Metagenome / Metatranscriptome Family F065926

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F065926
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	53 residues
Representative Sequence	WSGRRLVLFVDVANVLNRTNLRNASYSVDRFGRVFETTESLMPIVPSGGFVFEF
Number of Associated Samples	103
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.79 %
% of genes near scaffold ends (potentially truncated)	99.21 %
% of genes from short scaffolds (< 2000 bps)	95.28 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (88.976 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.598 % of family members)
Environment Ontology (ENVO)	Unclassified (39.370 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.630 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 21.95% Coil/Unstructured: 78.05%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF13740	ACT_6	6.30
PF07690	MFS_1	3.94
PF01028	Topoisom_I	3.15
PF00903	Glyoxalase	2.36
PF13620	CarboxypepD_reg	2.36
PF01842	ACT	1.57
PF12543	DUF3738	1.57
PF00076	RRM_1	1.57
PF00593	TonB_dep_Rec	1.57
PF02738	MoCoBD_1	1.57
PF03972	MmgE_PrpD	1.57
PF08811	DUF1800	0.79
PF02627	CMD	0.79
PF01436	NHL	0.79
PF13637	Ank_4	0.79
PF03795	YCII	0.79
PF01979	Amidohydro_1	0.79
PF04055	Radical_SAM	0.79
PF13602	ADH_zinc_N_2	0.79
PF00375	SDF	0.79
PF00005	ABC_tran	0.79
PF14013	MT0933_antitox	0.79
PF12681	Glyoxalase_2	0.79
PF01345	DUF11	0.79
PF00753	Lactamase_B	0.79
PF01699	Na_Ca_ex	0.79
PF02687	FtsX	0.79
PF13291	ACT_4	0.79
PF02874	ATP-synt_ab_N	0.79
PF12034	DUF3520	0.79
PF10417	1-cysPrx_C	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG3569	DNA topoisomerase IB	Replication, recombination and repair [L]	3.15
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	1.57
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.79
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.79
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.79
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.79
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.79
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.76 %
Unclassified	root	N/A	10.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.98 %
Unclassified	root	N/A	10.24 %
Viruses	superkingdom	All Organisms → Viruses	0.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.98 %
Unclassified	root	N/A	10.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	40.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.17 %
Unclassified	root	N/A	10.24 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	9.45 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	33.07 %
Unclassified	root	N/A	10.24 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8.66 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.36 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.07 %
Unclassified	root	N/A	10.24 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8.66 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	2.36 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.79 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.79 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.79 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.07 %
Unclassified	root	N/A	10.24 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	8.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.36 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.79 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.07 %
Unclassified	root	N/A	10.24 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	8.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.36 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.07 %
Unclassified	root	N/A	10.24 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	8.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.36 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.07 %
Unclassified	root	N/A	10.24 %
Actinoplanes nipponensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	8.66 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.36 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_125951765	Not Available	645	Open in IMG/M
3300002459\|JGI24751J29686_10127565	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300003267\|soilL1_10218802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1109	Open in IMG/M
3300004156\|Ga0062589_100867210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	827	Open in IMG/M
3300004156\|Ga0062589_101460861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300004479\|Ga0062595_102358263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300004480\|Ga0062592_101079569	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	741	Open in IMG/M
3300005093\|Ga0062594_101423210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300005093\|Ga0062594_101761915	All Organisms → cellular organisms → Bacteria → Acidobacteria	650	Open in IMG/M
3300005294\|Ga0065705_10543618	All Organisms → cellular organisms → Bacteria → Proteobacteria	745	Open in IMG/M
3300005329\|Ga0070683_100891159	Not Available	853	Open in IMG/M
3300005330\|Ga0070690_100289754	All Organisms → cellular organisms → Bacteria → Proteobacteria	1170	Open in IMG/M
3300005333\|Ga0070677_10108134	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1237	Open in IMG/M
3300005333\|Ga0070677_10918407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	507	Open in IMG/M
3300005335\|Ga0070666_10441010	All Organisms → cellular organisms → Bacteria → Proteobacteria	939	Open in IMG/M
3300005338\|Ga0068868_100666106	All Organisms → cellular organisms → Bacteria → Proteobacteria	928	Open in IMG/M
3300005338\|Ga0068868_100672912	All Organisms → cellular organisms → Bacteria → Proteobacteria	923	Open in IMG/M
3300005344\|Ga0070661_100137449	All Organisms → cellular organisms → Bacteria → Proteobacteria	1840	Open in IMG/M
3300005347\|Ga0070668_100418550	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300005347\|Ga0070668_101513571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300005364\|Ga0070673_101665464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300005441\|Ga0070700_100243788	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300005444\|Ga0070694_100416391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1055	Open in IMG/M
3300005544\|Ga0070686_100164750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	1563	Open in IMG/M
3300005544\|Ga0070686_101607695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300005563\|Ga0068855_101903991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300005578\|Ga0068854_101182238	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300005713\|Ga0066905_102102247	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300005719\|Ga0068861_100488022	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1111	Open in IMG/M
3300005719\|Ga0068861_101838327	Not Available	601	Open in IMG/M
3300005840\|Ga0068870_11290820	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300005843\|Ga0068860_100842305	All Organisms → cellular organisms → Bacteria → Proteobacteria	931	Open in IMG/M
3300005843\|Ga0068860_101169711	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300006058\|Ga0075432_10020748	All Organisms → cellular organisms → Bacteria → Proteobacteria	2246	Open in IMG/M
3300006196\|Ga0075422_10004723	All Organisms → cellular organisms → Bacteria → Proteobacteria	4249	Open in IMG/M
3300006755\|Ga0079222_10512180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	883	Open in IMG/M
3300006845\|Ga0075421_100577581	All Organisms → cellular organisms → Bacteria → Acidobacteria	1324	Open in IMG/M
3300006846\|Ga0075430_100658915	Not Available	863	Open in IMG/M
3300006853\|Ga0075420_101387117	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300006880\|Ga0075429_100253545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1541	Open in IMG/M
3300006880\|Ga0075429_101192816	All Organisms → cellular organisms → Bacteria → Acidobacteria	664	Open in IMG/M
3300006881\|Ga0068865_100900326	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300006894\|Ga0079215_11024263	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300006918\|Ga0079216_11536131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300006954\|Ga0079219_10753297	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	754	Open in IMG/M
3300007004\|Ga0079218_10257847	Not Available	1382	Open in IMG/M
3300007004\|Ga0079218_10504170	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300009094\|Ga0111539_10572626	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300009094\|Ga0111539_12938067	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300009100\|Ga0075418_10763800	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300009100\|Ga0075418_11444995	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300009156\|Ga0111538_10779596	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1211	Open in IMG/M
3300009156\|Ga0111538_13509810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300009176\|Ga0105242_12358477	All Organisms → cellular organisms → Bacteria → Proteobacteria	579	Open in IMG/M
3300009807\|Ga0105061_1068103	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300010362\|Ga0126377_12041973	All Organisms → cellular organisms → Bacteria → Acidobacteria	649	Open in IMG/M
3300010397\|Ga0134124_12996170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300010400\|Ga0134122_12502319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300010403\|Ga0134123_10818071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	927	Open in IMG/M
3300011332\|Ga0126317_10888194	All Organisms → Viruses → Predicted Viral	1067	Open in IMG/M
3300011332\|Ga0126317_10907648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300011333\|Ga0127502_11122262	All Organisms → cellular organisms → Bacteria → Proteobacteria	2202	Open in IMG/M
3300011423\|Ga0137436_1099249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	767	Open in IMG/M
3300011432\|Ga0137428_1254873	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300011445\|Ga0137427_10172766	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300012231\|Ga0137465_1096683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	885	Open in IMG/M
3300012509\|Ga0157334_1008185	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300012899\|Ga0157299_10157446	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300012902\|Ga0157291_10105633	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	774	Open in IMG/M
3300012903\|Ga0157289_10335793	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300012913\|Ga0157298_10170876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	670	Open in IMG/M
3300012948\|Ga0126375_11130012	Not Available	647	Open in IMG/M
3300012960\|Ga0164301_10886666	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300013308\|Ga0157375_10389379	Not Available	1561	Open in IMG/M
3300013308\|Ga0157375_13516032	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300014326\|Ga0157380_10410774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	1287	Open in IMG/M
3300014326\|Ga0157380_12350726	Not Available	598	Open in IMG/M
3300014745\|Ga0157377_10888205	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300015077\|Ga0173483_10670300	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300015371\|Ga0132258_10265972	All Organisms → cellular organisms → Bacteria	4200	Open in IMG/M
3300015372\|Ga0132256_100101534	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2802	Open in IMG/M
3300015372\|Ga0132256_102990365	Not Available	568	Open in IMG/M
3300015373\|Ga0132257_100342171	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1806	Open in IMG/M
3300018469\|Ga0190270_10740327	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300018469\|Ga0190270_11268395	Not Available	778	Open in IMG/M
3300018476\|Ga0190274_13703960	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300018481\|Ga0190271_10199296	All Organisms → cellular organisms → Bacteria → Acidobacteria	1991	Open in IMG/M
3300018481\|Ga0190271_10810885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1060	Open in IMG/M
3300025893\|Ga0207682_10392849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	655	Open in IMG/M
3300025893\|Ga0207682_10527907	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300025920\|Ga0207649_10293406	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300025930\|Ga0207701_10499120	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300025930\|Ga0207701_11332605	All Organisms → cellular organisms → Bacteria → Proteobacteria	587	Open in IMG/M
3300025933\|Ga0207706_10235796	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300025934\|Ga0207686_11780327	All Organisms → cellular organisms → Bacteria → Proteobacteria	510	Open in IMG/M
3300025937\|Ga0207669_11540257	All Organisms → cellular organisms → Bacteria → Proteobacteria	567	Open in IMG/M
3300025940\|Ga0207691_10227346	Not Available	1616	Open in IMG/M
3300025949\|Ga0207667_11614138	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300025960\|Ga0207651_12012039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300025961\|Ga0207712_11089892	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300026075\|Ga0207708_10228612	All Organisms → cellular organisms → Bacteria	1493	Open in IMG/M
3300026075\|Ga0207708_11800278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300026088\|Ga0207641_10075407	All Organisms → cellular organisms → Bacteria	2912	Open in IMG/M
3300026118\|Ga0207675_101760775	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300026121\|Ga0207683_11338028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	663	Open in IMG/M
3300026121\|Ga0207683_11652113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300027462\|Ga0210000_1084880	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300027526\|Ga0209968_1025647	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	972	Open in IMG/M
3300027614\|Ga0209970_1019933	Not Available	1131	Open in IMG/M
3300027639\|Ga0209387_1152726	All Organisms → cellular organisms → Bacteria → Acidobacteria	606	Open in IMG/M
3300028380\|Ga0268265_11551562	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300028381\|Ga0268264_10926433	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300031170\|Ga0307498_10096850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	901	Open in IMG/M
3300031740\|Ga0307468_101852880	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300031824\|Ga0307413_11962465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	527	Open in IMG/M
3300031858\|Ga0310892_11116703	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300031940\|Ga0310901_10389117	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300031995\|Ga0307409_102495418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	546	Open in IMG/M
3300032000\|Ga0310903_10740252	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300032003\|Ga0310897_10525589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	577	Open in IMG/M
3300032017\|Ga0310899_10352675	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300032075\|Ga0310890_10158158	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
3300032157\|Ga0315912_10138937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1904	Open in IMG/M
3300032157\|Ga0315912_10467977	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300032179\|Ga0310889_10173635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	980	Open in IMG/M
3300032421\|Ga0310812_10302992	Not Available	710	Open in IMG/M
3300034690\|Ga0364923_0025780	All Organisms → cellular organisms → Bacteria → Proteobacteria	1336	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.18%
Host-Associated	Host-Associated	48.82%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	48.82%
Terrestrial	Environmental → Terrestrial	45.67%
Aquatic	Environmental → Aquatic	5.51%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.11%
Sediment	Environmental → Aquatic → Sediment	3.15%
Freshwater	Environmental → Aquatic → Freshwater	2.36%
Floodplain	Environmental → Terrestrial → Floodplain	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.11%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.60%
Loam	Environmental → Terrestrial → Soil → Loam	7.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.15%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.57%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.57%
Sand	Environmental → Terrestrial → Soil → Sand	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.11%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.30%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.15%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.79%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.60%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.24%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.72%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.15%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.15%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.15%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.94%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.36%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.36%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.36%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012509	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027462	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes)	Host-Associated	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1259517651	3300000956	Soil	ADRVFHWSGTRLILFAEVANVLNRRNLRSTPYGVDRLGRVVDTTESLMPIVPSAGFVVEF
JGI24751J29686_101275651	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	AYSRLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNASYSVDRFGRVFETTESLMPIVPSGGFVFEF*
soilL1_102188021	3300003267	Sugarcane Root And Bulk Soil	NWSGRRLVAFVEVANILNRSNLRNTSYFVDRAGRVFETTESLMPIVPSGGLVIEF*
Ga0062589_1008672102	3300004156	Soil	ADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSVDRAGRVFETTESLMPIVPSGGLVFEF
Ga0062589_1014608611	3300004156	Soil	RMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0062595_1023582632	3300004479	Soil	AYARLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0062592_1010795691	3300004480	Soil	LNHENLRNTSPGIDRAGRVFDATESLLPIVPSGGLVIEF*
Ga0062594_1014232102	3300005093	Soil	LDVRADRAFTWSGRRFVLFLDVANVLNRTNERNASYSVDRAGRVFETTESLMPIVPSGGFVVEF*
Ga0062594_1017619151	3300005093	Soil	AYSRLDVRADRAFTWSGRRLVVFVDVANVLNQTNLRNAGYSVDRAGRIFETTESLMPIVPSGGLVIEF*
Ga0065705_105436181	3300005294	Switchgrass Rhizosphere	LPAYSRLDVRADRAFNWSGRRLVLFIDVANVLNHTNERNASYFVDRGGRVFETTESLLPIVPSGGFVIEF*
Ga0070683_1008911591	3300005329	Corn Rhizosphere	LRADRAFNWSSRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0070690_1002897543	3300005330	Switchgrass Rhizosphere	FVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0070677_101081342	3300005333	Miscanthus Rhizosphere	VLNHENLRNTSPGIDRAGRVFDATESLLPIVPSGGLVIEF*
Ga0070677_109184072	3300005333	Miscanthus Rhizosphere	ADRAFNWSSRRLVVFVDVANVLNRQNVRNTSYTIDRAGRVFDTTGSLLPIVPSGGVVVEF
Ga0070666_104410103	3300005335	Switchgrass Rhizosphere	VDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0068868_1006661062	3300005338	Miscanthus Rhizosphere	TERNILRLPPYARLDVRADRAFNWSSRRLVVFVDVANVLNRQNLRNTSYSIDRAGRVFDTTGSLLPIVPSGGLVVEF*
Ga0068868_1006729121	3300005338	Miscanthus Rhizosphere	NIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0070661_1001374493	3300005344	Corn Rhizosphere	FNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0070668_1004185501	3300005347	Switchgrass Rhizosphere	RLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNASYSIDRFGRVFETTESLMPIVPSGGFVFEF*
Ga0070668_1015135711	3300005347	Switchgrass Rhizosphere	IFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0070673_1016654641	3300005364	Switchgrass Rhizosphere	LLRLPPYSRLDVRADRAFTWSSRRLVAFVDIANVLNRRNVRNTSYAIDGAGRVLGRGGSLLPFIPSGGLVVEF*
Ga0070700_1002437881	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VLFVEVANVLNRSNLRNTNYSVDRAGRVFDTTESMIPIVPSGGFVIEF*
Ga0070694_1004163911	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	DVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0070686_1001647502	3300005544	Switchgrass Rhizosphere	DVRADRAFNWSGRRLVLFVDVANVLNRTNLRNASYSIDRFGRVFETTESLMPIVPSGGFVFEF*
Ga0070686_1016076952	3300005544	Switchgrass Rhizosphere	FVDVANVLNHTNVRNASYSVDRAGRVFETTESLIPIVPSGGFVIEF*
Ga0068855_1019039911	3300005563	Corn Rhizosphere	YARLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSFSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0068854_1011822382	3300005578	Corn Rhizosphere	TNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0066905_1021022472	3300005713	Tropical Forest Soil	VLFVDVANVLNHTNLRNSSYSIDRAGRVFETTESLMPIVPSGGFVFEF*
Ga0068861_1004880222	3300005719	Switchgrass Rhizosphere	LRNQEYGVDRAGRVFGATESLMPIVPSGGFVIEF*
Ga0068861_1018383271	3300005719	Switchgrass Rhizosphere	DVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0068870_112908202	3300005840	Miscanthus Rhizosphere	LNRTNLRNSSFSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0068860_1008423051	3300005843	Switchgrass Rhizosphere	ANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0068860_1011697111	3300005843	Switchgrass Rhizosphere	NWSGRRMVLFVEVANVLNRSNLRNTNYSVDRAGRVFETTESMIPIVPSGGFMIEF*
Ga0075432_100207481	3300006058	Populus Rhizosphere	NLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0075422_100047231	3300006196	Populus Rhizosphere	RRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0079222_105121801	3300006755	Agricultural Soil	SRLDVRADHAFNWWGRRLVLFVDVANVLNRTNVRNANYFVDRTGRVLETTESLMPIVPSGGLMIEF*
Ga0075421_1005775811	3300006845	Populus Rhizosphere	TNLRNASYSVDRAGRVFETTESLLPIVPSGGLTVEF*
Ga0075430_1006589152	3300006846	Populus Rhizosphere	RRRLVLFVDVANILNRTNLRNTHYGIDSAGRVFETTESLMPIVPSGGFVIEF*
Ga0075420_1013871171	3300006853	Populus Rhizosphere	WSRRRLVLFVDVANILNRTNLRNTHYGIDSAGRVFETTESLMPIVPSGGFVIEF*
Ga0075429_1002535451	3300006880	Populus Rhizosphere	ADRAFNVSRRRLLVFVEVANVFNHKNLRNAAYSVDRAGRVFETTESLLPIVPSGGVVFEF
Ga0075429_1011928162	3300006880	Populus Rhizosphere	DVANVLNHTNLRNASYSVDRAGRVFETTESLLPIVPSGGLTVEF*
Ga0068865_1009003261	3300006881	Miscanthus Rhizosphere	RLPAYSRLDVRADRAFTWSGRRLVVFVDVANVLNHENFRNASYSIDRAGRVFETTESLMPIVPSGGLVIEF*
Ga0079215_110242632	3300006894	Agricultural Soil	AFNWSGRRLVVFVDVANVLNHTNARNSAYSVDRRGRVFGTMESLMPIVPSGGLVVEF*
Ga0079216_115361312	3300006918	Agricultural Soil	GRRLVLIVDVANILNRTNLPNSSYFVDRVGRVFETTESLMLIVPSGGLVVEF*
Ga0079219_107532971	3300006954	Agricultural Soil	NVLNRTNVRNANYFVDRTGRVLETTESLMPIVPSGGLMIEF*
Ga0079218_102578471	3300007004	Agricultural Soil	NVRNSAYSVDRRGRVFETMESLMPIVPSGGLVVEF*
Ga0079218_105041702	3300007004	Agricultural Soil	VVFVDVANILNQENLRNAGYSVDRAGRVFETMESLMPIVPSGGLVIEF*
Ga0111539_105726263	3300009094	Populus Rhizosphere	NRTNLRNVPFSVDRRGRVSGATDSLMPIVPSVGCVVEF*
Ga0111539_129380672	3300009094	Populus Rhizosphere	WSRRRLVLFVDVGNVLNRENLRNSSYSIDQRGRVFETTESLLPIVPSGGLVVEF*
Ga0075418_107638003	3300009100	Populus Rhizosphere	RADRAFTWSGGRLVLFLDVANVLNRTNVRNSSYSVDRVGRVFETTESLMPIVPSGGFVIEF*
Ga0075418_114449951	3300009100	Populus Rhizosphere	LDLRADRAFNWSSRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0111538_107795961	3300009156	Populus Rhizosphere	RLPAYSRLDVRADRAFNWSGRRLVVFVDVANVVNHTNERNASYFVDRAGRVFETTESLMPIVPSGGFVIEF*
Ga0111538_135098102	3300009156	Populus Rhizosphere	LDVRADRAFTWSSRRLVAFVDIANVLNQQNLRNTSYAVDGSGRVLGRPGSLLPFVPSGGLVVEF*
Ga0105242_123584772	3300009176	Miscanthus Rhizosphere	VFVDVANITNRRNLRNTSYSVDRAGRVFDTTGSLLPIVPSGGLVVEF*
Ga0105061_10681031	3300009807	Groundwater Sand	PVYSRLDVRADRAFNWSGRRLVVFVDVANILNRTNLRNSSYSLDRAGRVFEVTESLMPIVPSGGLVIEF*
Ga0126377_120419731	3300010362	Tropical Forest Soil	AFNWWGRRLVLFIDVANMLNRTNVRNANYFVDRAGRVLETTESLMPIVPSGGLMIEF*
Ga0134124_129961702	3300010397	Terrestrial Soil	RLPAYSRFDVRADRAFNWSKRRLLVFVEVANVLSHTNLRNASYSVDRAGRVFETTESLLPIVPSGGVVFEF*
Ga0134122_125023191	3300010400	Terrestrial Soil	EVANVLNHTNLRNASYSVDRAGRVFETTESLLPIVPSDGVVFEF*
Ga0134123_108180711	3300010403	Terrestrial Soil	NWSGRRLTVFVDVANILNRTNLRNASYSVDRAGRVFETTESTMPIVPSGGLVIEF*
Ga0126317_108881942	3300011332	Soil	FASLVGERNTLRLPGYARLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNTSYSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0126317_109076482	3300011332	Soil	LFVDVANVLNRTNLRNTSYSLDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0127502_111222623	3300011333	Soil	FVDVANVANRTNLRNIPGFVDRAGRVFGTTESLMPIVPSGGFVIEF*
Ga0137436_10992491	3300011423	Soil	NVLNRTNLRNSSYSVDRFGRVFETTESLMPIVPSGGFVFEF*
Ga0137428_12548732	3300011432	Soil	LRNASYSVERTGRVFDTTESLMPIVPSGGLVIEF*
Ga0137427_101727661	3300011445	Soil	RENLRNIPPFVDRAGRVFGTTESLMPIVPSGGFVIEF*
Ga0137465_10966831	3300012231	Soil	LRNSSYSVDRFGRVFETTESLMPIVPSGGFVFEF*
Ga0157334_10081852	3300012509	Soil	RFDVRADRAFNWSGRRLVLFVDVGNVLNRTNLRNSSYSIDQRGRVFETTESLLPIVPSGGLVVEF*
Ga0157299_101574461	3300012899	Soil	RRLVVFVDVANVLNHENLRNTSPGIDRAGRVFDATESLLPIVPSGGLVIEF*
Ga0157291_101056331	3300012902	Soil	LDVRADRAFTWASRRLVVFVDVANVLNHENLRNTSPGIDRAGRVFDATESLLPIVPSGGLVIEF*
Ga0157289_103357932	3300012903	Soil	NLRNTSYSVDRAGRVFDTTGSLLPIVPSGGLVVEF*
Ga0157298_101708761	3300012913	Soil	NLRNASYSVDRFGRVFETTESLMPIVPSGGFVFEF*
Ga0126375_111300122	3300012948	Tropical Forest Soil	DLRADRAFNWSSRRMVLFVDVANIFNRTNLRNTPYFVDRVGRVVGTTESLMPIVPSGGFVIEF*
Ga0164301_108866661	3300012960	Soil	VEPRADHAFNWWGQRLVVFVDVANVLNRTNVRNSNYFVDRAGRVMETTESLMPIVPSGGLMIEF*
Ga0157375_103893791	3300013308	Miscanthus Rhizosphere	LFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0157375_135160322	3300013308	Miscanthus Rhizosphere	LFVDVANVLNHTNVRNASYSVDRAGRVFETTESLIPIVPSGGFVIEF*
Ga0157380_104107741	3300014326	Switchgrass Rhizosphere	GRRLVLFVDIANVLNHTNLRNASYSLDRVGRVFETTESLMPIVPSGGLVFEF*
Ga0157380_123507262	3300014326	Switchgrass Rhizosphere	FTWSSRRLVLFVDVANIFNRTNLRNTPYLVDGAGRVLNVTESLMPIVPSGGFVIEF*
Ga0157377_108882052	3300014745	Miscanthus Rhizosphere	FVDVANITNRENLRNTPPFVDRAGRVFGTTESLMPIVPSGGFVIEF*
Ga0173483_106703001	3300015077	Soil	WSSRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0132258_102659721	3300015371	Arabidopsis Rhizosphere	VASHTNLRNASYVVDRAGRVFGATESLMPIVPSGGFTMEF*
Ga0132256_1001015341	3300015372	Arabidopsis Rhizosphere	FVDVANVLNRTNLRNSSFSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0132256_1029903651	3300015372	Arabidopsis Rhizosphere	KNLRNTPYSVDRTGRAFGVTETMMPIVPSAGFVVEF*
Ga0132257_1003421712	3300015373	Arabidopsis Rhizosphere	NWSGRRLVAFVEVANVLNRTNLRNTSYSIDRAGRVFETTESTLPIVPSGGLVIEF*
Ga0190270_107403271	3300018469	Soil	ANVLNRQNLRNSSYSIDRAGRVFDITDSLLPIVPSGGLVIEF
Ga0190270_112683952	3300018469	Soil	DRAFNWSSRRLVLFVEVANILNRDNRRNTPYGVNGAGRVFGATESLMPIVPSAGFVVEF
Ga0190274_137039602	3300018476	Soil	VANVLNHENLRNTSYSIDRAGRVFDATESLLPIVPSGGLIVEF
Ga0190271_101992963	3300018481	Soil	RAFTWSGRRLVVFVDIANVLNQTNLRNAGYSVDRVGRVFETTESLMPIVPSGGLVIEF
Ga0190271_108108851	3300018481	Soil	HENLRNTSYGVDRAGRVFAATESLLPIVPSGGLVIEF
Ga0207682_103928492	3300025893	Miscanthus Rhizosphere	FNWSGRRLVLFVDVANVLNHTNLRNTSYSVDRAGRVFEATESLMPIVPSGGFVIEF
Ga0207682_105279071	3300025893	Miscanthus Rhizosphere	LVVFVDVANVTNRRNLRNTSYSVDRAGRVFDTTGSLLPIVPSGGLVVEF
Ga0207649_102934061	3300025920	Corn Rhizosphere	IFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0207701_104991203	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	NRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0207701_113326052	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	LRADRAFTWSSRRLVAFVDVANVLNRQNLRNTSYSIDRAGRVFDTTGSLLPIVPSGGLVVEF
Ga0207706_102357962	3300025933	Corn Rhizosphere	AFNWSGRRLVLFVDVANITNRENLRNVPPFVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0207686_117803271	3300025934	Miscanthus Rhizosphere	ITNRRNLRNTSYSVDRAGRVFDTTGSLLPIVPSGGLVVEF
Ga0207669_115402572	3300025937	Miscanthus Rhizosphere	VDVANITNRRNLRNTSYSVDRAGRVFDTTGSLLPIVPSGGLVVEF
Ga0207691_102273464	3300025940	Miscanthus Rhizosphere	FNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0207667_116141382	3300025949	Corn Rhizosphere	YARLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSFSVDRAGRVFETTESLMPIVPSGGLVFEF
Ga0207651_120120392	3300025960	Switchgrass Rhizosphere	LLRLPPYSRLDVRADRAFTWSSRRLVAFVDIANVLNRRNVRNTSYAIDGAGRVLGRGGSLLPFIPSGGLVVEF
Ga0207712_110898921	3300025961	Switchgrass Rhizosphere	RRLVLFLDVANVLNRTNVRNSSYSADRAGRVFETTESLMPIVPSGGFVIEF
Ga0207708_102286123	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VLFVEVANVLNRSNLRNTNYSVDRAGRVFDTTESMIPIVPSGGFVIEF
Ga0207708_118002781	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	RADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSVDRVGRVFETTESLMPIVPSGGFVFE
Ga0207641_100754071	3300026088	Switchgrass Rhizosphere	DVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0207675_1017607751	3300026118	Switchgrass Rhizosphere	VVFVDVANIFNRTNLRNQEYAVDRAGRVFGTTESLMPIVPSGGFVIEF
Ga0207683_113380281	3300026121	Miscanthus Rhizosphere	WSGRRLVLFVDVANVLNRTNLRNASYSVDRFGRVFETTESLMPIVPSGGFVFEF
Ga0207683_116521132	3300026121	Miscanthus Rhizosphere	RQNLRNTSYSIDRAGRVFETTESLLPIVPSGGLVIEF
Ga0210000_10848801	3300027462	Arabidopsis Thaliana Rhizosphere	MVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0209968_10256473	3300027526	Arabidopsis Thaliana Rhizosphere	SRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0209970_10199333	3300027614	Arabidopsis Thaliana Rhizosphere	FVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0209387_11527261	3300027639	Agricultural Soil	FNWSGRRLVVFVDVANVLNHTNARNSAYSVDRRGRVFGTMESLMPIVPSGGLVVEF
Ga0268265_115515621	3300028380	Switchgrass Rhizosphere	RLPAYSRLDLRADRAFNWSSRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0268264_109264331	3300028381	Switchgrass Rhizosphere	NWSGRRMVLFVEVANVLNRSNLRNTNYSVDRAGRVFETTESMIPIVPSGGFMIEF
Ga0307498_100968502	3300031170	Soil	DVRADRAFNWSGRRLVLFVDVANVLNRTNLRNASYSVDRFGRVFETTESLMPIVPSGGFVFEF
Ga0307468_1018528802	3300031740	Hardwood Forest Soil	WSGRRFVVFVDVANIANRTNLRNQEYGVDRAGRVFGATESLMPIVPSGGFVIEF
Ga0307413_119624651	3300031824	Rhizosphere	IDVANVLNRTNLRNGSYSLDRAGRVFEATESLMPIVSSGGLVFEF
Ga0310892_111167031	3300031858	Soil	SSRRLVLFVDVANIFNRTNLRNTPYGIDRAGRVFNPTESLLPIVPSGGLVIEF
Ga0310901_103891172	3300031940	Soil	VANVLNRTNVRNASYSVDRAGRVFETTESLMPIVPSGGFVIEF
Ga0307409_1024954182	3300031995	Rhizosphere	ARLDVRADRAFNWSGRRLVLFIDVANVLNRTNLRNGSYSLDRAGRVFEATESLMPIVPSGGLVFEF
Ga0310903_107402522	3300032000	Soil	PAYSRLDVRADRAFTWSGGRLVLFLDVANVLNRTNVRNSSYSVDRVGRVFETTESLMPIVPSGGFVIEF
Ga0310897_105255891	3300032003	Soil	ANVLNRTNLRNSSYSVDRFGRVFETTESLMPIVPSGGFVFEF
Ga0310899_103526751	3300032017	Soil	VLFVDVANITNRENLRNIPPFVDRAGRVFGTTESLMPIVPSGGFVIEF
Ga0310890_101581582	3300032075	Soil	DRAFNWSGRRLVLFVDVANITNRENLRNIPPFVDRAGRVFGTTESLMPIVPSGGFVIEF
Ga0315912_101389371	3300032157	Soil	DVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSIDRVGRVFDTMESLMPIVPSGGFVFEF
Ga0315912_104679771	3300032157	Soil	AYARLDVRADRAFNWSSRRLVVFVDVANVLNRRNLRNTSYTIDRAGRVFDTMGSLLPIVPSGGLVIEF
Ga0310889_101736351	3300032179	Soil	AYSRLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSVDRFGRVFETTESLMPIVPSGGFVFEF
Ga0310812_103029923	3300032421	Soil	DLRADRAFNWSSRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0364923_0025780_3_203	3300034690	Sediment	SRLDVRADRGFTWSGKRLVVFVEVANVLNRQNLRNTSYSIDGAGRVLGRKGTLLPIVPSGGFVIEF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065926

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences