tropical Forest Soil	MKAILIALAALSLVSVATPASAQDGYRDRDYRRHDSDWRHRHHRSGITVDVGRSYARGDCSVKTTRIHRSDGTTVTRRVRRCD*
Ga0126372_114892391	3300010360	Tropical Forest Soil	TPASAQDGRWHDNDWRRHHRSGVTVDVGRSYARSNCAVKVTKIHRNGRTVVRRVRTCD*
Ga0126377_100154337	3300010362	Tropical Forest Soil	MKATLIAIAALSLFTVATPASAQDGWRHRDRDHGWRDHDWRRHHRSGIRVDIGRAYARGDCSVKVTRIHRPNGTVVTRRVRSCDY*
Ga0126377_101505824	3300010362	Tropical Forest Soil	MKGTLIALAAVALVSVVTPASAQDWRHDRDWRRHHHRSGVTVDIGRSYARSHCSVKVTKIHRHGRTVTRRVRTCD*
Ga0126377_106806061	3300010362	Tropical Forest Soil	MKATLIAIAALSLFTVATPASAEDGWRHRDRDYGWRDHDWRRHHRSGIRVDIGRAYARGDCSVKVTKIHRPNGTVVTRRVRSCDY*
Ga0126377_117094012	3300010362	Tropical Forest Soil	MKVTLVALAALSLLSVVTPASAQDGWRDRDHRWHDSDRRHHHRSGITVDVGRAYARSNCSVKVTKVHRPNGTTVTRRVRRCD*
Ga0126377_117214051	3300010362	Tropical Forest Soil	MMKAFLISLAALSLLALVMPASAQDYGWRDRDHDNGWRHRHHRPGVTVDVGRSYARDCAVRITRIHRPNGTVVTRRVRRCD*
Ga0126377_120073571	3300010362	Tropical Forest Soil	IVTRGEDTMKATLIALAALSLLTVAMPASAQDYGWRDRDRDRDWRDQNWRRHDRSGLRLEFGRSYARGDCSMKVTRIYRPNGTVVTRRVRSCDY*
Ga0126379_104869592	3300010366	Tropical Forest Soil	MKATLIALAALSLFTVAMPASAQDYGWRDRDHNWRDRDWDRRHRSGITVEVGRAFARDRDCAVRITRVERPNGTVVTRRVRSCDY*
Ga0126379_116684121	3300010366	Tropical Forest Soil	MKVTLIALAALSLCSVATPASAQDGWRDRDHRWHDNDWRHRDHRSGITVDVGRAYARGDCSVKTTRIHRSDGTTVTRRVRRCD*
Ga0126383_117306052	3300010398	Tropical Forest Soil	MKFTLIALAALSLCSVATPASAQDGWRDRDHRWHDNDWRHRDHRSGITVDVGRAYARGDCSVKTTRIHRSDGTTVTRRVRRCD*
Ga0137382_104337371	3300012200	Vadose Zone Soil	MKAILIALAALSLVSVATPASAQDGWRDRDHRRHDNDWRRHQRSGITVDVGRSYARDNCSMKVTRVHRPNGTTVTRRVRSCD*
Ga0137363_103505861	3300012202	Vadose Zone Soil	MKATLIALAALSLFSVATPASAQDGWRDRDHRSYDSDWRHRHRSGIRVDVDRAYARGDCSVKVTRTYRSNGTTVTRRVRSCD*
Ga0137399_115704032	3300012203	Vadose Zone Soil	IALAALSLVSVATPASAQDGWRDRDHRRHDNDWRRHQRSGITVDVGRSYARDNCSMKVTTVHRSNGTTVTRRVRSCD*
Ga0137379_100333025	3300012209	Vadose Zone Soil	MKGTLIVLAALTLFSVVTPASAQDGWRDRDYRWNDRDNRWNDSDWRRNHRSGITVDVGRSFARSDCSVRVTRIQRPNGTMVTRRVRSCD*
Ga0137377_108050982	3300012211	Vadose Zone Soil	MKGTLIVLAALTLFSVVTPASAQDGWRDRDYRWNDRDNRWNDSDWRRNHRSGITVDVGRSFARSDCSVRVTRI
Ga0150985_1005088733	3300012212	Avena Fatua Rhizosphere	GENAMKGTLIALATLSLFAVATPASAQDRHDNDWRRHHHRSGVTIDVGRSYARSHCAMKVTKIHRNGKTITRRVRSCG*
Ga0150985_1014439902	3300012212	Avena Fatua Rhizosphere	RRKAMKGTLIALATLSLFAVVTPASAQDRHDNDWRRHHHRSGVTIDVGRSYARSHCAVKVTKIHRNGKTITRRVRSCG*
Ga0150985_1078118071	3300012212	Avena Fatua Rhizosphere	EHMKAALIAIAALSLFTVTTPASAQDYGWRDGTWHEHSWRDRDDWRDRDHRRHGVTVDVGRAYARDCAVRVTKRYRADGTVVTRRVRSCED*
Ga0150985_1085513632	3300012212	Avena Fatua Rhizosphere	RTRMKGTLIALAALSLLSVVTPASAQDGWRDRDYRWGDRDNRWGDNDWRRHNRSGITVDVGRSYGRSDCAVRVTKEYRNGRTITRRVRTCD*
Ga0150985_1167469192	3300012212	Avena Fatua Rhizosphere	MKATLIALAALSLLSVATPASAQDGWRDRDHRWHDSDWNRRHHRSGITVDVGRSYARSNCAVKVTKIHRPNGTTVTRRVRSCD*
Ga0150985_1191761272	3300012212	Avena Fatua Rhizosphere	RTPMKGTLIALAALSLFSVVTPASAQDGWRDRDYRWGDSDWRNDWRRHNRSGITVDVDRSYARSDCAVRVTKIYRNGRTITRRVRTCD*
Ga0150984_1098390511	3300012469	Avena Fatua Rhizosphere	MKGTLIAMAAVALFSVVTPASALDGRRHDSDWRRHHRSGITVDVGRSYARSNCAVKVTKIHRNGKTVTRRVRRCD*
Ga0150984_1139449611	3300012469	Avena Fatua Rhizosphere	NAMKGTLIALAALSLFSLATPATAQDGRRHDSDWRRHHRSGITVDVGRSYARSNCAVKVTKIHRNGKTITRRVRRCD*
Ga0150984_1199431051	3300012469	Avena Fatua Rhizosphere	EKHMKAALIAVAAFSLFTVTTPASAQDYGWRDGNWHEHSRRDRDDWRDRDHRRYGVTVDVGRAYARDCAVRVTKRYRADGTVVTRRVRSCED*
Ga0150984_1223369471	3300012469	Avena Fatua Rhizosphere	KAMKGTLIALATLSLFAVATPASAQDRHDNDWRRHHHRSGVTIDVGRSYARSHCAMKVTKIHRNGKTITRRVRSCG*
Ga0150984_1235085861	3300012469	Avena Fatua Rhizosphere	SSDLTMKATLIALAALSLFSVVTPASAQDGWRDRDHRWHDSNWRRHHRSGVTFDVRRSYARGDCSVRVTKIYRHGRTITRRVRTCD*
Ga0137398_106486122	3300012683	Vadose Zone Soil	MKAILIALAALSLVSVATPASAQDGWRDRDHRRHDNDWRRHQRSGITVDVGRSYARDNCSMKVTTVHRSNGTTVTRRVRSCD*
Ga0137397_100543377	3300012685	Vadose Zone Soil	MKGTLIALAALSLLSVATPASAQDGWRDRDHRWHDGDRHHRSGITVDVGRSYARSNCSMKVTKIYRNGKTITRRVRTCD*
Ga0137397_106702551	3300012685	Vadose Zone Soil	EALNLVTRGERTMKAILIALAALSLVSVATPASAQDGWRDRDHRRHDNDWRRHHRSGITVDVGRSYARSNCAVKITKIHRSNGTTVTRRVRSCD*
Ga0137394_113981652	3300012922	Vadose Zone Soil	MKGTLIALAALSLLSVVTPASAQDGWRDRDYRWSDRDNHWGDNDWRRHHRPGITLDLGRSYARSDCAVRVTKEYRNGRMITRRVRTCD*
Ga0137416_108923011	3300012927	Vadose Zone Soil	MKGTLIALAALSLLSVVTPASAQDGWRDRDYRWSDSDNRWGDNDWRRHHRPGITLDLGRSYARSDCAVRVTKEYRNGRMITRRVRTCD*
Ga0137404_102995242	3300012929	Vadose Zone Soil	MKAILIALAALSLVSVATPASAQDGWRDRDHRRHDNDWRRHHRSGITVDVGRSYARSNCAVKVTKIHRSNGTTVTRRVRSCD*
Ga0137404_106041491	3300012929	Vadose Zone Soil	MKGTLIALAALSLLSVVTPASAQDGWRDRDYRWGDRDNRWGDNDWRRHNRSGITVDVGRSYGRSDCAVRVTKEYRNGRTITRRVRTCD*
Ga0137407_105312382	3300012930	Vadose Zone Soil	MKGTLIALAALSLLSVVTPASAQDGWRDRDYRWGDRDNRWGDNDWRRHNRSGITVDVGRSYGRSDCAVRVTKEYRNGRTITRRVRSCD*
Ga0137407_106940592	3300012930	Vadose Zone Soil	MKATLIALAALSLFSVATPASAQDGWRDRDHRWRDSDWRHRDRSGIRVDVDRSYARGDCSVKVTRTYRSNGTTVTRRVRSCD*
Ga0137407_110612021	3300012930	Vadose Zone Soil	MKGTLIALAALSLLSVVTPASAQDWRRHDNDWRRHHNRSGITVDVGRSFARSNCAVKVTKIHRNGQTVTRRVRRCD*
Ga0126375_101734201	3300012948	Tropical Forest Soil	MKATLIALAALSLLTVATPTFAQDHGWRDRDHGWRDNNWRRHHRSGVRLEFGRSYARGDCSVRITRIHRPNGTVVTRRVRRCD*
Ga0126375_109121211	3300012948	Tropical Forest Soil	IALAALSLLSVATPASAQDGWRDRDHRRHDSDCNHRHHRSGITVDVGRAYARGNCDVKVTKIRRPNGTTVTRRVRRCD*
Ga0126375_115727091	3300012948	Tropical Forest Soil	MKGTLIALAAVALVSVVTPASAQDWRHDSDWRRHHHRSGVTIDVGRSYARSHCSVKVTKIHR
Ga0126375_116161991	3300012948	Tropical Forest Soil	MKATLIAMAALSLFTIAMPASAQDYGWRDRDHNWRDRDWDRRHRSGITVEVGRAFARDRDCAVRITRVERPNGTVVTRRVRSCDY*
Ga0126375_121135751	3300012948	Tropical Forest Soil	MKGPLIALAALSLVSVVTPASAQDGRWHDNDWRRHHRSGVTVDVGRSYARSNCAVKVTKIHRNGRTVVR
Ga0126369_113345862	3300012971	Tropical Forest Soil	MKATLIGLAALSLLSVVTPASAQDYGWRDRDHDWRYRHHRPGITLDLGRTYARGDCSVRVTRIHRPNGTVVTRRVRSCD*
Ga0157376_126732091	3300014969	Miscanthus Rhizosphere	MKGTLIALAAVSLLSVVTPASAQDGWRDRDHRWHDSDWRRHHRSGITVDVGRSYARSDCAVRVTKVYRNGRTITRRVRTCY*
Ga0137409_102366592	3300015245	Vadose Zone Soil	MKGTLIALAALSLLSVATPASAQDGWRDRDHRRHDSDWRRHHRPGITLDLGRSYARSDCAVRVTKVYRNGRMITRRVRTCD*
Ga0184604_100790842	3300018000	Groundwater Sediment	MKAILIALAALSLVSVATPASAQDGWRDRDHRRHDNDWRRHHRSGITVDVGRSYARGNCSMKITKIHRPNGTTVTRRVRSCD
Ga0184605_102202472	3300018027	Groundwater Sediment	MKAILIALAALSLVSVATPASAQDGWRDRDHRRHDNDWSRHHRSGITVDVGRSYARSNCAVKVTKIHRSNGTTVTRRVRSCD
Ga0184608_101319231	3300018028	Groundwater Sediment	MKGTLLALAALSLLSVATPAAAQDGWRDRDHRWHDGDRHHRSGITVDVGRSYARSNCSMKVTKIYRNGKTITRRVRTCD
Ga0187765_112837731	3300018060	Tropical Peatland	MKATFIAAAALSLLAVATPASAQDHGWRHRHHHSGVTVDVGRSYARANCSVRITKVHRPNGTVVTRRVRRCD
Ga0184619_102071981	3300018061	Groundwater Sediment	MKAILIALAALSLVSVATPASAQDGWRDRDHRRHDNDWRRHHRSGITVDVGRSYARSNCAVKVTKIHRSNGTTVTRRVRSCD
Ga0137408_11869971	3300019789	Vadose Zone Soil	MKGTLIALAALSLLSVVTPASAQDGWRDRDYRWGDRDNRWGDNDWRRHNRSGITVDVGRSYGRSDCAVRVTKEYRNGRTITRRVRSCD
Ga0179594_100625632	3300020170	Vadose Zone Soil	MKGTLIALAALSLLAVVTPASAQDGWRDRDQRWHDGDRGRHHRSGITVDVGRSFARSNCAVKVTKIHRNGQTVTRRVRSCD
Ga0126371_115448781	3300021560	Tropical Forest Soil	MKATLIALAALSLFSVATPASAQDGWRDRDHRLHDSDWRRHHRSGITVDVGRSYARGNCAMKVTKIHRPNGTIVTRRVRSCDY
Ga0222622_105684132	3300022756	Groundwater Sediment	MKGTLIALAALSLLSVATPASAQDGWRDRDHRWHDGDRHHRSGITVDVGRSYARSNCSMKVTKIYRNGKTITRRVRTCD
Ga0179587_109971972	3300026557	Vadose Zone Soil	MKAILIAFAALSLVSVATPASAQDGWRDRDHRRHDNDWRRHHRSGITVDVGRSYARGNCSMKVTRVHRSNGTTVTRRVRSCDE
Ga0208981_11813021	3300027669	Forest Soil	MKGTLIALAALSLLAVVTPASAQDGWRDRDQRWHDGDRGRHHRSGITVDVGRSFARSNCAVKVTKIHRNG
Ga0209073_102218091	3300027765	Agricultural Soil	MKGPLIALAALSLVSVVTPASAQDGRWHDNDWRRHHRSGVTVDVGRSYARSNCAVKVTKIHRNGRTIIRRVRSCD
Ga0209177_102597061	3300027775	Agricultural Soil	MKGPLIALAALSLVSVVTPASAQDGRWHDNDWRRHHRSGVTVDVGRSYARSNCAVKVTKIHRNGRTIIR
Ga0209488_100143945	3300027903	Vadose Zone Soil	MKAILIALAALSLVSVATPASAQDGWRDRDHRRHDNDWRRHQRSGITVDVGRSYARDNCSMKVTTVHRSNGTTVTRRVRSCD
Ga0207428_104453602	3300027907	Populus Rhizosphere	MKVALIALAALSLFSVATPASAQDGWRDRDHRWHDNDWRRHHRSGITVDVGRSYARSNCAVRITKVHRPNGTTVTRRVRKCD
Ga0137415_100543503	3300028536	Vadose Zone Soil	MKATLIALAALSLFSVATPASAQDGWRDRDHRSYDSDWRHRHRSGIRVDVDRAYARGDCAVKVTTIHRSNGTTVTRRVRSCD
Ga0137415_104851722	3300028536	Vadose Zone Soil	MKGTLIALAALSLLSVVTPASAQDGWRDRDYRWRDRDNRWGDNDWRRHHRPGITLDLGRSYARSDCAVRVTKEYRNGRMITRRVRTCD
Ga0308203_10744151	3300030829	Soil	MKGTLLALAAVSLLSVVTPASAQEWRHDNDWRRDHHRSGVTVDVGRSYARSNCHVKVTKIYRNGKTITRRVRTCD
Ga0308200_10830062	3300030905	Soil	GEHAMKATLVALAALSLLSIATPASAQDGWRDRDHRWHDSDWNRRHHRSGITVDVGRSYARSNCAVKVTKIHRPNGTTVTRRVRSCD
Ga0308192_10904961	3300031082	Soil	EHAMKATLVALAALSLLSIATPASAQDGWRDRDHRWHDSDWNRRHHRSGITVDVGRSYARSNCAVKVTKIHRPNGTTVTRRVRSCD
Ga0307501_100018432	3300031152	Soil	MKGMLIALATLSLFAVATPAFAQDRHDNDWRRHHHRSGVTIDVGRSYARSHCAMKVTKIHRNGKTITRRVRSCG
Ga0307501_102388911	3300031152	Soil	MKGTVIALAAVALFSVVTPASAQDRWRDRDNGWHDGDRGRHNRSGITVDVGRSYARSNCHMKVTKIYRNGNTITRRVRTCD
Ga0307499_100261322	3300031184	Soil	MKATLIALAALSLLSVATPASAQDGWRDRDHRRHDSDWNHRHHRSGISVDVGRSYARGNCAVKVTKVHRPNGTT
Ga0307500_100643262	3300031198	Soil	MKGTLISLAAVSLLSVVTPASAQDGWRDRDNRWHEGDRHHRSGITVDVGRSYARSNCYMKVTKVYRNGRTITRRVRTCD
Ga0307469_114870221	3300031720	Hardwood Forest Soil	MKGTLIALAAVSLFSVVTPASAQDWRDRHDNDWRRHHRPGITLNVDRSYARSSHCAVKVTKIYRNGKTITRRVRSCD
Ga0307470_102178641	3300032174	Hardwood Forest Soil	MKGTLIALAALSLFSLATPATAQDGRRHDSDWRRNHHGSGITVDVGRSYARSHCAVKVTKIYRNGKTITRRVRRCD
Ga0307470_110635092	3300032174	Hardwood Forest Soil	MKVALVALAALSLVSVATPASAQDGWRDRDHRQHDSDWRHRHHRSGITVDVGRSYARGNCAVKVTKIHRPNGTTVTRRVRSCD
Ga0307471_1028321951	3300032180	Hardwood Forest Soil	MKATLIALASVSLLAVAMPASAQEYGRDRDHGWRDHDSRRHHRSGITVDVGRAYARDCAVRITKIHRPNGTVVTRRVRSCDR
Ga0307472_1012761592	3300032205	Hardwood Forest Soil	MKVALVALAALSLVSVVTPASAQDGWRDRDHRQHDSDWRHRHHRSGITVDVGRSYARGNCAVKVTKIHRPNGTTVTRRVRSCD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067972

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences