Metagenome / Metatranscriptome Family F066983

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066983
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	45 residues
Representative Sequence	AEAGEHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGVHHG
Number of Associated Samples	97
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.41 %
% of genes from short scaffolds (< 2000 bps)	88.89 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.540 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (45.238 % of family members)
Environment Ontology (ENVO)	Unclassified (48.413 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.99% β-sheet: 0.00% Coil/Unstructured: 71.01%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF01227	GTP_cyclohydroI	8.73
PF13483	Lactamase_B_3	7.14
PF00561	Abhydrolase_1	5.56
PF01546	Peptidase_M20	3.97
PF00496	SBP_bac_5	2.38
PF01541	GIY-YIG	0.79
PF13701	DDE_Tnp_1_4	0.79
PF14667	Polysacc_synt_C	0.79
PF04379	DUF525	0.79
PF13469	Sulfotransfer_3	0.79
PF01220	DHquinase_II	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG0757	3-dehydroquinate dehydratase	Amino acid transport and metabolism [E]	0.79
COG2967	Uncharacterized conserved protein ApaG affecting Mg2+/Co2+ transport	Inorganic ion transport and metabolism [P]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.54 %
Unclassified	root	N/A	17.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.54 %
Unclassified	root	N/A	17.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.54 %
Unclassified	root	N/A	17.46 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.94 %
Unclassified	root	N/A	17.46 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	7.14 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	50.00 %
Unclassified	root	N/A	17.46 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	7.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.46 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	14.29 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	7.14 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.29 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	7.14 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	2.38 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.29 %
Fortieaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae	7.14 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1.59 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.79 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.29 %
Roholtiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella	7.14 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1.59 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.79 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.29 %
unclassified Roholtiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella → unclassified Roholtiella	7.14 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1.59 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.79 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.29 %
aff. Roholtiella sp. LEGE 12411	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella → unclassified Roholtiella → aff. Roholtiella sp. LEGE 12411	7.14 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1.59 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.79 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459018\|G1P06HT01AS6RN	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	591	Open in IMG/M
3300004080\|Ga0062385_10535413	Not Available	729	Open in IMG/M
3300004080\|Ga0062385_10724730	Not Available	643	Open in IMG/M
3300004082\|Ga0062384_100201228	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300004091\|Ga0062387_101793598	Not Available	501	Open in IMG/M
3300004635\|Ga0062388_100477613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1109	Open in IMG/M
3300005332\|Ga0066388_102430232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	951	Open in IMG/M
3300005332\|Ga0066388_107493378	Not Available	548	Open in IMG/M
3300005363\|Ga0008090_15662297	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300005561\|Ga0066699_10580517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	805	Open in IMG/M
3300005764\|Ga0066903_100459248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2134	Open in IMG/M
3300005764\|Ga0066903_104610337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	734	Open in IMG/M
3300005898\|Ga0075276_10028486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1166	Open in IMG/M
3300006175\|Ga0070712_100807415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	805	Open in IMG/M
3300006175\|Ga0070712_101432975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	603	Open in IMG/M
3300009143\|Ga0099792_10973567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300010047\|Ga0126382_11655751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	596	Open in IMG/M
3300010358\|Ga0126370_10947751	Not Available	781	Open in IMG/M
3300010359\|Ga0126376_11264079	Not Available	756	Open in IMG/M
3300010360\|Ga0126372_10319653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella → unclassified Roholtiella → aff. Roholtiella sp. LEGE 12411	1375	Open in IMG/M
3300010361\|Ga0126378_11827589	Not Available	691	Open in IMG/M
3300010361\|Ga0126378_11906281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	676	Open in IMG/M
3300010362\|Ga0126377_11102761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	862	Open in IMG/M
3300010376\|Ga0126381_100521234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella → unclassified Roholtiella → aff. Roholtiella sp. LEGE 12411	1680	Open in IMG/M
3300010376\|Ga0126381_103076202	Not Available	661	Open in IMG/M
3300011270\|Ga0137391_10548662	All Organisms → cellular organisms → Bacteria → Proteobacteria	974	Open in IMG/M
3300012199\|Ga0137383_10939024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300012205\|Ga0137362_11287149	Not Available	616	Open in IMG/M
3300012362\|Ga0137361_10397652	All Organisms → cellular organisms → Bacteria	1265	Open in IMG/M
3300012362\|Ga0137361_11495086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300012918\|Ga0137396_10068786	All Organisms → cellular organisms → Bacteria	2470	Open in IMG/M
3300012924\|Ga0137413_11267776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	590	Open in IMG/M
3300012930\|Ga0137407_11516571	Not Available	638	Open in IMG/M
3300016270\|Ga0182036_10435388	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300016270\|Ga0182036_10770944	Not Available	782	Open in IMG/M
3300016294\|Ga0182041_10224048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella → unclassified Roholtiella → aff. Roholtiella sp. LEGE 12411	1514	Open in IMG/M
3300016294\|Ga0182041_10470696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1084	Open in IMG/M
3300016294\|Ga0182041_10619737	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300016357\|Ga0182032_10162484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella → unclassified Roholtiella → aff. Roholtiella sp. LEGE 12411	1664	Open in IMG/M
3300016387\|Ga0182040_10301366	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300016387\|Ga0182040_10364204	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300016422\|Ga0182039_11403923	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300016422\|Ga0182039_11568013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300017822\|Ga0187802_10300026	Not Available	626	Open in IMG/M
3300017928\|Ga0187806_1371955	Not Available	513	Open in IMG/M
3300020199\|Ga0179592_10399773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300020580\|Ga0210403_10324663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1260	Open in IMG/M
3300021088\|Ga0210404_10614584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618	Open in IMG/M
3300021171\|Ga0210405_10189533	Not Available	1630	Open in IMG/M
3300021171\|Ga0210405_10277574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella → unclassified Roholtiella → aff. Roholtiella sp. LEGE 12411	1325	Open in IMG/M
3300021171\|Ga0210405_10920428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	663	Open in IMG/M
3300021401\|Ga0210393_10779943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300021404\|Ga0210389_11001099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	648	Open in IMG/M
3300021406\|Ga0210386_10688167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	881	Open in IMG/M
3300021474\|Ga0210390_11004636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	681	Open in IMG/M
3300021476\|Ga0187846_10091859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella → unclassified Roholtiella → aff. Roholtiella sp. LEGE 12411	1311	Open in IMG/M
3300021478\|Ga0210402_10728207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	915	Open in IMG/M
3300021560\|Ga0126371_12542649	Not Available	620	Open in IMG/M
3300021560\|Ga0126371_13190775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300021560\|Ga0126371_13901400	Not Available	502	Open in IMG/M
3300022533\|Ga0242662_10171966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	667	Open in IMG/M
3300022533\|Ga0242662_10231710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300022717\|Ga0242661_1045346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	805	Open in IMG/M
3300022726\|Ga0242654_10103375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M
3300025574\|Ga0208717_1128749	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300025939\|Ga0207665_10921028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300027610\|Ga0209528_1012199	All Organisms → cellular organisms → Bacteria → Proteobacteria	1861	Open in IMG/M
3300027680\|Ga0207826_1141088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300027767\|Ga0209655_10192180	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300027812\|Ga0209656_10224503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	900	Open in IMG/M
3300027825\|Ga0209039_10031109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2575	Open in IMG/M
3300030730\|Ga0307482_1132657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300031543\|Ga0318516_10056296	All Organisms → cellular organisms → Bacteria → Proteobacteria	2152	Open in IMG/M
3300031543\|Ga0318516_10298021	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300031544\|Ga0318534_10791535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533	Open in IMG/M
3300031545\|Ga0318541_10001905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7975	Open in IMG/M
3300031546\|Ga0318538_10233667	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300031573\|Ga0310915_11275470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300031679\|Ga0318561_10052366	All Organisms → cellular organisms → Bacteria → Proteobacteria	2046	Open in IMG/M
3300031680\|Ga0318574_10622840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	633	Open in IMG/M
3300031681\|Ga0318572_10075787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1861	Open in IMG/M
3300031681\|Ga0318572_10232427	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300031681\|Ga0318572_10343378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	885	Open in IMG/M
3300031681\|Ga0318572_10347999	Not Available	879	Open in IMG/M
3300031682\|Ga0318560_10144984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1254	Open in IMG/M
3300031708\|Ga0310686_108866297	All Organisms → cellular organisms → Bacteria → Proteobacteria	1228	Open in IMG/M
3300031719\|Ga0306917_11130179	Not Available	609	Open in IMG/M
3300031724\|Ga0318500_10284008	Not Available	808	Open in IMG/M
3300031736\|Ga0318501_10372011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	770	Open in IMG/M
3300031744\|Ga0306918_10043412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2939	Open in IMG/M
3300031744\|Ga0306918_10705629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	789	Open in IMG/M
3300031744\|Ga0306918_11562875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300031769\|Ga0318526_10400793	All Organisms → cellular organisms → Bacteria → Proteobacteria	561	Open in IMG/M
3300031777\|Ga0318543_10034443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1989	Open in IMG/M
3300031779\|Ga0318566_10603468	All Organisms → cellular organisms → Bacteria → Proteobacteria	534	Open in IMG/M
3300031782\|Ga0318552_10112122	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300031805\|Ga0318497_10112324	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300031821\|Ga0318567_10358349	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300031831\|Ga0318564_10437574	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300031845\|Ga0318511_10010630	All Organisms → cellular organisms → Bacteria	3107	Open in IMG/M
3300031860\|Ga0318495_10446327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300031893\|Ga0318536_10654064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300031897\|Ga0318520_10096825	All Organisms → cellular organisms → Bacteria → Proteobacteria	1650	Open in IMG/M
3300031910\|Ga0306923_12296291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300031941\|Ga0310912_10363123	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300031945\|Ga0310913_10009259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5837	Open in IMG/M
3300031947\|Ga0310909_10005801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	8053	Open in IMG/M
3300031947\|Ga0310909_11456529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300031981\|Ga0318531_10277736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	757	Open in IMG/M
3300032001\|Ga0306922_11938122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300032043\|Ga0318556_10139534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella → unclassified Roholtiella → aff. Roholtiella sp. LEGE 12411	1247	Open in IMG/M
3300032060\|Ga0318505_10012053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3152	Open in IMG/M
3300032060\|Ga0318505_10547985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300032076\|Ga0306924_10567057	All Organisms → cellular organisms → Bacteria	1287	Open in IMG/M
3300032089\|Ga0318525_10496989	Not Available	624	Open in IMG/M
3300032089\|Ga0318525_10547089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	592	Open in IMG/M
3300032090\|Ga0318518_10348203	Not Available	760	Open in IMG/M
3300032091\|Ga0318577_10032659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella → unclassified Roholtiella → aff. Roholtiella sp. LEGE 12411	2258	Open in IMG/M
3300032091\|Ga0318577_10053962	All Organisms → cellular organisms → Bacteria	1811	Open in IMG/M
3300032205\|Ga0307472_100220864	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300032261\|Ga0306920_100861469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Fortieaceae → Roholtiella → unclassified Roholtiella → aff. Roholtiella sp. LEGE 12411	1327	Open in IMG/M
3300033289\|Ga0310914_10016728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5599	Open in IMG/M
3300033289\|Ga0310914_11265913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	640	Open in IMG/M
3300033290\|Ga0318519_10204209	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300034644\|Ga0370548_058468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.21%
Engineered	Engineered	0.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.27%
Aquatic	Environmental → Aquatic	7.94%
Solid Waste	Engineered → Solid Waste	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.48%
Freshwater	Environmental → Aquatic → Freshwater	7.94%
Cave	Environmental → Terrestrial → Cave	0.79%
Grass	Engineered → Solid Waste → Grass	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.54%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.94%
Loam	Environmental → Terrestrial → Soil → Loam	7.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.79%
Composting	Engineered → Solid Waste → Grass → Composting	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	61.11%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.05%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.38%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.79%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.79%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	45.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.38%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.59%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.79%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.79%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.79%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.79%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459018	Litter degradation MG2	Engineered	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005898	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_405	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025574	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2MG_00650290	2170459018	Switchgrass, Maize And Mischanthus Litter	SSAAEAEHPIKPAIIGTGSDPQVAAALEFLQKAVRRDSGARHG
Ga0062385_105354132	3300004080	Bog Forest Soil	ETAEHPIKPLIIGTSKDAQLEAAVDYLQRAVRRDAGAHPG*
Ga0062385_107247301	3300004080	Bog Forest Soil	DAGEHPIKPLVIGTNKDAQLDAAVDYLQRAVRGEAGAHPG*
Ga0062384_1002012281	3300004082	Bog Forest Soil	AAEHPIKPLIIGTSGDAQFAAALDYLQKAVRREAVTHHG*
Ga0062387_1017935981	3300004091	Bog Forest Soil	QGGLETAEHPIKPLIIGTSRDAQLEAAVDYLQRAVRRDAGAHPG*
Ga0062388_1004776133	3300004635	Bog Forest Soil	TAEHPIKPLIIGTAKDAQLEAAVDYLQRAVRRDAGARPG*
Ga0066388_1024302322	3300005332	Tropical Forest Soil	NAEAEHPIKPMIIGTGNDPQVAAALDFLQKAVRREAGAQHG*
Ga0066388_1074933782	3300005332	Tropical Forest Soil	AADAAEHPIKPVIIGTPTDPQLAAAVEFLQRAVRREPGTHHG*
Ga0008090_156622971	3300005363	Tropical Rainforest Soil	TGPLRADATDAAEHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGIHG*
Ga0066699_105805173	3300005561	Soil	HPIKPMIIGTGNDPQVAAALDFLQKAVRRESGAQHG*
Ga0066903_1004592483	3300005764	Tropical Forest Soil	GPARTPAVPAAEPAEHPIKPLIIGTSSDAQFAAALDYLQRAVRREVGVHHG*
Ga0066903_1046103371	3300005764	Tropical Forest Soil	EAEHPIKPMIIGTGNDPQIAAALEFLQKAARREAGAQHG*
Ga0075276_100284863	3300005898	Rice Paddy Soil	ESQQRPIKPLLIGTNNDAQLGAALDYLQRAARREAPMHHG*
Ga0070712_1008074151	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VPAARATTADAAEHPIKPMIIGTGNDPQIAAALDFLQRAVRQDGGTRHG*
Ga0070712_1014329751	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	KGQAAPPPVGAAELSEHPIKPLIIGTSNDAQLTAAFDYLQKAVRREAGAHHG*
Ga0099792_109735671	3300009143	Vadose Zone Soil	ADTAEHPIKPMIIGTGNDPQIAAALDFLQKAARREAGTHRG*
Ga0126382_116557512	3300010047	Tropical Forest Soil	AEHPIKPMIIGTGNDPQMAAALDFLQKAARREAGTHHG*
Ga0126370_109477512	3300010358	Tropical Forest Soil	AEAAEHPIKPLIIGTSGDAQFAAALDYLQRAVRREGGVHHG*
Ga0126376_112640791	3300010359	Tropical Forest Soil	GQAAPPPAGAAELSERPIKPLIIGTSNDAQLTAAFDYLQKAVRREAGAHHG*
Ga0126372_103196532	3300010360	Tropical Forest Soil	AEHPIKPLIIGTSGDAQFAAALDYLQRAVRREGGVHHG*
Ga0126378_118275891	3300010361	Tropical Forest Soil	IRPLVIGTSGDAQFTAALDYLQRAVRREVPAHHG*
Ga0126378_119062812	3300010361	Tropical Forest Soil	LAVGSTQPVAAPQSGAEAAEHPIRPLLIGTSGDAQFTAALDYLQKAVRREAGTHHG*
Ga0126377_111027613	3300010362	Tropical Forest Soil	PIKPMIIGTGSDPQIAAALDYLQKAVRREIGAHHG*
Ga0126381_1005212341	3300010376	Tropical Forest Soil	SGSLASGSTRMPTASQQAGNAETADHPIKPLIIGTSGDAQFAAALNYLQKAVRRDTAVHHG*
Ga0126381_1030762022	3300010376	Tropical Forest Soil	PAAPVEAAAAEPAEHPIKPLIIGTSSDAQFAAALDYLQRAVRREVGVHHG*
Ga0137391_105486621	3300011270	Vadose Zone Soil	DTADTAEHPIKPMIIGTGNDPQIAAALDFLQKAVRREVGTHRG*
Ga0137383_109390241	3300012199	Vadose Zone Soil	ADAAEHPIKPMIIGTGNDFQIAAALDFLQKAVRREVGTHRG*
Ga0137362_112871492	3300012205	Vadose Zone Soil	SAPPPAGAAEVADRPIKPLMLGTGNDAQLAAAFDYLQKAARREAGAHHG*
Ga0137361_103976523	3300012362	Vadose Zone Soil	DAAEHPIKPMIIGTGNDPQIAAALDFLQKAARREVGTHRG*
Ga0137361_114950861	3300012362	Vadose Zone Soil	DAAEHPIKPMIIGTGNDPQIAAALDFLQKAARREAGTHRG*
Ga0137396_100687861	3300012918	Vadose Zone Soil	DPGPLKGQAALPPAGAAELSEHPIKPLIIGTGNDAQLAAAFDYLQKAVRREAGAHHG*
Ga0137413_112677761	3300012924	Vadose Zone Soil	AGRTANAETEHPIKPMIIGTGNDPQVAAALDFLQKAVRREVGAQHG*
Ga0137407_115165712	3300012930	Vadose Zone Soil	RDPAALPPAGAAEASEHPIRPLIIGTSSDAQLAAAFDYLQKAVRREAEAHHG*
Ga0182036_104353882	3300016270	Soil	GPLQAGTAEAAEHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGVHHG
Ga0182036_107709442	3300016270	Soil	GSGSTTAPAASLQAGAEPVEHPIRPLIIGTSGDAQFTAALDYLQRAVRREVPTHHG
Ga0182041_102240481	3300016294	Soil	EHPIKPMIIGTPTDPQLAAAVEFLQRAVRREPATHHG
Ga0182041_104706962	3300016294	Soil	GLLRADTTQAAEHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGIHG
Ga0182041_106197372	3300016294	Soil	AVGSTQPVSVPQAGAEAAEHPIRPLIIGTSGDAQFTAALDYLQKAVRREAGTHHG
Ga0182032_101624841	3300016357	Soil	QPIAAPQAGAEAAEHPIRPLIIGTNGDAQFTAALDYLQKAVRREAGTHHG
Ga0182040_103013661	3300016387	Soil	ASLSGGTAEAAEHPIKPLIIGTNGDAQFAAALDYLQKAVRREVVTHHG
Ga0182040_103642042	3300016387	Soil	TAPPLAGTSEAAEHPIRPLIIGTSGDAQFAAALDYLQKAVRREVGIHHG
Ga0182039_114039231	3300016422	Soil	ESEEHPIKPLVIGTSKDAQLEAAVDYLQRAVRRDAGAHPG
Ga0182039_115680131	3300016422	Soil	IPSAALQGSTVEAAEHPIKPLIIGTSADAQFAAALDYLQKAVRREGGIHHG
Ga0187802_103000261	3300017822	Freshwater Sediment	PPASVQAGTTEPAEHPIKPLIIGTSGDAQFAAALDYLQRAVRREAGIHHG
Ga0187806_13719551	3300017928	Freshwater Sediment	RESGEHPIKPLIIGTTKDAQLDAAVGYLQRAVRSEAGAHPG
Ga0179592_103997732	3300020199	Vadose Zone Soil	NPSPVKGQAAEPPAGAEDLSEHPIKPLIIGTSNDAQLAAAFDYLQKAVRREAGAHHG
Ga0210403_103246631	3300020580	Soil	RTSTAEAEHPIKPMIIGTGNDPQVAAALDFLQKAVRREAGAQHG
Ga0210404_106145841	3300021088	Soil	NAEAEHPIKPMIIGTGNDPQVAAALDFLQKAVRREVGAQHG
Ga0210405_101895334	3300021171	Soil	AEAEHPIKPVIIGTGNDPQVAAALDFLQKAVRRESGAQHG
Ga0210405_102775742	3300021171	Soil	ESGSDTGEHPIKPLIIGTGKDAQLEAAVDYLQRAVRGEAGAHPG
Ga0210405_109204281	3300021171	Soil	TGTAEAEHPIKPMIIGTGNDPQIAAALDFLQKAVRREAGAQHG
Ga0210393_107799431	3300021401	Soil	AGAEDLSEHPIKPLIIGTSNDAQLAAAFDYLQKAVRREAGAHHG
Ga0210389_110010992	3300021404	Soil	EHPIKPVIIGTGNDPQVAAALDFLQKAVRREAGAQHG
Ga0210386_106881671	3300021406	Soil	EAEHPIKPVIIGTGNDPQVAAALDFLQKAVRREAGAQHG
Ga0210390_110046361	3300021474	Soil	DTGEHPIKPLIIGTGKDAQLEAAVDYLQRAVRGEAGAHPG
Ga0187846_100918592	3300021476	Biofilm	AVRTPAAPIQADAAGSSEHPIRPLIIGTNSDAQFAAALDYLQKAVHREGGIHHG
Ga0210402_107282073	3300021478	Soil	EAEHPIKPMIIGTGNDPQVAAALDFLQKAVRREVGAQHG
Ga0126371_125426491	3300021560	Tropical Forest Soil	DAAEHPIKPMIIGTPTDPQLAAAVEFLQRAVRREPATHHG
Ga0126371_131907752	3300021560	Tropical Forest Soil	AKNATRTVRADATETAEHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGIHG
Ga0126371_139014001	3300021560	Tropical Forest Soil	KIPSASLQGSTVEAAEHPIKPLIIGTSADAQFAAALDYLQKAVRRDGVVHHG
Ga0242662_101719662	3300022533	Soil	GSTKPPAAPLQAGAEPAEHPIRPLIIGTSGDAQFTAALDYLQKAVRREVGTHHG
Ga0242662_102317101	3300022533	Soil	EAEHPIKPMIIGTGNDPQVAAALDFLQKAVRRESGAQHG
Ga0242661_10453461	3300022717	Soil	NAEAEHPIKPMIIGTGNDPQVAAALDFLQKAVRREAGAQHG
Ga0242654_101033753	3300022726	Soil	EHPIKPMIIGTGNDPQVAAALDFLQKAVRREVGAQHG
Ga0208717_11287491	3300025574	Arctic Peat Soil	EHPIKPLIIGTVKDAQLDAAVGYLQRAVRRDAGAHPG
Ga0207665_109210282	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	NAETEHPIKPMIIGTGNDPQVAAALDFLQKAVRREVGAQHG
Ga0209528_10121991	3300027610	Forest Soil	GRTANAEAEHPIKPMIIGTGNDPQVAAALDFLQKAVRREVGAQHG
Ga0207826_11410882	3300027680	Tropical Forest Soil	AEHPIKPLIIGTSGDAQFAAALDYLQKAVRREGGVRHG
Ga0209655_101921801	3300027767	Bog Forest Soil	TSQGGLETAEHPIKPLIIGTSKDAQLEAAVDYLQRAVRRDAGAHPG
Ga0209656_102245033	3300027812	Bog Forest Soil	HPIKPMIIGTGNDPQIAAALDFLQKAVRRESGAQHG
Ga0209039_100311095	3300027825	Bog Forest Soil	HPIKPLIIGTSADAQFATALDYLQRAVRREVGIHHG
Ga0307482_11326571	3300030730	Hardwood Forest Soil	LAPASPRTPAASIQGGTTEAAEHPIKPLIIGTSGDAQFTAALDYLQKAVRREAVTHHG
Ga0318516_100562963	3300031543	Soil	TQGATAPPLAGTSEAAEHPIRPLIIGTSGDAQFAAALDYLQKAVRREVGIHHG
Ga0318516_102980211	3300031543	Soil	QAGSAEAAEHPIKPLIIGTSNDAQFAAALDYLQKAVRREAGVHHG
Ga0318534_107915352	3300031544	Soil	GPTQGATAPPLAGTSEAAEHPIRPLIIGTSGDAQFAAALDYLQKAVRREVGIHHG
Ga0318541_100019051	3300031545	Soil	DAAEHPIKPLIIGTSGDAQFAAALDYLQKAVRREAVTHHG
Ga0318538_102336672	3300031546	Soil	HAAGPLRADTTEAAQHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGIHG
Ga0310915_112754701	3300031573	Soil	PIKPLIIGTSNDAQFAAALDYLQKAVRREAGVHHG
Ga0318561_100523663	3300031679	Soil	LAPGPTQGATAPPLAGTSEAAEHPIRPLIIGTSGDAQFAAALDYLQKAVRREVGIHHG
Ga0318561_103255052	3300031679	Soil	SPAVPSRTSAADAPEHPIKPLIIGTSNDPQVAAALDYLQKAVRWDAGTHHG
Ga0318574_106228402	3300031680	Soil	AEAGEHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGVHHG
Ga0318572_100757871	3300031681	Soil	PAVPSRTSAADAPEHPIKPLIIGTSNDPQVAAALDYLQKAVRRDAGTHHG
Ga0318572_102324271	3300031681	Soil	EHPIKPLIIGTSGDAQFAAALDYLQKAVRREAVTHHG
Ga0318572_103433782	3300031681	Soil	RSGGGPLQAGTAEAAEHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGVHHG
Ga0318572_103479991	3300031681	Soil	AGVPLQAGSAEAAEHPIKPLIIGTSSDAQFAAALDYLQKAVRREAGVHHG
Ga0318560_101449841	3300031682	Soil	AEHPIKPMIIGTGSDPQVAAALDYLQRAVRQDAGTHHG
Ga0310686_1088662972	3300031708	Soil	SQSGPETAEHPIKPLIIGTAKDAQLEAAVDYLQRAVRRDAGAHPG
Ga0306917_111301792	3300031719	Soil	GSLAPGSTKTPSASLQGGSAEAAEHPIKPLIIGTSGDAQFAAALDYLQRAVRREGGIHHG
Ga0318500_102840081	3300031724	Soil	SAGVPLQAGSAEAAEHPIKPLIIGTSGDAQFAAALDYLQRAVRREGGVHHG
Ga0318501_103720111	3300031736	Soil	PLAGTSEAAEHPIRPLIIGTSGDAQFAAALDYLQKAVRREVGIHHG
Ga0306918_100434121	3300031744	Soil	EHPIKPMIIGTGSDPQVAAALDYLQRAVRQDAGTHHG
Ga0306918_107056292	3300031744	Soil	AKNATGLLRADTTQAAEHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGIHG
Ga0306918_115628751	3300031744	Soil	AQGPARSAGVPLQAGTAEAGEHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGVHHG
Ga0318526_104007931	3300031769	Soil	VLASRNGAESEEHPIKPLIIGTSKDAQLEAAVDYLQRAVRRDAGAHPG
Ga0318543_100344432	3300031777	Soil	AAEHPIKPMIIGTGSDPQVAAALDYLQKAVRQDAGTHHG
Ga0318566_106034681	3300031779	Soil	PVLASRNGAESEEHPIKPLIIGTSKDAQLEAAVDYLQRAVRRDAGAHPG
Ga0318552_101121222	3300031782	Soil	ATAPPLAGTSEAAEHPIRPLIIGTSGDAQFAAALDYLQKAVRREVGIHHG
Ga0318497_101123242	3300031805	Soil	GSAKNATGLLRADTTQAAEHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGIHG
Ga0318567_103583492	3300031821	Soil	ADTTEAAQHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGIHG
Ga0318564_104375742	3300031831	Soil	NGAESEEHPIKPLIIGTSKDAQLEAAVDYLQRAVRRDAGAHPG
Ga0318511_100106304	3300031845	Soil	AEAAEHPIKPLIIGTSGDAQFAAALDYLQRAVRREGGVHHG
Ga0318495_104463271	3300031860	Soil	DSTEHPIKPMIIGTGNDPQVAAALDFLQKAVRQEAGTHHG
Ga0318536_106540642	3300031893	Soil	GSGTHAAGPLRADTTEAAQHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGIHG
Ga0318520_100968251	3300031897	Soil	AGVPLQGGTAEVAEHPIKPLIIGTGNDAQFAAALDYLQKAVRREVGVHHG
Ga0306923_122962912	3300031910	Soil	GSTAEAAEHPIKPLIIGTSGDAQFAAALDYLQKAVRREGGVRHG
Ga0310912_103631231	3300031941	Soil	KNATGLLRADTTQAAEHPIKPLIIGTSNDAQFAAALDYLQKAVRREAGIHG
Ga0310913_1000925910	3300031945	Soil	LQGGTADAAEHPIKPLIIGTSGDAQFAAALDYLQKAVRREAVTHHG
Ga0310909_1000580114	3300031947	Soil	GSPKMPAAALQGGTADAAEHPIKPLIIGTSGDAQFAAALDYLQKAVRREAVTHHG
Ga0310909_114565292	3300031947	Soil	PLAGTSEAAEHPIRPLIIGTSGDAQFAAALDYLQKAVRREVGVHHG
Ga0318531_102777362	3300031981	Soil	NATGLLRADTTQAAEHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGIHG
Ga0306922_119381222	3300032001	Soil	AARTITADTVEHPIKPMIIGTGNDPQVAAALDYLQKAVRQDAGTHHG
Ga0318556_101395341	3300032043	Soil	PIKPLIIGTSNDAQFAAALDYLQKAVRREVGVHHG
Ga0318505_100120534	3300032060	Soil	LQGGTAEAAEHPIKPLIIGTSGDAQFAAALDYLQRAVRREGGVHHG
Ga0318505_105479851	3300032060	Soil	SRRTAEVAEHPIKPLIIGTGNDAQFAAALDYLQKAVRREVGVHHG
Ga0306924_105670572	3300032076	Soil	QGATAPPLAGTSEAAEHPIRPLIIGTSGDAQFAAALDYLQKAVRREVGVHHG
Ga0318525_104969891	3300032089	Soil	PIKPMIIGTATDPQLTAAVEFLQRAVRREPATHHG
Ga0318525_105470891	3300032089	Soil	ATHAAGPLRADTTEAAQHPIKPLIIGTSNDAQFAAALDYLQKAVRREVGIHG
Ga0318518_103482032	3300032090	Soil	APGSTKTPSASLQGGTAEAAEHPIKPLIIGTSGDAQFAAALDYLQRAVRREGGVHHG
Ga0318577_100326591	3300032091	Soil	PLQAGSAEAAEHPIKPLIIGTSSDAQFAAALDYLQKAVRREAGVHHG
Ga0318577_100539622	3300032091	Soil	GSPKMPSASLPSGTAEAAEHPIKPLIIGTNADAQFAAALDYLQKAVRREVVTHHG
Ga0307472_1002208641	3300032205	Hardwood Forest Soil	MPAASLPGGAAEAAEHPIKPLIIGTNGDAQFAAALDYLQKAVRREVVTHHG
Ga0306920_1008614691	3300032261	Soil	PADHPITPLIIGTSGDAQFSAALDYLQKAVHREMGVHHG
Ga0310914_100167281	3300033289	Soil	PIKPLIIGTSGDAQFAAALDYLQRAVRREGGIHHG
Ga0310914_112659131	3300033289	Soil	SPRPGSADAAEHPIKPMVIGTASDPQMAAALDFLQKAARREAGTHHG
Ga0318519_102042092	3300033290	Soil	PEHPIKPLIIGTSNDPQVAAALDYLQKAVRRDAGTHHG
Ga0370548_058468_572_703	3300034644	Soil	TANAEAEHPIKPMIIGTGNDPQVAAALDFLQKAVRREVGAQHG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066983

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences