Metagenome / Metatranscriptome Family F067000

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067000
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	43 residues
Representative Sequence	MLRSLLVLCLVCITAPTLAQEYQSKELADAARDWRQELIDSVPAN
Number of Associated Samples	98
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.44 %
% of genes near scaffold ends (potentially truncated)	98.41 %
% of genes from short scaffolds (< 2000 bps)	91.27 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.397 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (56.349 % of family members)
Environment Ontology (ENVO)	Unclassified (61.905 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (55.556 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 53.42% β-sheet: 0.00% Coil/Unstructured: 46.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF03446	NAD_binding_2	24.60
PF14833	NAD_binding_11	15.08
PF11251	DUF3050	7.14
PF03466	LysR_substrate	4.76
PF12840	HTH_20	3.97
PF01934	HepT-like	3.17
PF01548	DEDD_Tnp_IS110	2.38
PF09130	DUF1932	2.38
PF01925	TauE	1.59
PF13847	Methyltransf_31	1.59
PF04586	Peptidase_S78	1.59
PF03916	NrfD	0.79
PF00805	Pentapeptide	0.79
PF07883	Cupin_2	0.79
PF01400	Astacin	0.79
PF03061	4HBT	0.79
PF02371	Transposase_20	0.79
PF00498	FHA	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG2361	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	3.17
COG2445	Uncharacterized HEPN domain protein YutE, UPF0331/DUF86 family	General function prediction only [R]	3.17
COG3547	Transposase	Mobilome: prophages, transposons [X]	3.17
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	2.38
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	1.59
COG3740	Phage head maturation protease	Mobilome: prophages, transposons [X]	1.59
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.40 %
Unclassified	root	N/A	24.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.40 %
Unclassified	root	N/A	24.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.40 %
Unclassified	root	N/A	24.60 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	61.90 %
Unclassified	root	N/A	24.60 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	3.17 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.06 %
Unclassified	root	N/A	24.60 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.17 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.17 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	26.19 %
Unclassified	root	N/A	24.60 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.76 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	3.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.17 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.59 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.19 %
Unclassified	root	N/A	24.60 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	3.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.17 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.59 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.59 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.19 %
Unclassified	root	N/A	24.60 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	3.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.17 %
Methyloferula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula	1.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.59 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.19 %
Unclassified	root	N/A	24.60 %
Pseudomonas aeruginosa group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group	3.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.17 %
Methyloferula stellata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	1.59 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.79 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.79 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.19 %
Unclassified	root	N/A	24.60 %
Pseudomonas aeruginosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	3.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.17 %
Methyloferula stellata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	1.59 %
Bradyrhizobium sp. Ai1a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	0.79 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.79 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10473723	Not Available	505	Open in IMG/M
3300005167\|Ga0066672_10967647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300005184\|Ga0066671_10612490	Not Available	707	Open in IMG/M
3300005518\|Ga0070699_100689984	Not Available	933	Open in IMG/M
3300005610\|Ga0070763_10072848	All Organisms → cellular organisms → Bacteria	1683	Open in IMG/M
3300006175\|Ga0070712_100064181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2603	Open in IMG/M
3300006796\|Ga0066665_10797020	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300007258\|Ga0099793_10098384	All Organisms → cellular organisms → Bacteria → Proteobacteria	1351	Open in IMG/M
3300009143\|Ga0099792_10558956	Not Available	724	Open in IMG/M
3300010046\|Ga0126384_11098743	Not Available	729	Open in IMG/M
3300010361\|Ga0126378_10172451	All Organisms → cellular organisms → Bacteria → Proteobacteria	2223	Open in IMG/M
3300010376\|Ga0126381_101895927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300010376\|Ga0126381_104509063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300010398\|Ga0126383_13023620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300011270\|Ga0137391_10229621	Not Available	1611	Open in IMG/M
3300012362\|Ga0137361_10809566	Not Available	852	Open in IMG/M
3300012362\|Ga0137361_11318946	Not Available	646	Open in IMG/M
3300012363\|Ga0137390_11383282	All Organisms → cellular organisms → Bacteria → Proteobacteria	648	Open in IMG/M
3300012363\|Ga0137390_11591995	Not Available	591	Open in IMG/M
3300012685\|Ga0137397_10291158	All Organisms → cellular organisms → Bacteria → Proteobacteria	1217	Open in IMG/M
3300012917\|Ga0137395_10347932	All Organisms → cellular organisms → Bacteria → Proteobacteria	1056	Open in IMG/M
3300012923\|Ga0137359_11424711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300012971\|Ga0126369_11792180	All Organisms → cellular organisms → Bacteria → Proteobacteria	703	Open in IMG/M
3300016294\|Ga0182041_11497887	Not Available	621	Open in IMG/M
3300016319\|Ga0182033_10408102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1150	Open in IMG/M
3300016319\|Ga0182033_11737697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	565	Open in IMG/M
3300016371\|Ga0182034_11328111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300016404\|Ga0182037_10230216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1455	Open in IMG/M
3300016404\|Ga0182037_11767495	Not Available	552	Open in IMG/M
3300016422\|Ga0182039_11000191	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300018433\|Ga0066667_10409636	All Organisms → cellular organisms → Bacteria → Proteobacteria	1098	Open in IMG/M
3300020579\|Ga0210407_10517745	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300021170\|Ga0210400_11633123	Not Available	508	Open in IMG/M
3300021362\|Ga0213882_10176283	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300021478\|Ga0210402_10518041	All Organisms → cellular organisms → Bacteria → Proteobacteria	1107	Open in IMG/M
3300021560\|Ga0126371_10291670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1756	Open in IMG/M
3300021560\|Ga0126371_10292736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	1753	Open in IMG/M
3300021560\|Ga0126371_10644614	All Organisms → cellular organisms → Bacteria → Proteobacteria	1208	Open in IMG/M
3300021560\|Ga0126371_12739566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300025915\|Ga0207693_10160848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1766	Open in IMG/M
3300025929\|Ga0207664_11495270	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300026312\|Ga0209153_1247137	Not Available	577	Open in IMG/M
3300026489\|Ga0257160_1026144	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300026547\|Ga0209156_10131106	All Organisms → cellular organisms → Bacteria → Proteobacteria	1223	Open in IMG/M
3300027297\|Ga0208241_1036318	Not Available	767	Open in IMG/M
3300027603\|Ga0209331_1081049	Not Available	804	Open in IMG/M
3300027603\|Ga0209331_1084509	Not Available	784	Open in IMG/M
3300027783\|Ga0209448_10136904	Not Available	819	Open in IMG/M
3300027874\|Ga0209465_10413481	Not Available	675	Open in IMG/M
3300028047\|Ga0209526_10469819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	825	Open in IMG/M
3300029636\|Ga0222749_10185371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1032	Open in IMG/M
3300031446\|Ga0170820_12253478	Not Available	626	Open in IMG/M
3300031543\|Ga0318516_10073540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1899	Open in IMG/M
3300031545\|Ga0318541_10036712	All Organisms → cellular organisms → Bacteria → Proteobacteria	2463	Open in IMG/M
3300031545\|Ga0318541_10290741	Not Available	910	Open in IMG/M
3300031545\|Ga0318541_10490798	All Organisms → cellular organisms → Bacteria → Proteobacteria	687	Open in IMG/M
3300031561\|Ga0318528_10152269	All Organisms → cellular organisms → Bacteria → Proteobacteria	1232	Open in IMG/M
3300031564\|Ga0318573_10174311	Not Available	1134	Open in IMG/M
3300031564\|Ga0318573_10244739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	955	Open in IMG/M
3300031564\|Ga0318573_10307429	All Organisms → cellular organisms → Bacteria → Proteobacteria	849	Open in IMG/M
3300031572\|Ga0318515_10247027	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	957	Open in IMG/M
3300031668\|Ga0318542_10149064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1161	Open in IMG/M
3300031668\|Ga0318542_10412154	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300031679\|Ga0318561_10199955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1084	Open in IMG/M
3300031679\|Ga0318561_10648039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300031682\|Ga0318560_10086084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1608	Open in IMG/M
3300031719\|Ga0306917_10849373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	715	Open in IMG/M
3300031724\|Ga0318500_10528928	Not Available	594	Open in IMG/M
3300031736\|Ga0318501_10178074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1105	Open in IMG/M
3300031736\|Ga0318501_10387693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	754	Open in IMG/M
3300031736\|Ga0318501_10844420	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300031763\|Ga0318537_10111969	Not Available	1012	Open in IMG/M
3300031768\|Ga0318509_10446362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	723	Open in IMG/M
3300031770\|Ga0318521_10570237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	683	Open in IMG/M
3300031771\|Ga0318546_10294990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1121	Open in IMG/M
3300031777\|Ga0318543_10100738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1241	Open in IMG/M
3300031778\|Ga0318498_10377695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	631	Open in IMG/M
3300031779\|Ga0318566_10298656	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	797	Open in IMG/M
3300031781\|Ga0318547_11020751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300031793\|Ga0318548_10360663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	713	Open in IMG/M
3300031795\|Ga0318557_10321959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	710	Open in IMG/M
3300031795\|Ga0318557_10380410	All Organisms → cellular organisms → Bacteria → Proteobacteria	649	Open in IMG/M
3300031796\|Ga0318576_10133792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1150	Open in IMG/M
3300031797\|Ga0318550_10449249	Not Available	623	Open in IMG/M
3300031798\|Ga0318523_10026515	All Organisms → cellular organisms → Bacteria	2586	Open in IMG/M
3300031798\|Ga0318523_10282590	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	828	Open in IMG/M
3300031799\|Ga0318565_10189140	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1001	Open in IMG/M
3300031805\|Ga0318497_10344680	Not Available	832	Open in IMG/M
3300031805\|Ga0318497_10610212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300031819\|Ga0318568_10512860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	748	Open in IMG/M
3300031820\|Ga0307473_11369792	Not Available	532	Open in IMG/M
3300031833\|Ga0310917_10324985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1042	Open in IMG/M
3300031835\|Ga0318517_10255023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	792	Open in IMG/M
3300031860\|Ga0318495_10269108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	761	Open in IMG/M
3300031879\|Ga0306919_11532318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300031890\|Ga0306925_10885391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	919	Open in IMG/M
3300031897\|Ga0318520_10719238	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300031897\|Ga0318520_10776421	All Organisms → cellular organisms → Bacteria → Proteobacteria	601	Open in IMG/M
3300031912\|Ga0306921_10027777	Not Available	6280	Open in IMG/M
3300031941\|Ga0310912_10019300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4487	Open in IMG/M
3300031941\|Ga0310912_10232806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1414	Open in IMG/M
3300031942\|Ga0310916_10049290	All Organisms → cellular organisms → Bacteria → Proteobacteria	3211	Open in IMG/M
3300031942\|Ga0310916_11268719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300031946\|Ga0310910_10507481	All Organisms → cellular organisms → Bacteria → Proteobacteria	957	Open in IMG/M
3300031946\|Ga0310910_10596014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	876	Open in IMG/M
3300031947\|Ga0310909_10062522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2899	Open in IMG/M
3300031947\|Ga0310909_10119006	All Organisms → cellular organisms → Bacteria	2142	Open in IMG/M
3300031959\|Ga0318530_10442733	Not Available	539	Open in IMG/M
3300031981\|Ga0318531_10023515	All Organisms → cellular organisms → Bacteria	2481	Open in IMG/M
3300032009\|Ga0318563_10744741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300032039\|Ga0318559_10066913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1539	Open in IMG/M
3300032041\|Ga0318549_10092057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1313	Open in IMG/M
3300032042\|Ga0318545_10024867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1929	Open in IMG/M
3300032043\|Ga0318556_10156082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1179	Open in IMG/M
3300032043\|Ga0318556_10421194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	698	Open in IMG/M
3300032043\|Ga0318556_10455384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300032054\|Ga0318570_10410546	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300032055\|Ga0318575_10087864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1490	Open in IMG/M
3300032055\|Ga0318575_10451066	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300032064\|Ga0318510_10111689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1050	Open in IMG/M
3300032065\|Ga0318513_10079697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1510	Open in IMG/M
3300032174\|Ga0307470_10205467	All Organisms → cellular organisms → Bacteria → Proteobacteria	1263	Open in IMG/M
3300032205\|Ga0307472_101444614	Not Available	669	Open in IMG/M
3300032261\|Ga0306920_102526032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	706	Open in IMG/M
3300033289\|Ga0310914_10012941	Not Available	6264	Open in IMG/M
3300033290\|Ga0318519_10608573	Not Available	664	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.21%
Aquatic	Environmental → Aquatic	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.41%
Freshwater	Environmental → Aquatic → Freshwater	0.79%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.68%
Loam	Environmental → Terrestrial → Soil → Loam	8.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.79%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	69.05%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.79%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	56.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.38%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.79%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_104737231	3300003505	Forest Soil	MLRALLVFCLVFAAAPAMAQEYQSKDLSDAARDWRRELIDG
Ga0066672_109676471	3300005167	Soil	MLRSLLVLCLVCIAAPAMAQEYKSKELADAARDWRQELIDGIPANKKQPNL
Ga0066671_106124901	3300005184	Soil	MLRAFLVLFLVSVAASALGQEYQSKELAQAASDWRRELIE
Ga0070699_1006899841	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MLRSLLVLCLVCIAAPAMAQEYKSKELADAARDWRQELID
Ga0070763_100728481	3300005610	Soil	MLRALLVLCLVSVAAPALGQEYQSKELAQAASDWRRELIERIPA
Ga0070712_1000641815	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLRALLLFCLVSAAAPAVAQEYQSKELADAARDWRRELIDSVPANKKQ
Ga0066665_107970201	3300006796	Soil	MLRALLVLCLVSIAAPGLAQEYQSKELADAAGGWRRELI
Ga0099793_100983842	3300007258	Vadose Zone Soil	MLRSLLVLWLVCIAAPTLAQEYTSRDLADAARDWRREVIDGIPANKKQ
Ga0099792_105589563	3300009143	Vadose Zone Soil	MLRGLLVFCLVCVAGPALAQEYQSKELADAARDWRQELI
Ga0126384_110987432	3300010046	Tropical Forest Soil	MLRTLLFLVVFAAAPAAAQEYQSKELADAAHEWRQELIDTVPANKKQP
Ga0126378_101724512	3300010361	Tropical Forest Soil	MLRALLLLLVFAAAPVVAQEYQSKELADAARDWRRELIDSIPANKK
Ga0126381_1018959272	3300010376	Tropical Forest Soil	MLRSLLVLCLVFAAPALAQEYQSKELADAARDWRQELIDSVPANKKQP
Ga0126381_1045090631	3300010376	Tropical Forest Soil	MLRSLLVLCLVFASPALAQEYQSKELADAARDWRQELIDS
Ga0126383_130236201	3300010398	Tropical Forest Soil	MLRSLLLLCLVCVATPVRGQEYQSKELADAAREWRQQLITSVPANKK
Ga0137391_102296214	3300011270	Vadose Zone Soil	MLRALLVFCLVCVAGPALAQEYQSKELADAARDWRQQLIDSVPANK
Ga0137361_108095662	3300012362	Vadose Zone Soil	VLRALLVFCLVCVAGPALAQEYQSKELADAARAWRQELIDSIPANKKQPG
Ga0137361_113189462	3300012362	Vadose Zone Soil	MLRALLVFCLVCVAAPAPAQEYQSKELADAARDWRQQLIDSIP
Ga0137390_113832822	3300012363	Vadose Zone Soil	MLRGLLVFCLVCVAAPALAQEYQSKELADAARNQQQDLS
Ga0137390_115919951	3300012363	Vadose Zone Soil	MLRSLLVFCLVWVTVPALAQEYQSKELADAARDWRQELI
Ga0137397_102911582	3300012685	Vadose Zone Soil	MLRSLLVLCLVCIAAPTLAQEYTSRDLADAARDWRRELIDGIPA
Ga0137395_103479322	3300012917	Vadose Zone Soil	MLRALLVLCLVSAAAPAVGQEYQSKELADAARDWRRELINSVPA
Ga0137359_114247111	3300012923	Vadose Zone Soil	MLRLLLVLCLVCVAAPAMAQEYTSKELADAARDWRRELIDGIPANRKQ
Ga0126369_117921801	3300012971	Tropical Forest Soil	MLRSLLVLCLVCVAAPTLAQEYRSQDLADAARGWRQELIDGIPA
Ga0182041_114978872	3300016294	Soil	MLRSLLVLCLITVASPALAQDYQSKELADAARDWRQQLIDSIPA
Ga0182033_104081022	3300016319	Soil	MLRSLFVFCLVCFTASALAQEYQSKELADAARDWRQELIDSIPAN
Ga0182033_117376971	3300016319	Soil	MLRLLMVFCLVCFSAPTLAQEYQSKELADAALDWRQE
Ga0182034_113281111	3300016371	Soil	MLRALLLLVFAAAPAAAQDYQSKELADAAREWRQELINSIPANKKQPNL
Ga0182037_102302161	3300016404	Soil	MLRLLLVFCLVCFTAPALAQEYQSKELAEAARDWRQEL
Ga0182037_117674951	3300016404	Soil	MLRSLLVFCLVCVGAPALAQEYQPRELADAARVWRQELIDSI
Ga0182039_110001912	3300016422	Soil	MLRALLLLFVFAAAPAAAQEYQSKELADAARDWRQELIDSVPAN
Ga0066667_104096361	3300018433	Grasslands Soil	MLRASLVFCLVSIAAPALAQEYQSKELADAARDWRREL
Ga0210407_105177451	3300020579	Soil	MLRALLLFVVLAVAPAAAQEYQSKELADAARDWRQELIGSVPA
Ga0210400_116331232	3300021170	Soil	MLRALLVLCLVSTATPALAQEYQSKELTDAAADWRRELI
Ga0213882_101762831	3300021362	Exposed Rock	MLRALLVLCLVSLAAPALGQEFQPKNLADAAKDWRRELIERIPANKRQPA
Ga0210402_105180412	3300021478	Soil	MLRSLLVFCLLWVTVPALAQEYQSKELADAARDWRQELIDGIPANKKQP
Ga0126371_102916703	3300021560	Tropical Forest Soil	MLRTLLVVCLVGIVSPVLAQEYQSKELADAARDWRRQLIDSIRANK
Ga0126371_102927361	3300021560	Tropical Forest Soil	MLRALLLLAVFAALPAVAQEYQSKELADAARDWRRELIDSVPANR
Ga0126371_106446142	3300021560	Tropical Forest Soil	MLRSLLVLCLVFTSPALAQEYQSKELADAARDWRQEL
Ga0126371_127395662	3300021560	Tropical Forest Soil	MLRSLLVLCLVFASPALAQEYQSKELADAARDWRQELID
Ga0207693_101608483	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MLRALLVFCLVSVAAPALAQEYQSKELADAARDWRRELIDSVPANKKQPALI
Ga0207664_114952701	3300025929	Agricultural Soil	MLRALLVLCLVSLAAPALGQEYQSKDLAEAANNWRRE
Ga0209153_12471372	3300026312	Soil	LRAFLVLFLVSVAASALGQEYQSKELAQAASDWRRELIE
Ga0257160_10261441	3300026489	Soil	MLRALLVLCLVSTAAPGMAQEYQSKELADAARDWRRELIDSVPANKKQPALIA
Ga0209156_101311061	3300026547	Soil	MLRALLVFCLVSMAAPALAQEYQSKELADAARDWRRGLIDSI
Ga0208241_10363181	3300027297	Forest Soil	MLRALLVLCLVSTAAPAVAQEYQSKDLSDAARDWRRE
Ga0209331_10810491	3300027603	Forest Soil	MLRALLVLCLVSTAAPGMAQEYQSKELADAARDWRRELIDSV
Ga0209331_10845092	3300027603	Forest Soil	MLRSLLVLCLVCIAAPAMAQEYKSKELADAARDWRQEL
Ga0209448_101369041	3300027783	Bog Forest Soil	MLRALLVLCLVSVAAAAVAQEYQSKELSDAARDWRRELIDSVPANKK
Ga0209465_104134811	3300027874	Tropical Forest Soil	MLRSLLVLCLVFASPALAQEYQSKELADAARDWRQELIDSVPAH
Ga0209526_104698191	3300028047	Forest Soil	MLRALLVFCLVSVAAPAMAQEYQSKELADAARDWRRELIDSVPANKKQ
Ga0222749_101853711	3300029636	Soil	MLRALLVLCLVSTAAPAVTQEYQSKDLSDAARDWRRELIDSVPA
Ga0170820_122534782	3300031446	Forest Soil	MLRALLVLCLVSIGAPGLAQEYKSKELADAASGWRRELID
Ga0318516_100735402	3300031543	Soil	MLRSLLLVFVFAAAPALAQEYRSKELADAARDWRQELIDSLPANKKQPSV
Ga0318541_100367126	3300031545	Soil	MLRALLLLFVFVAAPAAAQEYQSKELADAARDWRQELIDSVPANKKQ
Ga0318541_102907413	3300031545	Soil	MLRALLLLFVFAAAPAAAQEYQSKELADAARDWRQEL
Ga0318541_104907982	3300031545	Soil	MLRPLLVFCLVCVASPALAQDYQSRELADAARDWRQQLID
Ga0318528_101522692	3300031561	Soil	MLRALLLLVFAAAPAAAQDYQSKELADAAREWRQELINGTAR
Ga0318573_101743112	3300031564	Soil	MLRLLMVFCLVCVTAPTLAQEYQSKELADAALDWRQELIDSVPAN
Ga0318573_102447391	3300031564	Soil	MLRLPSVFCLICFTVSALAQEYQSKELADAARDWRQELIDSVPANKK
Ga0318573_103074291	3300031564	Soil	MLRALLLVLVFAATPAAAQEYQSKELADAARDWRRELIDS
Ga0318515_102470271	3300031572	Soil	MLRLLMVFCLVCFSAPTLAQEYQSKELADAARDWWQELIDSVPANKKQPN
Ga0318542_101490642	3300031668	Soil	MLRLPSVFCLICFTVSALAQEYQSKELADAARDWRQELIDSVP
Ga0318542_104121542	3300031668	Soil	MLRALLVLCLVSTAAPGLTQEYQSKELAAAASSLD
Ga0318561_101999551	3300031679	Soil	MLRALLVLCLVSTAAPGLTQEYQSKELAAAASDWRRELGDRIP
Ga0318561_106480391	3300031679	Soil	MLRSLFVICLVCVASPALAQEYQSKELADAARDWRRELIDSVPANKKQPS
Ga0318560_100860841	3300031682	Soil	MLRLLLVFCLVCFTAPALAQEYQSKELAEAARDWRQELIDIV
Ga0306917_108493731	3300031719	Soil	LRALLLLFVFVAAPAAAQEYQSKELADAARDWRQELI
Ga0318500_105289281	3300031724	Soil	LRALLLLFVFVAAPAAAQEYQSKELADAARDWRQELID
Ga0318501_101780742	3300031736	Soil	MLRSLLLVFVFAAAPALAQEYRSKELADAARDWRQELIDS
Ga0318501_103876931	3300031736	Soil	MLRALLLLVFAAAPAAAQDYQSKELADAAREWRQELINSIPANKKK
Ga0318501_108444201	3300031736	Soil	MLRALLVLCLVSTAAPGLTQEYQSKELAAAASDWRRELGDRL
Ga0318537_101119692	3300031763	Soil	MLRSLLVLCLVCIASPALAQEYQSKELADTARDWRQQLIDSVPANKKQPG
Ga0318509_104463621	3300031768	Soil	LRLLSVFLLVCVAVPALAQEYQSKELADAAREWRQQ
Ga0318521_105702372	3300031770	Soil	MLRSLLLVFVFAAAPALAQEYRSKEPADAARDWRQELIDSLPANKKQAS
Ga0318546_102949903	3300031771	Soil	MLRALLLLFVFAAAPAAAQEYQSKELADAARDWRQE
Ga0318543_101007382	3300031777	Soil	MLRLLMVFCLVCVTAPTLAQEYQSKELADAALDWRQELIDSVPANKKRPNLS
Ga0318498_103776952	3300031778	Soil	MLRLPSVFCLICFTVSALAQEYQSKELADAARDWRQELIDSVPAN
Ga0318566_102986562	3300031779	Soil	MLRLLMVFCLVCVTAPTLAQEYQSKELADAALDWRQELID
Ga0318547_110207511	3300031781	Soil	MLRLLMVFCLVCVTAPTLAQEYQSKELADAALDWRQ
Ga0318548_103606631	3300031793	Soil	MLRSLFVFCLVCFTASALAQEYQSKELADAALDWRQELIDSVPANKKQ
Ga0318557_103219591	3300031795	Soil	LRSLLVLCLVCITAPTLAQEYQSKELADAARDWRQELIDSVPANKKQAN
Ga0318557_103804101	3300031795	Soil	MLRALLLLFVFAAAPAAAQEYQSKELADAARDWRQELIDSVPANKKQP
Ga0318576_101337922	3300031796	Soil	MLRALLVLCLVSTAAPGLTQEYQSKELAAAASSLDWYS
Ga0318550_104492491	3300031797	Soil	MLRSLFVFCLVCFTASALAQEYQSKELADAALDWR
Ga0318523_100265155	3300031798	Soil	MLRLLMVFCLVCVTAPTLAQEYQSKELADAARDWRQELIDSVPANKKQPN
Ga0318523_102825901	3300031798	Soil	MLRLLMVFCLVCFSAPTLAQEYQSKELADAALDWRQELIDS
Ga0318565_101891402	3300031799	Soil	MLRLLMVFCLVCFSAPTLAQEYQSKELADAALDWRQELIDSVPANKKQP
Ga0318497_103446802	3300031805	Soil	MLRPLLVFCLVCVASPALAQDYQSRELADAARDWRQQLIDSIP
Ga0318497_106102122	3300031805	Soil	MLRSLLVLCLVCAASALAQEYQSKELADPARDWRQELINGVPANKKQP
Ga0318568_105128602	3300031819	Soil	MLRSLFVICLVCVASPALAQEYQSKELADAARDWRRELIDSVPANKKQPSL
Ga0307473_113697922	3300031820	Hardwood Forest Soil	MLRSLLVLCLVCIAAPAMAQEYKSKELADAARDWR
Ga0310917_103249851	3300031833	Soil	LRSLLVLCLVCITAPTLAQEYQSKELADAARDWRQELIDSVP
Ga0318517_102550231	3300031835	Soil	MLRSLLLVFVFAAAPALAQEYRSKELADAARDWRQELIDSLPANKKQASVVAA
Ga0318495_102691082	3300031860	Soil	MLRALLVVCLICASAPVPAQEYQSKELADAARDWRRELIDSIPANKK
Ga0306919_115323181	3300031879	Soil	MLRLLMVFCLVCFSAPTLAQEYQSKELADAALDWRQELI
Ga0306925_108853911	3300031890	Soil	MLRSLLVLCLVFASPALAQEYQSKELADAARDWRQELIDSVPA
Ga0318520_107192381	3300031897	Soil	MLRALLVLCLVSVVSPALAQEYRSKELADAARDWRQELIDSVPANKKQPAQIAG
Ga0318520_107764212	3300031897	Soil	MLRSLLVLCLVCIASPALAQEYQSKELADTARDWRQQLIDSVPANKKQ
Ga0306921_1002777710	3300031912	Soil	MLRSLLVLCLVCITAPTLAQEYQSKELADAARDWRQELIDSVPAN
Ga0310912_100193001	3300031941	Soil	MLRSLLVLCLVCITAPTLAQEYQSKELADAARDWR
Ga0310912_102328061	3300031941	Soil	MLRSLLVLCLVCITAPTLAQEYQSKELADAARDWRQELIDSVPTN
Ga0310916_100492901	3300031942	Soil	MLRSLFVICLVCFTAPALGQEYQSKELADAARDWRQELIDSIPANKK
Ga0310916_112687191	3300031942	Soil	LRLLSVFLLVCVAVPALAQEYQSKELADAAREWRQQLID
Ga0310910_105074811	3300031946	Soil	MLRSLLVLCLITVASPALAQDYQSKELADAARDWRQQLIDSIP
Ga0310910_105960141	3300031946	Soil	MLRALLVLCLVSTAAPGLTQEYQSKELAAAASDWRREL
Ga0310909_100625221	3300031947	Soil	MLRSLFVICLVCFTAPALGQEYQSKELADAARDWRQELIDSVPATKKQP
Ga0310909_101190061	3300031947	Soil	MLRLLMVFCLVCFSAPTLAQEYQSKELADAALDWRQELIDSVPANK
Ga0318530_104427332	3300031959	Soil	MLRALLLLFVFAGAPALAQEYQSKELADTARDWRQE
Ga0318531_100235155	3300031981	Soil	MLRLLMVFCLVCVTAPTLAQEYQSKELADAARDWRQELIDSVPANKKQ
Ga0318563_107447411	3300032009	Soil	LRSLLVLCLVCITAPTLAQEYQSKELADAARDWRQELIDSVPANKKQANLIAG
Ga0318559_100669133	3300032039	Soil	MLRLLMVFCLVCVTAPTLAQEYQSKELADAARDWWQ
Ga0318549_100920573	3300032041	Soil	MLRSLLVLCLVCIASPALAQEYQSKELADTARDWRQQLIDSVPA
Ga0318545_100248671	3300032042	Soil	MLRLPSVFCLICFTVSALAQEYQSKELADAARDWRQELIDSVPANKKQL
Ga0318556_101560821	3300032043	Soil	MLRSLLLVFVFAAAPALAQEYRSKEPADAARDWRQE
Ga0318556_104211942	3300032043	Soil	MLRALLVVCLICASAPVPAQEYQSKELADAARDWRRELIDSIPANKKQPGVVTG
Ga0318556_104553841	3300032043	Soil	MLRSLFVICLVCFTAPALGQEYQSKELADAAKDWRQEL
Ga0318570_104105461	3300032054	Soil	MLRALLVLCLVSTAAPGLTQEYQSKELAEAASDWRRELGDRIPANKRQP
Ga0318575_100878642	3300032055	Soil	MLRSLFVICLVCFTAPALGQEYQSKELADAAREWRQ
Ga0318575_104510661	3300032055	Soil	MLRALLVLCLVSTAAPGLTQEYQSKELAAAASSLDWY
Ga0318510_101116891	3300032064	Soil	LRSLLVLCLVCITAPTLAQEYQSKELADAARDWRQELID
Ga0318513_100796971	3300032065	Soil	MLRSLLVLCLVCIASPALAQEYQSKELADTARDWRQQ
Ga0307470_102054671	3300032174	Hardwood Forest Soil	MLRALLVFCLVSVAAPALAQEYQSKELADAARDWRRELIDSVPAIK
Ga0307472_1014446142	3300032205	Hardwood Forest Soil	MLRSLVVLYLICVAAPAVAQGYTSKELADAARDWRQEQIAGVPANKKQPNLAA
Ga0306920_1025260322	3300032261	Soil	MLRLLLVCCLVCVTAPTLAQEYQSKELADAARDWRQELIDSVPA
Ga0310914_100129411	3300033289	Soil	MLRSLLVLCLVCITAPTLAQEYQSKELADAARDWRQELI
Ga0318519_106085732	3300033290	Soil	MLRALLVFCLVCVAAPSLAQEYQSKELSDAARDWRRELVESVPVNRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067000

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences