Metagenome / Metatranscriptome Family F065144

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065144
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	43 residues
Representative Sequence	MATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEITLGYTGD
Number of Associated Samples	112
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	59.84 %
% of genes near scaffold ends (potentially truncated)	98.44 %
% of genes from short scaffolds (< 2000 bps)	93.75 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.531 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.281 % of family members)
Environment Ontology (ENVO)	Unclassified (39.844 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (36.719 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 13.64% Coil/Unstructured: 86.36%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF00589	Phage_integrase	5.47
PF01548	DEDD_Tnp_IS110	1.56
PF00665	rve	1.56
PF00248	Aldo_ket_red	0.78
PF13586	DDE_Tnp_1_2	0.78
PF13470	PIN_3	0.78
PF13340	DUF4096	0.78
PF00239	Resolvase	0.78
PF13565	HTH_32	0.78
PF01638	HxlR	0.78
PF00196	GerE	0.78
PF02322	Cyt_bd_oxida_II	0.78
PF02796	HTH_7	0.78
PF12680	SnoaL_2	0.78
PF00491	Arginase	0.78
PF11225	DUF3024	0.78
PF00069	Pkinase	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.12
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	1.56
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	1.56
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	1.56
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.56
COG4584	Transposase	Mobilome: prophages, transposons [X]	1.56
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.78
COG1294	Cytochrome bd-type quinol oxidase, subunit 2	Energy production and conversion [C]	0.78
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.78
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.78
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.53 %
All Organisms	root	All Organisms	30.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.53 %
cellular organisms	root	All Organisms → cellular organisms	30.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.53 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.53 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	22.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.53 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.53 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.53 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	5.47 %
Jiangellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales	0.78 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.78 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.78 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.78 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.78 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.53 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	3.91 %
Jiangellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae	0.78 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.78 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.78 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.78 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.78 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.78 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.53 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	3.91 %
Phytoactinopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Phytoactinopolyspora	0.78 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.78 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.78 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.78 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	0.78 %
Leifsonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia	0.78 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.53 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.91 %
Nonomuraea solani	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea solani	0.78 %
unclassified Leifsonia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia → unclassified Leifsonia	0.78 %
unclassified Kribbella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella	0.78 %
unclassified Amycolatopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis	0.78 %
Phytoactinopolyspora limicola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Phytoactinopolyspora → Phytoactinopolyspora limicola	0.78 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.78 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.53 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.91 %
Kribbella sp. VKM Ac-2575	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2575	0.78 %
Leifsonia sp. Root227	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia → unclassified Leifsonia → Leifsonia sp. Root227	0.78 %
Amycolatopsis sp. FDAARGOS 1241	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	0.78 %
Nonomuraea solani	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea solani	0.78 %
Phytoactinopolyspora limicola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Phytoactinopolyspora → Phytoactinopolyspora limicola	0.78 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.78 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004153\|Ga0063455_101226354	Not Available	565	Open in IMG/M
3300004633\|Ga0066395_10034717	All Organisms → cellular organisms → Bacteria	2131	Open in IMG/M
3300005363\|Ga0008090_14987112	Not Available	569	Open in IMG/M
3300005467\|Ga0070706_100514404	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300005471\|Ga0070698_100247519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1715	Open in IMG/M
3300005471\|Ga0070698_100389507	Not Available	1326	Open in IMG/M
3300005616\|Ga0068852_100885985	Not Available	909	Open in IMG/M
3300005713\|Ga0066905_101879083	Not Available	554	Open in IMG/M
3300006028\|Ga0070717_11514181	Not Available	608	Open in IMG/M
3300006046\|Ga0066652_102070311	Not Available	505	Open in IMG/M
3300006059\|Ga0075017_100785021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	735	Open in IMG/M
3300006163\|Ga0070715_10835808	Not Available	562	Open in IMG/M
3300006175\|Ga0070712_100818538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	800	Open in IMG/M
3300006175\|Ga0070712_101898599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300006852\|Ga0075433_10303373	Not Available	1414	Open in IMG/M
3300006854\|Ga0075425_102316637	Not Available	597	Open in IMG/M
3300006904\|Ga0075424_100351229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1571	Open in IMG/M
3300006954\|Ga0079219_10792104	Not Available	743	Open in IMG/M
3300009089\|Ga0099828_11422153	Not Available	612	Open in IMG/M
3300009698\|Ga0116216_10455691	Not Available	774	Open in IMG/M
3300009824\|Ga0116219_10251409	Not Available	1003	Open in IMG/M
3300009839\|Ga0116223_10222510	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300010396\|Ga0134126_10481218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	1433	Open in IMG/M
3300012206\|Ga0137380_10146033	All Organisms → cellular organisms → Bacteria	2157	Open in IMG/M
3300012354\|Ga0137366_10028699	All Organisms → cellular organisms → Bacteria	4322	Open in IMG/M
3300012356\|Ga0137371_10628847	Not Available	823	Open in IMG/M
3300012363\|Ga0137390_10172788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2148	Open in IMG/M
3300012515\|Ga0157338_1059879	Not Available	569	Open in IMG/M
3300012925\|Ga0137419_10659914	Not Available	845	Open in IMG/M
3300012929\|Ga0137404_11170183	Not Available	707	Open in IMG/M
3300012948\|Ga0126375_10187610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1344	Open in IMG/M
3300012958\|Ga0164299_10358287	Not Available	921	Open in IMG/M
3300014838\|Ga0182030_11577487	Not Available	538	Open in IMG/M
3300014968\|Ga0157379_11487718	Not Available	658	Open in IMG/M
3300016422\|Ga0182039_10702249	Not Available	892	Open in IMG/M
3300016445\|Ga0182038_11107184	Not Available	704	Open in IMG/M
3300017821\|Ga0187812_1015290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2651	Open in IMG/M
3300017821\|Ga0187812_1141554	Not Available	776	Open in IMG/M
3300017926\|Ga0187807_1193881	Not Available	657	Open in IMG/M
3300017928\|Ga0187806_1022167	Not Available	1846	Open in IMG/M
3300017928\|Ga0187806_1093304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	955	Open in IMG/M
3300017942\|Ga0187808_10006882	All Organisms → cellular organisms → Bacteria	4339	Open in IMG/M
3300017943\|Ga0187819_10520696	Not Available	677	Open in IMG/M
3300017946\|Ga0187879_10311823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea solani	873	Open in IMG/M
3300017955\|Ga0187817_10252461	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300017959\|Ga0187779_10525573	All Organisms → cellular organisms → Bacteria → Terrabacteria group	785	Open in IMG/M
3300017961\|Ga0187778_10397409	Not Available	904	Open in IMG/M
3300018007\|Ga0187805_10170645	Not Available	991	Open in IMG/M
3300018043\|Ga0187887_10084376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1922	Open in IMG/M
3300018058\|Ga0187766_11000034	Not Available	595	Open in IMG/M
3300018085\|Ga0187772_10809096	Not Available	677	Open in IMG/M
3300018482\|Ga0066669_11158045	Not Available	698	Open in IMG/M
3300019789\|Ga0137408_1243148	Not Available	730	Open in IMG/M
3300020580\|Ga0210403_10688377	Not Available	820	Open in IMG/M
3300020583\|Ga0210401_11075530	Not Available	663	Open in IMG/M
3300021178\|Ga0210408_11058451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	626	Open in IMG/M
3300021407\|Ga0210383_10217976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1634	Open in IMG/M
3300021432\|Ga0210384_11400476	Not Available	604	Open in IMG/M
3300021475\|Ga0210392_10854495	Not Available	680	Open in IMG/M
3300021478\|Ga0210402_11450554	Not Available	613	Open in IMG/M
3300021479\|Ga0210410_10300752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1440	Open in IMG/M
3300021479\|Ga0210410_11336220	Not Available	609	Open in IMG/M
3300025898\|Ga0207692_10530580	Not Available	750	Open in IMG/M
3300025914\|Ga0207671_10642565	Not Available	845	Open in IMG/M
3300026078\|Ga0207702_11219583	Not Available	746	Open in IMG/M
3300027696\|Ga0208696_1256691	Not Available	542	Open in IMG/M
3300027775\|Ga0209177_10411586	Not Available	544	Open in IMG/M
3300027908\|Ga0209006_10885641	Not Available	718	Open in IMG/M
3300028906\|Ga0308309_10661616	Not Available	907	Open in IMG/M
3300029951\|Ga0311371_12230967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	570	Open in IMG/M
3300029999\|Ga0311339_10096823	All Organisms → cellular organisms → Bacteria	3662	Open in IMG/M
3300030617\|Ga0311356_11472751	Not Available	617	Open in IMG/M
3300031543\|Ga0318516_10273304	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300031543\|Ga0318516_10447379	Not Available	743	Open in IMG/M
3300031543\|Ga0318516_10555756	Not Available	657	Open in IMG/M
3300031543\|Ga0318516_10581033	Not Available	640	Open in IMG/M
3300031546\|Ga0318538_10725342	Not Available	539	Open in IMG/M
3300031561\|Ga0318528_10394990	Not Available	742	Open in IMG/M
3300031564\|Ga0318573_10166975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Phytoactinopolyspora → Phytoactinopolyspora limicola	1159	Open in IMG/M
3300031564\|Ga0318573_10262161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	922	Open in IMG/M
3300031679\|Ga0318561_10397617	Not Available	757	Open in IMG/M
3300031680\|Ga0318574_10270874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	984	Open in IMG/M
3300031680\|Ga0318574_10868563	Not Available	528	Open in IMG/M
3300031681\|Ga0318572_10409061	Not Available	807	Open in IMG/M
3300031708\|Ga0310686_119744414	Not Available	514	Open in IMG/M
3300031708\|Ga0310686_119855689	Not Available	674	Open in IMG/M
3300031713\|Ga0318496_10624078	Not Available	595	Open in IMG/M
3300031719\|Ga0306917_10492398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	962	Open in IMG/M
3300031723\|Ga0318493_10694543	Not Available	570	Open in IMG/M
3300031723\|Ga0318493_10758774	Not Available	545	Open in IMG/M
3300031747\|Ga0318502_11029773	Not Available	502	Open in IMG/M
3300031765\|Ga0318554_10354214	Not Available	834	Open in IMG/M
3300031771\|Ga0318546_10473785	Not Available	878	Open in IMG/M
3300031778\|Ga0318498_10227280	Not Available	844	Open in IMG/M
3300031792\|Ga0318529_10051691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1772	Open in IMG/M
3300031792\|Ga0318529_10172027	Not Available	1001	Open in IMG/M
3300031794\|Ga0318503_10195048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	656	Open in IMG/M
3300031798\|Ga0318523_10577235	Not Available	554	Open in IMG/M
3300031798\|Ga0318523_10653374	Not Available	517	Open in IMG/M
3300031819\|Ga0318568_10207012	Not Available	1211	Open in IMG/M
3300031832\|Ga0318499_10213000	Not Available	752	Open in IMG/M
3300031846\|Ga0318512_10666518	Not Available	532	Open in IMG/M
3300031860\|Ga0318495_10363605	Not Available	640	Open in IMG/M
3300031879\|Ga0306919_10577721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leifsonia → unclassified Leifsonia → Leifsonia sp. Root227	867	Open in IMG/M
3300031890\|Ga0306925_12102470	Not Available	529	Open in IMG/M
3300031910\|Ga0306923_11349710	Not Available	754	Open in IMG/M
3300031912\|Ga0306921_11881418	Not Available	641	Open in IMG/M
3300031942\|Ga0310916_11566577	Not Available	536	Open in IMG/M
3300031954\|Ga0306926_11127675	Not Available	926	Open in IMG/M
3300031954\|Ga0306926_12409015	Not Available	580	Open in IMG/M
3300032001\|Ga0306922_10716368	Not Available	1052	Open in IMG/M
3300032009\|Ga0318563_10127110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1360	Open in IMG/M
3300032044\|Ga0318558_10443042	Not Available	647	Open in IMG/M
3300032054\|Ga0318570_10460296	Not Available	580	Open in IMG/M
3300032054\|Ga0318570_10537863	Not Available	533	Open in IMG/M
3300032065\|Ga0318513_10184618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1002	Open in IMG/M
3300032066\|Ga0318514_10349437	Not Available	783	Open in IMG/M
3300032067\|Ga0318524_10466159	Not Available	661	Open in IMG/M
3300032068\|Ga0318553_10466197	Not Available	662	Open in IMG/M
3300032089\|Ga0318525_10251778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	908	Open in IMG/M
3300032261\|Ga0306920_102195529	Not Available	768	Open in IMG/M
3300032828\|Ga0335080_10969730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	868	Open in IMG/M
3300032954\|Ga0335083_10254580	Not Available	1568	Open in IMG/M
3300032955\|Ga0335076_10621917	Not Available	962	Open in IMG/M
3300033158\|Ga0335077_10399870	All Organisms → cellular organisms → Bacteria	1476	Open in IMG/M
3300033290\|Ga0318519_11041947	Not Available	509	Open in IMG/M
3300033806\|Ga0314865_194763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2575	544	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.75%
Host-Associated	Host-Associated	6.25%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.38%
Aquatic	Environmental → Aquatic	9.38%
Plants	Host-Associated → Plants	6.25%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.03%
Freshwater	Environmental → Aquatic → Freshwater	8.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.91%
Peat	Environmental → Terrestrial → Peat	2.34%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.34%
Sediment	Environmental → Aquatic → Sediment	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.06%
Loam	Environmental → Terrestrial → Soil → Loam	10.16%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.28%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.03%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.12%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.34%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.34%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.78%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.78%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.25%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.12%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.12%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.34%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.34%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.34%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.56%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.78%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.78%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063455_1012263541	3300004153	Soil	MTTRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTLGYTGDGKRQRR*
Ga0066395_100347171	3300004633	Tropical Forest Soil	MATRRRRGENGISFEHRGPCRDPERHRHCPGLWRGEFTLGYTD
Ga0008090_149871121	3300005363	Tropical Rainforest Soil	MATRRRRGEDGISFEHRGPCRDPQRHRHCPGLWRGEFTLGYTGDG
Ga0070706_1005144041	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTTRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTTGYT
Ga0070698_1002475195	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VDEVVGTHRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTTGYTG
Ga0070698_1003895072	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTTRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTTGYTG
Ga0068852_1008859852	3300005616	Corn Rhizosphere	MTTRRRRGEDGISFEHRGPCTDPHRHRHCPGLWRGE
Ga0066905_1018790832	3300005713	Tropical Forest Soil	MATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEITMGYTEAGKR
Ga0070717_115141812	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTTRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRGELTVGYTGDGKRQRRKVS
Ga0066652_1020703112	3300006046	Soil	MATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRG
Ga0075017_1007850211	3300006059	Watersheds	MATRRRRGEDGISFEHRGPCRDPHRHRNCPGLWRGEITLGYTGDG
Ga0070715_108358083	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSTRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTLGYTGDGKRQR
Ga0070712_1008185381	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MAATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGELT
Ga0070712_1018985992	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSTRRRRGEDGISFEHRGPCTDPHRHRHCPGLWRGELT
Ga0075433_103033731	3300006852	Populus Rhizosphere	MAARRRRGEDGISFEHRGPCSDPERHRHCPGLWRGEITLGYTEDGRRNRR
Ga0075425_1023166372	3300006854	Populus Rhizosphere	MTTRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGE
Ga0075424_1003512291	3300006904	Populus Rhizosphere	MATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEVTLGYTEA
Ga0079219_107921041	3300006954	Agricultural Soil	MTTRRRRGEDGISFEHRGPCCDPHRHRHCPGLWRGELTVGYT
Ga0099828_114221531	3300009089	Vadose Zone Soil	MATRRRRGEDGISFEHRGPCLDRARHRHCPGLWRGEVTLG
Ga0116216_104556911	3300009698	Peatlands Soil	MATRRRRGEDGISFEHRGPCRDPHRHRNCPGLWRGEITLGYTGDGKR
Ga0116219_102514091	3300009824	Peatlands Soil	MTTRRRRGEDGISFEHRGPCRDPQRHRHCPGLWRGEITLG
Ga0116223_102225102	3300009839	Peatlands Soil	MTTRRRRGEDGISFEHRGPCRDPQRHRHCPGLWRGEI
Ga0134126_104812181	3300010396	Terrestrial Soil	MTTRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRGEITTGYTGDGKRT
Ga0137380_101460334	3300012206	Vadose Zone Soil	MATRRRRGEDGISFEHRGACRDPERHRHCPGLWRGEV
Ga0137366_100286995	3300012354	Vadose Zone Soil	MTTRRRRGEDGISFAHRGPCSDPHRHRHCPGLWRGELTLGYTGGGKRQR
Ga0137371_106288471	3300012356	Vadose Zone Soil	MATRRRRDEDGISFEHRGPCRDPKRHRHCPGLWRGEFTLGYTGDGTRTRR
Ga0137390_101727882	3300012363	Vadose Zone Soil	MTTRRRRGEDGISFEHRGPCRDPHRHRNCPGLWRGEFTTGYTGDGTRTRRKVS
Ga0157338_10598791	3300012515	Arabidopsis Rhizosphere	MTPRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRGELTLG
Ga0137419_106599142	3300012925	Vadose Zone Soil	MTTRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRGELTLGYTG
Ga0137404_111701831	3300012929	Vadose Zone Soil	MTATRRRRGEDGISFEHRGPCTDPHRHRHCPGLWRGELTLGYSGDGKRQRRK
Ga0126375_101876101	3300012948	Tropical Forest Soil	MATRRRRGEDEISFEHRRPCRDPERHRHCPGLWRGESTLGYTG
Ga0164299_103582871	3300012958	Soil	MATRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTLG
Ga0182030_115774871	3300014838	Bog	MTATRRRRGEDGISFEHRGPCTDPHRHRHCPGLWRGELTL
Ga0157379_114877182	3300014968	Switchgrass Rhizosphere	MATRRRGGEDGISFEHRGPCSDPQRHRHCPGLWRGELTVGYTGDGK
Ga0182039_107022491	3300016422	Soil	MATRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGE
Ga0182038_111071841	3300016445	Soil	MATRRRRGEDGISFEHRGACRDPQRHRHCSGLWRGEVSLG
Ga0187812_10152905	3300017821	Freshwater Sediment	MTTRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEITLGYTGDGKRQRRKV
Ga0187812_11415542	3300017821	Freshwater Sediment	MTTRRRHGEDGISFEHRGPCRDPHRHHNCPGLWRGEFTTG
Ga0187807_11938811	3300017926	Freshwater Sediment	MAARRRRGEDGISFEHRGSCRDPGRHRHCPGLWRGEVT
Ga0187806_10221673	3300017928	Freshwater Sediment	MTTRRRRGEDGISFEHRGPCRDPDRHRHCPGLWRGDITTGYTGDG
Ga0187806_10933041	3300017928	Freshwater Sediment	MAATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEITLGYTGDGKRARRK
Ga0187808_100068827	3300017942	Freshwater Sediment	MTTRRRRGEDGISFEHRGPCRDPQRHRHCPGLWRGEIT
Ga0187819_105206962	3300017943	Freshwater Sediment	MATRRRRGEDSISFEHRGPCRDPHRHRNCPGLWRGELTLGYTPDGKRQRRKV
Ga0187879_103118232	3300017946	Peatland	VDEVLGTHRRRRGEDGISFEHRGPCRDPQRHRNCPGLWRGEFTTGYTGDG
Ga0187817_102524612	3300017955	Freshwater Sediment	MTATRRRRGENGISFEHRGPCRDPERHRHCPGLWRGEI
Ga0187779_105255732	3300017959	Tropical Peatland	MATRRRRGEDGISFEHRGPCSDPQRHRHCPGLWRGEITLGYT
Ga0187778_103974092	3300017961	Tropical Peatland	MATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEITLGYTGD
Ga0187805_101706451	3300018007	Freshwater Sediment	MTTRRLHGEDGISFEHRGPCRDPHRHRNCPGLWRGEFTTGYTGDGK
Ga0187887_100843763	3300018043	Peatland	MTATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRAELTTGYTDD
Ga0187766_110000341	3300018058	Tropical Peatland	MAARRRRGEDGISFEHRGGPCRDPGRHRNCPGLWRGEITLGYTSDGKRDR
Ga0187772_108090961	3300018085	Tropical Peatland	MATRRRRGEDGISFEHRGPCRDPQRHRHCPGLWRGELTL
Ga0066669_111580451	3300018482	Grasslands Soil	MTTRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRGELTLGYTGDGKR
Ga0137408_12431481	3300019789	Vadose Zone Soil	MTATRRRRGEDGISFEHLGPCTDPHRHRHCPACGAAS
Ga0210403_106883772	3300020580	Soil	MTTRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRGELTLGYAGD
Ga0210401_110755301	3300020583	Soil	MTTRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTVGYTGDGKRTRRK
Ga0210408_110584512	3300021178	Soil	MATRRRRGEDGISFEHRGPRRDPHRHRHCPGMWRGELTVGYT
Ga0210383_102179763	3300021407	Soil	MTATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEITLGYTGAG
Ga0210384_114004762	3300021432	Soil	MTTRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTV
Ga0210392_108544951	3300021475	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRHCPGLWRGEITTGYT
Ga0210402_114505541	3300021478	Soil	MTTRRRRGEDGISFEHRGPCSDPQRHRNCPGLWRGE
Ga0210410_103007523	3300021479	Soil	MTTRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRGEITTGYTGD
Ga0210410_113362201	3300021479	Soil	MATRRRRGEDGISFEHRGPCSDPQRHRHCPGLWRGELTLGYTG
Ga0207692_105305801	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTATRRRRGEDGISFEHRGPCSDPQRHRHCPGLWRGELTVGYTG
Ga0207671_106425652	3300025914	Corn Rhizosphere	MATRRRRGEDGISFEHRGPCSDPQRHRHCPGLWRGELTVGYT
Ga0207702_112195831	3300026078	Corn Rhizosphere	MSTRRRRGEDGISFEHRGPCADPHRHRHCPGLWRGELTTGYTSDGKRQRRKV
Ga0208696_12566911	3300027696	Peatlands Soil	MATRRMRGEDGISFEHRGPCRDPHRHRNCPGLWRGEITLGYTGD
Ga0209177_104115861	3300027775	Agricultural Soil	MATRRRRGEDGISFEHRGPCRDPHRHRNCPGLWRGEITLG
Ga0209006_108856411	3300027908	Forest Soil	MTTRRRRGEDGISFEHRGPCSDPQRHRHCPGLWRGEITLGYTGDGKRARR
Ga0308309_106616161	3300028906	Soil	MTATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEL
Ga0311371_122309672	3300029951	Palsa	VDEVLGTHRRRRGEDGISFEHRGPCRDPQRHRHCPGLWRGEITLGYTGDGKRAR
Ga0311339_100968231	3300029999	Palsa	MATRRRHGEDGISFEHRGPCRDPQRHRTCPGLWRGEFT
Ga0311356_114727512	3300030617	Palsa	MTARRRHGEDGISFEHRGPCRDPRRHRTCPGLWRGEFTTGYTG
Ga0318516_102733042	3300031543	Soil	MATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEIT
Ga0318516_104473792	3300031543	Soil	MATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEMTLGYAEDGRR
Ga0318516_105557562	3300031543	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRNCPGLWRGEITLG
Ga0318516_105810331	3300031543	Soil	MATRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTVGYTGDRKR
Ga0318538_107253421	3300031546	Soil	MATRRRRGEDGISFEHRGPCSDPKRHRHCPGLWRGEITTGYTGDGKRTRRKVSG
Ga0318528_103949902	3300031561	Soil	MATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEFTLGYTEDGT
Ga0318573_101669751	3300031564	Soil	MATRRRRGEDGISFEHRGPCRDPHRHRTCPGLWRGEITTGYTGDGKRT
Ga0318573_102621611	3300031564	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRTCPGLWRGEITLGY
Ga0318561_103976171	3300031679	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRTCPGLWRGEIT
Ga0318574_102708741	3300031680	Soil	MATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEFTLGYTED
Ga0318574_108685631	3300031680	Soil	MTTRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRGELTVGYTGDG
Ga0318572_104090611	3300031681	Soil	MTTRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELT
Ga0310686_1197444142	3300031708	Soil	MTTRRRHGEDGISFEHRGPCRDPQRHRNCPGLWRGEFTTGYTGDGTRTRRK
Ga0310686_1198556892	3300031708	Soil	MTTRRRRGEDGISFEHRGPCRDPHRHRNCPGLWRGEFTTGYTGDG
Ga0318496_106240781	3300031713	Soil	MATRRRRGEDGISFEHRGTCSDPNRHRHCPGLWRGEITTGYTGD
Ga0306917_104923981	3300031719	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRTCPGLWRGEITLGYTGDGRRTRR
Ga0318493_106945431	3300031723	Soil	MATRRRRGEDGISFEHRGPCRDPARHRNCPGLWRGEITTG
Ga0318493_107587741	3300031723	Soil	MATRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTVGYTGDG
Ga0318502_110297731	3300031747	Soil	MATRRRRGEDGISFEHRGPCSDPKRHRHCPGLWRGEITVGYT
Ga0318554_103542142	3300031765	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRHCPGLWRGEITLGYTGDG
Ga0318546_104737852	3300031771	Soil	MATRRRRGEDGISFEHRGPCRDPHRHRNCPGLWRGEITLGYTGDGKRT
Ga0318498_102272801	3300031778	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRNCPGLWRGEITTGYTGD
Ga0318529_100516913	3300031792	Soil	MATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEFTLGYTEEG
Ga0318529_101720273	3300031792	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRNCPGLWRGEITLGYT
Ga0318503_101950482	3300031794	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRTCPGLWRGEITLGYTG
Ga0318523_105772351	3300031798	Soil	MATRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRGELTVGYTGDG
Ga0318523_106533742	3300031798	Soil	MTTRRRRGEDGISFEHRGPCRDPYRHRHCPGRWRGEI
Ga0318568_102070121	3300031819	Soil	MATRRRRGEDGISFEHRGPCRDPDRHRHCPGLWRGEFTLGYTGDGT
Ga0318499_102130002	3300031832	Soil	MATRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTVGYTG
Ga0318512_106665181	3300031846	Soil	MATRRRRGEDGISFEHRGPCHDPERHRHCPGLWRGEITLGYTGDG
Ga0318495_103636051	3300031860	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRNCPGLWRGEITLGYTG
Ga0306919_105777212	3300031879	Soil	MATRRRRGEDGISFEHRGTCSDPNRHRHCPGLWRGEITTGYTGDGKR
Ga0306925_121024702	3300031890	Soil	MATRRRRGEDGISFEHRGPCRDPERHRHCPGLWRGEMTLGYAEDG
Ga0306923_113497101	3300031910	Soil	MANRRRRGEDGISFEHRGGPCRDPGRHRNCPGLWRGEITLGYTGDG
Ga0306921_118814182	3300031912	Soil	MAARRRRGEDGISFEHRGPCRDPGRHRHCPGLWRGEVTLGYSEDGRRQRRK
Ga0310916_115665771	3300031942	Soil	MATRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELTVGYTGDGKRQRRKV
Ga0306926_111276751	3300031954	Soil	MATRRRRGEDGISFEHRGPCRDPHRHRNCPGLWRGEITLGYTG
Ga0306926_124090151	3300031954	Soil	MTTRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGEITVGYT
Ga0306922_107163681	3300032001	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRNCPGLWRGEITTGYTGDGKRT
Ga0318563_101271103	3300032009	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRTCPGLWRGEITLG
Ga0318569_105137361	3300032010	Soil	MATRRRRGEDGISFEHRAGPCRDPSRHRHCPGLWRGEITLGYTGDGKRNRRKVS
Ga0318558_104430422	3300032044	Soil	MATRRRRGEDGISFEHRGACRDPQRHRHCPGLWRGEVSLGYTV
Ga0318570_104602961	3300032054	Soil	MATRRRRGEDGISFEHRGACRDPQRHRHCSGLWRGEVSLGYT
Ga0318570_105378631	3300032054	Soil	MAARRRRGEDGISFEHRGPCRDPRRHRNCPGLWRGEITTGYTG
Ga0318513_101846182	3300032065	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRTCPGLWRGEITLGYTGDGRRT
Ga0318514_103494372	3300032066	Soil	MATRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGELSVG
Ga0318524_104661591	3300032067	Soil	MTTRRRRGEDGISFEHRGPCRDPHRHRHCPGLWRGEITTGY
Ga0318553_104661971	3300032068	Soil	MATRRRRGEDGISFEHRGPCRDPRRHRHCPGLWRGEITLGYT
Ga0318525_102517782	3300032089	Soil	MTTRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRGELTVGYTGD
Ga0306920_1021955292	3300032261	Soil	MATRRRRGEDGISFEHRGPCSDPLRHRHCPGLWRGEITLGYTGDGK
Ga0335080_109697302	3300032828	Soil	MTTRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRG
Ga0335083_102545802	3300032954	Soil	MSTRRRRGEDGISFEHRGPCTDPHRHRHCPGLWRGEL
Ga0335076_106219171	3300032955	Soil	MAARRRRGEDGISFEHRGPCSDPQRHRHCPGLWRGEMTLGYTSDGKRAR
Ga0335077_103998701	3300033158	Soil	MTTRRRRGEDGISFEHRGPCSDPHRHRHCPGLWRGE
Ga0318519_110419471	3300033290	Soil	MATRRRRGEDGISFEHRAGPCRDPSRHRHCPGLWRGEITLGY
Ga0314865_194763_412_543	3300033806	Peatland	MATRRRRGEDGISFEHRGACRDPERHRHCPGLWRGEITLGYTED

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065144

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences