Metagenome / Metatranscriptome Family F065505

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065505
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	83 residues
Representative Sequence	MHYLAPFPIIVGVVGAIAGLLWLVAAGSEEDGGPDTGLFFLFGAWYIVMRVLKALASDPMSVLPAFGILLGSAGLIWLGIVML
Number of Associated Samples	103
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	21.26 %
% of genes near scaffold ends (potentially truncated)	26.77 %
% of genes from short scaffolds (< 2000 bps)	87.40 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.394 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (8.661 % of family members)
Environment Ontology (ENVO)	Unclassified (51.181 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.205 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.86% β-sheet: 0.00% Coil/Unstructured: 35.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF02502	LacAB_rpiB	4.72
PF08241	Methyltransf_11	2.36
PF02604	PhdYeFM_antitox	1.57
PF05635	23S_rRNA_IVP	1.57
PF00353	HemolysinCabind	1.57
PF07589	PEP-CTERM	1.57
PF12867	DinB_2	1.57
PF06827	zf-FPG_IleRS	1.57
PF14568	SUKH_6	0.79
PF13470	PIN_3	0.79
PF00873	ACR_tran	0.79
PF14833	NAD_binding_11	0.79
PF02386	TrkH	0.79
PF00583	Acetyltransf_1	0.79
PF08281	Sigma70_r4_2	0.79
PF00578	AhpC-TSA	0.79
PF13586	DDE_Tnp_1_2	0.79
PF06831	H2TH	0.79
PF09346	SMI1_KNR4	0.79
PF13302	Acetyltransf_3	0.79
PF02233	PNTB	0.79
PF01361	Tautomerase	0.79
PF02743	dCache_1	0.79
PF00722	Glyco_hydro_16	0.79
PF04140	ICMT	0.79
PF00144	Beta-lactamase	0.79
PF04616	Glyco_hydro_43	0.79
PF01075	Glyco_transf_9	0.79
PF13810	DUF4185	0.79
PF00248	Aldo_ket_red	0.79
PF02445	NadA	0.79
PF02223	Thymidylate_kin	0.79
PF13541	ChlI	0.79
PF13709	DUF4159	0.79
PF13683	rve_3	0.79
PF12838	Fer4_7	0.79
PF07470	Glyco_hydro_88	0.79
PF12850	Metallophos_2	0.79
PF07883	Cupin_2	0.79
PF00881	Nitroreductase	0.79
PF07726	AAA_3	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG0698	Ribose 5-phosphate isomerase RpiB	Carbohydrate transport and metabolism [G]	4.72
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	1.57
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	1.57
COG0125	Thymidylate kinase	Nucleotide transport and metabolism [F]	0.79
COG0168	Trk-type K+ transport system, membrane component	Inorganic ion transport and metabolism [P]	0.79
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	0.79
COG0379	Quinolinate synthase	Coenzyme transport and metabolism [H]	0.79
COG0859	ADP-heptose:LPS heptosyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.79
COG1282	NAD/NADP transhydrogenase beta subunit	Energy production and conversion [C]	0.79
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.79
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.79
COG1942	Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.79
COG2273	Beta-glucanase, GH16 family	Carbohydrate transport and metabolism [G]	0.79
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.79
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.39 %
Unclassified	root	N/A	49.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.39 %
Unclassified	root	N/A	49.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.39 %
Unclassified	root	N/A	49.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.61 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	14.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.09 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.57 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.57 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.61 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	11.81 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.57 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.57 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.61 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	6.30 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	3.15 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.57 %
Hyphomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales	0.79 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.79 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.61 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	3.94 %
Phycisphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales	2.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.57 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.79 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	0.79 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.79 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.79 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.79 %
Hyphomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae	0.79 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.61 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	3.15 %
unclassified Phycisphaerales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales	2.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.57 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	0.79 %
Phycisphaerae bacterium RAS1	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium RAS1	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.79 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.79 %
Hyphomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas	0.79 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.79 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.61 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	3.15 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	2.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.57 %
Stieleria	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Stieleria	0.79 %
Hymenobacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae	0.79 %
Hyphomonas jannaschiana	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas jannaschiana	0.79 %
Phycisphaerae bacterium RAS1	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium RAS1	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.79 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.79 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.61 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	3.15 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	2.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.57 %
Stieleria varia	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Stieleria → Stieleria varia	0.79 %
Hymenobacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter	0.79 %
Hyphomonas jannaschiana	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas jannaschiana	0.79 %
Phycisphaerae bacterium RAS1	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium RAS1	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.79 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.79 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104132214	Not Available	529	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104695330	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105013632	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter	807	Open in IMG/M
3300001537\|A2065W1_10041948	Not Available	907	Open in IMG/M
3300004114\|Ga0062593_102473986	Not Available	587	Open in IMG/M
3300004153\|Ga0063455_100583829	Not Available	722	Open in IMG/M
3300004463\|Ga0063356_103253279	Not Available	700	Open in IMG/M
3300005327\|Ga0070658_11500981	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	584	Open in IMG/M
3300005329\|Ga0070683_100814684	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300005330\|Ga0070690_101236394	Not Available	597	Open in IMG/M
3300005338\|Ga0068868_100751495	Not Available	876	Open in IMG/M
3300005343\|Ga0070687_101050256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas jannaschiana	593	Open in IMG/M
3300005347\|Ga0070668_100269664	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300005354\|Ga0070675_101683134	Not Available	585	Open in IMG/M
3300005355\|Ga0070671_100407846	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300005355\|Ga0070671_100845257	All Organisms → cellular organisms → Bacteria → PVC group	798	Open in IMG/M
3300005435\|Ga0070714_100020975	All Organisms → cellular organisms → Bacteria	5342	Open in IMG/M
3300005532\|Ga0070739_10490078	Not Available	556	Open in IMG/M
3300005539\|Ga0068853_101367028	Not Available	685	Open in IMG/M
3300005548\|Ga0070665_100005436	All Organisms → cellular organisms → Bacteria	13141	Open in IMG/M
3300005577\|Ga0068857_100195943	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1841	Open in IMG/M
3300005578\|Ga0068854_100286710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1328	Open in IMG/M
3300005587\|Ga0066654_10247368	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300005614\|Ga0068856_102686691	Not Available	503	Open in IMG/M
3300005617\|Ga0068859_101406493	Not Available	769	Open in IMG/M
3300005617\|Ga0068859_102363351	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300005618\|Ga0068864_101154162	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium RAS1	772	Open in IMG/M
3300005618\|Ga0068864_102160697	Not Available	563	Open in IMG/M
3300005841\|Ga0068863_100307994	All Organisms → cellular organisms → Bacteria → PVC group	1537	Open in IMG/M
3300005842\|Ga0068858_102237672	Not Available	540	Open in IMG/M
3300005844\|Ga0068862_101038972	All Organisms → cellular organisms → Bacteria → Proteobacteria	812	Open in IMG/M
3300006028\|Ga0070717_10059093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	3172	Open in IMG/M
3300006162\|Ga0075030_100667297	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300006845\|Ga0075421_101510587	Not Available	734	Open in IMG/M
3300006845\|Ga0075421_101633257	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300006846\|Ga0075430_100366897	All Organisms → cellular organisms → Bacteria → Proteobacteria	1189	Open in IMG/M
3300006847\|Ga0075431_100392832	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300006853\|Ga0075420_100157897	All Organisms → cellular organisms → Bacteria	1988	Open in IMG/M
3300006854\|Ga0075425_100542853	Not Available	1338	Open in IMG/M
3300006918\|Ga0079216_11054478	Not Available	635	Open in IMG/M
3300006969\|Ga0075419_10420177	All Organisms → cellular organisms → Bacteria → Proteobacteria	919	Open in IMG/M
3300007004\|Ga0079218_10214318	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300007004\|Ga0079218_10993730	Not Available	839	Open in IMG/M
3300007004\|Ga0079218_12023610	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300007004\|Ga0079218_13810010	Not Available	513	Open in IMG/M
3300009012\|Ga0066710_104551535	Not Available	518	Open in IMG/M
3300009093\|Ga0105240_10372857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1613	Open in IMG/M
3300009094\|Ga0111539_11035754	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300009098\|Ga0105245_10013494	All Organisms → cellular organisms → Bacteria	7117	Open in IMG/M
3300009100\|Ga0075418_12583541	Not Available	554	Open in IMG/M
3300009137\|Ga0066709_100675864	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1481	Open in IMG/M
3300009148\|Ga0105243_12120917	Not Available	598	Open in IMG/M
3300009148\|Ga0105243_12969959	Not Available	514	Open in IMG/M
3300009174\|Ga0105241_11963697	Not Available	575	Open in IMG/M
3300009174\|Ga0105241_12648449	Not Available	504	Open in IMG/M
3300009177\|Ga0105248_13399691	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	506	Open in IMG/M
3300009502\|Ga0114951_10000231	All Organisms → cellular organisms → Bacteria	80678	Open in IMG/M
3300009545\|Ga0105237_10579476	Not Available	1129	Open in IMG/M
3300009545\|Ga0105237_11495451	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	682	Open in IMG/M
3300010042\|Ga0126314_11013063	Not Available	617	Open in IMG/M
3300010044\|Ga0126310_11402350	Not Available	569	Open in IMG/M
3300010166\|Ga0126306_11588256	Not Available	544	Open in IMG/M
3300010375\|Ga0105239_10448564	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	1463	Open in IMG/M
3300010375\|Ga0105239_11771074	Not Available	715	Open in IMG/M
3300012205\|Ga0137362_10597031	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	952	Open in IMG/M
3300012212\|Ga0150985_120848100	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300012411\|Ga0153880_1373848	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	982	Open in IMG/M
3300012469\|Ga0150984_107440300	Not Available	701	Open in IMG/M
3300012469\|Ga0150984_113283156	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300012469\|Ga0150984_120759457	Not Available	723	Open in IMG/M
3300012987\|Ga0164307_11033745	Not Available	671	Open in IMG/M
3300013104\|Ga0157370_10430886	Not Available	1213	Open in IMG/M
3300013105\|Ga0157369_10804530	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300013296\|Ga0157374_10818737	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300013296\|Ga0157374_11630040	Not Available	669	Open in IMG/M
3300013307\|Ga0157372_10642450	Not Available	1236	Open in IMG/M
3300013307\|Ga0157372_10791845	Not Available	1102	Open in IMG/M
3300014325\|Ga0163163_12504791	Not Available	574	Open in IMG/M
3300014501\|Ga0182024_11133371	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Stieleria → Stieleria varia	921	Open in IMG/M
3300014839\|Ga0182027_12226220	Not Available	520	Open in IMG/M
3300014969\|Ga0157376_10191488	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1876	Open in IMG/M
3300014969\|Ga0157376_12776189	Not Available	530	Open in IMG/M
3300015371\|Ga0132258_12317078	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1346	Open in IMG/M
3300017792\|Ga0163161_12085261	Not Available	504	Open in IMG/M
3300018482\|Ga0066669_11026886	Not Available	744	Open in IMG/M
3300021445\|Ga0182009_10051291	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1745	Open in IMG/M
3300022555\|Ga0212088_10000035	All Organisms → cellular organisms → Bacteria	234558	Open in IMG/M
3300024347\|Ga0179591_1094246	All Organisms → cellular organisms → Bacteria	2304	Open in IMG/M
3300025903\|Ga0207680_11174353	Not Available	548	Open in IMG/M
3300025914\|Ga0207671_11177264	Not Available	600	Open in IMG/M
3300025927\|Ga0207687_10007202	All Organisms → cellular organisms → Bacteria	7332	Open in IMG/M
3300025929\|Ga0207664_10138644	All Organisms → cellular organisms → Bacteria → PVC group	2055	Open in IMG/M
3300025931\|Ga0207644_10666136	Not Available	867	Open in IMG/M
3300025944\|Ga0207661_11427538	Not Available	635	Open in IMG/M
3300025949\|Ga0207667_10775060	Not Available	957	Open in IMG/M
3300025972\|Ga0207668_11245645	Not Available	669	Open in IMG/M
3300026023\|Ga0207677_11058765	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	738	Open in IMG/M
3300026023\|Ga0207677_11640807	Not Available	596	Open in IMG/M
3300026078\|Ga0207702_12258727	Not Available	532	Open in IMG/M
3300026088\|Ga0207641_10211657	All Organisms → cellular organisms → Bacteria	1793	Open in IMG/M
3300026142\|Ga0207698_11282741	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300026320\|Ga0209131_1181212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1016	Open in IMG/M
3300027885\|Ga0209450_10000036	All Organisms → cellular organisms → Bacteria	100411	Open in IMG/M
3300027886\|Ga0209486_10456282	Not Available	786	Open in IMG/M
3300027909\|Ga0209382_10330577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1712	Open in IMG/M
3300027909\|Ga0209382_12293760	Not Available	507	Open in IMG/M
3300027911\|Ga0209698_10601511	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300028379\|Ga0268266_10004539	All Organisms → cellular organisms → Bacteria	13262	Open in IMG/M
3300028379\|Ga0268266_10259887	Not Available	1609	Open in IMG/M
3300028731\|Ga0302301_1071531	All Organisms → cellular organisms → Bacteria → Proteobacteria	915	Open in IMG/M
3300030056\|Ga0302181_10249242	All Organisms → cellular organisms → Bacteria → Proteobacteria	804	Open in IMG/M
3300030687\|Ga0302309_10016654	All Organisms → cellular organisms → Bacteria	4614	Open in IMG/M
3300031229\|Ga0299913_10819222	Not Available	904	Open in IMG/M
3300031548\|Ga0307408_100328734	Not Available	1290	Open in IMG/M
3300031708\|Ga0310686_107373526	All Organisms → cellular organisms → Bacteria	41227	Open in IMG/M
3300031715\|Ga0307476_10003976	All Organisms → cellular organisms → Bacteria	8843	Open in IMG/M
3300031731\|Ga0307405_11542672	Not Available	585	Open in IMG/M
3300031939\|Ga0308174_10126785	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1870	Open in IMG/M
3300031995\|Ga0307409_101355575	Not Available	737	Open in IMG/M
3300031995\|Ga0307409_102674031	Not Available	527	Open in IMG/M
3300032004\|Ga0307414_11417740	Not Available	646	Open in IMG/M
3300032074\|Ga0308173_10078324	All Organisms → cellular organisms → Bacteria	2506	Open in IMG/M
3300032074\|Ga0308173_11379915	Not Available	661	Open in IMG/M
3300032895\|Ga0335074_10000556	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	52112	Open in IMG/M
3300032895\|Ga0335074_11075669	Not Available	697	Open in IMG/M
3300033134\|Ga0335073_10890184	Not Available	939	Open in IMG/M
3300034384\|Ga0372946_0293075	Not Available	789	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	58.27%
Environmental	Environmental	41.73%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	58.27%
Terrestrial	Environmental → Terrestrial	37.01%
Aquatic	Environmental → Aquatic	4.72%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	40.16%
Soil	Environmental → Terrestrial → Soil	34.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.32%
Freshwater	Environmental → Aquatic → Freshwater	3.15%
Peat	Environmental → Terrestrial → Peat	2.36%
Sediment	Environmental → Aquatic → Sediment	1.57%
Roots	Host-Associated → Plants → Roots	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	29.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.02%
Loam	Environmental → Terrestrial → Soil → Loam	6.30%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.36%
Lake	Environmental → Aquatic → Freshwater → Lake	1.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.57%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.79%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	29.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.02%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.30%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.51%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.36%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.57%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.57%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.79%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.09%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.30%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.30%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.15%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.15%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.15%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.15%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.36%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.36%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.36%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.57%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.57%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.79%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.79%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.79%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.79%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009502	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012411	Freshwater microbial communities from Lake Alinen Mustaj?rvi, Finland - AM7a metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028731	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1041322141	3300000364	Soil	VHYVAPIPIIFGVVGAIVGLLWLVAAGSDDDGGPEKSLFFLFGAWYIGMRVVKALFREPMSVLPAFGILLGSAALIWLGVIML*
INPhiseqgaiiFebDRAFT_1046953301	3300000364	Soil	VHYLAPIPIIIGVFGAIVAILWLVAAGSDKDGGPEASLFFLFGTWYIGMRVLKALINEPMSVLPACGIMLVSAALIWLGIAML*
INPhiseqgaiiFebDRAFT_1050136322	3300000364	Soil	MHYVAPIPIMFGAVGAIVGILWLVAAGSDKDGGPELGLFYLFGMWYIVIRVFKALSDEPMSVLPAXGILIVSAGLIWVGIXML*
A2065W1_100419482	3300001537	Permafrost	MHYVAPIPIILGVIGAIVGLLWLVAAGSDNDGGPDTSLFFLFGMWYLAMRVLKALFSEPMSVLPAFGILLGSAALIWLGIVML*
Ga0062593_1024739861	3300004114	Soil	VHYVAPIPIILGVVGAIVGLLWLVAAGSDEDGGPEKSLFFLFGAWYIGMRVMKALFREPMSVLPGFGILLGSAALIWLGVIML*
Ga0063455_1005838292	3300004153	Soil	MHYLAPFPIIIGVVGVITGVVWLIAAGSEDDGGPDTGLFYVFGMLYVSLRVMKQLFSEPMSVLPAFAILLGSGALIWLGIAML*
Ga0063356_1032532791	3300004463	Arabidopsis Thaliana Rhizosphere	MHYLAPFPIIIGVVGMIAGLLWLVAAGSDEDGGPDTGLFFLFGWWYIAIRVLKALSRDPMSVLPAFGILLGGAALIGLGIIML*
Ga0070658_115009811	3300005327	Corn Rhizosphere	MGRGTNLWGDVHYLAPFPIMFGVVGAIIGFLWLVAAGSEGDGGPEPGLFFIFGMGYIWLRVLRELISEPMNVLPGIGILVGSLGLIWLGYVMW*
Ga0070683_1008146841	3300005329	Corn Rhizosphere	MHFLAPFPIMFGVIGAIVGILWLVAAGSDKDGGPEPNLFFVFGMWYIFVRVLKALADEPMSVLPAFGILIVSAGLIWVGVVML*
Ga0070690_1012363941	3300005330	Switchgrass Rhizosphere	VHHIAPIPIIFGVIGAIVGLLWLVAAGSEEDGGPETGLFFVFGIWYIGLRVLKQLAREPMSVLPAFGIL
Ga0068868_1007514951	3300005338	Miscanthus Rhizosphere	VHHIAPIPIIFGVIGAIVGLLWLVAAGSEEDGGPETGLFFVFGIWYIGLRVLKQLAREPMSVLPAFGILLGSAALIWLGIIML*
Ga0070687_1010502561	3300005343	Switchgrass Rhizosphere	MCHLIFHEMHYIAPMPIIFGVVGVIVGLLWLVAAGSDKDGGPETGLFYLFGSWYIGMRVMKQLFSDPMSVLPAFGILIGSAGLIWLGVAML*
Ga0070668_1002696642	3300005347	Switchgrass Rhizosphere	MHHVAPIPIIFGVVGAIVGLLWLVAAGSDEDGGPETGLFYVFGFWYIGVRVLKQLASDPMSVLPALGILIVSGGLIWLGIVML*
Ga0070675_1016831341	3300005354	Miscanthus Rhizosphere	MHYVAPIPIIFGVIGAIVGLLWLVAAGSEEDGGPDTGMFWLFGGWYIGLRVMKQLGRDPMSVLPAFGILIGSAGLIWLGVVML*
Ga0070671_1004078463	3300005355	Switchgrass Rhizosphere	VHHIAPIPIIFGVIGAIVGLLWLVAAGSEEDGGPETGLFFVFGIWYIGLRVLKQLAREPMSVLPAFGILLGSAALIWLG
Ga0070671_1008452572	3300005355	Switchgrass Rhizosphere	TFHEMHYIAPMPIIFGVVGVIIGLLWLVAAGSDKDGGPETGLFYLFGSWYIGMRVMKQLFSDPMSVLPAFGILIGSAGLIWLGVAML*
Ga0070714_1000209751	3300005435	Agricultural Soil	CAGSCPECELAGSVSGTMHYVAPVPIIVGVIGVIAGLLWLIAAGSEEDGGPDTGLFFLFGFWYIGTRVLKALVTEPMSVLPAFGILLISAGLIWLGIVML*
Ga0070739_104900781	3300005532	Surface Soil	MHYVAPIPIIIGVVGAIAGLLWLVAAGSEDDGGPDTGMFFLFGSWYLGARVMKALASDPMSVLPAFGILALSGGLIWLGIIML*
Ga0068853_1013670282	3300005539	Corn Rhizosphere	MHYLAPLPIMLGVVGLIVGFMWLVAAGSEEDGGPDTTFFFLFGSWYLMLRVMKALMNDPMSVLPAFGILIGSGGL
Ga0070665_10000543611	3300005548	Switchgrass Rhizosphere	MPGVAFRLMHYIAPIPIIAGVIGVIVAVMWLVAAGSENDGGPDTSLFFLFGWWYIGMRVLKELTRDPMSILPAFGILLGGAGLIWLGVVML*
Ga0068857_1001959434	3300005577	Corn Rhizosphere	MHFLAPFPIMFGVIGAIVGILWLVAAGSDKDGGPEPNLFFVFGMWYIFVRVLKALADEPMSVLPAFGILIVSAGLIWVGV
Ga0068854_1002867103	3300005578	Corn Rhizosphere	MIGVLGVICGLLWLFAVGSEEDGGPDSALFFVFGMLYIGARVMKALVDEPMSVLPAFGILVGSAGLIWLGVWMW*
Ga0066654_102473681	3300005587	Soil	MHYIAPIPIIFGIVGAIVGLLWLIAAGSEEDGGPESGLFYLFGMWYIGMRVMKQLAREPMSVLPAFGILLGSAGLIWVGIIML*
Ga0068856_1026866912	3300005614	Corn Rhizosphere	LSCINMHYLAPFPIMIGVLGVICGLLWLFAVGSEEDGGPDSALFFVFGMLYIGARVMKALVDEPMSVLPAFGILVGSAGLIWLGVWMW*
Ga0068859_1014064932	3300005617	Switchgrass Rhizosphere	PIIFGVIGAIVGLLWLVAAGSEEDGGPETGLFFVFGIWYIGLRVLKQLAREPMSVLPAFGILLGSAALIWLGIIML*
Ga0068859_1023633513	3300005617	Switchgrass Rhizosphere	RARVNPCPPRICHLIFHEMHYIAPMPIIFGVVGVIIGLLWLVAAGSDKDGGPETGLFYLFGSWYIGMRVMKELFSDPMSVLPAFGILIGSAGLIWLGVAML*
Ga0068864_1011541622	3300005618	Switchgrass Rhizosphere	MHHIAPIPIIFGVIGAIFGLLWLASVGSDEDGGPSQGLFFAFGIWYIAARVMKGLFRDPMSVLPAFGILLASGLLIWLGIVML*
Ga0068864_1021606972	3300005618	Switchgrass Rhizosphere	VHHIAPIPIIFGIIGAIVGLLWLDAAGSEEDGGPETGLFFVFGIWYIGLRVLKQLAREPMSVLPAFGILLGSAALIWLGIIML*
Ga0068863_1003079942	3300005841	Switchgrass Rhizosphere	MHYIAPIPIIAGVIGVIVAVMWLVAAGSENDGGPDTSLFFLFGWWYIGMRVLKELTRDPMSILPAFGILLGGAGLIWLGVVML*
Ga0068858_1022376721	3300005842	Switchgrass Rhizosphere	LAPFPIMFGVIGAIVGILWLVAAGSDKDGGPEPNLFFLFGMWYILLRVLKALSDEPMSVLPAFGILIVSAGLIWVGIVML*
Ga0068862_1010389722	3300005844	Switchgrass Rhizosphere	MHYVAPIPIIIGVVGVAAGLLWLVAAGSDEDGGPDTGLFFLFGATYIGMRVLKQLASDPMSVLPAFGILLGGGALIWLGILML*
Ga0070717_100590932	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MHYIAPIPIIVGVIGAVAGLLWLVAAGSEEDGGPDTGLFFLFGVWYVGMRVLKALADEPMSVLPAFGILLVSAGLIWLGIVML*
Ga0075030_1006672972	3300006162	Watersheds	LSAARRTMHYIAPIPIIFGVIGVIVGLLWLVVAGSEGDGGPDLGLLFIFGRIYLLFRVSRLLFTEPMSVLPAFGILLVGAALIWLGILML*
Ga0075421_1015105872	3300006845	Populus Rhizosphere	MHHVAPIPIILGVIGAIAGLLWLVAVGSDEDGGPDSGLFFFFGASYIAMRVCKAMVREPMSVLPAFGILLVSAALIWVGIVML*
Ga0075421_1016332572	3300006845	Populus Rhizosphere	MHYVAPIPIIIGVVGVVAGLLWLVAAGSDEDGGPDSGLFFLFGAMYIGMRVLKQLASDPMSVLPAFGILLGGAGLIWLGIVML*
Ga0075430_1003668972	3300006846	Populus Rhizosphere	MHYIAPIPIIIGVVGVVAGLLWLVAAGSDEDGGPDSGLFFLFGAMYIGMRVLKQLASDPMSVLPAFGILLGGAGLIWLGIVML*
Ga0075431_1003928323	3300006847	Populus Rhizosphere	MHYIAPIPIIIGVVGVVAGLLWLVAAGSDDDGGPDSGLFFLFGAMYIGIRVLKQLASDPMSVLPAFGILLGGAGLIWLGIVML*
Ga0075420_1001578973	3300006853	Populus Rhizosphere	MHYIAPIPIIIGVVGVVAGLLWLVAAGSDEDGGPDSGLFFLFGAMYIGIRVLKQLASDPMSVLPAFGILLGGAGLIWLGIVML*
Ga0075425_1005428533	3300006854	Populus Rhizosphere	MHYIAPIPIIFGVAGAIVGLIWLVAAGSDEDGGPQEGLFYLFGVLYIGIRVIKQLSREPMSVLPAFGILLGSAALIWLGIKML*
Ga0079216_110544781	3300006918	Agricultural Soil	MHYIAPIPIIIGIVGVIVGLLWLFAAGSEEDGGPSTGLFYVFGMMYIGIRVLKQLARDPMSVLPAFGILLGGGALIWLGILML*
Ga0075419_104201772	3300006969	Populus Rhizosphere	MHYIAPIPIIIGVVGVVAGLLWLVAAGSDEDGGPDSGLFFLFGAMYIGIRVLKQLASDPMSVLPAFGILLGGAGLIWVGIVML*
Ga0079218_102143183	3300007004	Agricultural Soil	VHHVAPIPIIFGGIGVIVGLLWLVAAGSEEDGGPSTGLFFAFGSLYVVVRVVRQLFREPMSVLPAFGILLGGAALIWLGIVML*
Ga0079218_109937302	3300007004	Agricultural Soil	MHYVAPIPIIFGVTGAIVGLLWLVAAGSDKDGGPDTSLFFLFGTWYIGVRVMKALFNEPMTVLPAFGILLASAGLIWLGIVML*
Ga0079218_120236101	3300007004	Agricultural Soil	MHHIAPIPIILGIAGVIVGFLWLVAAGSDDDGGPNSGLFFVFGAWYIGMRVTKALFRDPMSVLPAFGLLLGGAALIWLGVVML*
Ga0079218_138100101	3300007004	Agricultural Soil	MHYVAPIPIIIGVVGAIAGLLWLVAAGSDEDGGPNTSLFFLFGEWYITMRVFKALLREPMSVLPAFGILLGSAALI
Ga0066710_1045515351	3300009012	Grasslands Soil	YAAPIPIILGVIGAIAGLVWLVAAGSDDDGGPDSGLLFLFGAWYISIRVLKALFNDPMSVLPAFGILLASAALIWAGIVML
Ga0105240_103728573	3300009093	Corn Rhizosphere	MHYLAPFPIMIGVLGVICGLLWLFAVGSEEEGGPDSALFFVFGMLYIGARVMKALVDEPMSVLPAFGILVGSAGLIWLGVWMW*
Ga0111539_110357542	3300009094	Populus Rhizosphere	MHYVAPIPIIFGVIGAIVGLLWLVAAGSEEDGGPDTGMFWLFGGWYIGMRVMKQLGRDPMSVLPAFGILIGSAGLIWLGVVML*
Ga0105245_100134949	3300009098	Miscanthus Rhizosphere	MHYIAPIPIMFGVIGAIIGILWLVAAGSDKDGGPDTGLFFLFGTWYLMIRVLKALTDDPMSVLPAFGILILSGGLIWVGVVML*
Ga0075418_125835411	3300009100	Populus Rhizosphere	MHYLAPIPIIVGVIGAIAGLIWLVAAGSDEDGGPDTGILRVFGMGYVALRVLKQLFSDPMSVLPAFAILLGSGGLIWLGIAML*
Ga0066709_1006758641	3300009137	Grasslands Soil	MHYVAPMPIIIGVVGVIFGFLWLVSAGSDEDGGPNSGLFFLFGVWYIGMRVMKQLFREPMSVLPAFGFLIGGAGLIWLGVKML*
Ga0105243_121209172	3300009148	Miscanthus Rhizosphere	MFGVIGAIVGILWLVAAGSDKDGGPEVGLFYLFGMWYIFLRVLKALSDEPMSVLPAFGILIVSAGLIWLGVVML*
Ga0105243_129699591	3300009148	Miscanthus Rhizosphere	MHYIAPMPIIFGVVGVIIGLLWLVAAGSDKDGGPETGLFYLFGSWYIGMRVMKQLFSDPMSALPAFGILIGSAGLIWLGVAML*
Ga0105241_119636972	3300009174	Corn Rhizosphere	MHYIAPIPIIFGVVGAIVGILWLVAAGSDKDGGPDSGLFFLFGMWYIVIRILKALSSEPMTVLPAFGILLGSAGLIWLGVVML*
Ga0105241_126484491	3300009174	Corn Rhizosphere	MHYLAPFPIMIGVRGVICGLLWLFAVGSEEDGGPDSALFFVFGMLYIGARVMKALVDEPMSVLPAFGILVGSAGLIWLGVWMW*
Ga0105248_133996911	3300009177	Switchgrass Rhizosphere	MHYLAPFPIMFGVIGAIVGILWLVAAGSDKDGGPETGLFYLFGMWYIGLRVLKALSDEPMSVLPAFGILIVSAGLIWVGIVML*
Ga0114951_1000023139	3300009502	Freshwater	VHYLAPFPIIFGVFGIILGLMWLVAAGSDEDGGPDTNMLFVFGRIYIAIRVIKALIREPMSVLPAFGILLISIALIWLGIVML*
Ga0105237_105794762	3300009545	Corn Rhizosphere	MHYLAPLPIMLGVVGVIVGFMWLVAAGSEEDGGPDTTFFFLFGSWYLMLRVMKALMNDPMSVLPAFGILIGSGGLVWLGIKMI*
Ga0105237_114954511	3300009545	Corn Rhizosphere	LSATMHYLAPFPIMFGVIGAIVGILWLVAAGSDKDGGPETGLFYLFGMWYIGLRVLKALSDEPMSVLPAFGILIVSAGLIRVGIVML*
Ga0126314_110130631	3300010042	Serpentine Soil	MHYIAPIPIILGVVGAIAGLLWLVTAGSEDDGGPDTRIFRIFGFLHIALRVLKSLISDPMSVLPAFGILVVSAALIRVGIVML*
Ga0126310_114023501	3300010044	Serpentine Soil	MHYIAPIPIIIGICGVIVGLLWLFAAGSDEDGGPSSGLFFLFGGMYIAVRVLKQLGRDPMSVLPALGILLGGALLI
Ga0126306_115882562	3300010166	Serpentine Soil	IIVGVFGVVAGLLWLVAAGSEDDGGPSTGLFYVFGMIYLTHRVLKQLAKDPMSVLPAFGILAGGAGLIWLGVVIL*
Ga0105239_104485641	3300010375	Corn Rhizosphere	MLGVVGLIVGFMWLVAAGSEEDGGPDTTFFFLFGSWYLMLRVMKALMNDPMSVLPAFGILIGSGGLVWLGIKMI*
Ga0105239_117710741	3300010375	Corn Rhizosphere	MHYLAPFPIMFGVIGAIVGILWLVAAGSDKDGGPEPNLFFLFGMWYILLRVLKALSDEPMSVLPAFGILIVSAGLIWVGIVML*
Ga0137362_105970312	3300012205	Vadose Zone Soil	MHYIAPIPIIFGVAGAIVGLLWLSAAGSNEDGGPDVSLFFLFGIWYIGMRVLKALFSEPMSVLPAFGILLGSAGLIWLGVVML*
Ga0150985_1208481001	3300012212	Avena Fatua Rhizosphere	MHYVAPIPIIFGVVGAIVGILWLVSAGSEDDGGPDKSLFFVFGLLYIGLRVLKALFSEPTSVLPAFGILIASAGLIWLGVVML*
Ga0153880_13738482	3300012411	Freshwater Sediment	APFPIIFGVFGIILGLMWLVAAGSDEDGGPDTNMLFVFGRIYIAIRVIKALIREPMSVLPAFGILLISIALIWLGIVML*
Ga0150984_1074403002	3300012469	Avena Fatua Rhizosphere	MHYIAPIPIIFGVVGVIAGLLWLVAAGSDDDGGPDQGMFFLFGTWYIALRVLKQLFSEPMNVLPAFGILLGSGVLIWLGIKML*
Ga0150984_1132831562	3300012469	Avena Fatua Rhizosphere	PFPIMFGVIGAIVGILWLVAAGSDKDGGPEPNLFFVFGMWYIFVRVLKALADEPMSVLPAFGILIVSAGLIWVGIVML*
Ga0150984_1207594572	3300012469	Avena Fatua Rhizosphere	PIIFGVVGAIVGILWLVSAGSEDDGGPDKSLFFVFGLLYIGLRVLKALFSEPTSVLPAFVILIASAGLIWLGVVML*
Ga0164307_110337452	3300012987	Soil	MHYLAPIPIIFGVVGAIAGILWLVSAGSEEDGGPDKGLFYVFGLLYIGIRVLKALFSEPMSVLPAFAILLASAGLIWLGVVML*
Ga0157370_104308862	3300013104	Corn Rhizosphere	MHYLAPFPIIFGVVGVIVGLLWLVAAGSENNGGPSTGLYYAFGMLYIGIRVTKQLMSEPMSVLPAFGFVIGGAALIWLGVIML*
Ga0157369_108045302	3300013105	Corn Rhizosphere	MHYIAPFPIIFGVVGAIVGVLWLIAAGSDKDGGPDTNLFFLFGSWYIGVRVMKALFNDPMSVLPAFGILAASAGLIWLGVVML*
Ga0157374_108187372	3300013296	Miscanthus Rhizosphere	MHYIAPFPIIFGVVGAIVGVLWLIAAGSDKDGGPDTSLFFLFGSWYIGVRVMQALFNDPMSVLPAFGILAASAGLIWLGVVML*
Ga0157374_116300401	3300013296	Miscanthus Rhizosphere	MHYLAPLPIMLGVVGLIVGFMWLVAAGSEEDGGPDTTFFFLFGSWYLMLRVMKALMNDPMSVLPAFGILIGSGGLIWLGVKMI*
Ga0157372_106424501	3300013307	Corn Rhizosphere	MHYLAPFPIMIGVLGVICGLLWLFAVGSEEDGGPDSALFFVFGMLYIGARVMKALVDEPMSVLPAFGILVGSAGLI
Ga0157372_107918452	3300013307	Corn Rhizosphere	MHYIAPIPIIIGVIGAIGGLLWLIAAGSDQHGGPDTGLFFVFGFWYIAVRVVKAFADDPMSVLPAFGILLVSGGLIWLGVVML*
Ga0163163_125047911	3300014325	Switchgrass Rhizosphere	RPFRSTRDLAVARIEPMHYIAPIPIILGVGGVIVGLLWLVAAGSDEDGGPSQGLFFAFGIWYIAARVMKGLFRDPMSVLPAFGILLASGLLIWLGIVML*
Ga0182024_111333711	3300014501	Permafrost	MHYLAPLPIIIGVIVAIVGLLWLVAAGSENDGGPEPGLFFIFGIWYLVLRVVKALLSDPMSILPAFGILLGSAGLIWLGVVMY*
Ga0182027_122262202	3300014839	Fen	APFPIIIGVVGVITGLFWLVGAGADEDGGPSTGLFYVFGWLYIGIRVFKQLCRDPMSVLPAFGILLASAVLIWLGIVML*
Ga0157376_101914883	3300014969	Miscanthus Rhizosphere	MHYLARFPIMIGGLGVICGLLWLFAAGAEEDGGPDSTMFTVFGMGYIMMRVMREFMRDPMSVLPAFGILAGSAGLIWLGWVMW*
Ga0157376_127761891	3300014969	Miscanthus Rhizosphere	MHYIAPFPIIIGVGGAIVAFLWLIAAGSDDDGGPEKGLFFLFGFLYIGLRVLKQLFREPMSVLPAFGILLGSAALIWVGAKML*
Ga0132258_123170782	3300015371	Arabidopsis Rhizosphere	MHYLAPFPIIIGVVGAITGLVWLVAAGSDEDGGPDTGLFYVFGMLYVSLRVMKQLFSEPMSVLPAFAILLGSGALIWLGIVML*
Ga0163161_120852611	3300017792	Switchgrass Rhizosphere	MCHLIFHEMHYIAPMPIIFGVVGVIIGLLWLVAAGSDKDGGPETGLFYLFGSWYIGMRVMKQLFSDPMSVLPAFGILIGSAGLIWLGVAML
Ga0066669_110268862	3300018482	Grasslands Soil	MHYIAPIPIIFGIFGAILGLLWLVGAGSEEDGGPEKSLFFLFGTWYIGIRVMKQLFREPMSVLPAFGILLGSALLIWLGIVML
Ga0182009_100512914	3300021445	Soil	LHHLAPIPIILGVIGAVAGVVWLVAAGSDEDGGPDSNVFFAFGALYIALRVLKTLVREPMSVLPAFGILLISAALIWLGVAML
Ga0212088_10000035111	3300022555	Freshwater Lake Hypolimnion	VHYLAPFPIIFGVFGIILGLMWLVAAGSDEDGGPDTNMLFVFGRIYIAIRVIKALIREPMSVLPAFGILLISIALIWLGIVML
Ga0179591_10942462	3300024347	Vadose Zone Soil	MHYVAPIPIMLGVLGAIVGILWLVAAGSDKDGGPETGLFYLFGMWYIVIRVLKALSSEPMSVLPAFGILIVSAVLIWVGIVML
Ga0207680_111743531	3300025903	Switchgrass Rhizosphere	QHVHHIAPIPIIFGVIGAIVGLLWIVAAGSEEDGGPETGLFFVFGIWYIGLRVLKQLAREPMSVLPAFGILLGSAALIWLGIIML
Ga0207671_111772641	3300025914	Corn Rhizosphere	LGVVGLIVGFMWLVAAGSEEDGGPDTTFFFLFGSWYLMLRVMKALMNDPMSVLPAFGILIGSGGLVWLGIKMI
Ga0207687_1000720210	3300025927	Miscanthus Rhizosphere	MHYIAPIPIMFGVIGAIIGILWLVAAGSDKDGGPDTGLFFLFGTWYLMIRVLKALTDDPMSVLPAFGILILSGGLIWVGVVML
Ga0207664_101386443	3300025929	Agricultural Soil	CPECELAGSVSGTMHYVAPVPIIVGVIGVIAGLLWLIAAGSEEDGGPDTGLFFLFGFWYIGTRVLKALVTEPMSVLPAFGILLISAGLIWLGIVML
Ga0207644_106661361	3300025931	Switchgrass Rhizosphere	VHHIAPIPIIFGVIGAIVGLLWLVAAGSEEDGGPETGLFFVFGIWYIGLRVLKQLAREPMSVLPAFGILLGSAA
Ga0207661_114275381	3300025944	Corn Rhizosphere	MHFLAPFPIMFGVIGAIVGILWLVAAGSDKDGGPEPNLFFVFGMWYIFVRVLKALADEPMSVLPAFGILIVSAGLIWVGVVML
Ga0207667_107750602	3300025949	Corn Rhizosphere	MIGVLGVICGLLWLFAVGSEEDGGPDSALFFVFGMLYIGARVMKALVDEPMSVLPAFGILAGSAGLIWLGVWMW
Ga0207668_112456451	3300025972	Switchgrass Rhizosphere	MHHVAPIPIIFGVVGAIVGLLWLVAAGSDEDGGPETGLFYVFGFWYIGVRVLKQLASDPMSVLPALGILIVSGGLIWLGIVML
Ga0207677_110587651	3300026023	Miscanthus Rhizosphere	AVHYVAPIPIILGVVGAIVGLLWLVAAGSDDDGGPEKSLFFLFGAWYIGMRVVKALFRDPMSVLPAFGILLGSGALIWLGVIML
Ga0207677_116408071	3300026023	Miscanthus Rhizosphere	VHHIAPIPIIFGVIGAIVGLLWLVAAGSEEDGGPETGLFFVFGIWYIGLRVLKQLAREPMSVLPAFGILLGSAALIWLGIIML
Ga0207702_122587271	3300026078	Corn Rhizosphere	LSCINMHYLAPFPIMIGVLGVICGLLWLFAVGSEEDGGPDSALFFVFGMLYIGARVMKALVDEPMSVLPAFGILVGSAGLIWLGVWMW
Ga0207641_102116572	3300026088	Switchgrass Rhizosphere	MPGVAFRPMHYIAPIPIIAGVIGVIVAVMWLVAAGSENDGGPDTSLFFLFGWWYIGMRVLKELTRDPMSILPAFGILLGGAGLIWLGVVML
Ga0207698_112827412	3300026142	Corn Rhizosphere	MFGVIGAIVGILWLVAAGSDKDGGPEVGLFYLFGMWYIFLRVLKALSDEPMSVLPAFGILIVSAST
Ga0209131_11812123	3300026320	Grasslands Soil	MHYIAPIPIIFGVVGAIVGILWLVAAGSDKDGGPDTGLFFLFGMWYIVIRVLKALSSEPMSVLPAFGILLGSAALIWVGIVML
Ga0209450_1000003649	3300027885	Freshwater Lake Sediment	MHYIAPIPIILGVVGVIVGLFWLVAAGSDKDGGPSVGLFSIFGMWYVALRVMKQLASDPMSVLPAFGFLAGGAGLIALGVIMR
Ga0209486_104562822	3300027886	Agricultural Soil	VHHVAPIPIIFGGIGVIVGLLWLVAAGSEEDGGPSTGLFFAFGSLYVVVRVVRQLFREPMSVLPAFGILLGGAALIWLGIVML
Ga0209382_103305772	3300027909	Populus Rhizosphere	MHYIAPIPIIIGVVGVVAGLLWLVAAGSDEDGGPDSGLFFLFGAMYIGMRVLKQLASDPMSVLPAFGILLGGAGLIWVGIVML
Ga0209382_122937602	3300027909	Populus Rhizosphere	MHHVAPIPIILGVIGAIAGLLWLVAVGSDEDGGPDSGLFFFFGASYIAMRVCKAMVREPMSVLPAFGILLVSAALIWVGIVML
Ga0209698_106015112	3300027911	Watersheds	LSAARRTMHYIAPIPIIFGVIGVIVGLLWLVVAGSEGDGGPDLGLLFIFGRIYLLFRVSRLLFTEPMSVLPAFGILLVGAALIWLGILML
Ga0268266_100045398	3300028379	Switchgrass Rhizosphere	MPGVAFRLMHYIAPIPIIAGVIGVIVAVMWLVAAGSENDGGPDTSLFFLFGWWYIGMRVLKELTRDPMSILPAFGILLGGAGLIWLGVVML
Ga0268266_102598872	3300028379	Switchgrass Rhizosphere	MHYLAPFPIMIGGLGAICGLLWLVAAGSEDDGGPDSSMFSIFGMGYIMMRVMREFTRDPMSVLPAFGILAGSGVLIWLGWLMW
Ga0302301_10715312	3300028731	Palsa	MHHIAPIPIIFGVFGVVFGLLWLVAAGSDKDGGPETSLFFLFGMWYIGMRVLKALFNEPMSVLPAFGILLGSAALICLGVLML
Ga0302181_102492422	3300030056	Palsa	MHHIAPIPIIFGVFGVVFGLLWLVAAGSDKDGGPETSLFFLFGMWYIGMRVLKALFNEPMSVLPAFGILLGSAALI
Ga0302309_100166541	3300030687	Palsa	HHIAPIPIIFGVFGVVFGLLWLVAAGSDKDGGPETSLFFLFGMWYIGMRVLKALFNEPMSVLPAFGILLGSAALICLGVLML
Ga0299913_108192221	3300031229	Soil	MHYVAPIPILIGIAGVIVGLLWLVAAGSDEDGGPSTGLFYAFGGLYIGIRVLKQLARDPMSVLPAFGLLLAGAALIWLGVVML
Ga0307408_1003287342	3300031548	Rhizosphere	MHHIAPIPIIFGAIGVIVGLLWLVAAGSDEDGGPDTSLFFLFGAWYVGVRVMKALFREPMSVLPAFGILLGSAGLIWLGIVML
Ga0310686_10737352612	3300031708	Soil	MHYIAPIPIILGVVGVIAGFLWLVTAASEEGGSQISMPFVGRIFLLYRVLKALATDPMSVRPAFGILLVSAALIWVGVHML
Ga0307476_100039765	3300031715	Hardwood Forest Soil	MHYIAPIPIILGVMGAIAGLLWLVAAGSEEDGGPQTGLFFSFGRIYLMFRVLKALFADPMSVLPAFGILLVSAALIWLGVIML
Ga0307405_115426721	3300031731	Rhizosphere	MHYVAPIPIIIGVVGVVAGLLWLVAAGSDEDGGPNSGLFFLFGAMYIATRVLKQLGRDPMSVLPAFGLLLGGAALIWLGVVML
Ga0308174_101267851	3300031939	Soil	MHYLAPIPIIIGVFGAIMGLMWLVAAGADDDGGPEAGLFFLFGSWYIGLRVMKALVREPMSVLPAFGILIG
Ga0307409_1013555751	3300031995	Rhizosphere	MKFFDPFACRKLISGTMHYVAPIPIILGVVGAIAGLVWLVAAGSDDDGGPDSGMFFLFGALYIGIRVLKALFNEPMSVLPAFGILILSAGLIWAGIVML
Ga0307409_1026740312	3300031995	Rhizosphere	MHYVAPIPIILGVVGAIAGLLWLFAAGSDEDGGPDRGLFFVFGLLYIGLRVLKALVSDPMSVLPAFGLLVVSAALIWVGIAML
Ga0307414_114177402	3300032004	Rhizosphere	MLHFLAPFPIVIGVCGALVGLLWLVAAGSEEDGGPEPGLFYVFGLWYIALRVFKALLDEPMSVLPAFGILLGS
Ga0308173_100783244	3300032074	Soil	MHYLAPIPIIIGVFGAIMGLMWLVAAGADDDGGPEAGLFFLFGSWYIGLRVMKALVREPMSVLPAFGILIGSAALIWLGIIML
Ga0308173_113799151	3300032074	Soil	MHYLAPFPIIIGVVGAVAGVVWLVAAGSDEDGGPDSNLFFLFGAWYVAMRVLKALFNDPMSVLPAFGILVVSAALIWVGVAML
Ga0335074_1000055638	3300032895	Soil	MHYIAPIFIICGGIGAIAGLLWLVAAGSDNDGGPDTGLFFLFGVWYIGVRVLKALISEPMSVLPAFGILLVSAAMIWLGVVML
Ga0335074_110756691	3300032895	Soil	GAQRGSTHAPPLLFSAMHDLAPLPTIIGLIGVLAGLLWLIAAGSANDGGPEPGLFFVFGIWYIALRVLKSLFSDPMSVLPALGILLGSAALIGLGVVMY
Ga0335073_108901841	3300033134	Soil	MHYIAPIPIMFGVVGVVVGYLWLVAAGSEEDGGPQVGLFFIFGRIYVFFRVLKALITDPMSVLPAFGILLVSAALI
Ga0372946_0293075_378_629	3300034384	Soil	MHYLAPFPIIVGVVGAIAGLLWLVAAGSEEDGGPDTGLFFLFGAWYIVMRVLKALASDPMSVLPAFGILLGSAGLIWLGIVML

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065505

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences