Metagenome / Metatranscriptome Family F067218

Basic Information
Family ID	F067218
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	71 residues
Representative Sequence	MAKEITLAELQTMAKRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKR
Number of Associated Samples	91
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.23 %
% of genes near scaffold ends (potentially truncated)	22.22 %
% of genes from short scaffolds (< 2000 bps)	73.81 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Most Common Taxonomy
Group	Bacteria (56.349 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (20.635 % of family members)
Environment Ontology (ENVO)	Unclassified (36.508 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.651 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.69% β-sheet: 0.00% Coil/Unstructured: 47.31%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF01425	Amidase	52.38
PF03401	TctC	8.73
PF01979	Amidohydro_1	4.76
PF02738	MoCoBD_1	1.59
PF09359	VTC	0.79
PF04986	Y2_Tnp	0.79
PF00156	Pribosyltran	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	52.38
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	8.73

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.35 %
Unclassified	root	N/A	43.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.35 %
Unclassified	root	N/A	43.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.35 %
Unclassified	root	N/A	43.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.08 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	5.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5.56 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.17 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.17 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.59 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16727289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2131	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig115326	Not Available	652	Open in IMG/M
2162886007\|SwRhRL2b_contig_513289	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
2209111006\|2214682982	Not Available	512	Open in IMG/M
2228664022\|INPgaii200_c0979981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3681	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101658294	Not Available	946	Open in IMG/M
3300000559\|F14TC_100463775	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300000559\|F14TC_100534493	All Organisms → cellular organisms → Bacteria	1736	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1020154	Not Available	723	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10097115	Not Available	728	Open in IMG/M
3300001431\|F14TB_101981810	Not Available	542	Open in IMG/M
3300002899\|JGIcombinedJ43975_10111236	Not Available	509	Open in IMG/M
3300003911\|JGI25405J52794_10001781	All Organisms → cellular organisms → Bacteria	3600	Open in IMG/M
3300004267\|Ga0066396_10016274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	957	Open in IMG/M
3300004268\|Ga0066398_10000543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2823	Open in IMG/M
3300005186\|Ga0066676_11014112	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300005294\|Ga0065705_10771437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300005295\|Ga0065707_10364230	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300005332\|Ga0066388_100102212	All Organisms → cellular organisms → Bacteria → Proteobacteria	3334	Open in IMG/M
3300005332\|Ga0066388_101374288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1224	Open in IMG/M
3300005332\|Ga0066388_104392805	Not Available	718	Open in IMG/M
3300005332\|Ga0066388_104546431	Not Available	706	Open in IMG/M
3300005332\|Ga0066388_105504491	Not Available	641	Open in IMG/M
3300005332\|Ga0066388_106442427	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300005332\|Ga0066388_106663717	Not Available	582	Open in IMG/M
3300005713\|Ga0066905_100091177	All Organisms → cellular organisms → Bacteria	2038	Open in IMG/M
3300005713\|Ga0066905_100628809	Not Available	912	Open in IMG/M
3300005713\|Ga0066905_100881975	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300005713\|Ga0066905_101208003	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300005713\|Ga0066905_102142188	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005764\|Ga0066903_104669749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	729	Open in IMG/M
3300005937\|Ga0081455_10297406	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300006049\|Ga0075417_10039774	Not Available	1989	Open in IMG/M
3300006049\|Ga0075417_10412524	All Organisms → cellular organisms → Bacteria → Proteobacteria	669	Open in IMG/M
3300006853\|Ga0075420_100618075	All Organisms → cellular organisms → Bacteria → Proteobacteria	935	Open in IMG/M
3300007076\|Ga0075435_100993622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	733	Open in IMG/M
3300009100\|Ga0075418_10599665	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300009137\|Ga0066709_100801930	Not Available	1364	Open in IMG/M
3300009147\|Ga0114129_10685092	All Organisms → cellular organisms → Bacteria	1319	Open in IMG/M
3300009147\|Ga0114129_11415826	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300009157\|Ga0105092_10052364	Not Available	2192	Open in IMG/M
3300009157\|Ga0105092_10484433	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	708	Open in IMG/M
3300009162\|Ga0075423_10224919	All Organisms → cellular organisms → Bacteria	1966	Open in IMG/M
3300009610\|Ga0105340_1122558	Not Available	1057	Open in IMG/M
3300009792\|Ga0126374_10173144	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300009792\|Ga0126374_10282994	All Organisms → cellular organisms → Bacteria → Proteobacteria	1101	Open in IMG/M
3300009799\|Ga0105075_1064665	Not Available	502	Open in IMG/M
3300009807\|Ga0105061_1000953	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2933	Open in IMG/M
3300009810\|Ga0105088_1035424	Not Available	816	Open in IMG/M
3300009815\|Ga0105070_1008145	Not Available	1689	Open in IMG/M
3300009816\|Ga0105076_1000915	All Organisms → cellular organisms → Bacteria → Proteobacteria	3683	Open in IMG/M
3300009817\|Ga0105062_1037176	Not Available	865	Open in IMG/M
3300009818\|Ga0105072_1002827	All Organisms → cellular organisms → Bacteria → Proteobacteria	2770	Open in IMG/M
3300009836\|Ga0105068_1000742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4327	Open in IMG/M
3300010043\|Ga0126380_10509903	Not Available	925	Open in IMG/M
3300010043\|Ga0126380_10667615	Not Available	830	Open in IMG/M
3300010046\|Ga0126384_12116174	Not Available	540	Open in IMG/M
3300010046\|Ga0126384_12364854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300010047\|Ga0126382_10008151	All Organisms → cellular organisms → Bacteria → Proteobacteria	4898	Open in IMG/M
3300010047\|Ga0126382_10619831	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300010047\|Ga0126382_10695858	Not Available	852	Open in IMG/M
3300010047\|Ga0126382_10761918	Not Available	820	Open in IMG/M
3300010047\|Ga0126382_11088947	Not Available	707	Open in IMG/M
3300010047\|Ga0126382_11971328	Not Available	555	Open in IMG/M
3300010358\|Ga0126370_10559932	Not Available	979	Open in IMG/M
3300010358\|Ga0126370_11403249	Not Available	659	Open in IMG/M
3300010362\|Ga0126377_10149626	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300010362\|Ga0126377_10202986	All Organisms → cellular organisms → Bacteria	1902	Open in IMG/M
3300010362\|Ga0126377_10656050	Not Available	1099	Open in IMG/M
3300010362\|Ga0126377_10667886	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300010362\|Ga0126377_11302144	Not Available	798	Open in IMG/M
3300010362\|Ga0126377_12524276	Not Available	589	Open in IMG/M
3300010366\|Ga0126379_10241562	Not Available	1771	Open in IMG/M
3300010366\|Ga0126379_11728314	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	730	Open in IMG/M
3300010376\|Ga0126381_100773875	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300010398\|Ga0126383_10634918	Not Available	1142	Open in IMG/M
3300012159\|Ga0137344_1071872	Not Available	634	Open in IMG/M
3300012200\|Ga0137382_11214682	Not Available	535	Open in IMG/M
3300012209\|Ga0137379_10174636	All Organisms → cellular organisms → Bacteria	2061	Open in IMG/M
3300012350\|Ga0137372_10004933	All Organisms → cellular organisms → Bacteria → Proteobacteria	13025	Open in IMG/M
3300012353\|Ga0137367_10406041	All Organisms → cellular organisms → Bacteria → Proteobacteria	965	Open in IMG/M
3300012685\|Ga0137397_10337810	All Organisms → cellular organisms → Bacteria → Proteobacteria	1122	Open in IMG/M
3300012685\|Ga0137397_10344675	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300012922\|Ga0137394_10035948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4046	Open in IMG/M
3300012922\|Ga0137394_10135888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2088	Open in IMG/M
3300012929\|Ga0137404_11580172	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	608	Open in IMG/M
3300012930\|Ga0137407_10282175	Not Available	1514	Open in IMG/M
3300012944\|Ga0137410_10643190	Not Available	880	Open in IMG/M
3300012948\|Ga0126375_11211650	Not Available	629	Open in IMG/M
3300012948\|Ga0126375_12093039	Not Available	503	Open in IMG/M
3300015245\|Ga0137409_10116492	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2466	Open in IMG/M
3300015371\|Ga0132258_10757780	All Organisms → cellular organisms → Bacteria → Proteobacteria	2446	Open in IMG/M
3300015373\|Ga0132257_103310211	Not Available	587	Open in IMG/M
3300018028\|Ga0184608_10409962	Not Available	587	Open in IMG/M
3300018052\|Ga0184638_1035582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1802	Open in IMG/M
3300018053\|Ga0184626_10007233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4270	Open in IMG/M
3300018053\|Ga0184626_10050702	All Organisms → cellular organisms → Bacteria	1737	Open in IMG/M
3300018054\|Ga0184621_10024001	All Organisms → cellular organisms → Bacteria → Proteobacteria	1900	Open in IMG/M
3300018064\|Ga0187773_10144769	All Organisms → cellular organisms → Bacteria → Proteobacteria	1220	Open in IMG/M
3300018072\|Ga0184635_10014588	All Organisms → cellular organisms → Bacteria	2805	Open in IMG/M
3300018073\|Ga0184624_10063182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1526	Open in IMG/M
3300018081\|Ga0184625_10256067	Not Available	916	Open in IMG/M
3300022534\|Ga0224452_1030748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1547	Open in IMG/M
3300027209\|Ga0209875_1002881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2152	Open in IMG/M
3300027277\|Ga0209846_1018053	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300027379\|Ga0209842_1000080	All Organisms → cellular organisms → Bacteria → Proteobacteria	15126	Open in IMG/M
3300027490\|Ga0209899_1012384	Not Available	1946	Open in IMG/M
3300027561\|Ga0209887_1000019	All Organisms → cellular organisms → Bacteria → Proteobacteria	46504	Open in IMG/M
3300027722\|Ga0209819_10266416	Not Available	593	Open in IMG/M
3300027909\|Ga0209382_11037863	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300028420\|Ga0210366_10048916	Not Available	1364	Open in IMG/M
3300031720\|Ga0307469_10524418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1044	Open in IMG/M
3300031740\|Ga0307468_101496608	Not Available	625	Open in IMG/M
3300031820\|Ga0307473_10836529	Not Available	659	Open in IMG/M
3300032013\|Ga0310906_10295224	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1032	Open in IMG/M
3300032075\|Ga0310890_10073826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2047	Open in IMG/M
3300032180\|Ga0307471_101104158	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300033433\|Ga0326726_10058811	All Organisms → cellular organisms → Bacteria	3374	Open in IMG/M
3300034115\|Ga0364945_0043809	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1235	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.51%
Host-Associated	Host-Associated	13.49%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.60%
Plants	Host-Associated → Plants	13.49%
Aquatic	Environmental → Aquatic	11.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.02%
Sediment	Environmental → Aquatic → Sediment	8.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.35%
Freshwater	Environmental → Aquatic → Freshwater	2.38%
Marine	Environmental → Aquatic → Marine	0.79%
Peat	Environmental → Terrestrial → Peat	0.79%
Floodplain	Environmental → Terrestrial → Floodplain	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.03%
Loam	Environmental → Terrestrial → Soil → Loam	15.08%
Sand	Environmental → Terrestrial → Soil → Sand	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.17%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.38%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.90%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.17%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.38%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.38%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.90%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	11.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.32%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.14%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.38%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.38%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.38%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.59%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.59%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.79%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009799	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012513	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300027209	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028420	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.641 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03546900	2088090014	Soil	MXENMAKDITLAELQTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAVFVASRTEKR
KansclcFeb2_04288310	2124908045	Soil	MAKEITLAQLQKMAERSGLKLSDEDLEKLLPGVNRSHHQLLELRELITDSIEPAAAFVTSRTEKR
SwRhRL2b_0678.00006980	2162886007	Switchgrass Rhizosphere	LIRFEHDNIRAVGRNMAKEITLAELQIVAKRSGLQLTDEELAKLLPGVNRSHHQSLELRELITDSIEPAAAFVASRTEKR
2213701849	2209111006	Arabidopsis Rhizosphere	MSKEITLAKLQTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKN
INPgaii200_09799812	2228664022	Soil	MAKDITLAELQTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAVFVASRTEKR
INPhiseqgaiiFebDRAFT_1016582942	3300000364	Soil	NMAKEITLAELQTVAKRSGLQLTDEELEKLLPGVNRXHHXLLELRELITDSIEPAAAFVASRTEKR*
F14TC_1004637752	3300000559	Soil	LIRFEHDNIRAVGRNMAKEITLAELQIVAKRSGLQLTDEELAKLLPGVNRSHHQSLELRELITDSIEPAAAFVASRTEKR*
F14TC_1005344932	3300000559	Soil	MAKESTLAELRAMAKRSGLQLTDEELEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKR*
KanNP_Total_noBrdU_T14TCDRAFT_10201542	3300000596	Soil	FEHDNIRAVGRNMAKEITLAELQIVAKRSGLQLTDEELAKLLPGVNRSHHQSLELRELITDSIEPAAAFVASRTEKR*
AF_2010_repII_A1DRAFT_100971151	3300000597	Forest Soil	MAKEITLAQLQMMVERSGLKLTDEEVEKLLPGVNRSHHQILELRELITDNIEPATAFAASRTKKS*
JGI1027J12803_1056701042	3300000955	Soil	MAKESTLAELRAMAKRSGLQLTDEELEKLLPGVNRSYNQILELRGLITDRTE
F14TB_1019818101	3300001431	Soil	MAKESTLAELRAMAKRSGLQLTDEELEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKR
JGIcombinedJ43975_101112361	3300002899	Soil	MAKEITLAELQIVAKRSGLQLTDEELAKLLPGVNRSHHQSLELRELITDSIEPAAAFVASRTEKR*
JGI25405J52794_100017812	3300003911	Tabebuia Heterophylla Rhizosphere	MAKEITLAQLQTMVERSGLKLTGEEVEKLLPGINRSHNQIMELRELITDSIEPASAFAASRIEKEVANRWRS*
Ga0066396_100162742	3300004267	Tropical Forest Soil	MAKEITLAQLQTMAERSGLKLTDEEVEKLLPGVNRSHHQILELRELITDNIEPATAFAASRTKKS*
Ga0066398_100005433	3300004268	Tropical Forest Soil	MVKELTLAQLRMMAERSGLKLTDEEVGKLLPGVNRSHNQILELRKLITDSIEPASAFAASRTEKK*
Ga0066676_110141121	3300005186	Soil	GENMAKESTLAELRAMAKRSGLQLTDEELEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKR*
Ga0065705_107714371	3300005294	Switchgrass Rhizosphere	MAKEITLAELQTVAKRSGLQLTDEELEKLLPGVNRSDHQLLELRELITDSIEPAAAFVVSRTEKR*
Ga0065705_108183532	3300005294	Switchgrass Rhizosphere	STCPSFSANDSMDIGLACFERDNIWALGENMAKEIMLVELQTMAARSGLQLTDEELEKLLPGVNRSYDQILELRGLITDRTEPAAAFVVSRTENR*
Ga0065707_103642302	3300005295	Switchgrass Rhizosphere	MAKEITLAELQTVAKRSGLQLTDEELEKLLPGVNRSHHQLLELRELITDSIEPAAAFVVSRTEKR*
Ga0066388_1001022123	3300005332	Tropical Forest Soil	MAKEITLARLQKMVEQSGLKLTDEEVEKLLPGVNRSQNQVLELREVITDSIEPATAFAASRTEKR*
Ga0066388_1013742881	3300005332	Tropical Forest Soil	MAKEITLAQLQTMVERSGLNLTDEEVEKLLPGVNRSHNQILELRELITDNIEPATAFAASRTKKR*
Ga0066388_1043928052	3300005332	Tropical Forest Soil	MAKEITLAQLQTMVERSGLKLTDEEVEKLLPGVNRSHHQILELRELITDNIEPATAFAASRTKKS*
Ga0066388_1045464312	3300005332	Tropical Forest Soil	MAKEITLAQLQMMAERSGLKLTYEEVEKLLPGVNRSHNQILELRKLIADSIEPASAFAASRTAKR*
Ga0066388_1055044912	3300005332	Tropical Forest Soil	MAERSGLQLTDEDVEKLLPGVNRSHNQILELRKLITDSIEPASAFAAFRTEKR*
Ga0066388_1064424272	3300005332	Tropical Forest Soil	AELQTVAKRSGLQLTDEELEKLLPGVNRSHHQVLELRELITDSIEPAATFVASQTEKR*
Ga0066388_1066637172	3300005332	Tropical Forest Soil	MDCANNATFGCGMEKEIALAQLERITERSGLKLTLEELQKLLPGVRRSQHQISELREIVTDTIEPATTFVASRTEKRLSADVSN*
Ga0066905_1000911773	3300005713	Tropical Forest Soil	VARATTAGLLKKNMVKEITLIELQTMASRSGLSLSGEELEKLLPGVNRSRYQILELRELIVDSTEPAAAFAASGTEKR*
Ga0066905_1006288091	3300005713	Tropical Forest Soil	KEITLAQLQTMVERSGLKLTEEEVEKLLPGVNRSHNQILELRELITDSIEPATAFAASRTEKR*
Ga0066905_1008819751	3300005713	Tropical Forest Soil	MAKEITLAQLQMMAERSGLKLTYEEVEKLLPGVNRSQNQILELRELITDSIEPASAFAAS
Ga0066905_1012080031	3300005713	Tropical Forest Soil	MAKEITFAELRTMASRAGLSLSDRELEKLLPGVNRSHIQALELRELVTDSIEPAATFAASRTKKR*
Ga0066905_1021421882	3300005713	Tropical Forest Soil	MAKEITLAQLQRMVEQSGLKLTEEEVEKLLPGVNRSQNQILELRELITDSIEPATAFAASRTEKRLPTDGAH*
Ga0066903_1046697492	3300005764	Tropical Forest Soil	MNKEITLAQLQTMVERSGLNLTDEEVEKLLPGVNRSHNQILELRELITDNIEPATAFA
Ga0081455_102974062	3300005937	Tabebuia Heterophylla Rhizosphere	MAKEITPAQLQTMAERSGLKLTEEEVEKLLPGVNRSHNQILELRELITDSIEPATALAASRTEKR*
Ga0075417_100397742	3300006049	Populus Rhizosphere	MAKEITLAQLQKMAERSGLKLSDEDLEKLLPGVNRSHHQLLELRELITDSIEPAAAFVTSRTEKR*
Ga0075417_104125241	3300006049	Populus Rhizosphere	MAKEITLAQLQKMAERSGLKLSDEELEKLLPGVNRSHHQLLELRELITDSIEPAAVFVTSRTEKR*
Ga0075420_1006180752	3300006853	Populus Rhizosphere	MAKEITLAELQIVAKRSGLQLTDEELAKLLPGVNRSHQQSLELRELITDSIEPAAAFIASRTERQPT*
Ga0075435_1009936222	3300007076	Populus Rhizosphere	MDIGLACFERDNIWTLGENMAKESTLAELRALAKRSGLQLTDAELEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKR*
Ga0075418_105996652	3300009100	Populus Rhizosphere	MAKEITLAELQIVAKRSGLQLTDEELAKLLPGVNRSHQQSLELRELITDSIEPAAAFVASQTEKRQPT*
Ga0066709_1008019301	3300009137	Grasslands Soil	ELQTMAKRSTLQLTDEELEKLLPGVNRSYNHIFELRGLITDRTEPAAVFVASRTEKR*
Ga0114129_106850922	3300009147	Populus Rhizosphere	LIRFEHDNIRAVGRNMAKEITLAELQIVAKRSGLQLTDEELAKLLPGVNRSHHQSLELRKLITDSIEPAAAFVASRTEKRQPT*
Ga0114129_114158262	3300009147	Populus Rhizosphere	MAKEITLAQLQKMAERSGLKLSDEDLEKLLPGVNRSHHQLLELRELITDSIEPAAAFVTSRTE
Ga0105092_100523643	3300009157	Freshwater Sediment	MAEEITLAELRTMASRAGLSLSDRELEKLLPGVNRSHIQALELREFITDSIEPAATFAASRTKKR*
Ga0105092_104844332	3300009157	Freshwater Sediment	MAKEITLAELQTVAKRSGLQLTDEELTKLLPGVNRSHQQSLELRELIIDSIEPAAAFVASRTER*
Ga0075423_102249192	3300009162	Populus Rhizosphere	MAKEITLAQLQKMAERSGLKLSNEDLEKLLPGVNRSHHQLLELRELITDSIEPAAAFVTSRTEKR*
Ga0105340_11225582	3300009610	Soil	LACFERDNIWALGENMAKEITLAELQTMAKRSGLQLTDEDLEKLLPGVNRSYNQILELRGLLTDRTEPATAFVASRTEKR*
Ga0126374_101731442	3300009792	Tropical Forest Soil	MAKEITLAQLQMMAERSGLKLTYEEVEKLLPGVNRSHNQILELRELITDNIEPASAFAASRTAKR*
Ga0126374_102829942	3300009792	Tropical Forest Soil	MSAADNIYVEHGGENMNKEITLAQLQTMVERSGLNLTDEEVEKLLPGVNRSHNQILELRELITDNIEPATAFAASRTKKR*
Ga0105075_10646651	3300009799	Groundwater Sand	LGASTSPSFLANDSKDIVLVCFERDNVWALGENMTKEITLAELQTMAKRSGLQLTAEELERLLPGVNRSHDQILELRELITDRIEPAAAFVASRTEKR*
Ga0105056_10030932	3300009801	Groundwater Sand	WFRKNRISTALLGASTSPSFSANDSKDIVLVCFERDNIWALGENMAKEITLAELQTMAKRSGLQLTAEELERLLPGVNRSHDQILELRELITDRIEPAAAFVASRTEKR*
Ga0105061_10009533	3300009807	Groundwater Sand	LGASTSPSFSANDSKDIVLVCFERNNIWALGENMAKEITLAELQTMAKRSGLQLTAEELERLLPGVNRSHDQILELRELITDRIEPAAAFVASRTEKR*
Ga0105088_10354242	3300009810	Groundwater Sand	MAKKITLVELQTMASRSGLRLSDEELEKLLPGVNRSHDQILELRELITDRIEPAAAFVASRTEKR*
Ga0105070_10081452	3300009815	Groundwater Sand	LGASTSPSFSANDSKDIVLVCFERDNIWALGENMAKEITLAELQTMAKRSGLQLTAEELERLLPGVNRSHDQILELRELITDRIEPAAAFVASRTEKR*
Ga0105076_10009152	3300009816	Groundwater Sand	LGASTSPSFSANDSKDIVLVCFERDNIWALGENMAKEITLAELQTMAKRSGLQLTAEELEKLLPGVNRSHDQTLELRELITDRIEPAAAFVASRTEKR*
Ga0105062_10371762	3300009817	Groundwater Sand	LAELQTMAKRSGLQLTAEELEKLLPGVNRSHDQTLELRELITDRTEPAAAFVASRTEKR*
Ga0105072_10028273	3300009818	Groundwater Sand	SFSANDSKDIVLVCFERDNIWALGENMAKEITLAELQTMAKRSGLQLTAEELERLLPGVNRSHDQILELRELITDRIEPAAAFVASRTEKR*
Ga0105068_10007424	3300009836	Groundwater Sand	LGASTCPSFSANDSKDIVLVCFERNNIWALGENMAKEITLAELQTMAKRSGLQLTAEELERLLPGVNRSHDQILELRELITDRIEPAAAFVASRTEKR*
Ga0126380_105099031	3300010043	Tropical Forest Soil	TLAQLQTMVERSGLNLTDEEVEKLLPGVNRSHNQILELRELITDNIEPATAFAASRTKKR
Ga0126380_106676152	3300010043	Tropical Forest Soil	MVKELTLAQLQMMAERSGLKLTDEEVEKLLPGVNRSHNQILELRELITDSIEPATAFAASRTEKR*
Ga0126384_121161741	3300010046	Tropical Forest Soil	PLGENMAKEITLAELQTVAKRSGLQLTDEELEKLLPGVNRSHHQVLELRELITDSIEPAATFVASQTEKR*
Ga0126384_123648541	3300010046	Tropical Forest Soil	MAKEITLARLQKMVEQSGLKLTDEEVEKLLPGVNRSQNQVLELREVITDSIEPATAFAASRTEK
Ga0126382_100081513	3300010047	Tropical Forest Soil	MVKELTLAQLRMMAERSGLKLTDEEVEKLLPGVNRSHNQILELRKLITDSIEPASAFAASRTEKK*
Ga0126382_106198312	3300010047	Tropical Forest Soil	MAKEITLAQLQKMVERSGLKLTDEEVEKLLPGVNRSQNQVLELRELITDSIEPATAFAASRTEKRLPTDGAH*
Ga0126382_106958582	3300010047	Tropical Forest Soil	CPELFVARATTAGLLGENMAKEITLIELQTMASRSGLSLSGEELEKLLPGVNRSRYQILELRELIVDSTEPAAAFAASGTEKR*
Ga0126382_107619182	3300010047	Tropical Forest Soil	MAKEITLAELQTVAKRSGLQLTDEELEKLLPGVNRFHHHILELRELITDSIEPAAAFAASQTEKR*
Ga0126382_110889472	3300010047	Tropical Forest Soil	MAKEITLAQLQMMAERSGLKLTDEEVEKLLPGVNRSHNQILELRELITDSIEPATAFAASRTEKR*
Ga0126382_119713282	3300010047	Tropical Forest Soil	MSAADNIYVEHGGENMAKEITLAQLQTMVERSGLNLTDEEVEKLLPGVNRSHNQILELRELITDNIEPATAFAASRTKKR*
Ga0126370_105599322	3300010358	Tropical Forest Soil	MAKEITLAQLQTMVERSGLNLTDEEVEKLLPGVNRSHHQILELRELITDNIEPATAFAASRTKKS*
Ga0126370_114032491	3300010358	Tropical Forest Soil	MSAADNIYVEHGGENMNKEITLAQLQTMVERSGLNLTDEEVEKLLPGVNRSHNQILELRELITDNIE
Ga0126377_101496262	3300010362	Tropical Forest Soil	MSAADNIYVEHGGENMNKEITLAQLQTMVERSGLKLTDEEVEKLLPGVNRSHHQILELRELITDNIEPATAFAASRTKKS*
Ga0126377_102029862	3300010362	Tropical Forest Soil	MAKEMTLAQLQTLAERSGLKLTEEEVETLLPGVNRCHNQILELRELITDSVEPASAFAASRTEKR*
Ga0126377_106560502	3300010362	Tropical Forest Soil	MAKEITLAELQTLAKRSGLQLTDEELEKLLPGVNRSHHQVLELRELITDSIEPAATFVASQTEKR*
Ga0126377_106678862	3300010362	Tropical Forest Soil	MVEQSGLKLIEEEVEKLLPGVNRSQNQVLELREVITDSIEPATAFAASRTEKR*
Ga0126377_113021442	3300010362	Tropical Forest Soil	MAKEITLAQLQKMMKRSGLNLTDEEVEKLLPGVNRSQNQILELRELITDSIEPATVFAASRTEKR*
Ga0126377_125242762	3300010362	Tropical Forest Soil	MAKEITLAQLQMMAERSGLKLTDEEVEKLLPGVNRSQNQILELRELITDSIEPATAFAASRNEKR*
Ga0126379_102415622	3300010366	Tropical Forest Soil	MSAADNIYVEHGGENMNKEITLAQLQTMVERSGLKLTDEEVEKLLPGVNRSHNQILELRELITDNIEPATAFAASRTKKR*
Ga0126379_117283142	3300010366	Tropical Forest Soil	MAKEITLAQLQMMAERSGLKLTYEEVEKLLPGVNRSHNQILELRKLIADSIEPASAFAASRPAKR*
Ga0126381_1007738752	3300010376	Tropical Forest Soil	MAKEITLAQLQTMVERSGLKLTDEEVEKLLPGVNRSNHQILELRELITDNIEPATAFAASRTKKS*
Ga0126383_106349181	3300010398	Tropical Forest Soil	QLQTMVERSGLKLTDEEVEKLLPGVNRSHHQILELRELITDNIEPATAFAASRTKKS*
Ga0137344_10718722	3300012159	Soil	LACFERDNIWALGENMAKEITLAELQTMAKRSGLQLTDEDLEKLLPGVNRSYNHIFELRRLITDRTEPAAAFVASRTEKR*
Ga0137382_112146821	3300012200	Vadose Zone Soil	QSPPVDDSKDIGLACFERDNIWALGENMAKEITLAELQTMAKRSGLQLTDEELEKLLPGVNRSYNHIFELRGLITDRTEPAAAFVASRTEKR*
Ga0137379_101746362	3300012209	Vadose Zone Soil	MAKEIMLVELQTMAARSRLQLTDEELEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTENR*
Ga0137372_100049334	3300012350	Vadose Zone Soil	VRTWAVGENMAKEIMLVELQTMAARSRLQLTDEELEKLLPGVNRSYNQILELRGLITDRAEPAAAFVASRTENR*
Ga0137367_104060412	3300012353	Vadose Zone Soil	MDIGLACFERDNIWTLGENMAKESTLAELRAMAKRSGLQLTDEELEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKR*
Ga0157315_10746431	3300012508	Arabidopsis Rhizosphere	RKNKPRISTELLGVGICPSFSQNHSRDIGLAKNMVVSSPTIFRARREHMSKEITLAKLQTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKNK*
Ga0157326_10857472	3300012513	Arabidopsis Rhizosphere	LGVGICPSFSANHSRDIGLAKNMVVSSPTIFRAWREHMSKEITLAKLQTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKNK*
Ga0137397_103378102	3300012685	Vadose Zone Soil	MAKDITLAELQTMADRSGLQLTDEDLEKLLPGVNRSYNHIFELRGLITDRTEPAAAFVASRTEKS*
Ga0137397_103446752	3300012685	Vadose Zone Soil	MDIGLACFERDNIWALGENMAKEITLVELQTMSSRLGLRLSDEELEKLLPGVNRSHHQILELRELITDSIEPAAAFVASR
Ga0137394_100359483	3300012922	Vadose Zone Soil	MDIGLACFERDNIWALGENMAKEITLAELQTMAKRSGLQLTDEDLEKLLPGVNRSYNHIFELRGLITDRTEPAAAFVASRTEKS*
Ga0137394_101358882	3300012922	Vadose Zone Soil	MVVSSPTIFRVWGENMAKDITLAELQTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAVFVASRTEKR*
Ga0137404_115801721	3300012929	Vadose Zone Soil	VDDSKDIGLACFERDNIWALGENMAKEITLAELQTIAERSGLQLTDEDLEKLLPGVNRSYNHIFELRGLITDRTEPAAAFVASRTEKR*
Ga0137407_102821751	3300012930	Vadose Zone Soil	ITLAELQTMAERSGLQLTDEDLEKLLPGVNRSYNHIFELRGLITDRTEPAAVFVASRTEKR*
Ga0137410_106431901	3300012944	Vadose Zone Soil	MAKDLTLAELQTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAVFVASRTEKR*
Ga0137410_112148762	3300012944	Vadose Zone Soil	LGVGTCLSLSANDSTDIGLACFERDNIWALGENMAKEITLAELQTMAKRSGLQLTDEDLEKLLPGVNRSHHQILELRELITDSIEPAAAFVASRTEKR*
Ga0126375_112116501	3300012948	Tropical Forest Soil	MAKEITLAQLHTMVERSGLKLTEEEVEKLLPGVNRSQNQILELRELITDSIEPATAFAASRTEKR*
Ga0126375_120930391	3300012948	Tropical Forest Soil	MAKEITLAQLQTMVERSGLKLTEEEVEKLLPGVNRSHNQILELRELITDSIEPATAFAASRTEKR*
Ga0137409_101164922	3300015245	Vadose Zone Soil	LACLERDNIWRLGENMAKDITLAELQTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAVFVASRTEKR*
Ga0132258_107577802	3300015371	Arabidopsis Rhizosphere	MSKEITLAKLQTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKNK*
Ga0132257_1033102111	3300015373	Arabidopsis Rhizosphere	MPKEITLPELQFMAVRSGIQLTDDELEKLLPGVTRSYHQILELRGLITDRTEPAATFIASRIEKG*
Ga0184608_104099622	3300018028	Groundwater Sediment	MAKEITLVELQTMSSRLGLRLSDEELEKLLPGVNRSHHQILELRELITDSIEPAAAFVASRIEKR
Ga0184638_10355822	3300018052	Groundwater Sediment	MATEITLVELQTMSSRLGLRLSDEELEKLLPGVNRSHHQILELRELITDSIEPAAAFVASRTEKR
Ga0184626_100072334	3300018053	Groundwater Sediment	MAKEITLAELQTMAKRSGLQLTDKDLEKLLPGVNRSYNHIFELRRLITDRTEPAAAFVASRTEKR
Ga0184626_100507022	3300018053	Groundwater Sediment	MAKEITLVELQTISSRLGLRLSDEELEKLLPGVNRSHHQILELRELITDSIEPAAAFVASRTEKR
Ga0184621_100240013	3300018054	Groundwater Sediment	MAKEITLVELQTMSSRLGLRLSDEELEKLLPGVNRSHHQILELRELITDSIEPAAAFV
Ga0187773_101447692	3300018064	Tropical Peatland	MAQGMTLEHLRSMAERSGLRLSDEELEKLLPGVNRSRTQILELRELISDSVEPAAAFVAARNEKGQ
Ga0184635_100145882	3300018072	Groundwater Sediment	MAKEITLAELQTMAKRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKR
Ga0184624_100631822	3300018073	Groundwater Sediment	MAKEITLVELQTISSRLGLRLSDEELEKLLPGVNRSHHQILELRELITDSIEPAAAFVASRIEKR
Ga0184625_102560671	3300018081	Groundwater Sediment	MAKEITLAELQTMAKRSGLQLTDEDLEKLLPGVNRSYNQILELRGLLTDRTEPATAFVASRTEKR
Ga0224452_10307482	3300022534	Groundwater Sediment	MAKEITLVELQTMSSRLGLRLSDEELEKLLPGVNRSHHQILELRELITDSIEPAAAFVASRTEKR
Ga0209875_10028812	3300027209	Groundwater Sand	LVCFERNNIWALGENMAKEITLAELQTMAKRSGLQLTAEELERLLPGVNRSHDQILELRELITDRIEPAAAFVASRTEKR
Ga0209846_10180531	3300027277	Groundwater Sand	MAKKITLVELQTMASRSGLRLSDEELEKLLPGVNRSHDQILELRELITDRIEPAAAFVASRT
Ga0209842_100008011	3300027379	Groundwater Sand	LVCFERNNIWALGENMAKEITLAELQTMAKRSGLQLTAEELEKLLPGVNRSHDQILELRELITDRIEPAAAFVASRTEKR
Ga0209899_10123841	3300027490	Groundwater Sand	LLGASTSPSFSANDSKDIVLVCFERDNIWALGENMAKEITLAELQTMAKRSGLQLTAEELERLLPGVNRSHDQILELRELITDRIEPAAAFVASRTEKR
Ga0209887_100001919	3300027561	Groundwater Sand	MAKKITLVELQTMASRSGLRLSDEELEKLLPGVNRSHDQILELRELITDRIEPAAAFVASRTEKR
Ga0209819_102664161	3300027722	Freshwater Sediment	MAEEITLAELRTMASRAGLSLSDRELEKLLPGVNRSHIQALELREFITDSIEPAATFAASRTKKR
Ga0209382_110378632	3300027909	Populus Rhizosphere	MAKEITLAELQIVAKRSGLQLTDEELAKLLPGVNRSHQQSLELRELITDSIEP
Ga0210366_100489161	3300028420	Estuarine	MATELVLDDLRRLASRAGLSLSDNELQKLLPGVNRSHRQISELRELLSDEIEPAAHFSPATGK
Ga0307469_105244182	3300031720	Hardwood Forest Soil	MAKEITLAELQIVAKRSGLQLTDEELAKLLPGVNRSHQQSLELREFIIDSIEPAAAFVASRTER
Ga0307468_1014966082	3300031740	Hardwood Forest Soil	MAKEITLAELQIVAKRSGLQLTDEELAKLLPGVNRSHHQSLELRELITDSIEPAAAFVASRTEKR
Ga0307473_108365292	3300031820	Hardwood Forest Soil	ELQTVADRSGLQLTDEDLEKLLTGVNRSYNQILELRGLITDRTEPAAVFVASRTEKR
Ga0310892_102374372	3300031858	Soil	NRPRISTELLGVGICPSFSANHSRDIGLAKNMVVSSPTIFRAWREHMSKEITLAKLRTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKNK
Ga0310906_102952241	3300032013	Soil	MSKEITLAKLRTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKNR
Ga0310890_100738262	3300032075	Soil	MSKEITLAKLQTMADRSGLQLTDEDLEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKNR
Ga0307471_1011041582	3300032180	Hardwood Forest Soil	MAKEITLAELQIVAKRSGLQLTDEELAKLLPGVNRSHHQSLELRELITDSIEPAAAFIASRTERQPT
Ga0326726_100588112	3300033433	Peat Soil	VAKEITLVELQTMAARSGLQLSDEELEKLLPGVNRSYNQILELRGLITDRTEPAAAFVASRTEKR
Ga0364945_0043809_906_1148	3300034115	Sediment	LACFERDNIWALGENMAKEITLAELQTMAKRSGLQLTDEDLEKLLPGVNRSYNQILELRGLLTDRTEPATAFVASRTEKR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067218

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign