| Basic Information | |
|---|---|
| Family ID | F064088 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 129 |
| Average Sequence Length | 45 residues |
| Representative Sequence | QLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK |
| Number of Associated Samples | 108 |
| Number of Associated Scaffolds | 129 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 1.56 % |
| % of genes near scaffold ends (potentially truncated) | 96.12 % |
| % of genes from short scaffolds (< 2000 bps) | 85.27 % |
| Associated GOLD sequencing projects | 104 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.52 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (64.341 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (16.279 % of family members) |
| Environment Ontology (ENVO) | Unclassified (45.736 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (48.837 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 40.28% β-sheet: 0.00% Coil/Unstructured: 59.72% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 129 Family Scaffolds |
|---|---|---|
| PF08401 | ArdcN | 2.33 |
| PF08291 | Peptidase_M15_3 | 0.78 |
| PF13671 | AAA_33 | 0.78 |
| PF03104 | DNA_pol_B_exo1 | 0.78 |
| PF08410 | DUF1737 | 0.78 |
| PF06941 | NT5C | 0.78 |
| PF01327 | Pep_deformylase | 0.78 |
| PF01555 | N6_N4_Mtase | 0.78 |
| PF14743 | DNA_ligase_OB_2 | 0.78 |
| PF08282 | Hydrolase_3 | 0.78 |
| COG ID | Name | Functional Category | % Frequency in 129 Family Scaffolds |
|---|---|---|---|
| COG4227 | Antirestriction protein ArdC | Replication, recombination and repair [L] | 2.33 |
| COG0242 | Peptide deformylase | Translation, ribosomal structure and biogenesis [J] | 0.78 |
| COG0417 | DNA polymerase B elongation subunit | Replication, recombination and repair [L] | 0.78 |
| COG0560 | Phosphoserine phosphatase | Amino acid transport and metabolism [E] | 0.78 |
| COG0561 | Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases | Coenzyme transport and metabolism [H] | 0.78 |
| COG0863 | DNA modification methylase | Replication, recombination and repair [L] | 0.78 |
| COG1041 | tRNA G10 N-methylase Trm11 | Translation, ribosomal structure and biogenesis [J] | 0.78 |
| COG1877 | Trehalose-6-phosphate phosphatase | Carbohydrate transport and metabolism [G] | 0.78 |
| COG2189 | Adenine specific DNA methylase Mod | Replication, recombination and repair [L] | 0.78 |
| COG2217 | Cation-transporting P-type ATPase | Inorganic ion transport and metabolism [P] | 0.78 |
| COG3769 | Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily | Carbohydrate transport and metabolism [G] | 0.78 |
| COG4502 | 5'(3')-deoxyribonucleotidase | Nucleotide transport and metabolism [F] | 0.78 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 64.34 % |
| All Organisms | root | All Organisms | 35.66 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 16.28% |
| Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 12.40% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 12.40% |
| Freshwater, Plankton | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton | 6.98% |
| Freshwater | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater | 6.98% |
| Freshwater | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater | 5.43% |
| Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 4.65% |
| Freshwater | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater | 4.65% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 3.10% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 3.10% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 3.88% |
| Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 3.88% |
| Freshwater | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater | 2.33% |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 2.33% |
| Freshwater Lentic | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic | 1.55% |
| Estuary Water | Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water | 1.55% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 1.55% |
| Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment | 0.78% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 0.78% |
| Freshwater | Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater | 0.78% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 0.78% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine | 0.78% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 0.78% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 0.78% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 0.78% |
| Deep Subsurface | Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface | 0.78% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000265 | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10 | Environmental | Open in IMG/M |
| 3300002296 | Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion | Environmental | Open in IMG/M |
| 3300002408 | Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123) | Environmental | Open in IMG/M |
| 3300002835 | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) | Environmental | Open in IMG/M |
| 3300003409 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA | Environmental | Open in IMG/M |
| 3300003413 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD | Environmental | Open in IMG/M |
| 3300003430 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD | Environmental | Open in IMG/M |
| 3300003493 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN | Environmental | Open in IMG/M |
| 3300005517 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4) | Environmental | Open in IMG/M |
| 3300005527 | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG | Environmental | Open in IMG/M |
| 3300005582 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF | Environmental | Open in IMG/M |
| 3300005584 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF | Environmental | Open in IMG/M |
| 3300005662 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) | Environmental | Open in IMG/M |
| 3300006165 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA | Environmental | Open in IMG/M |
| 3300006803 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA | Environmental | Open in IMG/M |
| 3300007229 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA | Environmental | Open in IMG/M |
| 3300007546 | Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02 | Environmental | Open in IMG/M |
| 3300007548 | Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3 | Environmental | Open in IMG/M |
| 3300007549 | Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02 | Environmental | Open in IMG/M |
| 3300007590 | Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02 | Environmental | Open in IMG/M |
| 3300007634 | Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02 | Environmental | Open in IMG/M |
| 3300007642 | Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3 | Environmental | Open in IMG/M |
| 3300007651 | Estuarine microbial communities from the Columbia River estuary - metaG 1555C-3 | Environmental | Open in IMG/M |
| 3300007692 | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743 | Environmental | Open in IMG/M |
| 3300007957 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_3.0um | Environmental | Open in IMG/M |
| 3300007992 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um | Environmental | Open in IMG/M |
| 3300008110 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA | Environmental | Open in IMG/M |
| 3300008111 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA | Environmental | Open in IMG/M |
| 3300008113 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA | Environmental | Open in IMG/M |
| 3300008114 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA | Environmental | Open in IMG/M |
| 3300008259 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA | Environmental | Open in IMG/M |
| 3300008261 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA | Environmental | Open in IMG/M |
| 3300008262 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA | Environmental | Open in IMG/M |
| 3300009002 | Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 | Environmental | Open in IMG/M |
| 3300009079 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 | Environmental | Open in IMG/M |
| 3300009183 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG | Environmental | Open in IMG/M |
| 3300009504 | Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment | Environmental | Open in IMG/M |
| 3300010151 | Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG | Environmental | Open in IMG/M |
| 3300012663 | Freshwater microbial communities from Indian River, Ontario, Canada - S50 | Environmental | Open in IMG/M |
| 3300013004 | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG | Environmental | Open in IMG/M |
| 3300017727 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20 | Environmental | Open in IMG/M |
| 3300017752 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22 | Environmental | Open in IMG/M |
| 3300017767 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20 | Environmental | Open in IMG/M |
| 3300017774 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D | Environmental | Open in IMG/M |
| 3300017781 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14 | Environmental | Open in IMG/M |
| 3300018036 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300020141 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 | Environmental | Open in IMG/M |
| 3300020159 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 | Environmental | Open in IMG/M |
| 3300020160 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1 | Environmental | Open in IMG/M |
| 3300020161 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1 | Environmental | Open in IMG/M |
| 3300020172 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1 | Environmental | Open in IMG/M |
| 3300020191 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020527 | Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
| 3300020531 | Freshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
| 3300020532 | Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes) | Environmental | Open in IMG/M |
| 3300021141 | Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion | Environmental | Open in IMG/M |
| 3300021961 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D | Environmental | Open in IMG/M |
| 3300021962 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D | Environmental | Open in IMG/M |
| 3300021963 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D | Environmental | Open in IMG/M |
| 3300022072 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3) | Environmental | Open in IMG/M |
| 3300024296 | Seawater microbial communities from Monterey Bay, California, United States - 36D | Environmental | Open in IMG/M |
| 3300024324 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_200_MG | Environmental | Open in IMG/M |
| 3300024332 | Seawater microbial communities from Monterey Bay, California, United States - 73D | Environmental | Open in IMG/M |
| 3300024343 | Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction | Environmental | Open in IMG/M |
| 3300024572 | Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8h (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300026473 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8d | Environmental | Open in IMG/M |
| 3300027114 | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes) | Environmental | Open in IMG/M |
| 3300027125 | Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_8h | Environmental | Open in IMG/M |
| 3300027146 | Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_0h | Environmental | Open in IMG/M |
| 3300027154 | Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8h | Environmental | Open in IMG/M |
| 3300027233 | Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02 (SPAdes) | Environmental | Open in IMG/M |
| 3300027285 | Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8d | Environmental | Open in IMG/M |
| 3300027291 | Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepB_8d | Environmental | Open in IMG/M |
| 3300027387 | Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02 (SPAdes) | Environmental | Open in IMG/M |
| 3300027534 | Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8d | Environmental | Open in IMG/M |
| 3300027563 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes) | Environmental | Open in IMG/M |
| 3300027581 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes) | Environmental | Open in IMG/M |
| 3300027593 | Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8h | Environmental | Open in IMG/M |
| 3300027656 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes) | Environmental | Open in IMG/M |
| 3300027756 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes) | Environmental | Open in IMG/M |
| 3300027769 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) | Environmental | Open in IMG/M |
| 3300027772 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes) | Environmental | Open in IMG/M |
| 3300027798 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes) | Environmental | Open in IMG/M |
| 3300027804 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes) | Environmental | Open in IMG/M |
| 3300027892 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes) | Environmental | Open in IMG/M |
| 3300028127 | Seawater microbial communities from Monterey Bay, California, United States - 49D | Environmental | Open in IMG/M |
| 3300028391 | Seawater microbial communities from Monterey Bay, California, United States - 24D | Environmental | Open in IMG/M |
| 3300031143 | Marine microbial communities from water near the shore, Antarctic Ocean - #422 | Environmental | Open in IMG/M |
| 3300031167 | Marine microbial communities from water near the shore, Antarctic Ocean - #418 | Environmental | Open in IMG/M |
| 3300031628 | Marine microbial communities from water near the shore, Antarctic Ocean - #229 | Environmental | Open in IMG/M |
| 3300031703 | Marine microbial communities from water near the shore, Antarctic Ocean - #34 | Environmental | Open in IMG/M |
| 3300031705 | Marine microbial communities from water near the shore, Antarctic Ocean - #36 | Environmental | Open in IMG/M |
| 3300031857 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 | Environmental | Open in IMG/M |
| 3300031963 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116 | Environmental | Open in IMG/M |
| 3300032050 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122 | Environmental | Open in IMG/M |
| 3300032116 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119 | Environmental | Open in IMG/M |
| 3300033994 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 | Environmental | Open in IMG/M |
| 3300034018 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021 | Environmental | Open in IMG/M |
| 3300034061 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 | Environmental | Open in IMG/M |
| 3300034064 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054 | Environmental | Open in IMG/M |
| 3300034093 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072 | Environmental | Open in IMG/M |
| 3300034102 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 | Environmental | Open in IMG/M |
| 3300034104 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 | Environmental | Open in IMG/M |
| 3300034105 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127 | Environmental | Open in IMG/M |
| 3300034110 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171 | Environmental | Open in IMG/M |
| 3300034120 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172 | Environmental | Open in IMG/M |
| 3300034284 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075 | Environmental | Open in IMG/M |
| 3300034356 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| LP_A_09_P04_10DRAFT_10111418 | 3300000265 | Marine | YDYFGVGDSLIRERLFTKLSEELETSYDYIYDLWLK* |
| B570J29587_10078762 | 3300002296 | Freshwater | LGIEINETANFAGLLNQLIISGDVYEYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK |
| B570J29032_1088179401 | 3300002408 | Freshwater | NETPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK* |
| B570J29032_1098931471 | 3300002408 | Freshwater | GDVYRYIGVADSVIRERLFERLAEELEVSYDYVYNLWLK* |
| B570J40625_1013934431 | 3300002835 | Freshwater | ATFAGLLNQLIVGGDVYAYLYVYDSIIRERLFERLAEELEVSYEYVYNLWLK* |
| JGI26088J50261_10603082 | 3300003409 | Marine | ELSGGKDVYDYLGVYDSLIRERIFSELAKQLKTTYDEIYNMWLK* |
| JGI25922J50271_100217811 | 3300003413 | Freshwater Lake | LIVGGDVYRYIGVGDSIVRERLFERLAEELEVSYDYVYNLWMNA* |
| JGI25922J50271_100289334 | 3300003413 | Freshwater Lake | PTFAGLLNQLIVSGDVYRYIGVSDSVIRERLFERLAEELEVSYDYVYNLWLK* |
| JGI25921J50272_1000531412 | 3300003430 | Freshwater Lake | LLNQLIVGGDVYRYIGVADSVIRERLFERLAEELNVKYDYVYNLWLK* |
| JGI25923J51411_10237974 | 3300003493 | Freshwater Lake | TPTFAGLLNQLIVSGDVYRYIGVSDSIVRERLFERLAVELEVSYEYVYNLWIK* |
| Ga0070374_104397473 | 3300005517 | Freshwater Lake | VYAYLYVYDSIVRERLFEKLAEELNVKYDYVYNLWIK* |
| Ga0068876_103592292 | 3300005527 | Freshwater Lake | ELNETPTFAGLLNQLIVGGDVYRYIGVADSVIRERLFERLAEELEVSYDYVYNLWLK* |
| Ga0049080_102680801 | 3300005582 | Freshwater Lentic | YAYLYVYDSIVRERLFEKLAEELEVSYEYVYNLWLK* |
| Ga0049082_101045053 | 3300005584 | Freshwater Lentic | TPTFAGLLNQLIVSGDVYRYIGVSDSIIRERLFERLAVELEVSYEYVYNLWLK* |
| Ga0078894_116489462 | 3300005662 | Freshwater Lake | TPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYEYVYNLWLK* |
| Ga0075443_102582591 | 3300006165 | Marine | NDVYGYIGVGDSIIRERLFEKLSEILKTPYDYVYNLWLNN* |
| Ga0075467_101790291 | 3300006803 | Aqueous | NDVYSYIGVGDSIIRERLFSKLAEQLNTSYDYVYNLWLKK* |
| Ga0075468_100443241 | 3300007229 | Aqueous | YIGVGDSIIRERLFSKLAEQLNTSYDYVYNLWLKK* |
| Ga0102874_11790911 | 3300007546 | Estuarine | TPTFAGLLNQLIVSGDVYRYIGVGDSIIRERLFERLAEELGVSYDYVYNLWLK* |
| Ga0102877_11613283 | 3300007548 | Estuarine | DVYRYIGVTDSVIRERLFEKLAETLNVSYDYVYNLWLK* |
| Ga0102879_12178231 | 3300007549 | Estuarine | DVYAYLYVYDSIIRERLFERLAEELNVKYEYVYNLWLK* |
| Ga0102917_11776103 | 3300007590 | Estuarine | ETPTFAGLLNQLIVSGDVYRYIGVGDSIIRERLFERLAEELGVSYDYVYNLWLK* |
| Ga0102901_11645721 | 3300007634 | Estuarine | DVYRYIGVSDSVIRERLFEKLAETLNVSYDYVYNLWLK* |
| Ga0102901_12061202 | 3300007634 | Estuarine | QLIVSGDVYRYIGVSDSVIRERLFERLAEELEVSYDYVYNLWLK* |
| Ga0102876_11518071 | 3300007642 | Estuarine | YEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWIK* |
| Ga0102876_11687943 | 3300007642 | Estuarine | GLLNQLIVSGDVYRYIGVSDSVIRERLFERLAEELEVSYDYVYNLWLK* |
| Ga0102900_10983871 | 3300007651 | Estuarine | LNQLIVDGDIYQYIGVSDSIVRERLFEKLAETLNVSYDYIYNLWLN* |
| Ga0102823_12142931 | 3300007692 | Estuarine | QYIGVSDSLVRERLFEKLAETLNVGYDYIYNLWLN* |
| Ga0105742_10037292 | 3300007957 | Estuary Water | YGYIGVGDSIIRERLFEKLSEILNCSYDYVYNLWLNN* |
| Ga0105748_100230628 | 3300007992 | Estuary Water | GYIGVGDSIIRERLFEKLSEILNCSYDYVYNLWLNN* |
| Ga0114343_12357182 | 3300008110 | Freshwater, Plankton | LNETPTFAGLLNQLIVSGDVYRYIGVGDSIIRERLFERLAEELGVSYDYVYNLWLK* |
| Ga0114344_10732861 | 3300008111 | Freshwater, Plankton | QLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK* |
| Ga0114346_12597823 | 3300008113 | Freshwater, Plankton | NQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK* |
| Ga0114346_13348301 | 3300008113 | Freshwater, Plankton | GGDVYRYIGVGDSIIRERLFERLAEELNVKYDYVYNLWLK* |
| Ga0114347_10111721 | 3300008114 | Freshwater, Plankton | INKNITFAGLLNQLIVGGDVYKYIGVSDSLIRERCFERLAEELEVSYDYVYNLWLK* |
| Ga0114841_102841212 | 3300008259 | Freshwater, Plankton | LGLELAETPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0114336_11378221 | 3300008261 | Freshwater, Plankton | DGINPTATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWLK* |
| Ga0114336_13412381 | 3300008261 | Freshwater, Plankton | DGINPTATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFEGLAEELNVKYEYVYNLWLNN* |
| Ga0114337_12559733 | 3300008262 | Freshwater, Plankton | YIGVSDSVIRERLFERLAEELEVGYDYVYNLWLN* |
| Ga0102810_11056071 | 3300009002 | Estuarine | DYFGVGDSLIRDRLFTKLSEELETSYDYIYNLWLK* |
| Ga0102814_100427844 | 3300009079 | Estuarine | TINDIHSYIGVCDSIIRVRLFSKLAEQLNTNYDYVYNLWLKK* |
| Ga0114974_106208432 | 3300009183 | Freshwater Lake | IGINPTATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWIK* |
| Ga0114946_103354793 | 3300009504 | Sediment | YEYIGIGDSVIRERLFEKLAESLETTYDCVYNLWLT* |
| Ga0098061_12891501 | 3300010151 | Marine | VYDYLGVYDSLIRERLFSELAKQLKTTYENIYNLWLK* |
| Ga0157203_10407741 | 3300012663 | Freshwater | GINPTATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWIK* |
| Ga0164293_102451781 | 3300013004 | Freshwater | MGDGINPTATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYDY |
| Ga0164293_108301222 | 3300013004 | Freshwater | VELNETPTFAGLLNKLITNADIYHYIGVGDSIIRERLFEKLAEELEVSYDYVYNLWIK* |
| Ga0181401_10493821 | 3300017727 | Seawater | VYDYLGVYDSLIRERLFSELAKQLKTSYDYVYNLWLK |
| Ga0181400_11985471 | 3300017752 | Seawater | YDYLGVYDSLIRERLFSELAKQLKTSYDYVYNLWLK |
| Ga0181406_12530671 | 3300017767 | Seawater | QLFGDGNVYDYLGVYDSLIRERLFSELAKQLKTSYDYVYNLWLK |
| Ga0181358_11005314 | 3300017774 | Freshwater Lake | LIVSGDVYRYIGVSDSIIRERLFERLAVELEVSYEYVYNLWLK |
| Ga0181358_11408083 | 3300017774 | Freshwater Lake | LIVSGDVYRYIGVSDSIIRERLFERLAVELEVSYEYVYNLWIK |
| Ga0181358_11899373 | 3300017774 | Freshwater Lake | VSGDVYRYIGVGDSVIRERLFERLAEELEVSYDYVYNLWLSPIKKSL |
| Ga0181423_13755522 | 3300017781 | Seawater | NGGDVYSYFGVDDSIIRERLFTKLSEELETSYDYIYNLWLK |
| Ga0181600_1000699617 | 3300018036 | Salt Marsh | LYTNGDVYEYIGVGDSIVRERLFSELANSLEASYDYIYNLWLN |
| Ga0211732_10851641 | 3300020141 | Freshwater | LIIDGDIYQYIGVSDSIVRERLFEKLAETLNVGYDYIYNLWLN |
| Ga0211734_113180853 | 3300020159 | Freshwater | FAGLLNQLFVGGDVYEYLYVYDSIIRERVFEQLAEELGLGYEYVYKLWYDN |
| Ga0211733_106657553 | 3300020160 | Freshwater | QLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0211726_104657521 | 3300020161 | Freshwater | NETPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0211729_101892311 | 3300020172 | Freshwater | NETPTFAGLLNQLIVSGDVYRYIGVGDSIIRERLFERLAEELGVSYDYVYNLWLK |
| Ga0211729_109623883 | 3300020172 | Freshwater | LLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0181604_103125171 | 3300020191 | Salt Marsh | HKGNDVYDYIGVGDSIIRERLFEHLAKELQVNYDYVYNLWLS |
| Ga0208232_10286993 | 3300020527 | Freshwater | QLIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYEYVYNLWLNN |
| Ga0208487_10038021 | 3300020531 | Freshwater | DVYEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWIK |
| Ga0208487_10132334 | 3300020531 | Freshwater | GDVYEYIGVWDSLVRERLFDGLADELETSYDYVYNLWVK |
| Ga0208601_10110081 | 3300020532 | Freshwater | DVYEYLYVYDSIIRERLFERLAEELNVKYEYVYNLWLNN |
| Ga0214163_100814111 | 3300021141 | Freshwater | VYEYLYVYDSIIRERLFERLAEELNVKYEYVYNLWLNN |
| Ga0214163_10658683 | 3300021141 | Freshwater | VSGDVYRYIGVSDSVIRERLFERLAEELEVSYDYVYNLWIK |
| Ga0222714_105488123 | 3300021961 | Estuarine Water | AYLWAYDSIIRERCFEKLADELEVSYEYVYNLWLEA |
| Ga0222713_106383271 | 3300021962 | Estuarine Water | RYIGVSDSVIRERLFEKLAETLNVSYDYVYNLWLK |
| Ga0222713_107919671 | 3300021962 | Estuarine Water | LYEGNDVYEYIGVCDSIIRERLFERLAEELRTSYDYVYNLWLNN |
| Ga0222712_100189181 | 3300021963 | Estuarine Water | PTFAGLLNQLIVGGDVYRYIGVADSVIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0222712_101654121 | 3300021963 | Estuarine Water | DMGKGINPTATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWI |
| Ga0196889_10048956 | 3300022072 | Aqueous | TNDVYSYIGVGDSIIRERLFSKLAEQLNTSYDYVYNLWLKK |
| Ga0228629_11766472 | 3300024296 | Seawater | YVGVWDSIVRERLFEKLSEILETSYDYVYELWLKL |
| (restricted) Ga0233443_11988581 | 3300024324 | Seawater | NNDIYGYIGVGDSIIRERLFEKLSEILNCSYDYVYNLWLNN |
| Ga0228659_10577983 | 3300024332 | Seawater | DVYDYLGVYDSLIRERLFSELAKQLKTSYDYVYNLWLK |
| Ga0244777_102358771 | 3300024343 | Estuarine | GLLNQLIVSGDVYRYIGVSDSVIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0244777_105766071 | 3300024343 | Estuarine | GLVNELSVGKDVYDYLGVYDSLIRERLFSELAKQLKTTYGEIYHLWLNR |
| Ga0255268_11128221 | 3300024572 | Freshwater | NQLIVGGDVYQYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0255166_10208505 | 3300026473 | Freshwater | LIVGGDVYQYIGVGDSIIRERLFEQLANELEVSYEYVYNLWLK |
| Ga0208009_10129861 | 3300027114 | Deep Subsurface | LELNETPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELNVKYDYVYNLWLK |
| Ga0255106_10425783 | 3300027125 | Freshwater | AGINPTATFPGLLNQLIVSGDVYAYLYVYDSIIRERLFEKLAEELEVSYEYVYNLWLK |
| Ga0255104_10627381 | 3300027146 | Freshwater | ELNETPTFAGLLNQLIVGGDVYRYIGVSDSIVRERLFERLAEELEVSYEYVYNLWIK |
| Ga0255111_10792601 | 3300027154 | Freshwater | DVYRYIGVSDSIVRERLFERLAEELEVSYEYVYNLWLK |
| Ga0208678_10110188 | 3300027233 | Estuarine | LNELFTNNDIYGYIGVGDSIIRERLFEKLSEILNCSYDYVYNLWLNN |
| Ga0255131_10422181 | 3300027285 | Freshwater | DVYAYLYVYDSIVRERLFEKLAEELEVSYEYVYNLWLK |
| Ga0255139_10802033 | 3300027291 | Freshwater | VYRYIGVGDSIIRERLFERLAEELEVSYEYVYNLWLK |
| Ga0208311_10687713 | 3300027387 | Estuarine | VYRYIGVGDSVIRERLFERLAEELEVSYEYVYNLWLK |
| Ga0255125_11252551 | 3300027534 | Freshwater | INPTATFPGLLNQLIVSGDVYAYLYVYDSIVRERLFEKLAEELEVSYEYVYNLWLK |
| Ga0209552_11200473 | 3300027563 | Freshwater Lake | QLIVSGDVYRYIGVSDSIIRERLFERLAVELEVSYEYVYNLWIK |
| Ga0209651_10535791 | 3300027581 | Freshwater Lake | DVYRYIGVSDSIVRERLFERLAVELEVSYEYVYNLWIK |
| Ga0255118_10803163 | 3300027593 | Freshwater | GDVYRYIGVGDSIIRERLFERLAEELEVSYEYVYNLWLK |
| Ga0209357_11283543 | 3300027656 | Freshwater Lake | GLLNQLIVSGDVYRYIGVSDSIVRERLFERLAVELEVSYEYVYNLWIK |
| Ga0209444_102319141 | 3300027756 | Freshwater Lake | RYIGVSDSIIRERLFERLAVELEVSYEYVYNLWIK |
| Ga0209770_100971811 | 3300027769 | Freshwater Lake | LNETPTFAGLLNQLIVSGDVYRYIGVSDSVIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0209770_101967013 | 3300027769 | Freshwater Lake | ATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYEYVYNLWLNN |
| Ga0209768_102758963 | 3300027772 | Freshwater Lake | GDVYRYIGVSDSIVRERLFERLAVELEVSYEYVYNLWIK |
| Ga0209353_100389556 | 3300027798 | Freshwater Lake | QLIVSGDVYRYIGVSDSIIRERLFERLAVELEVSYEYVYNLWLK |
| Ga0209358_100493391 | 3300027804 | Freshwater Lake | LLNQLIVGGDVYRYIGVTDSIVRERLFEELAKQLEVSYEYVYNLWLKN |
| Ga0209550_100787187 | 3300027892 | Freshwater Lake | LIVGGDVYRYIGVGDSIVRERLFERLAEELEVSYDYVYNLWMNA |
| Ga0209550_105598791 | 3300027892 | Freshwater Lake | LNQLIVSGDVYAYLYVYDSIVRERLFEKLAEELNVKYDYVYNLWIK |
| Ga0233401_11039281 | 3300028127 | Seawater | VYEYVGVWDSIVRERLFEKLSEILETSYDYVYELWLKL |
| Ga0233394_10768883 | 3300028391 | Seawater | FSYFGVDDSIIRERLFTKLSEELETSYDYIYNLWLK |
| Ga0308025_11709841 | 3300031143 | Marine | DVYGYIGVGDSIIRERLFEKLSEILKTPYDYVYKLWLNN |
| Ga0308023_10052771 | 3300031167 | Marine | FTSNDVYGYIGVGDSIIRERLFEKLSEILNTPYDYVYKLWLNN |
| Ga0308014_10029221 | 3300031628 | Marine | SNDVYGYIGVGDSIIRERLFEKLSEILNTPYDYVYKLWLNN |
| Ga0308002_10514261 | 3300031703 | Marine | NELFTSNDVYGYIGVGDSIIRERLFEKLSEILKTPYDYVYNLWLNN |
| Ga0308003_11003981 | 3300031705 | Marine | LNELFTNNDVYGYIGVGDSIIRERLFEKLSEILKTPYDYVYKLWLNN |
| Ga0315909_104019383 | 3300031857 | Freshwater | LDLNLTPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAQELEVSYDYVYNLWINN |
| Ga0315909_106563011 | 3300031857 | Freshwater | ELFRDGDIYEYIGVSDSLIRERIFEKLAEELQVDYQYVYNLWN |
| Ga0315901_105827594 | 3300031963 | Freshwater | ETPTFAGLLNQLIVGGDVYRYIGVGDSVIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0315906_112554951 | 3300032050 | Freshwater | FAGLLNQLIVGGDVYRYIGVGDSVIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0315903_100042421 | 3300032116 | Freshwater | AGLLFELYRDGDVYEYIGVSDSLIRERIFEKLAEELQVDYQYVYNLWN |
| Ga0315903_109969931 | 3300032116 | Freshwater | FAGLLNQLIVGGDVYRYIGVADSIVRERLFEELAKQLEVSYEYVYNLWLKN |
| Ga0334996_0168398_1_159 | 3300033994 | Freshwater | PTFAGLLNQLIVSGDVYRYIGVGDSVIRERLFERLAEELEVSYEYVYNLWLK |
| Ga0334996_0286972_687_824 | 3300033994 | Freshwater | NKLITNADIYHYIGVADSVIRERLFERLAEELEVSYDYVYNLWIK |
| Ga0334985_0687883_414_554 | 3300034018 | Freshwater | LNQLIVGGDVYRYIGVGDSIIRERLFERLAEELNVKYDYVYNLWLK |
| Ga0334987_0681644_1_108 | 3300034061 | Freshwater | RYIGVGDSIIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0335001_0681391_3_158 | 3300034064 | Freshwater | TFAGLLNQLIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWIK |
| Ga0335012_0199661_1_111 | 3300034093 | Freshwater | YHYIGVADSVIRERLFERLAEELEVSYDYVYNLWIK |
| Ga0335029_0260318_949_1116 | 3300034102 | Freshwater | NVTPTFAGLLNQLIVGGDIYQYIGVSDSIIRERLFERLAWELEVSYDYVYNLWLK |
| Ga0335031_0840642_368_508 | 3300034104 | Freshwater | LNQLIVGGDVYRYIGVADSIVRERLFERLAEELDVSYEYVYNLWIK |
| Ga0335035_0178125_15_140 | 3300034105 | Freshwater | VGGDVYRYIGVADSVIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0335055_0154493_16_198 | 3300034110 | Freshwater | LGLELNETPTFAGLLNQLIVSGDVYRYIGVSDSVIRERLFERLAEELEVSYDYVYNLWIK |
| Ga0335056_0326322_4_180 | 3300034120 | Freshwater | VELNETPTFAGLLNKLITNADIYHYIGVADSVIRERLFERLAEELEVSYDYVYNLWIK |
| Ga0335056_0383742_3_116 | 3300034120 | Freshwater | VYRYIGVADSVIRERLFERLAEELEVSYDYVYNLWLK |
| Ga0335013_0048565_2954_3085 | 3300034284 | Freshwater | LIVGGDVYEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWIK |
| Ga0335048_0115585_1441_1587 | 3300034356 | Freshwater | GLLNQLIIGGDVYEYLYVYDSIIRERLFERLAEELNVKYDYVYNLWIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |