NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F066980

Metagenome / Metatranscriptome Family F066980

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F066980
Family Type Metagenome / Metatranscriptome
Number of Sequences 126
Average Sequence Length 75 residues
Representative Sequence VKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ
Number of Associated Samples 110
Number of Associated Scaffolds 126

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 26.19 %
% of genes near scaffold ends (potentially truncated) 68.25 %
% of genes from short scaffolds (< 2000 bps) 85.71 %
Associated GOLD sequencing projects 104
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (58.730 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(15.079 % of family members)
Environment Ontology (ENVO) Unclassified
(38.889 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(61.111 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 49.30%    β-sheet: 0.00%    Coil/Unstructured: 50.70%
Feature Viewer
Powered by Feature Viewer

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 126 Family Scaffolds
PF13545HTH_Crp_2 13.49
PF07883Cupin_2 7.14
PF00884Sulfatase 3.17
PF06676DUF1178 1.59
PF08241Methyltransf_11 1.59
PF07568HisKA_2 1.59
PF13489Methyltransf_23 1.59
PF02518HATPase_c 1.59
PF00795CN_hydrolase 0.79
PF00230MIP 0.79
PF00293NUDIX 0.79
PF11799IMS_C 0.79
PF13185GAF_2 0.79
PF12704MacB_PCD 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 126 Family Scaffolds
COG3920Two-component sensor histidine kinase, HisKA and HATPase domainsSignal transduction mechanisms [T] 1.59
COG5319Uncharacterized conserved protein, DUF1178 domainFunction unknown [S] 1.59
COG0580Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)Carbohydrate transport and metabolism [G] 0.79

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A58.73 %
All OrganismsrootAll Organisms41.27 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000881|JGI10215J12807_1027687All Organisms → cellular organisms → Bacteria957Open in IMG/M
3300000881|JGI10215J12807_1097949All Organisms → cellular organisms → Bacteria790Open in IMG/M
3300000890|JGI11643J12802_10274250Not Available657Open in IMG/M
3300000890|JGI11643J12802_10529420Not Available538Open in IMG/M
3300001139|JGI10220J13317_11146256Not Available588Open in IMG/M
3300002070|JGI24750J21931_1056913All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum619Open in IMG/M
3300002076|JGI24749J21850_1019935Not Available947Open in IMG/M
3300002077|JGI24744J21845_10073626Not Available623Open in IMG/M
3300002239|JGI24034J26672_10080932Not Available593Open in IMG/M
3300002244|JGI24742J22300_10082139Not Available610Open in IMG/M
3300004114|Ga0062593_102295505Not Available607Open in IMG/M
3300004156|Ga0062589_102441718Not Available540Open in IMG/M
3300005093|Ga0062594_103146788Not Available517Open in IMG/M
3300005327|Ga0070658_10093480All Organisms → cellular organisms → Bacteria → Proteobacteria2480Open in IMG/M
3300005335|Ga0070666_11322487Not Available538Open in IMG/M
3300005355|Ga0070671_100657055All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales908Open in IMG/M
3300005439|Ga0070711_101688609Not Available555Open in IMG/M
3300005444|Ga0070694_101896116Not Available509Open in IMG/M
3300005467|Ga0070706_101932856All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum535Open in IMG/M
3300005518|Ga0070699_101233827Not Available686Open in IMG/M
3300005536|Ga0070697_100962730Not Available758Open in IMG/M
3300005546|Ga0070696_101750470Not Available536Open in IMG/M
3300005564|Ga0070664_100052651All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3448Open in IMG/M
3300005614|Ga0068856_100199876All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2013Open in IMG/M
3300005616|Ga0068852_100013429All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales6268Open in IMG/M
3300005618|Ga0068864_100301217All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1501Open in IMG/M
3300005718|Ga0068866_10055902All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum2029Open in IMG/M
3300005718|Ga0068866_10602406Not Available742Open in IMG/M
3300006049|Ga0075417_10453686Not Available640Open in IMG/M
3300006058|Ga0075432_10476208Not Available552Open in IMG/M
3300006175|Ga0070712_100993976All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lupini726Open in IMG/M
3300006196|Ga0075422_10227159All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales777Open in IMG/M
3300006237|Ga0097621_102273154Not Available519Open in IMG/M
3300006847|Ga0075431_100651541Not Available1033Open in IMG/M
3300006847|Ga0075431_101397848Not Available659Open in IMG/M
3300006854|Ga0075425_101240420Not Available846Open in IMG/M
3300006854|Ga0075425_101447645Not Available777Open in IMG/M
3300006871|Ga0075434_102212279Not Available554Open in IMG/M
3300006880|Ga0075429_100231382All Organisms → cellular organisms → Bacteria1619Open in IMG/M
3300006880|Ga0075429_100286409All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter1443Open in IMG/M
3300006914|Ga0075436_100463846Not Available923Open in IMG/M
3300006914|Ga0075436_100513323All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium877Open in IMG/M
3300009098|Ga0105245_10016621All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales6423Open in IMG/M
3300009098|Ga0105245_10479717Not Available1257Open in IMG/M
3300009101|Ga0105247_10260399All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1189Open in IMG/M
3300009153|Ga0105094_10817974Not Available548Open in IMG/M
3300009156|Ga0111538_11708276Not Available793Open in IMG/M
3300009162|Ga0075423_12351446Not Available580Open in IMG/M
3300009176|Ga0105242_10644256All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1029Open in IMG/M
3300009551|Ga0105238_12194831All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. Sn-Cys587Open in IMG/M
3300009553|Ga0105249_10052706All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3716Open in IMG/M
3300010358|Ga0126370_10197950All Organisms → cellular organisms → Bacteria1515Open in IMG/M
3300010360|Ga0126372_10819035All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales924Open in IMG/M
3300010375|Ga0105239_11495968Not Available780Open in IMG/M
3300010397|Ga0134124_10000442All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi35133Open in IMG/M
3300012354|Ga0137366_10841850All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium650Open in IMG/M
3300012514|Ga0157330_1073159All Organisms → cellular organisms → Bacteria → Proteobacteria534Open in IMG/M
3300012882|Ga0157304_1006637Not Available1193Open in IMG/M
3300012898|Ga0157293_10166343All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum637Open in IMG/M
3300012900|Ga0157292_10346068Not Available548Open in IMG/M
3300012905|Ga0157296_10051448Not Available971Open in IMG/M
3300012906|Ga0157295_10176286Not Available663Open in IMG/M
3300012908|Ga0157286_10000156All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi7466Open in IMG/M
3300012911|Ga0157301_10000772All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi4853Open in IMG/M
3300012914|Ga0157297_10286757Not Available613Open in IMG/M
3300012915|Ga0157302_10001674All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi4714Open in IMG/M
3300012961|Ga0164302_10141268All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum1403Open in IMG/M
3300012988|Ga0164306_10457402All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter972Open in IMG/M
3300013096|Ga0157307_1021013All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Marivibrio → Marivibrio halodurans1078Open in IMG/M
3300013100|Ga0157373_10518448Not Available862Open in IMG/M
3300013297|Ga0157378_10181813All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium1979Open in IMG/M
3300013297|Ga0157378_10333070All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1478Open in IMG/M
3300013306|Ga0163162_10002876All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi16391Open in IMG/M
3300015372|Ga0132256_100602676Not Available1213Open in IMG/M
3300015372|Ga0132256_101809089Not Available719Open in IMG/M
3300015374|Ga0132255_100166720All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae3089Open in IMG/M
3300015374|Ga0132255_106203573Not Available506Open in IMG/M
3300018028|Ga0184608_10355330Not Available642Open in IMG/M
3300018051|Ga0184620_10109022Not Available862Open in IMG/M
3300018422|Ga0190265_13722896Not Available508Open in IMG/M
3300019356|Ga0173481_10452869Not Available642Open in IMG/M
3300019356|Ga0173481_10883703Not Available502Open in IMG/M
3300019361|Ga0173482_10002740All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae3816Open in IMG/M
3300019361|Ga0173482_10013169All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2186Open in IMG/M
3300019361|Ga0173482_10580615Not Available559Open in IMG/M
3300020070|Ga0206356_11738512Not Available696Open in IMG/M
3300020075|Ga0206349_1494178Not Available640Open in IMG/M
3300020076|Ga0206355_1284239Not Available526Open in IMG/M
3300020080|Ga0206350_11379726Not Available680Open in IMG/M
3300022892|Ga0247753_1041270Not Available574Open in IMG/M
3300022915|Ga0247790_10187515Not Available545Open in IMG/M
3300023064|Ga0247801_1064111Not Available580Open in IMG/M
3300023071|Ga0247752_1056941Not Available620Open in IMG/M
3300023071|Ga0247752_1059779Not Available609Open in IMG/M
3300023073|Ga0247744_1027877All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum851Open in IMG/M
3300023261|Ga0247796_1051395Not Available718Open in IMG/M
3300023263|Ga0247800_1129079Not Available532Open in IMG/M
3300024055|Ga0247794_10178711Not Available676Open in IMG/M
3300025321|Ga0207656_10681345Not Available526Open in IMG/M
3300025885|Ga0207653_10107686All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales992Open in IMG/M
3300025899|Ga0207642_10803762Not Available598Open in IMG/M
3300025907|Ga0207645_10116865All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter1729Open in IMG/M
3300025909|Ga0207705_11277456Not Available561Open in IMG/M
3300025912|Ga0207707_10497598All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum1040Open in IMG/M
3300025918|Ga0207662_10055438All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum2365Open in IMG/M
3300025929|Ga0207664_11546194All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium585Open in IMG/M
3300025932|Ga0207690_10494904All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum988Open in IMG/M
3300025936|Ga0207670_11209256Not Available640Open in IMG/M
3300025960|Ga0207651_10564049All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales991Open in IMG/M
3300025961|Ga0207712_10062531All Organisms → cellular organisms → Bacteria2647Open in IMG/M
3300025981|Ga0207640_10948338Not Available754Open in IMG/M
3300026075|Ga0207708_11496644Not Available593Open in IMG/M
3300026755|Ga0207632_100201Not Available974Open in IMG/M
3300027873|Ga0209814_10043221All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter1877Open in IMG/M
3300027880|Ga0209481_10622300Not Available560Open in IMG/M
3300027909|Ga0209382_11332861Not Available725Open in IMG/M
3300027909|Ga0209382_11368349Not Available713Open in IMG/M
3300028381|Ga0268264_10663207All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Candidatus Filomicrobium marinum1033Open in IMG/M
3300031538|Ga0310888_10158283All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter1214Open in IMG/M
3300031562|Ga0310886_10382827Not Available825Open in IMG/M
3300031740|Ga0307468_100841059Not Available788Open in IMG/M
3300031892|Ga0310893_10123995All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter976Open in IMG/M
3300031908|Ga0310900_10074600Not Available2089Open in IMG/M
3300032179|Ga0310889_10246506Not Available845Open in IMG/M
3300032180|Ga0307471_103677754Not Available543Open in IMG/M
3300032211|Ga0310896_10143422Not Available1123Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil15.08%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere14.29%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil7.14%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.14%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.97%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere3.97%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere3.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.17%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.17%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.17%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.38%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.38%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.38%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.38%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.59%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.59%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.59%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.59%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.59%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.59%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.59%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.59%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.79%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.79%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.79%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.79%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.79%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.79%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000881Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soilEnvironmentalOpen in IMG/M
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300002070Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4Host-AssociatedOpen in IMG/M
3300002076Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3Host-AssociatedOpen in IMG/M
3300002077Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3Host-AssociatedOpen in IMG/M
3300002239Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2Host-AssociatedOpen in IMG/M
3300002244Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1Host-AssociatedOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009153Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012514Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510EnvironmentalOpen in IMG/M
3300012882Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2EnvironmentalOpen in IMG/M
3300012898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1EnvironmentalOpen in IMG/M
3300012900Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1EnvironmentalOpen in IMG/M
3300012905Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2EnvironmentalOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012908Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2EnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300013096Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2EnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020075Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020076Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)EnvironmentalOpen in IMG/M
3300020080Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022892Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5EnvironmentalOpen in IMG/M
3300022915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4EnvironmentalOpen in IMG/M
3300023064Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6EnvironmentalOpen in IMG/M
3300023071Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5EnvironmentalOpen in IMG/M
3300023073Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5EnvironmentalOpen in IMG/M
3300023261Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6EnvironmentalOpen in IMG/M
3300023263Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6EnvironmentalOpen in IMG/M
3300024055Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6EnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025909Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026755Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01K5-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031892Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032211Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10215J12807_102768733300000881SoilVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ*
JGI10215J12807_109794933300000881SoilDELNVLLWFLDGAERRGRIQATLNARQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
JGI11643J12802_1027425013300000890SoilRQRVKLDLPADVHWMPADEVPKSRPDWGGHERHFESLRRAVDFVMQELTTAGRANAWITTEDGNLTIEQIEKLH*
JGI11643J12802_1052942013300000890SoilLDLPADVHWMPADEVREARPDWGGHERHFESLRRAVDFVMQELTIAGRANVWITTEDGNLTIEQIEKLH*
JGI10220J13317_1114625623300001139SoilLPAEVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTENDNLAIEQIEKLH*
JGI24750J21931_105691313300002070Corn, Switchgrass And Miscanthus RhizosphereIQATLNTRPMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
JGI24749J21850_101993513300002076Corn, Switchgrass And Miscanthus RhizosphereGAERRGRIQATLNARQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
JGI24744J21845_1007362623300002077Corn, Switchgrass And Miscanthus RhizosphereVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
JGI24034J26672_1008093213300002239Corn, Switchgrass And Miscanthus RhizosphereTLNARQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
JGI24742J22300_1008213913300002244Corn, Switchgrass And Miscanthus RhizosphereDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
Ga0062593_10229550523300004114SoilRIQATLNARQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
Ga0062589_10244171813300004156SoilLDLPADVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTENDNLAIEQIEKLH*
Ga0062594_10314678813300005093SoilVKLDLPADVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTENDNLAIEQIEKLH*
Ga0070658_1009348023300005327Corn RhizosphereMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
Ga0070666_1132248713300005335Switchgrass RhizosphereRVKLDLPADVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTENDNLAIEQIEKLH*
Ga0070671_10065705523300005355Switchgrass RhizosphereLKLDLPADVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTENDNLAIEQIEKLH*
Ga0070711_10168860923300005439Corn, Switchgrass And Miscanthus RhizosphereFLDGAEWRRGIQERFNAKQRVKLDLPADVHWMPADEVREARPDWHGHERHFQSLRRAVDFVMHELTIADRANVRISTADSNLAIEQIEKLQ*
Ga0070694_10189611613300005444Corn, Switchgrass And Miscanthus RhizospherePDELNVLLCFLDGAERRRRVQAALNAKQRVKLDLPADVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTENDNLAIEQIEKLH*
Ga0070706_10193285633300005467Corn, Switchgrass And Miscanthus RhizosphereADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
Ga0070699_10123382723300005518Corn, Switchgrass And Miscanthus RhizosphereLNVLLWFLDGAERRGRIQATLNARQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
Ga0070697_10096273013300005536Corn, Switchgrass And Miscanthus RhizospherePADEVREARPDWRGHERHFQSLRSAIDFVMHELTIADRTNVMVTTEDDNLAIEQIEKLQ*
Ga0070696_10175047023300005546Corn, Switchgrass And Miscanthus RhizosphereARQRVKLERPADVHWMPADQVPEASPDWDGHERHFETLRKAIDFVTHELTIAGRANAWIATEGGNLSIEQIEKLQ*
Ga0070664_10005265153300005564Corn RhizosphereVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
Ga0068856_10019987613300005614Corn RhizosphereQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
Ga0068852_10001342933300005616Corn RhizosphereMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ*
Ga0068864_10030121713300005618Switchgrass RhizosphereANAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
Ga0068866_1005590233300005718Miscanthus RhizosphereVKLDLPADVHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
Ga0068866_1060240613300005718Miscanthus RhizosphereRQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
Ga0075417_1045368623300006049Populus RhizosphereMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ*
Ga0075432_1047620823300006058Populus RhizosphereAERRRRIQATLNARQRVKLDRPADVHWMPADQVPDSPDWDGHERHFETLRKAIDFVTHELTIAGRANAWIATEGGNLSIEQIEKLQ*
Ga0070712_10099397613300006175Corn, Switchgrass And Miscanthus RhizosphereVKLDQPADVHWMPADEVREARPDWPGHERHFASLSGAIDFVMQELTIADRANVTITTEDRNLTIEQIEKLH*
Ga0075422_1022715933300006196Populus RhizosphereATLNTRPMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ*
Ga0097621_10227315423300006237Miscanthus RhizosphereVKLDLPADVHWMPADEVREAKPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTENDNLAIEQIEKLH*
Ga0075431_10065154113300006847Populus RhizosphereKLDLPADVHWMPADEVREARPDWGGHERHFESLRRAVDFVMQELTIAGRANAWITTEDGNLTIEQIEKLH*
Ga0075431_10139784813300006847Populus RhizospherePDELNVLLWFLDGAERRRRIQATLNARQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
Ga0075425_10124042023300006854Populus RhizosphereMLDGAERRRRKTLNTNPMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ*
Ga0075425_10144764513300006854Populus RhizosphereDELNVLLWFLDGAERRRSIQERFNAKQRGKLDLPADVHWMPADEVREARPDWRGHERHFESLRSAIDFVMYELTIADRANVMITTEDDNLAIEQIEKLQ*
Ga0075434_10221227913300006871Populus RhizosphereQRVKLDRPADVHWMPADQVPDSPDWDGHERHFETLRKAIDFVTHELTIAGRANAWIATEGGNLSIEQIEKLQ*
Ga0075429_10023138233300006880Populus RhizosphereRVKLDLPADVRWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
Ga0075429_10028640933300006880Populus RhizosphereMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
Ga0075436_10046384613300006914Populus RhizosphereRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
Ga0075436_10051332333300006914Populus RhizosphereVKLDLPADVHWMPADEVREARPGWRGHERHFQSLRRAVDFVAHELTIADRANVMITTEDDNLAIEQIEKLQ*
Ga0105245_1001662173300009098Miscanthus RhizosphereVKLDLPADVRWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
Ga0105245_1047971713300009098Miscanthus RhizospherePADVHWMPADQVPDSPDSDGHERHFETLRKAIDFVTPELTIAGRANAWIATEGGNLSIEQIEKLQ*
Ga0105247_1026039913300009101Switchgrass RhizosphereELNVLLCFLDGAERRRRVQAALNAKQRVKLDLPADVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTEDDNLAIEQIEKLH*
Ga0105094_1081797423300009153Freshwater SedimentDFPADVHWVAADRIAEAGPDWGGNQRHFESLRQAIEFVMQGLTIADRANVWIATEDGNLMVEQIEQLQ*
Ga0111538_1170827613300009156Populus RhizosphereERRRGIQERFNAKQRVKLHLPADVHWMPADEVREARPGWRGHERHFQSLRRAVDFVAHELTIADRANVMITTEDDNLAIEQIEKLH*
Ga0075423_1235144613300009162Populus RhizosphereMKLDLPADVHWMPADEVREARPDWGGHERHFESLRRAVDFVMQELTIAGRANAWITTEDGNLTIEQIEKLH*
Ga0105242_1064425613300009176Miscanthus RhizosphereVQAALNAKQRVKLDLPADVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTENDNLAIEQIEKLH*
Ga0105238_1219483113300009551Corn RhizospherePADVHWVPADGIAEAGPDWGGNQRHFESLRLAIEFVMQGLTIADRANVWIATEDGNLMVEQIEQLQ*
Ga0105249_1005270653300009553Switchgrass RhizosphereMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLCRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
Ga0126370_1019795013300010358Tropical Forest SoilMKFDVPADVHWMPADQVAQTRADGRPHERHFDTLRTAIDFVLHELPIAARANVWLTTADGNLTMEQIERL*
Ga0126372_1081903513300010360Tropical Forest SoilMPADEVPKAKPDWGGHERHFESLPRAIYFVMQELTIAGRANAWIRTEDGNLTIEQIEKLH
Ga0105239_1149596813300010375Corn RhizosphereDVHWMPADQVPDSPDWDGHERHFETLRKAIDFVTHELTIAGRANAWIATEGGNLSIEQIEKLQ*
Ga0134124_1000044213300010397Terrestrial SoilIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARADARITTQDGNLTIEQIERLQ
Ga0137366_1084185033300012354Vadose Zone SoilHWMPADQVSEARPDWGGHERHFESLRRAVDFVMQELTIAGRANAWITTEDGNLTIEQIEKLQ*
Ga0157330_107315923300012514SoilDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
Ga0157304_100663723300012882SoilMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANVRITTEDGNLTIEQIERLQ*
Ga0157293_1016634313300012898SoilHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ*
Ga0157292_1034606813300012900SoilERRRRIQATLNTSPMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ*
Ga0157296_1005144823300012905SoilMVKLDLPADAHWIPTDEISQAAPDWDGHARHFGSLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIERLQ*
Ga0157295_1017628623300012906SoilVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
Ga0157286_10000156103300012908SoilMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMRELTIAARANVRITTQDGNLTIEQIERLQ*
Ga0157301_1000077243300012911SoilMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGALRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ*
Ga0157297_1028675713300012914SoilMKLDLPADVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTEDDNLAIEQIEKLQ*
Ga0157302_1000167453300012915SoilMVKLDLPADVHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
Ga0164302_1014126833300012961SoilMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIDQIERLQ*
Ga0164306_1045740213300012988SoilMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEHIERLQ*
Ga0157307_102101323300013096SoilMVKLDLPADAHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ*
Ga0157373_1051844823300013100Corn RhizosphereMVKLDLPADAHWIPGDEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
Ga0157378_1018181333300013297Miscanthus RhizosphereLPADVHWVPADGIAEAGPDWGGNQRHFESLRQAIEFVMRGLTIADRANVWIATEDGNLMVEQIEQLQ*
Ga0157378_1033307033300013297Miscanthus RhizosphereLSASQRVKLDLPADVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTENDNLAIEQIEKLH*
Ga0163162_10002876143300013306Switchgrass RhizosphereMVKLDLPAAAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ*
Ga0132256_10060267623300015372Arabidopsis RhizosphereLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ*
Ga0132256_10180908923300015372Arabidopsis RhizosphereAERRRRIQATLKARQRVKLDRPADVHWMPADQVPDSPDWDGHERHFETLRKAIDFVTHELTIAGRANAWIATEGGNLSIEQIEKLQ*
Ga0132255_10016672033300015374Arabidopsis RhizosphereMVKLDLPAHVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTMEQIERLQ*
Ga0132255_10620357323300015374Arabidopsis RhizosphereLDLPADVPWMPADEVREARPDWRGHERHFQSLRRAVDFVMHELTIADRANVMITTEDDNLAIEQIEKLQ*
Ga0184608_1035533013300018028Groundwater SedimentNARQRVKLDLPADVHWMPADQVSEARPDWDGHERHFESLRRAVDFVMQELTIAGRANAWITTEDGNLTIEQIEKLQ
Ga0184620_1010902213300018051Groundwater SedimentDGAERRRRIQATLNARQRVKLDRPADVHWMPADQVPEASPDWDGRERHFETLRKAIDFVTHELTIAGRANAWIATEGGNLSIEQIEKLQ
Ga0190265_1372289623300018422SoilVKFDLPADVHWLPADQVSEAEPDWDGNHRHFESLREAIGFVMKNLTIADLANVWVTTEDGDLTREQIEKLQ
Ga0173481_1045286923300019356SoilNVLLWFLDGAERRRRIQATLNARQRVKLDRPADVHWMPADQVPDSPDWDGHERHFETLRKAIDFVTHELTIAGRANAWIATEGGNLSIEQIEKLQ
Ga0173481_1088370313300019356SoilVKLDLPADVHWMPADEVREARPDWHGHERHFQSLRRAVDFVMHELTIADRANVMITTENDNLAMEQIEKLH
Ga0173482_1000274053300019361SoilVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ
Ga0173482_1001316913300019361SoilKLDLPADVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITMENDNLAIEQIEKLH
Ga0173482_1058061513300019361SoilMPADEVREARPDWGGHAIHFESLRRAVDFVMQELTIAGRANAWITTEDGNLTIEQIEKLH
Ga0206356_1173851223300020070Corn, Switchgrass And Miscanthus RhizosphereMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLH
Ga0206349_149417823300020075Corn, Switchgrass And Miscanthus RhizosphereMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ
Ga0206355_128423913300020076Corn, Switchgrass And Miscanthus RhizosphereMVKLDLPADVHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ
Ga0206350_1137972623300020080Corn, Switchgrass And Miscanthus RhizosphereNELNVLLWFLDGAERRRRIQATLNARQRVKLDRPADVHWMPADQVPDSPDWDGHERHFETLRKAIDFVTHELTIAGRANAWIATEGGNLSIEQIEKLQ
Ga0247753_104127023300022892SoilMVKLDLPADAHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ
Ga0247790_1018751513300022915SoilNVLWFLDGAERRGRIQATLNARQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ
Ga0247801_106411123300023064SoilATLNARQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ
Ga0247752_105694113300023071SoilQATLNARQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ
Ga0247752_105977913300023071SoilERRRRIQATLNARQRVKLDRPADVHWMPADQVPDSPDWDGHERHFETLRKAIDFVTHELTIAGRANAWIATEGGNLSIEQIEKLQ
Ga0247744_102787723300023073SoilDELNILLEMLDGAERRRRIQATLNTSPMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAAWANVRITTQDGNLTIEQIERLQ
Ga0247796_105139513300023261SoilPDELNVLLWFLDGAERRRRIQATLSASQRVKLDLPADVHWMPADEVREARPDWGGHERHFESLRRAVDFVMQELTIAARANARITTQDGNLTIEQIERLQ
Ga0247800_112907913300023263SoilDGLNILLEMLDGAERRRRIQATLNTSPMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ
Ga0247794_1017871113300024055SoilEMLDGAERRRRIQATLNTSPMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ
Ga0207656_1068134523300025321Corn RhizosphereADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTIATEDGNLTIEQIEKLQ
Ga0207653_1010768623300025885Corn, Switchgrass And Miscanthus RhizosphereDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ
Ga0207642_1080376213300025899Miscanthus RhizosphereQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ
Ga0207645_1011686513300025907Miscanthus RhizosphereMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIE
Ga0207705_1127745613300025909Corn RhizosphereLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ
Ga0207707_1049759813300025912Corn RhizosphereNTRPMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ
Ga0207662_1005543823300025918Switchgrass RhizosphereVKLDLPADAHWIPADEISQAAPDWDGHGRHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIDQIERLQ
Ga0207664_1154619423300025929Agricultural SoilMPADEVREARPDWHGHERHFQSLRRAVDFVMHELTIADRANVMITTEDDNLAIEQIEKLQ
Ga0207690_1049490423300025932Corn RhizosphereRPMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ
Ga0207670_1120925623300025936Switchgrass RhizosphereVLLCFLDGAERRRRVQAALNAKQRVKLDLPADVHWMPADEVREARPGWRGHERHFQSLRSAVDFVMHELTIADRANVMITTENDNLAIEQIEKLH
Ga0207651_1056404913300025960Switchgrass RhizospherePGRMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ
Ga0207712_1006253143300025961Switchgrass RhizosphereVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ
Ga0207640_1094833823300025981Corn RhizosphereMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQWSMD
Ga0207708_1149664413300026075Corn, Switchgrass And Miscanthus RhizosphereARQRVKLDRPADVHWMPADEVREARPDWRGHERHFQSLRRAVDFVMHELTIADRANVRISTADSNLAIEQIEKLQ
Ga0207632_10020123300026755SoilMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIEKLQ
Ga0209814_1004322123300027873Populus RhizosphereMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ
Ga0209481_1062230013300027880Populus RhizosphereARRSRTAATYPSNAKYQAMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ
Ga0209382_1133286113300027909Populus RhizosphereLNTRPMVKLDLPADVHWIPADEISQAAPDWDGHTRHFGSLRRAIDFVMQELTIAARANVRITTQDGNLTIEQIERLQ
Ga0209382_1136834913300027909Populus RhizosphereADEVREARPDWVGHERHFESLRRAVDFVMQELTIAGRANAWITTEDGNLTIEQIEKLH
Ga0268264_1066320713300028381Switchgrass RhizosphereARRSRTGRRIQATLNTRPMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ
Ga0310888_1015828313300031538SoilMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ
Ga0310886_1038282723300031562SoilADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ
Ga0307468_10084105923300031740Hardwood Forest SoilVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ
Ga0310893_1012399533300031892SoilMVKLDLPADAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQ
Ga0310900_1007460013300031908SoilQRVKLDLPADVRWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ
Ga0310889_1024650623300032179SoilMVKLDLPAHAHWIPADEISQAAPDWDGHARHFGSLRRAIDFVMQELTIAARANARITTQDGNLTIEQIERLQ
Ga0307471_10367775423300032180Hardwood Forest SoilTLSARQRVKRDLPADVHWMPADEVREARPDWRGHERHFESLRSAVDFVVHELTIAGRANAWITTEDGNLTIEQIQELH
Ga0310896_1014342223300032211SoilDLPADVRWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIEQIEKLQ

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.