Metagenome / Metatranscriptome Family F066707

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066707
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	45 residues
Representative Sequence	MYWAIFVVGACLIVIALLAIYVPTIYIRKTNNVIHLLEQIAANTRK
Number of Associated Samples	89
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.75 %
% of genes near scaffold ends (potentially truncated)	21.43 %
% of genes from short scaffolds (< 2000 bps)	75.40 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.349 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (13.492 % of family members)
Environment Ontology (ENVO)	Unclassified (42.063 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.063 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.46% β-sheet: 0.00% Coil/Unstructured: 40.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF07704	PSK_trans_fac	2.38
PF03279	Lip_A_acyltrans	2.38
PF01638	HxlR	2.38
PF05345	He_PIG	2.38
PF04892	VanZ	2.38
PF00072	Response_reg	1.59
PF05015	HigB-like_toxin	1.59
PF07589	PEP-CTERM	1.59
PF00797	Acetyltransf_2	1.59
PF13358	DDE_3	1.59
PF07690	MFS_1	1.59
PF01844	HNH	1.59
PF00294	PfkB	0.79
PF00120	Gln-synt_C	0.79
PF00364	Biotin_lipoyl	0.79
PF00034	Cytochrom_C	0.79
PF13462	Thioredoxin_4	0.79
PF00491	Arginase	0.79
PF13579	Glyco_trans_4_4	0.79
PF13387	DUF4105	0.79
PF07238	PilZ	0.79
PF02742	Fe_dep_repr_C	0.79
PF03739	LptF_LptG	0.79
PF12779	WXXGXW	0.79
PF01471	PG_binding_1	0.79
PF00589	Phage_integrase	0.79
PF13744	HTH_37	0.79
PF04173	DoxD	0.79
PF13742	tRNA_anti_2	0.79
PF01325	Fe_dep_repress	0.79
PF00313	CSD	0.79
PF01551	Peptidase_M23	0.79
PF02590	SPOUT_MTase	0.79
PF02321	OEP	0.79
PF03030	H_PPase	0.79
PF12762	DDE_Tnp_IS1595	0.79
PF03602	Cons_hypoth95	0.79
PF00753	Lactamase_B	0.79
PF02746	MR_MLE_N	0.79
PF13676	TIR_2	0.79
PF00291	PALP	0.79
PF00950	ABC-3	0.79
PF12833	HTH_18	0.79
PF11999	Ice_binding	0.79
PF12225	DUF5981	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	2.38
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.38
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	2.38
COG4423	Uncharacterized conserved protein	Function unknown [S]	2.38
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.59
COG2162	Arylamine N-acetyltransferase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.59
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	1.59
COG4948	L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	Cell wall/membrane/envelope biogenesis [M]	1.59
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.79
COG0609	ABC-type Fe3+-siderophore transport system, permease component	Inorganic ion transport and metabolism [P]	0.79
COG0742	16S rRNA G966 N2-methylase RsmD	Translation, ribosomal structure and biogenesis [J]	0.79
COG0795	Lipopolysaccharide export LptBFGC system, permease protein LptF	Cell wall/membrane/envelope biogenesis [M]	0.79
COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	Translation, ribosomal structure and biogenesis [J]	0.79
COG1108	ABC-type Mn2+/Zn2+ transport system, permease component	Inorganic ion transport and metabolism [P]	0.79
COG1321	Mn-dependent transcriptional regulator MntR, DtxR family	Transcription [K]	0.79
COG1576	23S rRNA pseudoU1915 N3-methylase RlmH	Translation, ribosomal structure and biogenesis [J]	0.79
COG2242	Precorrin-6B methylase 2	Coenzyme transport and metabolism [H]	0.79
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.79
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	0.79
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	0.79
COG3808	Na+ or H+-translocating membrane pyrophosphatase	Energy production and conversion [C]	0.79
COG4606	ABC-type enterochelin transport system, permease component	Inorganic ion transport and metabolism [P]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.35 %
Unclassified	root	N/A	43.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.35 %
Unclassified	root	N/A	43.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.35 %
Unclassified	root	N/A	43.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	37.30 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	22.22 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.17 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.59 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	11.90 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	6.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.17 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1.59 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → environmental samples	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.32 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	6.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.17 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	1.59 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1.59 %
uncultured Armatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → environmental samples → uncultured Armatimonadetes bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	6.35 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	5.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.17 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.59 %
Thiohalocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiohalocapsa	1.59 %
uncultured Armatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → environmental samples → uncultured Armatimonadetes bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	6.35 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.17 %
Thiohalocapsa halophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiohalocapsa → Thiohalocapsa halophila	1.59 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.59 %
uncultured Armatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → environmental samples → uncultured Armatimonadetes bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.65 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	6.35 %
Candidatus Koribacter versatilis Ellin345	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	3.17 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.17 %
Thiohalocapsa halophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiohalocapsa → Thiohalocapsa halophila	1.59 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.59 %
uncultured Armatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → environmental samples → uncultured Armatimonadetes bacterium	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918008\|ConsensusfromContig261453	Not Available	645	Open in IMG/M
3300002908\|JGI25382J43887_10018418	All Organisms → cellular organisms → Bacteria → Acidobacteria	3687	Open in IMG/M
3300002961\|JGI11641J44799_10137566	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	684	Open in IMG/M
3300003218\|JGI26339J46600_10033718	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300003219\|JGI26341J46601_10026172	Not Available	1905	Open in IMG/M
3300003219\|JGI26341J46601_10074901	Not Available	1018	Open in IMG/M
3300003219\|JGI26341J46601_10201049	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300003369\|JGI24140J50213_10099401	Not Available	967	Open in IMG/M
3300004477\|Ga0068971_1263206	Not Available	679	Open in IMG/M
3300004635\|Ga0062388_100199874	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300004635\|Ga0062388_101493393	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	682	Open in IMG/M
3300004635\|Ga0062388_101592481	Not Available	663	Open in IMG/M
3300005468\|Ga0070707_101811229	Not Available	578	Open in IMG/M
3300006052\|Ga0075029_100159426	All Organisms → cellular organisms → Bacteria → Acidobacteria	1391	Open in IMG/M
3300006052\|Ga0075029_100348883	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	953	Open in IMG/M
3300006055\|Ga0097691_1004587	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8113	Open in IMG/M
3300006642\|Ga0075521_10055755	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1736	Open in IMG/M
3300008784\|Ga0103637_1001061	All Organisms → cellular organisms → Bacteria → Acidobacteria	931	Open in IMG/M
3300008787\|Ga0103640_1002283	Not Available	582	Open in IMG/M
3300009029\|Ga0066793_10166998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiohalocapsa → Thiohalocapsa halophila	1283	Open in IMG/M
3300009029\|Ga0066793_10640853	Not Available	604	Open in IMG/M
3300009038\|Ga0099829_10333634	All Organisms → cellular organisms → Bacteria → Acidobacteria	1247	Open in IMG/M
3300009616\|Ga0116111_1001190	All Organisms → cellular organisms → Bacteria	18933	Open in IMG/M
3300009616\|Ga0116111_1013919	All Organisms → cellular organisms → Bacteria	3097	Open in IMG/M
3300009628\|Ga0116125_1149371	Not Available	647	Open in IMG/M
3300009641\|Ga0116120_1022144	All Organisms → cellular organisms → Bacteria	2312	Open in IMG/M
3300009644\|Ga0116121_1069210	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300009644\|Ga0116121_1086437	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	981	Open in IMG/M
3300009644\|Ga0116121_1137513	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	770	Open in IMG/M
3300009644\|Ga0116121_1160779	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	710	Open in IMG/M
3300009644\|Ga0116121_1236929	Not Available	583	Open in IMG/M
3300009645\|Ga0116106_1286625	Not Available	524	Open in IMG/M
3300010339\|Ga0074046_10008057	All Organisms → cellular organisms → Bacteria	8081	Open in IMG/M
3300010339\|Ga0074046_10011285	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6610	Open in IMG/M
3300010341\|Ga0074045_10712190	Not Available	637	Open in IMG/M
3300010379\|Ga0136449_100000003	All Organisms → cellular organisms → Bacteria → Acidobacteria	374583	Open in IMG/M
3300010379\|Ga0136449_103832371	Not Available	565	Open in IMG/M
3300010379\|Ga0136449_103873853	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	561	Open in IMG/M
3300011269\|Ga0137392_10848309	Not Available	753	Open in IMG/M
3300011270\|Ga0137391_11205695	Not Available	604	Open in IMG/M
3300011271\|Ga0137393_11325302	Not Available	609	Open in IMG/M
3300012096\|Ga0137389_10438573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1118	Open in IMG/M
3300014155\|Ga0181524_10026096	All Organisms → cellular organisms → Bacteria	4139	Open in IMG/M
3300014159\|Ga0181530_10546350	Not Available	572	Open in IMG/M
3300014162\|Ga0181538_10541886	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	610	Open in IMG/M
3300014164\|Ga0181532_10074895	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2160	Open in IMG/M
3300014164\|Ga0181532_10227678	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300014322\|Ga0075355_1007663	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2089	Open in IMG/M
3300014492\|Ga0182013_10400500	Not Available	737	Open in IMG/M
3300014501\|Ga0182024_10216417	All Organisms → cellular organisms → Bacteria	2602	Open in IMG/M
3300014501\|Ga0182024_10778626	Not Available	1169	Open in IMG/M
3300014501\|Ga0182024_10820417	Not Available	1131	Open in IMG/M
3300016404\|Ga0182037_10633771	Not Available	910	Open in IMG/M
3300017823\|Ga0187818_10208035	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	854	Open in IMG/M
3300017931\|Ga0187877_1181605	Not Available	832	Open in IMG/M
3300017935\|Ga0187848_10065385	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1715	Open in IMG/M
3300017940\|Ga0187853_10443456	Not Available	571	Open in IMG/M
3300017941\|Ga0187850_10198091	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	921	Open in IMG/M
3300017941\|Ga0187850_10438276	Not Available	568	Open in IMG/M
3300017946\|Ga0187879_10059265	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2239	Open in IMG/M
3300017946\|Ga0187879_10123445	Not Available	1475	Open in IMG/M
3300017946\|Ga0187879_10142859	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1357	Open in IMG/M
3300017946\|Ga0187879_10242464	Not Available	1005	Open in IMG/M
3300017946\|Ga0187879_10277131	Not Available	933	Open in IMG/M
3300017948\|Ga0187847_10122860	Not Available	1424	Open in IMG/M
3300017948\|Ga0187847_10271296	Not Available	926	Open in IMG/M
3300017970\|Ga0187783_10068923	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2605	Open in IMG/M
3300017972\|Ga0187781_11252336	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	546	Open in IMG/M
3300018003\|Ga0187876_1000588	All Organisms → cellular organisms → Bacteria → Acidobacteria	36577	Open in IMG/M
3300018003\|Ga0187876_1014900	All Organisms → cellular organisms → Bacteria → Acidobacteria	3881	Open in IMG/M
3300018025\|Ga0187885_10250596	Not Available	809	Open in IMG/M
3300018025\|Ga0187885_10456869	Not Available	570	Open in IMG/M
3300018042\|Ga0187871_10796345	Not Available	527	Open in IMG/M
3300018468\|Ga0066662_10025619	All Organisms → cellular organisms → Bacteria → Proteobacteria	3404	Open in IMG/M
3300020004\|Ga0193755_1119481	All Organisms → cellular organisms → Bacteria → Acidobacteria	823	Open in IMG/M
3300021475\|Ga0210392_10323865	Not Available	1110	Open in IMG/M
3300025427\|Ga0208077_1000046	All Organisms → cellular organisms → Bacteria → Acidobacteria	10916	Open in IMG/M
3300025442\|Ga0208034_1010597	All Organisms → cellular organisms → Bacteria	3104	Open in IMG/M
3300025484\|Ga0208587_1000539	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	20648	Open in IMG/M
3300025496\|Ga0208191_1026548	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300025579\|Ga0207927_1033666	Not Available	1439	Open in IMG/M
3300025650\|Ga0209385_1156599	Not Available	670	Open in IMG/M
3300026273\|Ga0209881_1047620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiohalocapsa → Thiohalocapsa halophila	1054	Open in IMG/M
3300027432\|Ga0209421_1080769	Not Available	659	Open in IMG/M
3300027698\|Ga0209446_1156241	Not Available	589	Open in IMG/M
3300027698\|Ga0209446_1160072	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	581	Open in IMG/M
3300027812\|Ga0209656_10000845	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	19820	Open in IMG/M
3300027812\|Ga0209656_10065815	Not Available	1990	Open in IMG/M
3300027812\|Ga0209656_10092017	All Organisms → cellular organisms → Bacteria → Acidobacteria	1608	Open in IMG/M
3300027812\|Ga0209656_10099887	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300027812\|Ga0209656_10222637	Not Available	904	Open in IMG/M
3300027824\|Ga0209040_10276497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300027846\|Ga0209180_10044867	All Organisms → cellular organisms → Bacteria → Acidobacteria	2425	Open in IMG/M
3300027869\|Ga0209579_10027919	All Organisms → cellular organisms → Bacteria	3101	Open in IMG/M
3300027887\|Ga0208980_10001823	All Organisms → cellular organisms → Bacteria	12938	Open in IMG/M
3300027902\|Ga0209048_10003469	All Organisms → cellular organisms → Bacteria	15293	Open in IMG/M
3300027905\|Ga0209415_10167141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → environmental samples → uncultured Armatimonadetes bacterium	2162	Open in IMG/M
3300031057\|Ga0170834_105765389	Not Available	683	Open in IMG/M
3300031234\|Ga0302325_10086623	All Organisms → cellular organisms → Bacteria	5955	Open in IMG/M
3300031235\|Ga0265330_10130492	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	1070	Open in IMG/M
3300031236\|Ga0302324_100655506	Not Available	1492	Open in IMG/M
3300031241\|Ga0265325_10179862	Not Available	985	Open in IMG/M
3300031242\|Ga0265329_10183863	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	684	Open in IMG/M
3300031242\|Ga0265329_10191779	Not Available	671	Open in IMG/M
3300031247\|Ga0265340_10047146	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	2100	Open in IMG/M
3300031344\|Ga0265316_11145654	Not Available	539	Open in IMG/M
3300031708\|Ga0310686_101615404	Not Available	645	Open in IMG/M
3300031708\|Ga0310686_102481902	Not Available	722	Open in IMG/M
3300031720\|Ga0307469_10262672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1398	Open in IMG/M
3300031912\|Ga0306921_11679022	Not Available	687	Open in IMG/M
3300031942\|Ga0310916_10909077	Not Available	738	Open in IMG/M
3300032160\|Ga0311301_10010499	All Organisms → cellular organisms → Bacteria → Acidobacteria	29602	Open in IMG/M
3300032160\|Ga0311301_11428700	Not Available	860	Open in IMG/M
3300032173\|Ga0315268_10519855	Not Available	1175	Open in IMG/M
3300032205\|Ga0307472_100381423	Not Available	1171	Open in IMG/M
3300032205\|Ga0307472_101481060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300032770\|Ga0335085_10544939	All Organisms → cellular organisms → Bacteria → Acidobacteria	1316	Open in IMG/M
3300032829\|Ga0335070_10258763	All Organisms → cellular organisms → Bacteria → Acidobacteria	1702	Open in IMG/M
3300032829\|Ga0335070_10621014	All Organisms → cellular organisms → Bacteria → Acidobacteria	1015	Open in IMG/M
3300032892\|Ga0335081_10026067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9434	Open in IMG/M
3300032892\|Ga0335081_10122487	All Organisms → cellular organisms → Bacteria	3796	Open in IMG/M
3300032893\|Ga0335069_12056959	Not Available	601	Open in IMG/M
3300032893\|Ga0335069_12702182	Not Available	510	Open in IMG/M
3300033513\|Ga0316628_104060945	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	522	Open in IMG/M
3300034125\|Ga0370484_0138741	Not Available	649	Open in IMG/M
3300034163\|Ga0370515_0082152	All Organisms → cellular organisms → Bacteria	1398	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.24%
Host-Associated	Host-Associated	4.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.79%
Aquatic	Environmental → Aquatic	44.44%
Plants	Host-Associated → Plants	4.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.21%
Freshwater	Environmental → Aquatic → Freshwater	41.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.76%
Marine	Environmental → Aquatic → Marine	1.59%
Sediment	Environmental → Aquatic → Sediment	1.59%
Peat	Environmental → Terrestrial → Peat	1.59%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	39.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	19.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.76%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.59%
Loam	Environmental → Terrestrial → Soil → Loam	1.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.59%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.79%
Lake	Environmental → Aquatic → Freshwater → Lake	0.79%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	29.37%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	14.29%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.49%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	9.52%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.35%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.76%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.59%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.79%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.79%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	13.49%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	11.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	9.52%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.35%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.56%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	5.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	4.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.38%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.38%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.38%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.38%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.59%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.59%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.59%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.59%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.59%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.59%
Wetland Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil	1.59%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.79%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004477	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300008784	Microbial communities from wetland soil in Czech Republic - M1_cDNA	Environmental	Open in IMG/M
3300008787	Microbial communities from wetland soil in Czech Republic - R3_cDNA	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014322	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300025427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025442	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)	Environmental	Open in IMG/M
3300025484	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025496	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300026273	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated	Open in IMG/M
3300031242	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG	Host-Associated	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Bog_all_C_02743860	2140918008	Soil	MNWPILVLGACLVVVALLAIYVPTVYIRKTNVMIHLLEQIAANTRR
JGI25382J43887_100184181	3300002908	Grasslands Soil	MQWPFALVGACVVLVALLTAYLPTIYIRKTNKVIALLEQIAANTKK*
JGI11641J44799_101375661	3300002961	Wetland	MSSMALVGACVIVIALVAIYVPTVYIRKTNKVLKVLEQIEANTRK*
JGI26339J46600_100337183	3300003218	Bog Forest Soil	MYWPTLVFGFCLIVIALLAVYVPTLYIRKTNAVIKLLEQIAANTRK*
JGI26341J46601_100261721	3300003219	Bog Forest Soil	MWAIALPIGSLLLIALLAIYVPTIYIRKTNKMIALLEQIAVNTRK*
JGI26341J46601_100749012	3300003219	Bog Forest Soil	MYLPSFVFGICLAVIAGLAIYVPTIYIRKTNATIKLLEQIAVNTGK*
JGI26341J46601_102010491	3300003219	Bog Forest Soil	MYLSSVVVGTCLVVIALLAIYVPTVYIRKTNVMIKLLEQIAANTRK*
JGI24140J50213_100994011	3300003369	Arctic Peat Soil	MIAFFVPVASLVLIAVLVLYVPTLYIRKTNKMIQLLEQIAANTRK*
Ga0068971_12632062	3300004477	Peatlands Soil	MYWATVVLGACVIVVAVLAIYVPTVYIRKTNVLIHLLEQIAANTRK*
Ga0062388_1001998743	3300004635	Bog Forest Soil	MYWSSFIPGACLLVIALMALYVPTVYIRKTNAMIKLLEEIAANTRK*
Ga0062388_1014933932	3300004635	Bog Forest Soil	MFGTTLVIGACVIVIALLAIYVPTIYIRKTNKLIDLLEQIAANTRK*
Ga0062388_1015924811	3300004635	Bog Forest Soil	MYWMSYLVGVCLVVIAVLAVYVPTVYIRKTNVMIHLLEQIAANTRK*
Ga0070707_1018112291	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MWSFAMTGGALVLIALLAAYVPTIYIRKTNKMLRVLEQIASNTQH*
Ga0075029_1001594263	3300006052	Watersheds	MWAIAISVACLMMIALLAIYVPTIYIRKTNKMIQLLEQVAANTRK*
Ga0075029_1003488832	3300006052	Watersheds	MWAMSVPIACLVLIALLAIYVPTIYIRKTNKMIQLLEQIEANTRK*
Ga0097691_10045878	3300006055	Arctic Peat Soil	VCLILIALLAIYVPTIYIRKTNKMIHILEQIAANTRK*
Ga0075521_100557552	3300006642	Arctic Peat Soil	MYSLTFVFGACAVIIALMAIYVPTVYIRKTNVMIHLLEQIVANTRK*
Ga0103637_10010611	3300008784	Wetland Soil	MSVPIACLVLIALLAIYVPTIYIRKTNKVIDLLQQIAANSRK*
Ga0103640_10022831	3300008787	Wetland Soil	MYWPTFVLGVCVVVVAVLAIYVPTVYIRKTNVMIHLLEQIAANGHK*
Ga0066793_101669982	3300009029	Prmafrost Soil	MTSSILVLSASLVVIALLAIYVPTVYIRKTNVMIKLLEQIAANTRK*
Ga0066793_106408532	3300009029	Prmafrost Soil	MPILVLAACLVVIALLAIYVPTVYIRKTNVMIHLLEQIAANGRK*
Ga0099829_103336342	3300009038	Vadose Zone Soil	MQWPLALVGACVVLVALLTAYVPTIYIRKTNKVIALLEQIAANTKK*
Ga0116111_10011904	3300009616	Peatland	MYGSILVLGACLVVLALLAIYFPTVYIRKTNVMIHLLEQIAANGRK*
Ga0116111_10139196	3300009616	Peatland	MYGSILVLGACLVVIAALAIYVPTVYIRKTNAMIRLLEQIAANTRK*
Ga0116125_11493711	3300009628	Peatland	MMMYSAVLIPAACLIVIALLALYVPTIYIRKTNKVIHLLEEIAANARK*
Ga0116120_10221443	3300009641	Peatland	MIGGVMYGSILVLGACLVVLALLAIYFPTVYIRKTNVMIHLLEQIAANGRK*
Ga0116121_10692102	3300009644	Peatland	MFGYTFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQ
Ga0116121_10864373	3300009644	Peatland	FGYTFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIAANTRK*
Ga0116121_11375131	3300009644	Peatland	MFGYSFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEEIVANTRK*
Ga0116121_11607792	3300009644	Peatland	VVIAVLAIYVPTVYIRKTNVMIHLLEQIAANTRK*
Ga0116121_12369291	3300009644	Peatland	MVIALLAIYVPTIYIRKTNKMIALLEQIAANTRK*
Ga0116106_12866251	3300009645	Peatland	MFGYSFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEEIAANTRK*
Ga0074046_100080573	3300010339	Bog Forest Soil	MYWPTLVFGFCLIVLALLAIYFPTIYIRKTNKMIHLLEQIAANTSK*
Ga0074046_100112854	3300010339	Bog Forest Soil	MWAIALPIGSLLLIALLAIYVPTIYIRKTNKMIALLEQTAVNTRK*
Ga0074045_107121902	3300010341	Bog Forest Soil	MLIALLALYVPTIYIRKTNKVIKILEQIADNTRK*
Ga0136449_10000000363	3300010379	Peatlands Soil	MGWPFAVATGCLVLLALLAIYVPTIYVRKTNKMIQLLEQIAANTRK*
Ga0136449_1038323711	3300010379	Peatlands Soil	MYWASFVVGICVIVIAFLAIYFPTIYIRKTNKLLDLLEQIAANTRK*
Ga0136449_1038738531	3300010379	Peatlands Soil	SIVIVALLAIYVPTIYIRKTNKLMAILDKIEANTRK*
Ga0137392_108483091	3300011269	Vadose Zone Soil	MWSFALLGGCIILIALLAAYVPTIYIRKTNKILTALEQI
Ga0137391_112056951	3300011270	Vadose Zone Soil	MQWSLALVGACVVLVALLAAYVPTIYIRKTNKVIALLEQIAANTKK*
Ga0137393_113253023	3300011271	Vadose Zone Soil	MWSFALLGGCIILIALLAAYVPTIYIRKTNKILTALEQIAA
Ga0137389_104385732	3300012096	Vadose Zone Soil	MQWSFVLLGACVVLVALLAAYVPTIYIRKTNKVIALLEQIAANTKK*
Ga0181524_100260965	3300014155	Bog	MFGYSFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIAANTRK*
Ga0181530_105463501	3300014159	Bog	TSEASMFGYSFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIAANTRK*
Ga0181538_105418861	3300014162	Bog	MYGSIVVLGACVIVIALLAIYVPTIYIRKTNKMMHILEQIETNTRK*
Ga0181532_100748954	3300014164	Bog	FVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIAANTRK*
Ga0181532_102276782	3300014164	Bog	MFGYTFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIAANTR
Ga0075355_10076632	3300014322	Natural And Restored Wetlands	MLYWPSFVLGFCVIALALLAFYVPTIYIRKTNKLIHLLEEIAGNTRK*
Ga0182013_104005001	3300014492	Bog	MYFWPMFVAGTCLVIITVLAIYIPTIYIRKTNKLIDLLGQIATNTSK*
Ga0182024_102164174	3300014501	Permafrost	MTFTIQLVLACLIVIALLAIYVPTVYIRKTNAMIHLLEQIAANTRK*
Ga0182024_107786261	3300014501	Permafrost	MFLSIYLIGTSLIVMALLAIYVPTVYIRKTNVMIHLLEEIAASARK*
Ga0182024_108204171	3300014501	Permafrost	MYWPTFVLGMCVIVVALLAIYVPTVYIRKTNAMIRLLEQITANTRR*
Ga0182037_106337712	3300016404	Soil	MFYFPSLVSALCLLVIALMAIYVPAVYIRKTNAMIKLLQEMAANTRK
Ga0187818_102080352	3300017823	Freshwater Sediment	MMYWPSFVFGSCLIVIAVLAIYVPTIYIRKTNKVITLLEQIAANTRK
Ga0187877_11816051	3300017931	Peatland	MIGGVMYGSILVLGACLVVLALLAIYFPTVYIRKTNVMIHLLEQIAANGRK
Ga0187848_100653852	3300017935	Peatland	MFGYSFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIAANTRK
Ga0187853_104434561	3300017940	Peatland	MFGYSFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEEIAANTRK
Ga0187850_101980911	3300017941	Peatland	GYSFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIAANTRK
Ga0187850_104382761	3300017941	Peatland	MFGYSFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIA
Ga0187879_100592655	3300017946	Peatland	MFGYSFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIAANTR
Ga0187879_101234451	3300017946	Peatland	MMMYSAVLIPAACLIVIALLALYVPTIYIRKTNKVIHLLEEIAANARK
Ga0187879_101428593	3300017946	Peatland	FVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIAANTRK
Ga0187879_102424643	3300017946	Peatland	MFGYSFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEEIAANTR
Ga0187879_102771312	3300017946	Peatland	FVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEEIAANTRK
Ga0187847_101228601	3300017948	Peatland	MYGSVLVLCTCLMVIALLAIYVPTIYIRKTNKMIALLEQIAANTRK
Ga0187847_102712961	3300017948	Peatland	MFGYTFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIAANTRK
Ga0187783_100689232	3300017970	Tropical Peatland	MYWAIFVVGACLIVIALLAIYVPTIYIRKTNNVIHLLEQIAANTRK
Ga0187781_112523362	3300017972	Tropical Peatland	MYWAIFVVGSCLIVIALLTIYVPTVYIRKTNKVIQLLEQIAAN
Ga0187876_10005883	3300018003	Peatland	MYGSILVLGACLVVLALLAIYFPTVYIRKTNVMIHLLEQIAANGRK
Ga0187876_10149003	3300018003	Peatland	MYGYGAVVGACVVVIAALAVYVPTVYIRKTNTMIKLLEQIAANTRN
Ga0187885_102505962	3300018025	Peatland	MFGYSFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIAAN
Ga0187885_104568692	3300018025	Peatland	MFGYTFVIGVCLVVIAVLAIYVPTVYIRKTNVMIHLLEQIA
Ga0187871_107963452	3300018042	Peatland	CLVVIAVLAIYVPTVYIRKTNVMIHLLEEIAANTRK
Ga0066662_100256195	3300018468	Grasslands Soil	MQWPFALVGACVVLVALLTAYLPTIYIRKTNKVIALLEQIAANTKK
Ga0193755_11194811	3300020004	Soil	MAWTFALPVACLTLIALIAVYFPTLYIRKTNKMLSLLEQIAANTRK
Ga0210392_103238651	3300021475	Soil	MMMYWCIVVPAACLIVIALLSLYVPTIYIRKTNKLIHLLEEIAANTRK
Ga0208077_10000466	3300025427	Arctic Peat Soil	MIAFFVPVASLVLIAVLVLYVPTLYIRKTNKMIQLLEQIAANTRK
Ga0208034_10105977	3300025442	Peatland	MYGSILVLGACLVVIAALAIYVPTVYIRKTNAMIRLLEQIAANTRK
Ga0208587_10005391	3300025484	Arctic Peat Soil	MWAFAVPIVCLILIALLAIYVPTIYIRKTNKMIHILEQIAANTRK
Ga0208191_10265481	3300025496	Peatland	MNWPIFVLGACVIVVALLAIYVPTVYIRKTNVMVHLLEQISANTRR
Ga0207927_10336662	3300025579	Arctic Peat Soil	MTPSILVLSASLIVVALLAIYVPTVYIRKTNVMIHLLEQIAANTRK
Ga0209385_11565991	3300025650	Arctic Peat Soil	MYSLTFVFGACAVIIALMAIYVPTVYIRKTNVMIHLLEQIVANTRK
Ga0209881_10476201	3300026273	Soil	MLSGWVYVVHTLIGGVMTSSILVLSASLVVIALLAIYVPTVYIRKTNVMIHLLEQIAANTRR
Ga0209421_10807692	3300027432	Forest Soil	MYSFSFVFGACAVIVAVMAIYVPTVYIRKTNVMIHLLEQIAANTRK
Ga0209446_11562412	3300027698	Bog Forest Soil	MYWSSFIPGACLLVIALMALYVPTVYIRKTNAMIKLLEEIAANTRK
Ga0209446_11600721	3300027698	Bog Forest Soil	MFGTTLVIGACVIVIALLAIYVPTIYIRKTNKLIDLLEQIAANTRK
Ga0209656_1000084520	3300027812	Bog Forest Soil	MYLPSFVFGICLAVIAGLAIYVPTIYIRKTNATIKLLEQIAVNTGK
Ga0209656_100658153	3300027812	Bog Forest Soil	MWAIALPIGSLLLIALLAIYVPTIYIRKTNKMIALLEQIAVNTRK
Ga0209656_100920171	3300027812	Bog Forest Soil	MYWPTLVFGFCLIVLALLAIYFPTIYIRKTNKMIHLLEQIAANTSK
Ga0209656_100998871	3300027812	Bog Forest Soil	MYWPTLVFGFCLIVIALLAVYVPTLYIRKTNAVIKLLEQIAANTRK
Ga0209656_102226371	3300027812	Bog Forest Soil	MYLSSVVVGTCLVVIALLAIYVPTVYIRKTNVMIKLLEQIAANTRK
Ga0209040_102764972	3300027824	Bog Forest Soil	MYWSSFIPGACLLVIALMALYVPTVYIRKTNAMIKLLQEIAANTRK
Ga0209180_100448672	3300027846	Vadose Zone Soil	MQWPLALVGACVVLVALLTAYVPTIYIRKTNKVIALLEQIAANTKK
Ga0209579_100279194	3300027869	Surface Soil	MEWSFALTVGCTVLIALLAIYVPTIYIRKTNKIINLLEQIQANTRK
Ga0208980_1000182314	3300027887	Wetland	MSSMALVGACVIVIALVAIYVPTVYIRKTNKVLKVLEQIEANTRK
Ga0209048_1000346915	3300027902	Freshwater Lake Sediment	MYWATFVPGACLIIIALLALYVPTIYIRKTNKVIQLLEQIAANKGK
Ga0209415_101671411	3300027905	Peatlands Soil	MGWPFAVATGCLVLLALLAIYVPTIYVRKTNKMIQLLEQIAANTRK
Ga0170834_1057653891	3300031057	Forest Soil	MMMYWYVLVPAACLIVIALLALYVPTIYIRKTNKLIHLLEEIAANTRK
Ga0302325_100866235	3300031234	Palsa	MYWMSYLVGVCLVVIALLAIYVPTVYIRKTNVMIHLLEQIAANTRK
Ga0265330_101304921	3300031235	Rhizosphere	MILIALLAIYVPTIYIRKTNKMIHLLEEIAANARK
Ga0302324_1006555063	3300031236	Palsa	GVCLVVIALLAIYVPTVYIRKTNVMIHLLEQIAANTRK
Ga0265325_101798622	3300031241	Rhizosphere	MWAIALPVVCLILIALLVVYVPTIYISKTNKMIHLLEQIAANTRK
Ga0265329_101838632	3300031242	Rhizosphere	VFRPRVEAFMWTMAIPAACMILIALLAIYVPTIYIRKTNKMIHLLEEIAANARK
Ga0265329_101917791	3300031242	Rhizosphere	MLYWPSFVLGTCLILLALLALYVPTIYIRKTNVMIRLLEEIAANTRK
Ga0265340_100471462	3300031247	Rhizosphere	MWTMAIPAACMILIALLAIYVPTIYIRKTNKMIHLLEEIAANARK
Ga0265316_111456541	3300031344	Rhizosphere	YWPSFVLGTCLILLALLALYVPTIYIRKTNVMIRLLEEIAANSRK
Ga0310686_1016154042	3300031708	Soil	MMMYTAVLIPAGCLIVIALLGLYVPTIYIRKTNKIIHLLEEIAANTGKS
Ga0310686_1024819021	3300031708	Soil	MVMYWCIVVPAVCLIVIALLALYVPTIYIRKTNKLIHLLEEIVANTRK
Ga0307469_102626722	3300031720	Hardwood Forest Soil	MQWSFALLGTCVVLVALLAAYVPTIYIRKTNKVIALLEQIAANTKK
Ga0306921_116790221	3300031912	Soil	MFYFPSLVSALCLLVIALMAIYVPTVYIRKTNAMIKLLQEMAANTRK
Ga0310916_109090772	3300031942	Soil	MWSMALVGACVILIALMAVYVPTVYIRKTNKVLKLLEQIEANTRK
Ga0311301_1001049919	3300032160	Peatlands Soil	MYWATVVLGACVIVVAVLAIYVPTVYIRKTNVLIHLLEQIAANTRK
Ga0311301_114287001	3300032160	Peatlands Soil	MYWASFVVGICVIVIAFLAIYFPTIYIRKTNKLLDLLEQIAANTRK
Ga0315268_105198551	3300032173	Sediment	IIGVALLAIYVATIYIRKTNKLAALLEIIVLNTRK
Ga0307472_1003814231	3300032205	Hardwood Forest Soil	MHWPFAMVGACVVLIALLTAYVPTVYIRKTNKMIALLEQIAANTKK
Ga0307472_1014810602	3300032205	Hardwood Forest Soil	SMQWSFALLGTCVVLVALLAAYVPTIYIRKTNKVIALLEQIAANTKK
Ga0335085_105449393	3300032770	Soil	MWAMSVPIACLVLIALLAIYVPTIYIRKTNKMIHILEEIAANSRK
Ga0335070_102587631	3300032829	Soil	MTVILPVASLVVLALLALYVPTIYIRKTNKVIQLLEQIAANTRK
Ga0335070_106210141	3300032829	Soil	MWAMALPVACLIVIALLAIYVPTIYIRKTNKVLAVLEQIATNTRK
Ga0335081_100260674	3300032892	Soil	MYLAVVGTCVVVIALLAIYVPTIYIRKTNNVLRLLEQIAANTRK
Ga0335081_101224873	3300032892	Soil	MYWLSFVIGSCLVVTALLAIYVPTVYIRKTNVMIHLLEQIAANGHK
Ga0335069_120569592	3300032893	Soil	MYWSSLVVGVCLAVIALLAIYTPTIYIRKTNAMIKLLEQIAANTRK
Ga0335069_127021821	3300032893	Soil	MYWPSLIVGVCLVVIALIALYVPTVYIRKTNAMIKLLEQIAANTRK
Ga0316628_1040609451	3300033513	Soil	SFALTITGIVVIALLAIYVPTIYIRKTNKMLKLLEQIEANTRK
Ga0370484_0138741_443_598	3300034125	Untreated Peat Soil	MIGGIMTPSILVLSASLIVVALLAIYVPTVYIRKTNKITHLLEQIEVNTRK
Ga0370515_0082152_182_328	3300034163	Untreated Peat Soil	MVMYWCIVVPAACLIVIALLALYVPTIYIRKTNKLIHLLEEIVANTRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066707

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences