Metagenome / Metatranscriptome Family F065984

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065984
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	41 residues
Representative Sequence	TEFKSERIYDFHWSFDGKQLAMVRGHTDSDVVLIRDGQQ
Number of Associated Samples	109
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.79 %
% of genes near scaffold ends (potentially truncated)	96.06 %
% of genes from short scaffolds (< 2000 bps)	86.61 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.213 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.472 % of family members)
Environment Ontology (ENVO)	Unclassified (25.197 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.417 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 5.97% Coil/Unstructured: 94.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00313	CSD	37.80
PF10282	Lactonase	12.60
PF00578	AhpC-TSA	3.94
PF12867	DinB_2	3.15
PF13432	TPR_16	2.36
PF14257	DUF4349	1.57
PF12631	MnmE_helical	1.57
PF07722	Peptidase_C26	1.57
PF04397	LytTR	1.57
PF14520	HHH_5	0.79
PF06441	EHN	0.79
PF03551	PadR	0.79
PF01979	Amidohydro_1	0.79
PF04055	Radical_SAM	0.79
PF13180	PDZ_2	0.79
PF03951	Gln-synt_N	0.79
PF14329	DUF4386	0.79
PF00484	Pro_CA	0.79
PF02518	HATPase_c	0.79
PF12704	MacB_PCD	0.79
PF13932	GIDA_C	0.79
PF13442	Cytochrome_CBB3	0.79
PF12833	HTH_18	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG0174	Glutamine synthetase	Amino acid transport and metabolism [E]	0.79
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.79
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.79
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.79
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.79
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.21 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.21 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.21 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	74.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.79 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	20.47 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	13.39 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.47 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	12.60 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.79 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.47 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12.60 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.79 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.47 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3.94 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.79 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.79 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.47 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.79 %
Granulicella sibirica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella sibirica	0.79 %
Cupriavidus lacunae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus lacunae	0.79 %
Unclassified	root	N/A	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10069689	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	778	Open in IMG/M
3300002245\|JGIcombinedJ26739_100136031	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2320	Open in IMG/M
3300005176\|Ga0066679_10696284	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	659	Open in IMG/M
3300005434\|Ga0070709_11630551	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	526	Open in IMG/M
3300005591\|Ga0070761_10217390	All Organisms → cellular organisms → Bacteria → Acidobacteria	1136	Open in IMG/M
3300005602\|Ga0070762_10523649	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	779	Open in IMG/M
3300005712\|Ga0070764_10598813	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300005764\|Ga0066903_107030935	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	583	Open in IMG/M
3300006041\|Ga0075023_100310558	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300006059\|Ga0075017_100690495	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300006059\|Ga0075017_100816090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300006086\|Ga0075019_11112397	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	513	Open in IMG/M
3300006102\|Ga0075015_100362249	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M
3300006176\|Ga0070765_100022350	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4761	Open in IMG/M
3300006176\|Ga0070765_100209332	All Organisms → cellular organisms → Bacteria	1773	Open in IMG/M
3300006893\|Ga0073928_11048036	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300007265\|Ga0099794_10459545	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300007265\|Ga0099794_10752335	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300009137\|Ga0066709_103273014	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300009520\|Ga0116214_1408905	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300009524\|Ga0116225_1168180	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300009628\|Ga0116125_1040325	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1176	Open in IMG/M
3300009628\|Ga0116125_1162286	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300009635\|Ga0116117_1057819	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300009700\|Ga0116217_10915303	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300009839\|Ga0116223_10222679	All Organisms → cellular organisms → Bacteria → Acidobacteria	1146	Open in IMG/M
3300010046\|Ga0126384_10079893	All Organisms → cellular organisms → Bacteria	2352	Open in IMG/M
3300010048\|Ga0126373_11111867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	856	Open in IMG/M
3300010376\|Ga0126381_100423458	All Organisms → cellular organisms → Bacteria → Acidobacteria	1861	Open in IMG/M
3300010379\|Ga0136449_100069293	All Organisms → cellular organisms → Bacteria	7590	Open in IMG/M
3300010379\|Ga0136449_100124729	All Organisms → cellular organisms → Bacteria	5155	Open in IMG/M
3300010397\|Ga0134124_13087638	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300011269\|Ga0137392_10830263	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300011269\|Ga0137392_11491086	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300011270\|Ga0137391_10003450	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	11973	Open in IMG/M
3300012189\|Ga0137388_10880398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300012202\|Ga0137363_11250494	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300012925\|Ga0137419_10627395	All Organisms → cellular organisms → Bacteria → Acidobacteria	866	Open in IMG/M
3300012929\|Ga0137404_10726029	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300014199\|Ga0181535_10712918	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300014657\|Ga0181522_10887186	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300015264\|Ga0137403_10405755	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1242	Open in IMG/M
3300017822\|Ga0187802_10138266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	927	Open in IMG/M
3300017943\|Ga0187819_10297180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	939	Open in IMG/M
3300017972\|Ga0187781_10638702	All Organisms → cellular organisms → Bacteria → Acidobacteria	768	Open in IMG/M
3300017993\|Ga0187823_10383155	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300017995\|Ga0187816_10275162	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300018017\|Ga0187872_10444351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus lacunae	543	Open in IMG/M
3300018037\|Ga0187883_10522969	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella sibirica	612	Open in IMG/M
3300018042\|Ga0187871_10164005	All Organisms → cellular organisms → Bacteria → Acidobacteria	1252	Open in IMG/M
3300018042\|Ga0187871_10720557	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300018047\|Ga0187859_10636556	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300018085\|Ga0187772_10400785	All Organisms → cellular organisms → Bacteria → Acidobacteria	955	Open in IMG/M
3300018086\|Ga0187769_10857987	All Organisms → cellular organisms → Bacteria → Acidobacteria	687	Open in IMG/M
3300018086\|Ga0187769_11202387	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300018086\|Ga0187769_11496044	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300018088\|Ga0187771_10547586	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300018088\|Ga0187771_10760553	All Organisms → cellular organisms → Bacteria → Acidobacteria	822	Open in IMG/M
3300018433\|Ga0066667_10063211	Not Available	2302	Open in IMG/M
3300020579\|Ga0210407_10990053	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300020580\|Ga0210403_11251410	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300020581\|Ga0210399_10032476	All Organisms → cellular organisms → Bacteria → Acidobacteria	4169	Open in IMG/M
3300020581\|Ga0210399_11492075	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300020582\|Ga0210395_10856540	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300020583\|Ga0210401_11379410	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300021170\|Ga0210400_11133055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300021170\|Ga0210400_11483804	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300021171\|Ga0210405_11333643	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300021178\|Ga0210408_11339186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300021180\|Ga0210396_11159388	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300021401\|Ga0210393_11246962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300021402\|Ga0210385_10071671	All Organisms → cellular organisms → Bacteria	2361	Open in IMG/M
3300021406\|Ga0210386_10520820	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300021420\|Ga0210394_10274938	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1475	Open in IMG/M
3300021420\|Ga0210394_10654579	All Organisms → cellular organisms → Bacteria → Acidobacteria	922	Open in IMG/M
3300021420\|Ga0210394_11133679	All Organisms → cellular organisms → Bacteria → Acidobacteria	673	Open in IMG/M
3300021420\|Ga0210394_11516323	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300021432\|Ga0210384_10185242	All Organisms → cellular organisms → Bacteria → Acidobacteria	1871	Open in IMG/M
3300021432\|Ga0210384_10962503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300021474\|Ga0210390_11658491	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300021478\|Ga0210402_11467127	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300021478\|Ga0210402_11686518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300022513\|Ga0242667_1059589	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300022721\|Ga0242666_1058062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300022727\|Ga0224567_103608	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300022728\|Ga0224566_105056	All Organisms → cellular organisms → Bacteria → Acidobacteria	771	Open in IMG/M
3300022756\|Ga0222622_10917723	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300024295\|Ga0224556_1013908	All Organisms → cellular organisms → Bacteria → Acidobacteria	2074	Open in IMG/M
3300025414\|Ga0208935_1009131	All Organisms → cellular organisms → Bacteria → Acidobacteria	1368	Open in IMG/M
3300026499\|Ga0257181_1038390	All Organisms → cellular organisms → Bacteria → Acidobacteria	771	Open in IMG/M
3300026552\|Ga0209577_10251900	All Organisms → cellular organisms → Bacteria → Acidobacteria	1332	Open in IMG/M
3300027605\|Ga0209329_1107902	All Organisms → cellular organisms → Bacteria → Acidobacteria	611	Open in IMG/M
3300027635\|Ga0209625_1031657	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1180	Open in IMG/M
3300027674\|Ga0209118_1184743	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300027684\|Ga0209626_1049406	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1052	Open in IMG/M
3300027767\|Ga0209655_10125148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300027795\|Ga0209139_10032831	All Organisms → cellular organisms → Bacteria → Acidobacteria	1840	Open in IMG/M
3300027842\|Ga0209580_10595337	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300027853\|Ga0209274_10282873	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300027867\|Ga0209167_10444856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300028775\|Ga0302231_10510165	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300028780\|Ga0302225_10366753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300028798\|Ga0302222_10033380	All Organisms → cellular organisms → Bacteria	2106	Open in IMG/M
3300028906\|Ga0308309_10077284	All Organisms → cellular organisms → Bacteria	2504	Open in IMG/M
3300029943\|Ga0311340_11142180	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300030007\|Ga0311338_10056549	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5175	Open in IMG/M
3300030020\|Ga0311344_10237962	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300030399\|Ga0311353_11623078	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300030503\|Ga0311370_11420959	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	732	Open in IMG/M
3300030706\|Ga0310039_10315477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300031027\|Ga0302308_10453726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300031233\|Ga0302307_10460495	All Organisms → cellular organisms → Bacteria → Acidobacteria	645	Open in IMG/M
3300031236\|Ga0302324_100171926	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3509	Open in IMG/M
3300031718\|Ga0307474_10274703	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1294	Open in IMG/M
3300031719\|Ga0306917_11403328	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300031720\|Ga0307469_10365772	All Organisms → cellular organisms → Bacteria → Acidobacteria	1217	Open in IMG/M
3300031869\|Ga0316030_112086	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300032076\|Ga0306924_11938192	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300032261\|Ga0306920_100166639	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3284	Open in IMG/M
3300032515\|Ga0348332_12202951	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300032783\|Ga0335079_10012884	All Organisms → cellular organisms → Bacteria → Acidobacteria	9544	Open in IMG/M
3300032783\|Ga0335079_12211451	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300032805\|Ga0335078_10344664	All Organisms → cellular organisms → Bacteria → Acidobacteria	1981	Open in IMG/M
3300032892\|Ga0335081_10262647	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2319	Open in IMG/M
3300032895\|Ga0335074_10287258	All Organisms → cellular organisms → Bacteria	1893	Open in IMG/M
3300032954\|Ga0335083_10212123	All Organisms → cellular organisms → Bacteria	1762	Open in IMG/M
3300033158\|Ga0335077_11049044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	809	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.10%
Aquatic	Environmental → Aquatic	18.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.29%
Freshwater	Environmental → Aquatic → Freshwater	13.39%
Peat	Environmental → Terrestrial → Peat	9.45%
Sediment	Environmental → Aquatic → Sediment	4.72%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.36%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.46%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.39%
Loam	Environmental → Terrestrial → Soil → Loam	11.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.02%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.36%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.02%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.15%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.15%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.15%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.36%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.47%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.51%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.51%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.51%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.15%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.15%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.36%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.57%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.57%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.57%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.79%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.79%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022727	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU3	Environmental	Open in IMG/M
3300022728	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031027	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031869	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLI2 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_100696893	3300001546	Forest Soil	DGSPGKYLTSFKSEHIWDFHWSWDGSKLAVVRGHDESDVVLMRDMRQ*
JGIcombinedJ26739_1001360311	3300002245	Forest Soil	SERIYDFHWSFDGKQLALVRGHTDSDVVLIKDQGSGIRGQ*
Ga0066679_106962842	3300005176	Soil	KGQAITDFKAERIRDFHWSFDGKQLAMVRGHTDSDIVLIRDALQSDSP*
Ga0070709_116305512	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LTSFKSEHIWDYHWSPDGSKVGIVRGHTDSDVVLIRSEQM*
Ga0070761_102173903	3300005591	Soil	PLDGSAGKYLTSFKAEHIWDFHWSWDGSRLAIARGHDDSDVVLMRDMRQ*
Ga0070762_105236491	3300005602	Soil	LTSFTSERILDFHWSFDGSKLAMVRGHNDSDVVLIHDRQP*
Ga0070764_105988131	3300005712	Soil	GKQITDFPAEHILEFRWSFDGKQLGLIRGHTDSDVVLIRDAQQ*
Ga0066903_1070309352	3300005764	Tropical Forest Soil	SKGHYLTDFKSERIYDFHWSFDGKQLALVRGHNDSDVVLIRDMQQQ*
Ga0075023_1003105582	3300006041	Watersheds	KSEHIWDYHWSPDGSKIGIVRGHNDSDVVLMRDMQRP*
Ga0075017_1006904951	3300006059	Watersheds	DGSKGKALTNFNAEHIYDFHWSFDGKQLAIVRGHTESDVVLMRSTQP*
Ga0075017_1008160901	3300006059	Watersheds	KQITDFKSEHIIDFHWSVDGAQLALIRGHVDSDVVLIRDSQP*
Ga0075019_111123972	3300006086	Watersheds	KQLTSFKAEHIWDFHWSSDGSRLAVVRGHTDSDVVLMRDMQQ*
Ga0075015_1003622493	3300006102	Watersheds	FNAEHIYDFHWSFDGKQLAIVRGHTESDVVLMRSTQP*
Ga0070765_1000223501	3300006176	Soil	GSSGKQITDFKSEHIRDFRWSFDGSRMAIIRGHTDSDVVLIRDMQP*
Ga0070765_1002093324	3300006176	Soil	FKSEHINDFHWSFDGSKLGVIRGHTDSDVVLIRDAQP*
Ga0073928_110480362	3300006893	Iron-Sulfur Acid Spring	KQITDFTSEHIFDFHWSFDGKQLALVRGHTDADVVLIREGRQ*
Ga0099794_104595452	3300007265	Vadose Zone Soil	LDGSKGHAITDFKAERIRDLHWSFDGKQLAMVRGHTDSDVVLIRDAQQSDSH*
Ga0099794_107523352	3300007265	Vadose Zone Soil	ERIWDFHWSFDGSKLALVRGHTDADVVLIRDAQQ*
Ga0066709_1032730141	3300009137	Grasslands Soil	GSPGKQITDFKSEEISDFHWSLDGRKLGLIRGHTESDVVLTRDSQP*
Ga0116214_14089051	3300009520	Peatlands Soil	AITDFKSERIRDFHWSIDGKQLALVRGHTDSDVVLIKDQGPGAGNAGARD*
Ga0116225_11681801	3300009524	Peatlands Soil	EHIIDFHWSPDGKQLGLIRGHTDSDVVLIHDQQQ*
Ga0116125_10403252	3300009628	Peatland	GKQITDFKSEHINDFHWSFDGSKLGVIRGHTDSDVVLIRDMQP*
Ga0116125_11622862	3300009628	Peatland	SEHIIDFHWSFDGSKLGVIRGHTDSDVVLIRDMQP*
Ga0116117_10578191	3300009635	Peatland	LTSFKSEHIWDFHWSWDGSKLAVVRGHDDSDVVLMRDMRQ*
Ga0116217_109153032	3300009700	Peatlands Soil	DRILDFHWSFDGSKLGVIRGHTDSDVVLIRDSQS*
Ga0116223_102226791	3300009839	Peatlands Soil	SEHIYDFHWSFDGKQLALVRGHTDSDVVLIRDARNN*
Ga0126384_100798934	3300010046	Tropical Forest Soil	LDGSKGHSVTDFKSERIYDFHWSFDGKQLALVRGHTDSDVVLIRDTQQ*
Ga0126373_111118671	3300010048	Tropical Forest Soil	GPGKTLTAFKGEHIYDYHWSADGNRLALVQGHTDSDVVLMRNHEQ*
Ga0126381_1004234581	3300010376	Tropical Forest Soil	NFTSEHIYDFHWSFDGKQLAIVRGHNDSDVVLIRDNQP*
Ga0136449_1000692931	3300010379	Peatlands Soil	VTSFKAEHIWDYHWSPDGSKLAIVRGHTDSDVVLMRDVQQ*
Ga0136449_1001247292	3300010379	Peatlands Soil	LTSFKAERIWDFHWSEDGSKLAMARGHNDSDVVLLKDQGK*
Ga0134124_130876381	3300010397	Terrestrial Soil	ITNFKSENIGDDFRWSPDGSKLAVVRGHVDSDVVLIRDQQQ*
Ga0137392_108302632	3300011269	Vadose Zone Soil	FKYEEISDFHWSFDGSKLALIRGHTDSDVVLINDSQP*
Ga0137392_114910862	3300011269	Vadose Zone Soil	GSKGRQITDFTAEHIYDFHWSFDGKQLAMVRGHTDADVVLIRDTRP*
Ga0137391_100034509	3300011270	Vadose Zone Soil	LSKQITDFTSEHIYDFHWSFDGSKLALVRGHTDADVVLIRNSQ*
Ga0137388_108803982	3300012189	Vadose Zone Soil	KTEHIWDFHWSWDGSKLAMVRGHTDSDVVLMRDVQQ*
Ga0137363_112504941	3300012202	Vadose Zone Soil	TSFKAEHIWDYHWSPDGSRLAMVRGHTDSDVVLMRDMQP*
Ga0137419_106273952	3300012925	Vadose Zone Soil	SEHIYDFHWSFDGRKLALIRGHTDADVVLIRDSQP*
Ga0137404_107260293	3300012929	Vadose Zone Soil	EQIGNGFHWSPDGGKLAIIRGHLDSDVVLIRDAQQ*
Ga0181535_107129181	3300014199	Bog	KGKQITDFTSEHIFDFHWSFDGKQLALVRGHTDADVVLIRDARP*
Ga0181522_108871862	3300014657	Bog	FKSERISDFHWSFDGTKLGVIRGHTDSDVVLIRDIQP*
Ga0137403_104057551	3300015264	Vadose Zone Soil	AEHILDFHWSFDGSKLGLIRGHVDSDVVLIHDMK*
Ga0187802_101382662	3300017822	Freshwater Sediment	GSPGKQITDFKAERILDFHWSFDGSKLGVIRGHTDSDVVLIRDSQS
Ga0187819_102971803	3300017943	Freshwater Sediment	VISGSPGKQITNFKSELIGDFHWSFDGSKLGSIRGHTDSDVVLIRDSEK
Ga0187781_106387022	3300017972	Tropical Peatland	FTSEHIYDFHWSFDGKQLAMVRGHDDSDVVLIRDVRQ
Ga0187823_103831551	3300017993	Freshwater Sediment	PLTSFKAEHIWDYHWSPDGSRLGLVRGHTDSDVVLLRDMQQ
Ga0187816_102751622	3300017995	Freshwater Sediment	ITDFTSERIYDFHWSFDGKQLAIVRGHTDSDAVLIRDAKN
Ga0187872_104443511	3300018017	Peatland	TNFTAEHIFDFHWSFDGKQLALVRGHTDSDVVLIRQNK
Ga0187883_105229692	3300018037	Peatland	FKAEHIWDYHWSPDGSKLALVRGHTDSDVVLMRDMQP
Ga0187871_101640051	3300018042	Peatland	TDFPAEHILEFRWSFDGKQLGLIRGHTDSDVVLIHNIQQ
Ga0187871_107205572	3300018042	Peatland	TSFKAEHIWDYHWSPDGSKLALVRGHTDSDVVLIRDMQQQ
Ga0187859_106365561	3300018047	Peatland	KSERISDFHWSFDGTKLGVIRGHTDSDVVLIRDIQP
Ga0187772_104007851	3300018085	Tropical Peatland	DFNSERIFDFHWSFDGKQLALVRGHTDSDVVLIRDQGH
Ga0187769_108579872	3300018086	Tropical Peatland	SFKSEHIWDFHWSWDGSKLALVRGHTDSDVVLMREQGR
Ga0187769_112023872	3300018086	Tropical Peatland	SERIYDFHWSFDGKQLALVRGHNDSDVVLIRDTGK
Ga0187769_114960442	3300018086	Tropical Peatland	HYITDFKAEHIYDFHWSFDGKQLAMVRGHTDSDVVLIKEQGPAARD
Ga0187771_105475864	3300018088	Tropical Peatland	PGKQITNFPSERIMDFHWSFDGKQLGLIRGHTDSDVVLIRDLGK
Ga0187771_107605531	3300018088	Tropical Peatland	KSEHIWDFHWSWDGSKLALVRGHTDSDVVLMREQHR
Ga0066667_100632111	3300018433	Grasslands Soil	KQITDFKSEEISDFHWSLDGRKLGLIRGHTESDVVLIRDSQP
Ga0210407_109900532	3300020579	Soil	TSEHIYDFHWSFDGKQLALVRGHTDADVVLIQESKSSGQ
Ga0210403_112514102	3300020580	Soil	TSEHIYDFHWSFDGKQLAMVRGHTDADVVLIRDSQN
Ga0210399_100324761	3300020581	Soil	TSFQAEHIWDFHWSPDGSKLAMVRGHTDSDVVLMRDAQP
Ga0210399_114920752	3300020581	Soil	HIYDFHWSFDGKQLALVRGHTDADVVLIQESKSSGQ
Ga0210395_108565402	3300020582	Soil	DFPAEHILEFRWSFDGKQLALIRGHTDSDVVLIRDMQQ
Ga0210401_113794102	3300020583	Soil	GKLITAFSSEHIIDFHWSFDGSKLGLIHGHTDSDVVLIRDAQP
Ga0210400_111330552	3300021170	Soil	KSEHINDFRWSFDGSQLGVIRGHTDSDVVLIRDTQP
Ga0210400_114838041	3300021170	Soil	SFKSEQIYDFHWSFDGSKLALVQGHTDADVVLMREQRQ
Ga0210405_113336432	3300021171	Soil	LTSFKAEHIWGYDWSPDGSRLAVTQGHNDSDVVLMSDMQP
Ga0210408_113391862	3300021178	Soil	SERIRDFHWSFDGKQLAMVRGHTDSDVVLLRNQQP
Ga0210396_111593881	3300021180	Soil	DGSPGKQITDFPAEHILEFRWSFDGKQLALIRGHTDSDVVLIRDMQQ
Ga0210393_112469622	3300021401	Soil	DGSPGKQITDFKSEHINDFRWSFDGSQLGVIRGHTDSDVVLIRDTQP
Ga0210385_100716711	3300021402	Soil	LDESKGHYITEFKSERIYDFHWSFDGKQLAMVRGHTDSDVVLIRDGQQ
Ga0210386_105208203	3300021406	Soil	DFPAEHIVDFRWSFDGKQLGLIRGHTDSDVVLIRDLQQ
Ga0210394_102749381	3300021420	Soil	KQLTDFKSEHIIDFHWSFDGSQLGLVRGHTDSDVVLIRDSQS
Ga0210394_106545792	3300021420	Soil	TSERIQDFHFSFDGTKLAMVRGHNDSDVVLIRNAQP
Ga0210394_111336792	3300021420	Soil	LTNFTSEHIYDFHWSFDGKQLALVRGHTDADVVLIQESKSSGQ
Ga0210394_115163231	3300021420	Soil	ITDFPAEHIVDFRWSFDGKQLGLIRGHTDSDVVLIRDLQQ
Ga0210384_101852424	3300021432	Soil	AEHIYDFHWSFDGKQLAMVRGHTDADVVLIRDTRQ
Ga0210384_109625032	3300021432	Soil	LSGKQITDFKSERIIDFHWSFDGSKLGVIRGHTDSDVVVIRDAQP
Ga0210390_116584912	3300021474	Soil	KLITAFSSEHIIDFHWSFGGSKLGLIHGHTDSDVVLIRDAQP
Ga0210402_114671271	3300021478	Soil	RQVTDFTSEHLYDFHWSFDGKQLALVRGHTDADVVLIRDMQK
Ga0210402_116865181	3300021478	Soil	PLDGLPGKQITDFNSELINDFHWSLDGSKLAIVRAHTDSDVVLIRDSQQP
Ga0242667_10595891	3300022513	Soil	TEFKSERIYDFHWSFDGKQLAMVRGHTDSDVVLIRDGQQ
Ga0242666_10580622	3300022721	Soil	DFKSEHINDFHWSFDGSKLGVIRRHTDSDVVLIRDTQP
Ga0224567_1036081	3300022727	Plant Litter	DGSPGKQLTAFKSEQIKDFHWSFDGKQLALVRGHTDADVVLMRSQQP
Ga0224566_1050561	3300022728	Plant Litter	NFTSERIYDFHWSFDGKQLALVRGHTDSDVVLIRENH
Ga0222622_109177232	3300022756	Groundwater Sediment	ENIGDDFRWSPDGSKLALIRGHVDSDVVLIRDQQQ
Ga0224556_10139083	3300024295	Soil	NFSSEHIFDFHWSFDGKQLALVRGHTDADVVLIRDAKN
Ga0208935_10091313	3300025414	Peatland	GSKGRQITNFDSEHIFDFHWSFDGKQLALVRGHTDSDVVLIRDQK
Ga0257181_10383901	3300026499	Soil	KGKQLTDFTSERIWDFHWSFDGSKLALVRGHTDADVVLIRDAQQLKK
Ga0209577_102519003	3300026552	Soil	KAERIRDFHWSFDGKQLAMVRGHTDSDIVLIRDALQSDSP
Ga0209329_11079022	3300027605	Forest Soil	SEHIFDFHWSFDGKQLALVRGHTDADVVLIRDAQQ
Ga0209625_10316573	3300027635	Forest Soil	DGSKGKALTNFKAEHIYDFHWSFDGKQLAIVRGHTESDVVLMRSTQP
Ga0209118_11847431	3300027674	Forest Soil	DFKAEHIYDFHWSFDGKQLAIVRGHTESDVVLMRSTQP
Ga0209626_10494063	3300027684	Forest Soil	GKQITDFTSEHIYDFHWSFDGKQLAMGRGHTDSDVVLIRDMRP
Ga0209655_101251482	3300027767	Bog Forest Soil	TDFKSEHINDFHWSFDGSKLGVVRGHTDSDVVLIRDAQP
Ga0209139_100328311	3300027795	Bog Forest Soil	SERIYDFHWSPDGSRLALVRGHNDSDVVLMRNERP
Ga0209580_105953371	3300027842	Surface Soil	GTPGKMLTAFKAEHIWDYHWSPDGSRLGLVRGHTDSDVVLMRNAPQ
Ga0209274_102828733	3300027853	Soil	PLDGSAGKYLTSFKAEHIWDFHWSWDGSRLAIARGHDDSDVVLMRDMRQ
Ga0209167_104448562	3300027867	Surface Soil	AEHIIDFHWSFDGSQLGLVRGHTDSDVVLIRDSQS
Ga0302231_105101652	3300028775	Palsa	KGKQITYFPSEHIYDFHWSFDGKQSAIVRGHNDADVVLIRDMQK
Ga0302225_103667531	3300028780	Palsa	SEHIFDFHWSFDGKQLALVRGHTDADVVLMRDMQP
Ga0302222_100333801	3300028798	Palsa	SEHIFDFHWSFDGKQLALVRGHTDADVVLIRDTRQ
Ga0308309_100772841	3300028906	Soil	FKSEHIWDYHWSPDGSKLALVRGHTDSDVVLMRDAQP
Ga0311340_111421802	3300029943	Palsa	TSEHIYDFHWSFDGKQLAMVRGHTDADVVLIRDAHGISK
Ga0311338_100565498	3300030007	Palsa	KQITSFTSEHIYDFHSSFDGKQLAMVRGHNDADVVLIRDND
Ga0311344_102379624	3300030020	Bog	DGSKGRQITDFTSERIYDFHSSLDRKQLAIVRGHTDSDVVLIRDMQK
Ga0311353_116230782	3300030399	Palsa	GKYLTAFKSEHIWDFHWSWDGSRLAITRGHDDSDVVLMRDMRQ
Ga0311370_114209592	3300030503	Palsa	KQLTDFISEHIYDFHWSFDGKQLAMVRGHTDADVVLIRDARQQ
Ga0310039_103154772	3300030706	Peatlands Soil	KAEHLWDYHWSPDGSKLAVVRGHTDSDVVLMRDMQQQ
Ga0302308_104537261	3300031027	Palsa	NQLTDFVSEHIFDFHWSFDGKQLALVRGHTDADVVLMRDMQP
Ga0302307_104604952	3300031233	Palsa	QITSFTSEHIYDFHSSFDGKQLAMVRGHNDADVVLIRDND
Ga0302324_1001719261	3300031236	Palsa	KGKLITNFTAERIFDFHWSFDGKQLALVRGHTDADVVLMRDQKN
Ga0307474_102747033	3300031718	Hardwood Forest Soil	GKQITDFTSEHIFDFHWSFDGKQLALVRGHTDADVVLIRDVRQ
Ga0306917_114033281	3300031719	Soil	LTDFKSERIYDFHWSFDGKQLALVRGHNDSDVVLIRDMQQQ
Ga0307469_103657721	3300031720	Hardwood Forest Soil	LDGSKGRQITDFTSERIYDFHWSFDGKQLAIVRGHTDSDVVLIRDMQK
Ga0316030_1120862	3300031869	Soil	FKSEQILAFHWSFDGSKLALVQGHQDSDAVLMRNQQQPRQ
Ga0306924_119381922	3300032076	Soil	GHSITEFTSERIYDFHWSFDGKQLALVRGHNDSDVVLIRDTQQ
Ga0306920_1001666391	3300032261	Soil	SERIYDFHWSFDGKQLALVRGHNDSDVVLIRDMQQQ
Ga0348332_122029511	3300032515	Plant Litter	QITDFKSERIWDFHWSFEGNQLALVRGHTDSDVVLIRDMKN
Ga0335079_100128843	3300032783	Soil	VAAEEIWSYRWSPEGKQLALVRGHTDSDVVLLRDSQQ
Ga0335079_122114512	3300032783	Soil	NFYSEHFGDSGSSFAWSPDGKRLAVIRGHTDSDVVLIQDTQQ
Ga0335078_103446643	3300032805	Soil	ITDFKAERIYDFRWSFDGKQLVVLRGHTDADVVLVREAKQ
Ga0335081_102626475	3300032892	Soil	VAAEEIWSYRWSPDGKQLALVRGHTDSDVVLLRDSQQ
Ga0335074_102872582	3300032895	Soil	AGRFVTDFKAERIYDFHWSFDGRQLALVRGHADSDVVLIRDQGQ
Ga0335083_102121231	3300032954	Soil	SPGKQLTHFTSEHITDFHWSVDGKQVGFIRGHSESDVVLIRDTQQ
Ga0335077_110490441	3300033158	Soil	NFKSEHIGDSFGWSPDGSKLALIRGHTDSDVVLIRDAQQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065984

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences