Metagenome / Metatranscriptome Family F066955

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066955
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	65 residues
Representative Sequence	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP
Number of Associated Samples	102
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.68 %
% of genes near scaffold ends (potentially truncated)	21.43 %
% of genes from short scaffolds (< 2000 bps)	83.33 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.810 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (15.873 % of family members)
Environment Ontology (ENVO)	Unclassified (26.984 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.730 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 34.04% Coil/Unstructured: 65.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF01695	IstB_IS21	57.14
PF00665	rve	7.14
PF13701	DDE_Tnp_1_4	0.79
PF11149	DUF2924	0.79
PF02371	Transposase_20	0.79
PF00078	RVT_1	0.79
PF13439	Glyco_transf_4	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	57.14
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	7.14
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	7.14
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	7.14
COG4584	Transposase	Mobilome: prophages, transposons [X]	7.14
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.81 %
Unclassified	root	N/A	26.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.81 %
Unclassified	root	N/A	26.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.81 %
Unclassified	root	N/A	26.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.19 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	6.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.56 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.19 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	6.35 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.38 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.59 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.19 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	6.35 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.38 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.59 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.19 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	6.35 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.38 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.59 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.19 %
Leptospirillum	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum	3.17 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.59 %
Syntrophobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae	0.79 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.79 %
Humitalea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Humitalea	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.19 %
Leptospirillum sp. Group II	species group	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group II	1.59 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.59 %
Desulfoglaeba	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulfoglaeba	0.79 %
Humitalea rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Humitalea → Humitalea rosea	0.79 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	0.79 %
Leptospirillum sp. Group III	species group	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group III	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.19 %
Leptospirillum sp. Group II	species group	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group II	1.59 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.59 %
Desulfoglaeba alkanexedens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulfoglaeba → Desulfoglaeba alkanexedens	0.79 %
Leptospirillum ferriphilum	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group III → Leptospirillum ferriphilum	0.79 %
Humitalea rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Humitalea → Humitalea rosea	0.79 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02HRIRN	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300002245\|JGIcombinedJ26739_101009360	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300003219\|JGI26341J46601_10053960	Not Available	1250	Open in IMG/M
3300003223\|JGI26343J46809_1003441	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300003505\|JGIcombinedJ51221_10031935	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1924	Open in IMG/M
3300005554\|Ga0066661_10917837	Not Available	512	Open in IMG/M
3300005764\|Ga0066903_108065795	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300005921\|Ga0070766_10181713	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300005921\|Ga0070766_10466199	Not Available	836	Open in IMG/M
3300006176\|Ga0070765_100137856	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	2162	Open in IMG/M
3300006796\|Ga0066665_10795935	Not Available	746	Open in IMG/M
3300009090\|Ga0099827_11562537	Not Available	575	Open in IMG/M
3300009521\|Ga0116222_1022450	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2842	Open in IMG/M
3300009521\|Ga0116222_1259635	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300009525\|Ga0116220_10098690	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300009683\|Ga0116224_10096083	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group III → Leptospirillum ferriphilum	1437	Open in IMG/M
3300009683\|Ga0116224_10428642	Not Available	629	Open in IMG/M
3300009698\|Ga0116216_10647149	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300010047\|Ga0126382_10027694	All Organisms → cellular organisms → Bacteria	3061	Open in IMG/M
3300010048\|Ga0126373_10069326	All Organisms → cellular organisms → Bacteria	3181	Open in IMG/M
3300010339\|Ga0074046_10433299	Not Available	791	Open in IMG/M
3300010341\|Ga0074045_10221484	Not Available	1260	Open in IMG/M
3300010341\|Ga0074045_10907766	Not Available	556	Open in IMG/M
3300010343\|Ga0074044_10191188	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300010359\|Ga0126376_11330975	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300010366\|Ga0126379_12188758	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300010376\|Ga0126381_101337975	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group II	1035	Open in IMG/M
3300010379\|Ga0136449_100043202	All Organisms → cellular organisms → Bacteria	10386	Open in IMG/M
3300010379\|Ga0136449_101249794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Humitalea → Humitalea rosea	1163	Open in IMG/M
3300010379\|Ga0136449_102192287	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300010379\|Ga0136449_102360502	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300010379\|Ga0136449_103110290	Not Available	644	Open in IMG/M
3300012089\|Ga0153924_1037872	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300012201\|Ga0137365_10252138	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300012202\|Ga0137363_10101670	Not Available	2186	Open in IMG/M
3300012209\|Ga0137379_10087694	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2994	Open in IMG/M
3300012357\|Ga0137384_11423694	Not Available	541	Open in IMG/M
3300012361\|Ga0137360_10457908	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300012929\|Ga0137404_12087435	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300014968\|Ga0157379_11428603	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300014968\|Ga0157379_11730991	Not Available	613	Open in IMG/M
3300016294\|Ga0182041_11145149	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300016422\|Ga0182039_11631483	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300017821\|Ga0187812_1070517	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300017823\|Ga0187818_10023267	All Organisms → cellular organisms → Bacteria	2651	Open in IMG/M
3300017924\|Ga0187820_1288661	Not Available	537	Open in IMG/M
3300017932\|Ga0187814_10176087	Not Available	801	Open in IMG/M
3300017932\|Ga0187814_10428520	Not Available	517	Open in IMG/M
3300017942\|Ga0187808_10174461	Not Available	952	Open in IMG/M
3300017943\|Ga0187819_10100443	All Organisms → cellular organisms → Bacteria	1729	Open in IMG/M
3300017943\|Ga0187819_10145337	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300017943\|Ga0187819_10449825	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300017955\|Ga0187817_10042231	All Organisms → cellular organisms → Bacteria	2794	Open in IMG/M
3300017955\|Ga0187817_10051689	All Organisms → cellular organisms → Bacteria	2535	Open in IMG/M
3300017961\|Ga0187778_10673940	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300017966\|Ga0187776_10092568	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300017972\|Ga0187781_11489284	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300017975\|Ga0187782_10277719	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300017994\|Ga0187822_10365007	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300017995\|Ga0187816_10453189	Not Available	574	Open in IMG/M
3300018001\|Ga0187815_10091858	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	1278	Open in IMG/M
3300018006\|Ga0187804_10225400	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300018007\|Ga0187805_10523836	Not Available	557	Open in IMG/M
3300018012\|Ga0187810_10284710	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300018058\|Ga0187766_10039319	All Organisms → cellular organisms → Bacteria	2762	Open in IMG/M
3300018060\|Ga0187765_10399941	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300018062\|Ga0187784_10611719	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300018090\|Ga0187770_10395980	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300018468\|Ga0066662_10924979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	858	Open in IMG/M
3300021171\|Ga0210405_10257363	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300021171\|Ga0210405_10936506	Not Available	656	Open in IMG/M
3300021171\|Ga0210405_11316377	Not Available	530	Open in IMG/M
3300021178\|Ga0210408_10508155	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300021180\|Ga0210396_10760512	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300021405\|Ga0210387_11836493	Not Available	510	Open in IMG/M
3300021406\|Ga0210386_10768537	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300021478\|Ga0210402_11715545	Not Available	554	Open in IMG/M
3300021479\|Ga0210410_10591955	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300021560\|Ga0126371_10108186	All Organisms → cellular organisms → Bacteria	2782	Open in IMG/M
3300026374\|Ga0257146_1052964	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300027570\|Ga0208043_1062046	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300027729\|Ga0209248_10152597	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300027783\|Ga0209448_10032893	All Organisms → cellular organisms → Bacteria	1736	Open in IMG/M
3300027795\|Ga0209139_10116092	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300027812\|Ga0209656_10137628	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300027824\|Ga0209040_10040576	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	2872	Open in IMG/M
3300027825\|Ga0209039_10031063	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulfoglaeba → Desulfoglaeba alkanexedens	2577	Open in IMG/M
3300027854\|Ga0209517_10525718	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group II	640	Open in IMG/M
3300027889\|Ga0209380_10172294	Not Available	1268	Open in IMG/M
3300027905\|Ga0209415_10091309	All Organisms → cellular organisms → Bacteria	3412	Open in IMG/M
3300028047\|Ga0209526_10862695	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum	554	Open in IMG/M
3300030494\|Ga0310037_10025005	All Organisms → cellular organisms → Bacteria	2880	Open in IMG/M
3300030707\|Ga0310038_10205733	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300031090\|Ga0265760_10150717	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300031231\|Ga0170824_118938815	Not Available	744	Open in IMG/M
3300031682\|Ga0318560_10767438	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300031708\|Ga0310686_102314478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1412	Open in IMG/M
3300031716\|Ga0310813_10394420	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300031753\|Ga0307477_10675380	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300031754\|Ga0307475_11055704	Not Available	637	Open in IMG/M
3300031805\|Ga0318497_10539625	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300031846\|Ga0318512_10450707	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300031890\|Ga0306925_10989139	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300031962\|Ga0307479_10473754	Not Available	1236	Open in IMG/M
3300031962\|Ga0307479_11391515	Not Available	661	Open in IMG/M
3300032059\|Ga0318533_10526294	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300032160\|Ga0311301_10008038	All Organisms → cellular organisms → Bacteria	34972	Open in IMG/M
3300032160\|Ga0311301_10231042	All Organisms → cellular organisms → Bacteria	3093	Open in IMG/M
3300032160\|Ga0311301_10539728	All Organisms → cellular organisms → Bacteria	1710	Open in IMG/M
3300032160\|Ga0311301_12738309	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300032180\|Ga0307471_101596065	Not Available	809	Open in IMG/M
3300032180\|Ga0307471_101650836	All Organisms → cellular organisms → Bacteria → Proteobacteria	796	Open in IMG/M
3300032261\|Ga0306920_102534963	Not Available	705	Open in IMG/M
3300032261\|Ga0306920_102548442	Not Available	702	Open in IMG/M
3300032770\|Ga0335085_10166199	All Organisms → cellular organisms → Bacteria	2746	Open in IMG/M
3300032770\|Ga0335085_10745664	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300032770\|Ga0335085_11256039	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300032782\|Ga0335082_10725127	Not Available	856	Open in IMG/M
3300032783\|Ga0335079_10445734	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300032805\|Ga0335078_11496023	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300032892\|Ga0335081_11947945	Not Available	629	Open in IMG/M
3300032954\|Ga0335083_10094318	All Organisms → cellular organisms → Bacteria	2969	Open in IMG/M
3300032955\|Ga0335076_10912522	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300033004\|Ga0335084_10781074	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300033134\|Ga0335073_10117982	All Organisms → cellular organisms → Bacteria → Proteobacteria	3404	Open in IMG/M
3300033134\|Ga0335073_11316364	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.62%
Host-Associated	Host-Associated	2.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.78%
Aquatic	Environmental → Aquatic	19.84%
Plants	Host-Associated → Plants	1.59%
Fungi	Host-Associated → Fungi	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.78%
Freshwater	Environmental → Aquatic → Freshwater	19.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.59%
Mycelium	Host-Associated → Fungi → Mycelium	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.38%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	19.05%
Loam	Environmental → Terrestrial → Soil → Loam	6.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.59%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	19.05%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	13.49%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.59%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	15.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	13.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.11%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	9.52%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.35%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.97%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.79%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003223	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_06666360	2170459010	Grass Soil	MGRAKHRLGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHITSKYLYKLPPAKPEPVEQPQATAQTP
JGIcombinedJ26739_1010093602	3300002245	Forest Soil	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP*
JGI26341J46601_100539601	3300003219	Bog Forest Soil	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRVYQGGKSHITSKYLYKLPPAELEPVEQPQATAQTP*
JGI26343J46809_10034411	3300003223	Bog Forest Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVE
JGIcombinedJ51221_100319353	3300003505	Forest Soil	MGRPKHRPGCAGTWLEVKVRNRQRYLYERTRVYQGGKPHITSKYLYKLPPAQPEPVEEPQAAAQTP*
Ga0066661_109178371	3300005554	Soil	MGRSKHRPGRAGTWLEVKVRNGQRYLYERTRVYEGGKSHITSKYLYKLPPAKPEPVEQPQATAQTP*
Ga0066903_1080657952	3300005764	Tropical Forest Soil	MGRSKHRPGRAGTWLEVKVRNGQRYLYERTRVYEGGRCYIRSKYLYKLPPAKPQPVE*
Ga0070766_101817132	3300005921	Soil	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRIYEGGKSHITSKYLHKLPPAEPEPLEQPQAAAQTP*
Ga0070766_104661992	3300005921	Soil	LVGCNYMGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKPHITSKYLYKLPPAQPEPVEEPQAAAQTP*
Ga0070765_1001378561	3300006176	Soil	MARSKHRPGRAGTWLEVKVRNGQRYLYERTRVYEAGKSHIRSKYLYKLPPAKPQPVDEPQARAQTP*
Ga0066665_107959353	3300006796	Soil	NYMGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYDGGKSHITSKYLRKLPPAKPEPVEEPQATAQTP*
Ga0099827_115625371	3300009090	Vadose Zone Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSRYLYKLPPAEPEPVEEPQATAQTP*
Ga0116222_10224503	3300009521	Peatlands Soil	MGRPKHRPGRAGTWLEVNVRNRHRYLYEHTRVSQRGKSHITSKYLYKLPPAEPE
Ga0116222_12596352	3300009521	Peatlands Soil	MGRAKHRPGRAGTWLEVRVRNGQRYLYERTRVYQGGKSHITSKYLYKLPPAEPELVEQPQATAQTP*
Ga0116220_100986902	3300009525	Peatlands Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP*
Ga0116224_100960831	3300009683	Peatlands Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYEPTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP*
Ga0116224_104286421	3300009683	Peatlands Soil	RAKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPELVEQPQATAQTP*
Ga0116216_106471492	3300009698	Peatlands Soil	MGRLKHLPGRAGTWLEIKVRNGQRYLYERTRVYEGGKPHVTSKYLHKLPPAEREPVEEPEAAAQTP*
Ga0126382_100276941	3300010047	Tropical Forest Soil	MGRSKHRSGRAGIWLEVKVRNGQRYLYERTRVYEGGKANIRSKYLYKLPPAKPESVEEPKATAQTS*
Ga0126373_100693262	3300010048	Tropical Forest Soil	MGRRKHRPGRAGIWLEVKVRNGQRYLYERTRIYEGGKSRIRSKYLYKLPPAQPEPVEEPEPTAQTP*
Ga0074046_104332991	3300010339	Bog Forest Soil	RAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAKPEPVEEPQATAQTP*
Ga0074045_102214841	3300010341	Bog Forest Soil	RPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAKPEPVEEPQATAQTP
Ga0074045_109077661	3300010341	Bog Forest Soil	PPLLTLVGCNYMGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYDGGKSHITSKYLYKLPPAKPEPVEQPQATAQTP*
Ga0074044_101911883	3300010343	Bog Forest Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAKPEPVEEPQATAQTP*
Ga0126376_113309751	3300010359	Tropical Forest Soil	MGRPKHRSGHAGTWLEVKVRNGQRYLYERTRVYEGGKSHITSKYLYKLPPAEPEPVKEPQATAQTP*
Ga0126379_121887583	3300010366	Tropical Forest Soil	MGRSNHRPGRAGTWLEVKVRNRQRYLYERTRVYEDGKSRITSKYLRKLPPAKLEPVEALETTAQTS*
Ga0126381_1013379752	3300010376	Tropical Forest Soil	MGRSKHRPGRAGTWLEVKVRNGQRYLYERTRVYEGGSSYIRSKYLYKLPPAKPQPVE*
Ga0136449_1000432021	3300010379	Peatlands Soil	NLRSLTPVGCNYMGRPKHRPGRAGTWLEVKVRNRQRYLYEPTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP*
Ga0136449_1012497941	3300010379	Peatlands Soil	MGRAKHRPGRGGTWLEVKVRNRQRYLYERTRVYEGGKSRIRSKYLYKLPPAKPEPVQEPEATAQTP*
Ga0136449_1021922872	3300010379	Peatlands Soil	MGRLKHRPGRAGTWLEIKVRNGQRYLYERTRVYEGGKPHVTSKYLHKLPPAEREPVEEPEAAAQTP*
Ga0136449_1023605022	3300010379	Peatlands Soil	MGRPKHRLGRAGTWLEVKVRNRQRYLYERTRVYEAGKSHITSKYLYKLPPAEPEPVEEP*
Ga0136449_1031102901	3300010379	Peatlands Soil	KHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATA*
Ga0153924_10378721	3300012089	Attine Ant Fungus Gardens	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHIISKYLHKLPPAKPEPVEQSQATARTP*
Ga0137365_102521381	3300012201	Vadose Zone Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKSHITSKYLRKLPPAKPEPVEEPQATAQTP*
Ga0137363_101016703	3300012202	Vadose Zone Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKSHITSKYLHKLPPAEPEPVEEQQATAQTP*
Ga0137379_100876943	3300012209	Vadose Zone Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKSHITSKYLRKLPPAKPEPVE
Ga0137384_114236941	3300012357	Vadose Zone Soil	LTLVGCNYMGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKSHITSKYLYKLPPAKPEPVEEPQATAQTP*
Ga0137360_104579082	3300012361	Vadose Zone Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGRKSHITSKYLRKLPPAKPEPVEEPQATAQTP*
Ga0137404_120874352	3300012929	Vadose Zone Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKPRIRSKYLYKLAPAKPEPVEEPQATDHTP*
Ga0157379_114286031	3300014968	Switchgrass Rhizosphere	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKSHIRSKYLYKLPPAKPEPVEEPQTKAQTP*
Ga0157379_117309911	3300014968	Switchgrass Rhizosphere	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRIYDGGKSHITSKYLYKLPPAKPKRVEQPQATAQTP*
Ga0182041_111451492	3300016294	Soil	MGRSKHRPGRAGTWLEVKVRNRQRYLYERTRVYEDGKSHIASKYLRKLPPAKPEPVEALETTAQTS
Ga0182039_116314832	3300016422	Soil	MGRSKHRPGRAGTWLEVKVRNRQRYLYERTRVYEDGKSHIASKYLRKLPPAQPEPVEEPQATAEGP
Ga0187812_10705172	3300017821	Freshwater Sediment	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHITSKYLYKLPPAKPEPVEQPQSTAQTP
Ga0187818_100232673	3300017823	Freshwater Sediment	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPEATAQTP
Ga0187820_12886612	3300017924	Freshwater Sediment	MGRAKQRPGRAGIWLEVKVRNGQRYLYERTRVYEGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP
Ga0187814_101760872	3300017932	Freshwater Sediment	MGRSKHRPGRAGTWLEVKVRNGQRYLYERTRVYEGGKPHITSKYLYKLPPAEPEPVEEPEATAQTP
Ga0187814_104285201	3300017932	Freshwater Sediment	MGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKSHITSKYLHKLPPAEPEPVEEPQATAHTP
Ga0187808_101744612	3300017942	Freshwater Sediment	MGRRKHRPGLAGTWLEVKVRNRQRYLYERTRVYEGGKSHITSKYLHKLPPAEPEPVEEPQATAHTP
Ga0187819_101004432	3300017943	Freshwater Sediment	MGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP
Ga0187819_101453373	3300017943	Freshwater Sediment	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP
Ga0187819_104498252	3300017943	Freshwater Sediment	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHITSKYLYKLPPAEPELVEQPQATARTL
Ga0187817_100422313	3300017955	Freshwater Sediment	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHITSKYLYKLPPAKPEPVEQPQATAQTP
Ga0187817_100516893	3300017955	Freshwater Sediment	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYEGGKSHITSKYLYKLPPAQPEPVQEPQATAQTP
Ga0187778_106739402	3300017961	Tropical Peatland	MSRSKHRPGRAGTWLEVKVRNRRRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQRA
Ga0187776_100925683	3300017966	Tropical Peatland	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHIKSKYLRKLPPAKPEPVEEPQATAQ
Ga0187781_114892841	3300017972	Tropical Peatland	MGRRKHRPGRAGIWLEVKVRNGQRYLYERTRIYEGGGFRIRSKYLYKLPPAKPEPVEEPQATDQTR
Ga0187782_102777192	3300017975	Tropical Peatland	MSRSKHRPGRAGTWLEVKVRNGRRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQRA
Ga0187822_103650072	3300017994	Freshwater Sediment	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHLTSKYLYKLPPAEPEPVEEPQATAQTPLTGTPIMLS
Ga0187816_104531891	3300017995	Freshwater Sediment	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHITSKYLYKLPPAEPELVEQSRATAQTP
Ga0187815_100918581	3300018001	Freshwater Sediment	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEP
Ga0187804_102254001	3300018006	Freshwater Sediment	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYQGGKSHITSKYLYKLPPAQPEPVEEPQATAQTP
Ga0187805_105238361	3300018007	Freshwater Sediment	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHITSKYLYKLPPAEPEPGEQSQATTRTP
Ga0187810_102847101	3300018012	Freshwater Sediment	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKSHITSKYLHKLPPAEPEPVEEPQATAHTP
Ga0187766_100393193	3300018058	Tropical Peatland	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHIKSKYLRKLPPAKPEPVEEPQATAQTP
Ga0187765_103999412	3300018060	Tropical Peatland	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYDGGKSHIKSKYLRKLPPAKPEPVEEPQATAQTP
Ga0187784_106117191	3300018062	Tropical Peatland	MSRSKHRPGRAGTWLEVKVRNGRRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATARTP
Ga0187770_103959802	3300018090	Tropical Peatland	MSRTKHRPGRAGTWLEVKVRNGQRYLYERTRVYEGGKSHITSRYLYKLPPAEPEPVEEPQATARTP
Ga0066662_109249791	3300018468	Grasslands Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP
Ga0210405_102573632	3300021171	Soil	MGRPKHRPGCAGTWLEVKVRNRQRYLYERTRVYQGGKPHITSKYLYKLPPAQPEPVEEPQAAAQTP
Ga0210405_109365061	3300021171	Soil	TWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP
Ga0210405_113163772	3300021171	Soil	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRVYHGGKSHITSKYLYKLPPAKPEPVEQPQATAQTP
Ga0210408_105081552	3300021178	Soil	MGRSKHRPGRAGIWLEVKVRNRQRYLYERTRVYDGGKSHITSKYLYKLPPAKPEPVEQPQATAQTP
Ga0210396_107605122	3300021180	Soil	MGRSKHRPGRSGTWLEVKVRNGQRYLYERTRVYESGKSHIKSKYLYKLPPGEPEPVEEPQATAQTP
Ga0210387_118364931	3300021405	Soil	MGRSKHRPGRAGTWLEVKVRNGQRYLYERTRVYEAGGSHIRSKYLYKLPPAKPQPVDEPPARAQTP
Ga0210386_107685371	3300021406	Soil	MGRSKHRPGRSGTWLEVKVRNGQRYLYERTRVYEGGKSHIKSKYLYKLPPAEPEFVEQPQATAQTP
Ga0210402_117155451	3300021478	Soil	MGRSKHRPGRAGIWLEVKVRNGQRYLYERTRIYEAGKSHIRSKYLYKLPPAKPELVEEPEATARTP
Ga0210410_105919552	3300021479	Soil	MGRSKHRPGRAGIWLEVKVRNRQRYLYERTRVYESGKSHITSKYLYKLPPAKPEPVEQPQATAQTP
Ga0126371_101081863	3300021560	Tropical Forest Soil	MGRRKHRPGRAGIWLEVKVRNGQRYLYERTRIYEGGKSRIRSKYLYKLPPAQPEPVEEPEPTAQTP
Ga0257146_10529641	3300026374	Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKPRIRSKYLYKLPPAKPEPVEEPQATDHTP
Ga0208043_10620462	3300027570	Peatlands Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYEPTRVYQGGKSHITSKYLYKLPPAEPELVEQPQATAQTP
Ga0209248_101525971	3300027729	Bog Forest Soil	MGRLKHRPGRAGTWLEVKVRNGQRYLYERTRVYEGGKPHVTSKYLHKLPPAEREPVEQPQATAQTP
Ga0209448_100328932	3300027783	Bog Forest Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVQEPQATAQTP
Ga0209139_101160922	3300027795	Bog Forest Soil	MGRLKHRPGRAGTWLEVKVRNGQRYLYERTRVYEGRKPYVTSKYLHKLPPAEREPVEEPQATAQTP
Ga0209656_101376281	3300027812	Bog Forest Soil	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRVYQGGKSHITSKYLYKLPPAELEPVEQPQATAQTP
Ga0209040_100405762	3300027824	Bog Forest Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQAIAQTP
Ga0209039_100310631	3300027825	Bog Forest Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAKPEPVEEPQATAQTP
Ga0209517_105257181	3300027854	Peatlands Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYEPTRVYQGGKSHITSKYLYKLPPAEPE
Ga0209380_101722943	3300027889	Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKPHITSKYLYKLPPAQPEPVEEPQAAAQTP
Ga0209415_100913091	3300027905	Peatlands Soil	MGRPKHRLGRAGTWLEVKVRNRQRYLYERTRVYEAGKSHITSKYLYKLPPAEPEPVEEPQATAQTP
Ga0209526_108626951	3300028047	Forest Soil	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYQGGKSHITSKYLYKLPPAELKPGEKPEATPQTP
Ga0310037_100250053	3300030494	Peatlands Soil	MGRAKHRPGRAGTWLEVRVRNGQRYLYERTRVYQGGKSHITSKYLYKLPPAEPELVEQPQATAQTP
Ga0310038_102057332	3300030707	Peatlands Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPELVEQPQATAQTP
Ga0265760_101507171	3300031090	Soil	MGRLKHRPGRAGTWLEIKVRNGQRYLYERTRVYEGGKPHVTSKYLHKLPPAEREPVEEPEATAQTP
Ga0170824_1189388153	3300031231	Forest Soil	WLEVKVRNGQRYLYERTRVYEGGKSHIRSKYLYKLPPAKPGPVEQPQATAQTP
Ga0318560_107674382	3300031682	Soil	MGSSNHRPGRAGTWLEVKVRNRQRYLYERTRVYEDGKSHIASKYLRKLPPAQPEPVEEPEATAQTP
Ga0310686_1023144782	3300031708	Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKSHIKSKYLYKLPPAEPEIVEQPQASARTP
Ga0310813_103944201	3300031716	Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKSHIRSKYLYKLPPAKPE
Ga0307477_106753802	3300031753	Hardwood Forest Soil	MGRSKHRPGRSGTWLEVKVRNGQRYLYERTRVYEGGKSHIGSKYLYKLPPAKPEPVEEPEATAQTS
Ga0307475_110557042	3300031754	Hardwood Forest Soil	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYQGGKSHITGKYLHKLPPAQPEPVQEPQATAQTP
Ga0318497_105396251	3300031805	Soil	MGRSKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLRKLPPAQPEPVEEPQ
Ga0318512_104507072	3300031846	Soil	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHITSKYLRKLPPAKPEPVEQPQATAQT
Ga0306925_109891392	3300031890	Soil	MGRSNHRPGRAGTWLEVKVRNRQRYLYERTRVYEDGKSHIASKYLRKLPPAQPEPVEEPEATAQTP
Ga0307479_104737541	3300031962	Hardwood Forest Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVQEPQATAQTP
Ga0307479_113915151	3300031962	Hardwood Forest Soil	GIWLEVKVRNRQRYLYERTRVYEAGKSHIRSKYLYKLPPAKPQPVEEPPARAQTP
Ga0318533_105262941	3300032059	Soil	MGRSKHRPGRAGTWLEVKVRNRQRYLYERTRVYEDGKSHIASKYLRKLPPAQPEPVEEPEATAQTP
Ga0311301_1000803819	3300032160	Peatlands Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYEPTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP
Ga0311301_102310422	3300032160	Peatlands Soil	MGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPAEPELVEQPQATAQTP
Ga0311301_105397283	3300032160	Peatlands Soil	MGRSKHRPGRAGTWLEVKIRNRQRYLYERTRVYEGGKSHIRSKYLYKLPPAKPEPVEEPEARV
Ga0311301_127383091	3300032160	Peatlands Soil	MGRPKHRPGRAGTWLEVKVRNRQRYLYERTRVYQGGKSHITSKYLYKLPPPEPEPVQEPQATAQTP
Ga0307471_1015960651	3300032180	Hardwood Forest Soil	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRVYQGGKSHITSKYLYKLPPAEPEPVEEPQATAQTP
Ga0307471_1016508362	3300032180	Hardwood Forest Soil	MGRSKHRPGRSGTWLEVKVRNGQRYLYERTRVYEGGKSHIGSKYLYKLPPAKPEPVEQPQATAQTP
Ga0306920_1025349632	3300032261	Soil	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHITSKYLRKLPPAKPEPVEQPQATAQ
Ga0306920_1025484421	3300032261	Soil	RSLTPVGCNYMGRAKHRPGRAGTWLEVKVRNRQRYLYERTRVYEDGKSHIASKYLRKLPPAQPEPVEEPEATAQTP
Ga0335085_101661993	3300032770	Soil	MGRAKHRPGRAGIWLEVKVRNGQRYLYERTRVYEGGKSHIRSKYLYKLPPAKPE
Ga0335085_107456642	3300032770	Soil	MGRSKHRPGRAGTWLEVKVRNGQRYLYERTRVYEGGRSYIRSKYLYKLPPAKPQPVE
Ga0335085_112560392	3300032770	Soil	MGRSKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKSHIRSKYLYKLPPAKPQPVEEPEAKAQTP
Ga0335082_107251271	3300032782	Soil	MGRAKHRPGRAGIWLEVKVRNGQRYLYERTRVYEGGKSHIRSKYLYKLPPAKPEPVEQPPATAQTP
Ga0335079_104457341	3300032783	Soil	MGRSKHRPGRAGTWLEVKVRNRQRYLYERTRVYEGGKSHIRSKYLYKLPPAKPQPVE
Ga0335078_114960232	3300032805	Soil	MGRRKHRTGRGGIWLEVKVRNGQRYLYQRTRVYEGGKSHITSKYLYKLPPAKPEPVEEPQ
Ga0335081_119479451	3300032892	Soil	MGRSKHRPGRAGTWLEVKVRNGQRYLYERTRVYEGGKSHITSKYLYKLPPAQPEPVQEPQATAQTP
Ga0335083_100943181	3300032954	Soil	MGRAKHRPGRAGIWLEVKVRNGQRYLYERTRVYEGGKSHIRSKYLYKLPPAKPEPVEQPPATDQTP
Ga0335076_109125221	3300032955	Soil	MGRPKHRPGRAGTWLEVKVRNGQRYLYERTRVYEGGKSHIISKYLYKLPPAEPKLVQQSQ
Ga0335084_107810741	3300033004	Soil	MGRAKHRPGRAGIWLEVKVRNGQRYLYERTRVYEGGKSHIRSKYLYKLPPAKPQPVE
Ga0335073_101179825	3300033134	Soil	MGRLKHRTGRAGTWLEVKVRNGQRYLYERTRVYEGGKSHITSKYLYKLPSAEPEPVEQSQATAHTP
Ga0335073_113163642	3300033134	Soil	MGRAKHRPGRAGTWLEVKVRNGQRYLYERTRVYDGGKSHITSKYLYKLPPAQPEPVEQPQATAQTP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066955

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences