Metagenome / Metatranscriptome Family F066110

Basic Information
Family ID	F066110
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	105 residues
Representative Sequence	MTDPTLDGLHGRLERLEREVTWWRRAGIAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDDSDRTRLSLTDRDNGTTADLTVVPGQS
Number of Associated Samples	116
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.21 %
% of genes near scaffold ends (potentially truncated)	96.85 %
% of genes from short scaffolds (< 2000 bps)	86.61 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (58.268 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.598 % of family members)
Environment Ontology (ENVO)	Unclassified (40.157 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.819 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 38.38% β-sheet: 30.30% Coil/Unstructured: 31.31%
Feature Viewer

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Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF03480	DctP	52.76
PF06808	DctM	4.72
PF04290	DctQ	3.94
PF02146	SIR2	2.36
PF08240	ADH_N	0.79
PF10099	RskA	0.79
PF08359	TetR_C_4	0.79
PF00293	NUDIX	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG0846	NAD-dependent protein deacetylase, SIR2 family	Posttranslational modification, protein turnover, chaperones [O]	2.36
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	0.79

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.27 %
Unclassified	root	N/A	41.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.27 %
Unclassified	root	N/A	41.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.27 %
Unclassified	root	N/A	41.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.51 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	4.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	4.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.57 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	4.72 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.57 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	3.94 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.79 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.79 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Candidatus Rokubacteria bacterium 13_1_40CM_4_69_5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_4_69_5	0.79 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.79 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Candidatus Rokubacteria bacterium 13_1_40CM_4_69_5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_4_69_5	0.79 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Stigmatella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Candidatus Rokubacteria bacterium 13_1_40CM_4_69_5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_4_69_5	0.79 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Stigmatella aurantiaca	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Candidatus Rokubacteria bacterium 13_1_40CM_4_69_5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_4_69_5	0.79 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100423417	All Organisms → cellular organisms → Bacteria → Proteobacteria	1908	Open in IMG/M
3300000953\|JGI11615J12901_10202973	Not Available	626	Open in IMG/M
3300001139\|JGI10220J13317_10646635	Not Available	788	Open in IMG/M
3300002121\|C687J26615_10068445	Not Available	884	Open in IMG/M
3300003502\|JGI26143J51219_1001642	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300004058\|Ga0055498_10123942	Not Available	544	Open in IMG/M
3300004281\|Ga0066397_10028689	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300004479\|Ga0062595_101138646	Not Available	686	Open in IMG/M
3300005293\|Ga0065715_10098759	All Organisms → cellular organisms → Bacteria	3502	Open in IMG/M
3300005332\|Ga0066388_102828100	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300005338\|Ga0068868_101581847	Not Available	615	Open in IMG/M
3300005353\|Ga0070669_100900933	Not Available	755	Open in IMG/M
3300005438\|Ga0070701_11150876	Not Available	548	Open in IMG/M
3300005445\|Ga0070708_100680826	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300005467\|Ga0070706_100786982	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300005468\|Ga0070707_100270374	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300005471\|Ga0070698_101643825	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	594	Open in IMG/M
3300005536\|Ga0070697_100486610	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300005536\|Ga0070697_100847879	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300005536\|Ga0070697_101111574	Not Available	703	Open in IMG/M
3300005549\|Ga0070704_100819063	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300005563\|Ga0068855_101874202	Not Available	608	Open in IMG/M
3300005578\|Ga0068854_100209180	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300005888\|Ga0075289_1027568	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300006041\|Ga0075023_100113222	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300006172\|Ga0075018_10066587	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300006847\|Ga0075431_100666361	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300006871\|Ga0075434_100850858	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300006880\|Ga0075429_100795855	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300007076\|Ga0075435_100608786	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300009038\|Ga0099829_10105359	All Organisms → cellular organisms → Bacteria	2199	Open in IMG/M
3300009090\|Ga0099827_10461231	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300009147\|Ga0114129_11525165	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300009148\|Ga0105243_10141346	All Organisms → cellular organisms → Bacteria	2054	Open in IMG/M
3300009166\|Ga0105100_10378455	Not Available	855	Open in IMG/M
3300009176\|Ga0105242_11553819	Not Available	694	Open in IMG/M
3300009553\|Ga0105249_10630313	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300009792\|Ga0126374_10860301	Not Available	699	Open in IMG/M
3300009814\|Ga0105082_1012125	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1234	Open in IMG/M
3300010371\|Ga0134125_10002573	All Organisms → cellular organisms → Bacteria	21414	Open in IMG/M
3300010375\|Ga0105239_10963452	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300011270\|Ga0137391_11083088	Not Available	649	Open in IMG/M
3300011427\|Ga0137448_1128658	Not Available	696	Open in IMG/M
3300011443\|Ga0137457_1043400	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
3300012040\|Ga0137461_1008074	All Organisms → cellular organisms → Bacteria	2399	Open in IMG/M
3300012361\|Ga0137360_10784466	Not Available	820	Open in IMG/M
3300012906\|Ga0157295_10309929	Not Available	555	Open in IMG/M
3300012927\|Ga0137416_10183135	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300012930\|Ga0137407_10068044	All Organisms → cellular organisms → Bacteria	2956	Open in IMG/M
3300012955\|Ga0164298_11223925	Not Available	570	Open in IMG/M
3300012957\|Ga0164303_10778415	Not Available	655	Open in IMG/M
3300012961\|Ga0164302_10136696	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300012989\|Ga0164305_11869801	Not Available	544	Open in IMG/M
3300014326\|Ga0157380_10242536	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300014497\|Ga0182008_10399567	Not Available	738	Open in IMG/M
3300014745\|Ga0157377_10721282	Not Available	726	Open in IMG/M
3300015256\|Ga0180073_1077920	Not Available	702	Open in IMG/M
3300015371\|Ga0132258_10539268	All Organisms → cellular organisms → Bacteria	2923	Open in IMG/M
3300015372\|Ga0132256_100718434	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300015372\|Ga0132256_102919899	Not Available	575	Open in IMG/M
3300015373\|Ga0132257_102030481	Not Available	742	Open in IMG/M
3300015373\|Ga0132257_102731964	Not Available	643	Open in IMG/M
3300017974\|Ga0187777_10185698	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300018028\|Ga0184608_10270589	Not Available	747	Open in IMG/M
3300018422\|Ga0190265_10665350	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300018422\|Ga0190265_10925070	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300019361\|Ga0173482_10682303	Not Available	528	Open in IMG/M
3300019487\|Ga0187893_10618432	Not Available	683	Open in IMG/M
3300019882\|Ga0193713_1162828	Not Available	591	Open in IMG/M
3300020001\|Ga0193731_1086240	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300020009\|Ga0193740_1020705	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300020070\|Ga0206356_10552866	Not Available	633	Open in IMG/M
3300020082\|Ga0206353_10187514	Not Available	717	Open in IMG/M
3300020150\|Ga0187768_1023411	All Organisms → cellular organisms → Bacteria	1325	Open in IMG/M
3300021078\|Ga0210381_10076539	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300021170\|Ga0210400_10652930	Not Available	866	Open in IMG/M
3300021418\|Ga0193695_1117844	Not Available	557	Open in IMG/M
3300025899\|Ga0207642_10861389	Not Available	579	Open in IMG/M
3300025910\|Ga0207684_11001258	Not Available	699	Open in IMG/M
3300025915\|Ga0207693_10383636	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300025922\|Ga0207646_10583233	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300025922\|Ga0207646_10664173	Not Available	933	Open in IMG/M
3300025926\|Ga0207659_10646969	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300025930\|Ga0207701_11318386	Not Available	591	Open in IMG/M
3300025933\|Ga0207706_10016122	All Organisms → cellular organisms → Bacteria → Proteobacteria	6751	Open in IMG/M
3300025933\|Ga0207706_10077472	All Organisms → cellular organisms → Bacteria	2923	Open in IMG/M
3300025935\|Ga0207709_10084477	All Organisms → cellular organisms → Bacteria	2055	Open in IMG/M
3300025935\|Ga0207709_11282900	Not Available	605	Open in IMG/M
3300025945\|Ga0207679_10005874	All Organisms → cellular organisms → Bacteria	7713	Open in IMG/M
3300025949\|Ga0207667_11651844	Not Available	608	Open in IMG/M
3300025981\|Ga0207640_10354470	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300025999\|Ga0208417_100307	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300026035\|Ga0207703_10157562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1986	Open in IMG/M
3300026075\|Ga0207708_10849761	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	788	Open in IMG/M
3300026102\|Ga0208914_1025167	Not Available	693	Open in IMG/M
3300026358\|Ga0257166_1000995	All Organisms → cellular organisms → Bacteria	2482	Open in IMG/M
3300026360\|Ga0257173_1037586	Not Available	660	Open in IMG/M
3300026376\|Ga0257167_1009598	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300026469\|Ga0257169_1032337	Not Available	784	Open in IMG/M
3300026475\|Ga0257147_1007039	All Organisms → cellular organisms → Bacteria	1427	Open in IMG/M
3300026494\|Ga0257159_1000535	All Organisms → cellular organisms → Bacteria	4374	Open in IMG/M
3300027324\|Ga0209845_1022438	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1028	Open in IMG/M
3300027384\|Ga0209854_1063072	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	647	Open in IMG/M
3300027471\|Ga0209995_1000448	All Organisms → cellular organisms → Bacteria → Proteobacteria	6334	Open in IMG/M
3300027646\|Ga0209466_1039238	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300027787\|Ga0209074_10464986	Not Available	543	Open in IMG/M
3300027909\|Ga0209382_11443730	Not Available	689	Open in IMG/M
3300028536\|Ga0137415_11066961	Not Available	620	Open in IMG/M
3300028673\|Ga0257175_1000729	All Organisms → cellular organisms → Bacteria	3117	Open in IMG/M
3300028673\|Ga0257175_1017735	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300028715\|Ga0307313_10027191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1594	Open in IMG/M
3300028792\|Ga0307504_10314842	Not Available	593	Open in IMG/M
3300028793\|Ga0307299_10326496	Not Available	576	Open in IMG/M
3300028906\|Ga0308309_11208861	Not Available	651	Open in IMG/M
3300031716\|Ga0310813_10626793	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300031720\|Ga0307469_11820716	Not Available	588	Open in IMG/M
3300031820\|Ga0307473_10055360	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1905	Open in IMG/M
3300032180\|Ga0307471_101397480	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300032205\|Ga0307472_100063187	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2377	Open in IMG/M
3300033480\|Ga0316620_10589863	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300033513\|Ga0316628_100427699	All Organisms → cellular organisms → Bacteria	1691	Open in IMG/M
3300033513\|Ga0316628_101127260	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300034155\|Ga0370498_070114	Not Available	794	Open in IMG/M
3300034817\|Ga0373948_0041722	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_4_69_5	962	Open in IMG/M
3300034817\|Ga0373948_0081091	Not Available	740	Open in IMG/M
3300034820\|Ga0373959_0066057	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.08%
Host-Associated	Host-Associated	29.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.20%
Plants	Host-Associated → Plants	29.92%
Aquatic	Environmental → Aquatic	7.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.24%
Sediment	Environmental → Aquatic → Sediment	5.51%
Freshwater	Environmental → Aquatic → Freshwater	1.57%
Marine	Environmental → Aquatic → Marine	0.79%
Cave	Environmental → Terrestrial → Cave	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.22%
Loam	Environmental → Terrestrial → Soil → Loam	15.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.09%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.15%
Sand	Environmental → Terrestrial → Soil → Sand	2.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.57%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.02%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.15%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.36%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.36%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.57%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.57%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.30%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.72%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.15%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.15%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.15%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.15%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.36%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.36%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.36%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	2.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.36%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.57%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.57%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.57%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.57%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.79%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.79%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.79%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.79%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental	Open in IMG/M
3300003502	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM	Host-Associated	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015256	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020009	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s1	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025999	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_201 (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026102	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027471	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1004234171	3300000559	Soil	MTESTLAALHGRLNRLEREVTWWRRLGIAALACAGLLGAVAATVTTNPDEVKTRRLIITDGDGRARAMFTVDENDRTRLTMNDRDSTTSADLTVSPGQSAALS
JGI11615J12901_102029731	3300000953	Soil	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQLAAAGDNGQLSV
JGI10220J13317_106466351	3300001139	Soil	MTESTLAALHGRLSRLEREVTWWRRLGIAALAGAGLLGAVAATVTTNPDEVKTRRLIITDGDGRARAMFTVDESDRTRLTMNDRDSTTSADLTVSPGQSAALSVSRAGAQAQLAATGDNGQVSV
C687J26615_100684452	3300002121	Soil	MKEPSLDGLHARLDRLEREVGWWRRVGVAALACAGLLGAVAATVTTNPDEVKTRRLVITDVDGRGRAVLTVDESDRTRLTLADRDGA
JGI26143J51219_10016421	3300003502	Arabidopsis Thaliana Rhizosphere	MTESTLAALHGRLSRLEREVTWWRRLGIAALAGAGLLGAVAATVTTNPDEVKTRRLIITDGDGRARAMFTVDESDRTRLTMNDRDSTT
Ga0055498_101239421	3300004058	Natural And Restored Wetlands	MREPSLDGLHARLDRLEREVGWWRRVGVAAVAGVGLFGAIAATVTTNPDEVKTRRLVITDGEGRGRALFTVDDSDRTRLTLTDRDGGTTADLTVTPGQSASLSLGRADTRAQLAAAGETGQLSVAARGQRGWLVA
Ga0066397_100286891	3300004281	Tropical Forest Soil	MESTLAALHGRLSRLEREVTWWRRLGIAALACAGLLGAVAATVTTNPDEVKTRRLVITDGDGRPRAMFTVDDNDRTRLTMNDRDGTTNADLTVSPGQSAALSVSRAGAQAQ
Ga0062595_1011386461	3300004479	Soil	MREPSLDGLHARLDRLEREVGWWRRVGVAALAGVGLVGVVAATVTTNPDEVKTRRLVITDGEGRGRAIFTVDESDRTRL
Ga0065715_100987591	3300005293	Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLS
Ga0066388_1028281002	3300005332	Tropical Forest Soil	MKERSLDGLHARLERLERELAWWRRVGVVALAAAGLFGAVAATVTTTPDEVKTRRLVITDGDGRGRAVLTVDDKDRTRLSLTDHDGGVSADVTVTPGQSAVLSIG
Ga0068868_1015818472	3300005338	Miscanthus Rhizosphere	MREPSLDGLHARLDRLEREVGWWRRVGVAALAGVGLVGVVAATVTTNPDEVKTRRLVITDGEGRGRAIFTVDESDRTRLSLTDRDGATSADLTVTPGQSAALSVGRAGAQAQL
Ga0070669_1009009332	3300005353	Switchgrass Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRG
Ga0070701_111508761	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLI
Ga0070708_1006808263	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTEPTLDGLHGRLERLEREVTWWRRAGIAALTCAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDDGDR
Ga0070706_1007869822	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLAD
Ga0070707_1002703743	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTDPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTSPDEVKTRRLVITDGDGRARAVFTVDDSDRTRLSLTDRDNGTTADLTVVPGQSAALSLARAGAQAQLAATGDNGQLSVGTRGQRGWLVAAPS
Ga0070698_1016438251	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTEPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTNPDEVKTRRLVITDGDGRARALFTVDDSDRTRLSLTDRDNGTTADLTVVPGQSAALSLARAGAQAQLAT
Ga0070697_1004866101	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTA
Ga0070697_1008478792	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTEPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTNPDEVKTRRLVITDGDGRARALFTVDDSDRTRLSLTDRDNGTTADLTVVPGQSAALSLARAG
Ga0070697_1011115741	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTEPTLDGLHGRLERLEREVTWWRRAGIAALTCAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDD
Ga0070704_1008190631	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTEPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTNPDEVKTRRLVITDGDGRARALFTVDDSVRTRLSLTDRDNGTTADLTVVPG
Ga0068855_1018742022	3300005563	Corn Rhizosphere	MREPSLDGLHARLDRLEREVGWWRRVGVAALAGVGLVGVVAATVTTNPDEVKTRRLVITDGEGRGRAIFTGDESDRTRLSLTDRDGATSADLTVTPGQS
Ga0068854_1002091802	3300005578	Corn Rhizosphere	MREPSLDGLHARLDRLEREVGWWRRVGVAALAGVGLVGVVAATVTTNPDEVKTRRLVITDGEGRGRAIFTVDESDRTRLSLTDRDGATSADLTVTPGQSAA
Ga0075289_10275681	3300005888	Rice Paddy Soil	MSEPTLDRLHGRLERLERELAWWRRAGIAALACAGLLGAVAATVGTNPDEVKTRRLVITDGDGRTRAVFTVDESDRTRLSLTDRDNG
Ga0075023_1001132222	3300006041	Watersheds	MMEPTLDRLHGRLERLEREVAWWRRAGIAALACAGLLCADAATVSTNPDEVKTRRLVITDGDGRARAVFTVDDSDRTRLSLTDRDNGTTADLTVV
Ga0075018_100665873	3300006172	Watersheds	MMEPTLDRLHGRLERLEREVAWWRRAGIAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDD
Ga0075431_1006663612	3300006847	Populus Rhizosphere	MIDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLAD
Ga0075434_1008508582	3300006871	Populus Rhizosphere	MTEPTLDGLHGRLERLEREVTWWRRVGIAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFMVDDGDRTRLSLTDRDNGTTADLTIIPGQSAALSLSLARAGAQAQLAATGDNGQLSVGTRGQRGWLVA
Ga0075429_1007958552	3300006880	Populus Rhizosphere	MIDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADIT
Ga0075435_1006087862	3300007076	Populus Rhizosphere	MTEPTLDGLHGRLERLEREVTWWRRVGIAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRPRAVFMVDDGDRTRLSLTDRDNGTTADLTIIPGQSAALSLSLARAGAQAQLAATGDNGQLSVGTRGQRGWLVAAPTGSSL
Ga0099829_101053595	3300009038	Vadose Zone Soil	MTDPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTSPDEVKTRRLVITDGDGRARAVFTVDDSDRTRLSLTDRDNGTTADLTVVPGQSAALSLARAGA
Ga0099827_104612312	3300009090	Vadose Zone Soil	MRETSLDGLHARLERLEREVGWWRRVGVAALASVGLFGAIAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDEGDRTRLSLTDRDGATTADLTVTPGQSAALSVGRAGAQAQLAAVGETGQISVAARGQRGWLVAAPTGSS
Ga0114129_115251651	3300009147	Populus Rhizosphere	MIDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATT
Ga0105243_101413464	3300009148	Miscanthus Rhizosphere	MDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIP
Ga0105100_103784552	3300009166	Freshwater Sediment	LERLEREIGWWRRVGVAALAGVGLFGAVAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDESDRTRLSLTDRDGTTSADLTVTPGQSAALSVGRAGARAQLAAAGESGQLAVAARGPRGWHVADPRG
Ga0105242_115538192	3300009176	Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQLAAAGDNGQLSVGTRGQRGWLVAA
Ga0105249_106303132	3300009553	Switchgrass Rhizosphere	MREPSLDGLHARLDRLEREVGWWRRVGVAALAGVGLVGVVAATVTTNPDEVKTRRLVITDGEGRGRAIFTVD
Ga0126374_108603011	3300009792	Tropical Forest Soil	MREPSLDGLHARLERLERELAWWRRVGVVALAAAGLFGAVAATVTTTPDEVKTRRLVITDGDGRGRALLTVDDNDRTRLSLTDHDGGVSADVTVTPGQSAVLSIGRGGAQAQVAATGDSGQISVG
Ga0105082_10121251	3300009814	Groundwater Sand	MKEPFLEGLHARLERLERELAWWRRIGIAALACAGLFGAVAATVSTNPDEVKTRRLVITDGDGRGRAVFTVDENDRTRLSLADRDGTTTADLTVIPGQSAALSVSR
Ga0134125_100025731	3300010371	Terrestrial Soil	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQLAAAGDNG
Ga0105239_109634522	3300010375	Corn Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQLAAA
Ga0137391_110830881	3300011270	Vadose Zone Soil	MTEPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTNPDEVKTRRLVITDGDGRARALFTVDDSDRTRLSLTDRDNGTTADLTVVPGQSAALSLARAGAQAQLATTGDNGQLSVSTRGQRGWLV
Ga0137448_11286581	3300011427	Soil	MREPSLDGLHARLERLERQVAWWRRVGVAALAGVGLFGAIAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDASDRTRLSLADRDGATTADLTVTPGQSAALSVSRAGAQAQLAAAGDTG
Ga0137457_10434001	3300011443	Soil	MDRRSAMMEPSLDGLHARLERLERQVAWWRRVGVAALAGLGLVGAVAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDESDRTRLSLA
Ga0137461_10080741	3300012040	Soil	MREPSLDGLHARLERLERQVAWWRRVGVAALAGLGLVGAVAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDESDRTRLSLADRDGATTADLTVTPGQS
Ga0137362_102417791	3300012205	Vadose Zone Soil	MTDPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTSPDEVKTRRLVITDGDGRARAVFT
Ga0137360_107844662	3300012361	Vadose Zone Soil	MTDPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTSPDEVKTRRLVITDGDGRVRAVFTVDDSDRTRLSLTDRDNGTTADLTVVP
Ga0157295_103099292	3300012906	Soil	MTESTLAALHGRLSRLEREVTWWRRLGIAALAGAGLLGAVAATVTTNPDEVKTRRLIITDGDGRARAMFTVDESDRTRLTMNDRDSTTSADLTVSPGQSAALSVS
Ga0137416_101831353	3300012927	Vadose Zone Soil	MREPLLDGLHARLERLEREVGWWRRVGVAALAGVGLFGAIAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDESDRTRLSLTDRDGATTADLTVIPG*
Ga0137407_100680441	3300012930	Vadose Zone Soil	MREPLLDGLHARLERLEREVGWWRRVGVAALAGVGLFGAIAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDESDRTRLSLTD
Ga0164298_112239251	3300012955	Soil	MIDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQLAAAG
Ga0164303_107784151	3300012957	Soil	MIDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPG
Ga0164302_101366961	3300012961	Soil	MIDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSA
Ga0164305_118698011	3300012989	Soil	MIDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIP
Ga0157380_102425363	3300014326	Switchgrass Rhizosphere	MDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQL
Ga0182008_103995672	3300014497	Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDN
Ga0157377_107212822	3300014745	Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQ
Ga0180073_10779201	3300015256	Soil	MREPSLDGLHTRLERLERQVAWWRRVGLAALAGLGLVGAVAATVTTNPDEVKTRRLVITDGEGRGRAVFTVDESDRTRLSLADRDGATTADLTVTPGQSAALSVSRAGAQAQLAAAGDTGQLSVGAR
Ga0132258_105392684	3300015371	Arabidopsis Rhizosphere	MTEPTLDRLHGRLERLERELAWWRRAGVAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDESDRTRLSLTDRDNGSTADLTVVPGQSAALSVTRGGVQAQLAANGDNGQLS
Ga0132256_1007184341	3300015372	Arabidopsis Rhizosphere	MTEPTLDRLHGRLERLERELAWWRRAGVAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDESDRTRLSLTDRDNGSTADLTVVP
Ga0132256_1029198991	3300015372	Arabidopsis Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQLAA
Ga0132257_1020304812	3300015373	Arabidopsis Rhizosphere	MTESTLAALHGRLSRLERDVTWWRRLGIAALAGAGLLGAVAATVTTNPDEVKTRRLIITDGDGRARAMFTVDENDRTRLTMNDRDNATRADLTVSPGQSAALSVSRAGAQAQLAATGDNGQVSVGTAGQQGWLVAAPTGAGK
Ga0132257_1027319642	3300015373	Arabidopsis Rhizosphere	MTEPTLDRLHGRLERLERELAWWRRAGVAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDESDR
Ga0187777_101856981	3300017974	Tropical Peatland	MSEPSLDRLHARLDRLEREVRRWRRAGIAALAVAGLLGAVAATVTTNPDEVKTRRLVITDGDGRGRAVFTVDDNDRTRLSLTDRDGATSADLTVIPGQSAALSVIRGGAQAQIAAA
Ga0184608_102705891	3300018028	Groundwater Sediment	MREPSLDGLHARLERLEREVGWWRRVGVAALASVGLFGAIAATVTTNPDEVKTRRLVVTDGEGRGRAVLTVDENDRTRLSLTDRDGATTADLT
Ga0190265_106653502	3300018422	Soil	MRESSLDGLHARLERLEREIGWWRRVGVAALAGVGLFGAIAATVTTNPDEVKTRRLVITDGEGRGRALFTVDESDRTRLTLSDRDATTTADLTVTPGQSAALSLGRAGAQAQLAAAGETGQVSVTARGQRGW
Ga0190265_109250702	3300018422	Soil	MREPSLDRLHARLERLEREVGWWRRVGVAALAGMGLFGAIAATVTTNPDEVKTRRLVITDGEGRGRAIFTVDE
Ga0173482_106823031	3300019361	Soil	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQS
Ga0187893_106184321	3300019487	Microbial Mat On Rocks	MREPSFDGLHTRLERLERELGWWRRVGGALLAGLGLFGAVAATVTTNPDEVRTRRLVITDGEGRSRGVFTVDESGRTHLSLADRGSTTTATLTVTPGQSAALSVT
Ga0193713_11628281	3300019882	Soil	MREPSLDGLHARLQRLEREVGWWRRVGVAALASVGLFGAIAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDESDRTRLSLTDRDGATTADLTVIPGQSAALSVGRGGAQAQLAAVGETGQISVAAR
Ga0193731_10862402	3300020001	Soil	MREPSLDGLHARLERLEREVGWWRRVGVAALASVGLFGAIAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDESD
Ga0193740_10207052	3300020009	Soil	MREPSLDGLHARLERLERQVAWWRRVGVAALAGLGLVGAVAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDASDRTRLSLADRDGATTADLTVTPGQSAALSVSRAGAQAQLAAAGDTGQL
Ga0206356_105528662	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQLAAAGDNGQLSVGTRG
Ga0206353_101875142	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDAS
Ga0187768_10234112	3300020150	Tropical Peatland	MSEPSLDRLHARLDRLEREVRRWRRAGIAALAVAGLLGAVAATVTTNPDEVKTRRLVITDGDGRGRAVFTVDDNDRTRLSLTDRDGATSADLTVIPGQSAALSVIRGGAQAQIAAAGDNGQV
Ga0210381_100765392	3300021078	Groundwater Sediment	MREPSLDGLHARLERLEREVGWWRRVGVAALASVGLFGAIAATVTTNPDEVKTRRLVVTDGEGRGRAVLTVDESDRTRLSLTDRDGATTADLTVIPGQSAALS
Ga0210400_106529301	3300021170	Soil	MSEPSLDRLHTRLDRLERELRWWRRAGIAALAAAGLLGAVAATVTTNPDEVKTRRLVITDGDGRGRAVFTVDESDRTRLSLVDRDGTTSADLSVIPGQSAA
Ga0193695_11178441	3300021418	Soil	MTDPTLDGLHGRLERLEREVTWWRRAGIAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDDSDRTRLSLTDRDNGTTADLTVVPGQS
Ga0207642_108613891	3300025899	Miscanthus Rhizosphere	MREPSLDGLHARLDRLEREVGWWRRVGVAALAGVGLVGVVAATVTTNPDEVKTRRLVITDGEGRGRAIFTVDESDRTRLSLTDRDGATSADLTVTPGQSAALSVGRAGAQAQLAAVGEAGQLSVAARGQRGWLVASP
Ga0207684_110012582	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTEPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTNPDEVKTRRLVITDGDGRARALFTVDDSDRTRLSLTDRDNGTTADLTVVPGQSAALSLARAGAQ
Ga0207693_103836361	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTESTLDGLHGRLERLEREVTWWRRAGIAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDDSDRTRLSLTDRDNGT
Ga0207646_105832332	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTEPTLDGLHGRLERLEREVTWWRRAGIAALTCAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDDG
Ga0207646_106641732	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTDPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTSPDEVKTRRLVITDGDGRARAVFTVDDSDRTRLSLTDRDNGTTADLTVVPGQSAALSLARAGAQAQLAATGDNGQLSVGTRGQRGWLVAAPSG
Ga0207659_106469692	3300025926	Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGT
Ga0207701_113183862	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIKELAAV
Ga0207706_100161228	3300025933	Corn Rhizosphere	MTESTLAALHGRLSRLEREVTWWRRLGIAALAGAGLLGAVAATVTTNPDEVKTRRLIITDGDGRARAMFTVDESDRTRLTMNDRDSTTSADLTVSPGQSAALSVSRAGAQAQLAATGDNG
Ga0207706_100774721	3300025933	Corn Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQL
Ga0207709_100844771	3300025935	Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIP
Ga0207709_112829001	3300025935	Miscanthus Rhizosphere	MREPSLDGLHARLDRLEREVGWWRRVGVAALAGVGLVGVVAATVTTNPDEVKTRRLVITDGEGRGRAIFTVDESDRTRLSLTDRDGATSADLTVTPGQSAALSVGRAGAQAQLAAVGEAGQLSVTARGQRGWLVASP
Ga0207679_100058741	3300025945	Corn Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQLAAAGDNGQL
Ga0207667_116518442	3300025949	Corn Rhizosphere	MREPSLDGLHARLDRLEREVGWWRRVGVAALAGVGLVGVVAATVTTNPDEVKTRRLVITDGEGRGRAIFTVDESDRTRLSLTDRDGATSADLTVTPGQS
Ga0207640_103544701	3300025981	Corn Rhizosphere	MREPSLDGLHARLDRLEREVGWWRRVGVAALAGVGLVGVVAATVTTNPDEVKTRRLVITDGEGRGRAIFTVDESDRTRLSLTDRDGATSADLTVTPGQSAALSVGRAGAQAQLAAVGEAGQLSV
Ga0208417_1003071	3300025999	Rice Paddy Soil	MTEPSLDRLHRRLEHLERELAWWRRVGFVALACAGLFGAVAATVTTTPDEVKTRRLVITDADGRGRAVFTVDERDRTRLSLTDRDGTTTADVTVIPGQSAALSVAR
Ga0207703_101575623	3300026035	Switchgrass Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQLAAAGDNGQLSVGTRGQRGWLMAAPGGSSVG
Ga0207708_108497612	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADRDNATTADITVIPGQSAALSLIRGTAQAQLAAAGDNGQLSVGT
Ga0208914_10251672	3300026102	Natural And Restored Wetlands	MREPSLDGLHARLARLERQVAWWRRVGIAALAGLGLVGAVAATVTTNPDEVKTRRLVITDGEGRGRAVFTVDESDRTRLSLTDRDATTTADLTVTPGQSAALSVGRAGVRAQLTAAGDAGQVSVAAPGQRGWLVAARTGS
Ga0257166_10009954	3300026358	Soil	MTEPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTNPDEVKTRRLVITDGDGRARALFTVDDSDRTRLSLTDRDNGTTADLTVVPGQSAALSLARAGAQAQLATTGDNGQLSV
Ga0257173_10375861	3300026360	Soil	MREPSLDGLHARLERLERQVAWWRRVGVAALAGLGLVGAVAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDASDRTRLSLADRDGATTADLTVTPGQ
Ga0257167_10095982	3300026376	Soil	MREPSLDGLHARLERLERQVAWWRRVGVAALAGLGLVGAVAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDESDRTRLSLTDRDGATTA
Ga0257169_10323372	3300026469	Soil	MTEPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTNPDEVKTRRLVITDGDGRARALFTVDDSDRTRLSLTDRDNGTTADLTVVPGQ
Ga0257147_10070392	3300026475	Soil	MTEPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTNPDEVKTRRLVITDGDGRARALFTVDDSDRTRLSLTDRDN
Ga0257159_10005357	3300026494	Soil	MTEPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTNPDEVKTRRLVITDGDGRARALFTVDDSDRTRLSLTDRDNGTTADLTVVPGQSAALSLARAGAQAQL
Ga0209845_10224383	3300027324	Groundwater Sand	MKEPFIVGLHARLERLERELAWWRRIGVAALACAGLFGAVAATVSTNPDEVKTRRLVITDGDGRGRAVFTVDENDRTRLSLADRD
Ga0209854_10630722	3300027384	Groundwater Sand	MKEPFLEGLHARLERLERELAWWRRIGVAALACAGLFGAVAATVSTNPDEVKTRRLVITDGDGRGRAVFTVDESDRTR
Ga0209995_10004488	3300027471	Arabidopsis Thaliana Rhizosphere	MTESTLAALHGRLSRLEREVTWWRRLGIAALAGAGLLGAVAATVTTNPDEVKTRRLIITDGDGRARAMFTVDESDRTRLTMNDRDSTTSADLTVSPGQSAALSVSRAGAQAQLAATGDNGQVSVGTRGQQGWLVAAGRPIRVAIGRSGILANK
Ga0209466_10392382	3300027646	Tropical Forest Soil	MMESTLAALHGRLSRLEREVTWWRRLGIAALACAGLLGAVAATVTTNPDEVKTRRLVITDGDGRPRAMFTVDDNDRTRLTMNDRDGTTNADLTVSPGQSAALSVSRAGAQAQLAATGD
Ga0209074_104649861	3300027787	Agricultural Soil	MRDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIVDRDGRMRAVLTVDESDRTRLSLADRDNTATADITVIPGQSSALSLTRGPAQAQLATAGDN
Ga0209382_114437301	3300027909	Populus Rhizosphere	MSEPSLDGLHARLERLEHQVAWWRRVGVAALAGLGLFGAVAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDESDRTRLS
Ga0137415_110669612	3300028536	Vadose Zone Soil	MREPLLDGLHARLERLEREVGWWRRVGVAALAGVGLFGAIAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDESDRTRLSLTDRDGATTADLTVIPGQSAALSVGRGGAQAQLAA
Ga0257175_10007291	3300028673	Soil	MREPSLDGLHARLERLERQVAWWRRVGVAALAGLGLVGAVAATVTTNPDEVKTRRLVITDGEGRGRAVLTVDESDRTRLSLADRDGATTADLTVTPGQSAALSVSRAGAQAQLA
Ga0257175_10177351	3300028673	Soil	MTEPTLDGLHGRLERLEREVTWWRRAGIAALACVGLLGAVAATVSTSPDEVKTRRLVITDGDGRARAVFTVDDSDRTRLSLTD
Ga0307313_100271911	3300028715	Soil	MREPSLDGLHARLERLEREVGWWRRVGVAALASVGLFGAIAATVTTNPDEVKTRRLVVTDGEGRGRAVLTVDESDRTRLS
Ga0307504_103148422	3300028792	Soil	MREPSLDGLHGRLERLERELAWWRRIGVAALACAGLFGAVAATVTTNPDEVKTRRLVITDGDGRGRAIFTVDERDRTRLSLTDRDGATSADL
Ga0307299_103264961	3300028793	Soil	MREPSLDGLHARLERLEREVGWWRRVGVAALASVGLFGAIAATVTTNPDEVKTRRLVVTDGEGRGRAVLTVDESDRTRLSLTDRDGATTADLTVIPGQSAALSVGRGAAQAQLAA
Ga0308309_112088611	3300028906	Soil	MSEPTLDRLHTRLDRLERELRWWRRAGIAALAAAGLLGAVAATVTTNPDEVKTRRLVITDGDGRGRAVFTVDESDRTRLSLVDRDGTTSADLTVIPGQSAALSVVRAGAQAQLAAAGDNGQLSV
Ga0310813_106267932	3300031716	Soil	MTEPTLDRLHGRLERLERELAWWRRAGVAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDE
Ga0307469_118207162	3300031720	Hardwood Forest Soil	MTESTLDGLHGRLERLEREVTWWRRAGIAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRPRAVFMVDDGDRTRLSLTDRDNATTADL
Ga0307473_100553601	3300031820	Hardwood Forest Soil	MKEPSTVGLHVRLERLERELAWWRRIGVAALACAGLFGAVAATVSTNPDEMKTRRLVITDGDGRGRAVFTVDENDRTRLSLADRDGTTTADLTVIPGQSAALSVGRAGAQAQLAAAGDNGQLSVEARGQRGWVVAGPSGASLG
Ga0307471_1013974801	3300032180	Hardwood Forest Soil	MTESTLAALHGRLSRLEREVTWWRRLGIAALACAGLLGAVAATVTTNPDEVKTRRLIITDGDGRARAMFTVDENDRTRLTMNDRDSTTS
Ga0307472_1000631871	3300032205	Hardwood Forest Soil	MKEPSTVGLHVRLERLERELAWWRRIGVAALACAGLFGAVAATVSTNPDEMKTRRLVITDGDGRGRAVFTVDENDRTRLSLADRDGTTTADLTVIPGQSAALSVGRTGAQAQLAAAGDNGQLSVEARGQRGWVVAGP
Ga0316620_105898631	3300033480	Soil	MTEPTLDRLHGRLERLERELAWWRRAGIAALACAGLLGAVAATVSTSPDEVKTRRLVITDGDGRARALLTVDESDRTRLSLTDRDNGTTADLTVIPGQSAALSVTRAGARAQLAAT
Ga0316628_1004276993	3300033513	Soil	MTEPTLDRLHGRLERLERELAWWRRAGIAALACAGLLGAVAATVSTSPDEVKTRRLVITDGDGRARALLTV
Ga0316628_1011272601	3300033513	Soil	MTEPTLDRLHGRLERLERELAWWRRAGIAALACAGLLGAVAATVSTSPDEVKTRRLVITDGDGRTRAVFTVDESDRTRLSLTDRDNG
Ga0370498_070114_1_315	3300034155	Untreated Peat Soil	MREPSLDGLHARLERLEREVGWWRRVGVAALAGVGLFGAIAATVTTNPDEVKTRRLVITDGEGRGRAVFTVDESDRTRLSLTDRDGATTADLTVTPGQSAALSVS
Ga0373948_0041722_640_960	3300034817	Rhizosphere Soil	MTEPTLDGLHGRLERLEREVTWWRRAGIAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRARAVFTVDDSDRTRLSLTDRDNGTTADLTVVPGQSAALSLARA
Ga0373948_0081091_462_740	3300034817	Rhizosphere Soil	MSEPTLDRLHGRLERLERELAWWRRAGIAALACAGLLGAVAATVSTNPDEVKTRRLVITDGDGRTRAVFTVDESDRTRLSLTDRDNGATADLT
Ga0373959_0066057_3_254	3300034820	Rhizosphere Soil	MMDPALDPLHGRLERLERELAWWRRAGIALLAGVGLLGAVAATVSTNPDEVKTQRLVIIDRDGRTRAVFTVDASDRTRLSLADR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066110

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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