Metagenome Family F063884

Basic Information
Family ID	F063884
Family Type	Metagenome
Number of Sequences	129
Average Sequence Length	42 residues
Representative Sequence	MVTDLQIAARKVVSVNPATGETLREFECASEREVQAAVARAR
Number of Associated Samples	115
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.46 %
% of genes near scaffold ends (potentially truncated)	80.62 %
% of genes from short scaffolds (< 2000 bps)	74.42 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Most Common Taxonomy
Group	Bacteria (64.341 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.403 % of family members)
Environment Ontology (ENVO)	Unclassified (24.031 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.411 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.71% β-sheet: 15.71% Coil/Unstructured: 68.57%
Feature Viewer

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Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF01416	PseudoU_synth_1	69.77
PF02517	Rce1-like	9.30
PF02321	OEP	5.43
PF02803	Thiolase_C	3.88
PF02163	Peptidase_M50	0.78
PF00072	Response_reg	0.78
PF02737	3HCDH_N	0.78
PF01967	MoaC	0.78
PF02666	PS_Dcarbxylase	0.78
PF12146	Hydrolase_4	0.78
PF12833	HTH_18	0.78
PF01546	Peptidase_M20	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG0101	tRNA U38,U39,U40 pseudouridine synthase TruA	Translation, ribosomal structure and biogenesis [J]	69.77
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	10.85
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	9.30
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	9.30
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	3.88
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.78
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.78
COG0315	Molybdenum cofactor biosynthesis enzyme MoaC	Coenzyme transport and metabolism [H]	0.78
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.78
COG0688	Phosphatidylserine decarboxylase	Lipid transport and metabolism [I]	0.78
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.78
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.78
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.78
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.78

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.34 %
Unclassified	root	N/A	35.66 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.34 %
Unclassified	root	N/A	35.66 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.34 %
Unclassified	root	N/A	35.66 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	51.94 %
Unclassified	root	N/A	35.66 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	36.43 %
Unclassified	root	N/A	35.66 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.63 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.43 %
Unclassified	root	N/A	35.66 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	11.63 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.43 %
Unclassified	root	N/A	35.66 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11.63 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.43 %
Unclassified	root	N/A	35.66 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	5.43 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.43 %
Unclassified	root	N/A	35.66 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.88 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.43 %
Unclassified	root	N/A	35.66 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.88 %
Granulicella sp. L46	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_105531608	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300001546\|JGI12659J15293_10110039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300001593\|JGI12635J15846_10416735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
3300002568\|C688J35102_119189267	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300002908\|JGI25382J43887_10141078	Not Available	1234	Open in IMG/M
3300005538\|Ga0070731_11183383	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005587\|Ga0066654_10549124	Not Available	636	Open in IMG/M
3300005591\|Ga0070761_10881527	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300005764\|Ga0066903_101764710	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300005764\|Ga0066903_107989816	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	543	Open in IMG/M
3300005944\|Ga0066788_10209297	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	508	Open in IMG/M
3300006050\|Ga0075028_100236999	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300006086\|Ga0075019_10720704	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300006102\|Ga0075015_100176867	Not Available	1124	Open in IMG/M
3300006176\|Ga0070765_100192362	All Organisms → cellular organisms → Bacteria	1848	Open in IMG/M
3300006806\|Ga0079220_10269269	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300009098\|Ga0105245_11582716	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	707	Open in IMG/M
3300009522\|Ga0116218_1380192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300009552\|Ga0116138_1118929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300009645\|Ga0116106_1282651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300009665\|Ga0116135_1034883	Not Available	1732	Open in IMG/M
3300009824\|Ga0116219_10659027	Not Available	574	Open in IMG/M
3300010358\|Ga0126370_10098069	All Organisms → cellular organisms → Bacteria	2020	Open in IMG/M
3300010361\|Ga0126378_12476390	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300010398\|Ga0126383_11376283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	796	Open in IMG/M
3300011120\|Ga0150983_13664393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300012199\|Ga0137383_10293611	Not Available	1190	Open in IMG/M
3300012203\|Ga0137399_11617555	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300012205\|Ga0137362_10443320	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300012210\|Ga0137378_10244341	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1671	Open in IMG/M
3300012350\|Ga0137372_10379913	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300012351\|Ga0137386_10264314	Not Available	1237	Open in IMG/M
3300012363\|Ga0137390_10421180	All Organisms → cellular organisms → Bacteria → Acidobacteria	1313	Open in IMG/M
3300014162\|Ga0181538_10516763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300014165\|Ga0181523_10523613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300014199\|Ga0181535_10406620	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300014501\|Ga0182024_10018879	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	12781	Open in IMG/M
3300015245\|Ga0137409_10325855	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300017822\|Ga0187802_10197781	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	773	Open in IMG/M
3300017822\|Ga0187802_10398477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300017935\|Ga0187848_10470905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300017942\|Ga0187808_10439281	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300017946\|Ga0187879_10847393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300017975\|Ga0187782_10104334	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2087	Open in IMG/M
3300017993\|Ga0187823_10298104	Not Available	560	Open in IMG/M
3300018013\|Ga0187873_1055205	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1698	Open in IMG/M
3300018026\|Ga0187857_10235058	Not Available	847	Open in IMG/M
3300018033\|Ga0187867_10000627	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	31146	Open in IMG/M
3300018038\|Ga0187855_10350661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300018044\|Ga0187890_10848495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300018046\|Ga0187851_10640144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300018057\|Ga0187858_10880617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300018088\|Ga0187771_11747332	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300018468\|Ga0066662_10365350	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300018468\|Ga0066662_12487462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300019887\|Ga0193729_1078132	Not Available	1295	Open in IMG/M
3300020015\|Ga0193734_1015108	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
3300020583\|Ga0210401_11293126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300021168\|Ga0210406_10758666	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300021171\|Ga0210405_11031920	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300021407\|Ga0210383_10909634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300021407\|Ga0210383_11340444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300021432\|Ga0210384_11406262	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300021559\|Ga0210409_10818664	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804	Open in IMG/M
3300021560\|Ga0126371_10609135	Not Available	1241	Open in IMG/M
3300024331\|Ga0247668_1125344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300025500\|Ga0208686_1035643	Not Available	1216	Open in IMG/M
3300027625\|Ga0208044_1173891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300027629\|Ga0209422_1028674	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300027853\|Ga0209274_10097104	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1449	Open in IMG/M
3300027884\|Ga0209275_10355461	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300027910\|Ga0209583_10241641	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M
3300027911\|Ga0209698_10147611	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1931	Open in IMG/M
3300028798\|Ga0302222_10431556	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300029911\|Ga0311361_10005525	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	26291	Open in IMG/M
3300029944\|Ga0311352_11023910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300029951\|Ga0311371_10477942	Not Available	1655	Open in IMG/M
3300029955\|Ga0311342_11026477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300030057\|Ga0302176_10042177	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1744	Open in IMG/M
3300030494\|Ga0310037_10121822	Not Available	1198	Open in IMG/M
3300030707\|Ga0310038_10433012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300030707\|Ga0310038_10495494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300031057\|Ga0170834_100762122	All Organisms → cellular organisms → Bacteria → Acidobacteria	742	Open in IMG/M
3300031057\|Ga0170834_102987534	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1461	Open in IMG/M
3300031236\|Ga0302324_100899061	Not Available	1218	Open in IMG/M
3300031474\|Ga0170818_102980816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300031715\|Ga0307476_10536691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	867	Open in IMG/M
3300031720\|Ga0307469_10752318	Not Available	889	Open in IMG/M
3300031740\|Ga0307468_100990200	Not Available	738	Open in IMG/M
3300031740\|Ga0307468_101199935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300031823\|Ga0307478_10710323	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
3300031949\|Ga0214473_12175825	Not Available	535	Open in IMG/M
3300031962\|Ga0307479_11113637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300032035\|Ga0310911_10208090	Not Available	1114	Open in IMG/M
3300032174\|Ga0307470_10019444	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3024	Open in IMG/M
3300032180\|Ga0307471_100124367	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2412	Open in IMG/M
3300032515\|Ga0348332_11472685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1124	Open in IMG/M
3300032770\|Ga0335085_10850668	Not Available	999	Open in IMG/M
3300032770\|Ga0335085_12228989	Not Available	550	Open in IMG/M
3300032783\|Ga0335079_11581236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300032783\|Ga0335079_11910312	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300032828\|Ga0335080_11595832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300033807\|Ga0314866_002904	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1860	Open in IMG/M
3300033983\|Ga0371488_0022845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4501	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.22%
Host-Associated	Host-Associated	0.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.97%
Aquatic	Environmental → Aquatic	23.26%
Plants	Host-Associated → Plants	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.99%
Freshwater	Environmental → Aquatic → Freshwater	19.38%
Peat	Environmental → Terrestrial → Peat	6.20%
Sediment	Environmental → Aquatic → Sediment	3.88%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.38%
Loam	Environmental → Terrestrial → Soil → Loam	10.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.30%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.53%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.20%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.65%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.78%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.78%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.30%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.20%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.20%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.10%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.33%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.33%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.33%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.55%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.55%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.78%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.78%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.78%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025500	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028015	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE6	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033807	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1055316081	3300000955	Soil	MPTDLELAARTVASVNPATGEILRELECASDAAVQTAVARARA
JGI12659J15293_101100392	3300001546	Forest Soil	MASDLQIPVHKVASVNPATGEVLREFDCAAQGQIKAAVLAAHAAQPA
JGI12635J15846_104167352	3300001593	Forest Soil	MATDLQIDDLQIAARKAVSVNPATGEPLREFECSTEVQVQAV
C688J35102_1191892672	3300002568	Soil	MATDLQIASRRIVSLNPATGEVLREIECAGEIEVRDAVARA
JGI25382J43887_101410782	3300002908	Grasslands Soil	VTTRMATDVQIVTRKVVSVNPATGEVLREFESASESKVRAAVSR
Ga0062389_1049053201	3300004092	Bog Forest Soil	MVTDLQIAARKVVSVNPATGETLREFECASEREVQAAVARAR
Ga0066687_100151553	3300005454	Soil	MVIDVQVAARKVLSANPATGERLREFESASEDQVRTAVSRAR
Ga0070699_1016773001	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MGTDFQVAARKVVSVNPATGATLYEFECASETDVQAAVARAH
Ga0070731_111833831	3300005538	Surface Soil	MAADLQISARKLASVNPATGEILRELECAGEGEVETAVARARVVQAAWAETGLR
Ga0066654_105491241	3300005587	Soil	MATDLQIAVRRVASLNPATSEVLREFDCADEAEVC
Ga0070761_108815272	3300005591	Soil	VAIDLPATKAKISPVNPATGEVLRELECAGESEVRAAVER
Ga0066903_1017647102	3300005764	Tropical Forest Soil	MSSTRTSIAPMATDLQVAVRKVASINPATGDVLREIDCASDAQVQQAVARAR
Ga0066903_1079898161	3300005764	Tropical Forest Soil	MATDRQITAHSIRSLNPATGETLRGLDCAGETEIFAAVD
Ga0066788_102092972	3300005944	Soil	MATDLQIAVRKIVSVNPATGAVLREFECATEEQVRAAVAR
Ga0075028_1002369991	3300006050	Watersheds	MATDLQITARHVLSVNPATGEALQSFECAGEAEVHAAIE
Ga0075019_107207041	3300006086	Watersheds	MATDLQIATRKITSVNPATGELLREFECAGESEIQKAVALACVAQ
Ga0075015_1001768671	3300006102	Watersheds	MATDLHIAVRKVSSINPATGEVLREFECVSESEVGAAVARARAGQ
Ga0070765_1001923621	3300006176	Soil	MATDLQITVRKVASVNPATGEVLRELECASQSEVDAAVARARLAQ
Ga0070765_1013937941	3300006176	Soil	MVTDLQIAARKVVSVNPATGETLREFECASERDVQAAVA
Ga0079220_102692692	3300006806	Agricultural Soil	MATDLQIASRRIVSLNPATGEVLREIECAGESEVQDAVA
Ga0099827_109621252	3300009090	Vadose Zone Soil	MGTDLQVAARKVVSVNPATGATLYEFECASETDVQAAVA
Ga0105245_115827162	3300009098	Miscanthus Rhizosphere	MATDLKIAVSKIASVNPATGEVLREFESASEAEVHAA
Ga0116222_12176772	3300009521	Peatlands Soil	MATDLQIASARKVVSVNPATGEILHEFECATDAEVD
Ga0116218_13801921	3300009522	Peatlands Soil	MATDLQIAARKVVVVNPATGEVLRELECAGESEVEATVARAR
Ga0116138_11189291	3300009552	Peatland	MASELQVGARKVASVNPATGEVLRELECAGESEVRA
Ga0116105_10021571	3300009624	Peatland	MATDLQVTTRKVVSVNPATGETLREFEAATDAEVRA
Ga0116113_10946372	3300009638	Peatland	VVTDFQIVARKVASANPATGETLRELNCASENEVLEAVARAHAEQP
Ga0116106_12826512	3300009645	Peatland	MVTDQQVAARKISSVNPATGEVLRELDCANEGEVHSAVARARSAQA
Ga0116135_10348833	3300009665	Peatland	MATDLQIAARKIASVNPATGEVLRELECVDERQVEAAVARARVAQ
Ga0116219_106590271	3300009824	Peatlands Soil	MATDVQIAVRKVESVNPATGEVLREFECAGESEVRAAVAR
Ga0126370_100980691	3300010358	Tropical Forest Soil	MATDLQVAVRKVASVNPASGEILREIDCACGAEVQQAVSRARSEQTQWAALDI
Ga0126372_103009132	3300010360	Tropical Forest Soil	MATDFQIAVRSVVSRNPATGETLREIACTPEREIREAVARARAAQ
Ga0126378_124763901	3300010361	Tropical Forest Soil	MATDAQVAVRKVVSVNPATGEVLREFEPAGADEVQAAVMRARLAQSA
Ga0126383_113762832	3300010398	Tropical Forest Soil	MATHLQVAAGKIVSVNPATGDVLREFDCACEGDIESAVE
Ga0150983_136643931	3300011120	Forest Soil	MATDQQIAARKILSVNPATGEVLRELDCAVETEVAAAVERGHIAQTAWSDLGLQ
Ga0137389_116884821	3300012096	Vadose Zone Soil	MATELQVGVRKVVSVNPATGEILREFECFNEGEVQ
Ga0137383_102936111	3300012199	Vadose Zone Soil	MAIEIGVAARKLVSTNPATGEVLREFECASAAEVREAVARARCAQP
Ga0137382_110133622	3300012200	Vadose Zone Soil	LNYVATDLQIAAHKVVSVNPATGEMLREFECTDESEVSEAVE
Ga0137399_116175552	3300012203	Vadose Zone Soil	MATEAEIAVRKVVSVNPATGEVLREFECASEGDVRAAVARAHAAQVAW
Ga0137362_104433201	3300012205	Vadose Zone Soil	MATELQAAVRKVASVNPATGEVLRELECASDAEVQAAVARARAVQAAWA
Ga0137362_108718992	3300012205	Vadose Zone Soil	MATDLQIAARKVASIKPATGETLREFECTPEAEVQ
Ga0137378_102443411	3300012210	Vadose Zone Soil	LNYVATDLQIAAHKVVSVNPATGEMLREFECTDESEVSEAVERARSA
Ga0137387_103324531	3300012349	Vadose Zone Soil	MATDLQIAARKVASTNPSTGETLREFECASEAEVQAAVVRAR
Ga0137372_103799131	3300012350	Vadose Zone Soil	MATDLQTAARKIVPVNPATGEVLVELECAGEVEVATAVARARAAQAAWA
Ga0137386_102643143	3300012351	Vadose Zone Soil	MPIETPIGARRVVSTNPATGEVLREFECASDPEVQEAVT
Ga0137385_105921022	3300012359	Vadose Zone Soil	MATDLQIAVRKVVSVNPATGETLREFDCTDESEVREA
Ga0137390_104211801	3300012363	Vadose Zone Soil	MTADLQIAVRKVSSVNPATGEVLRELECAGEDEVIAAVARARAAQA
Ga0137390_120141261	3300012363	Vadose Zone Soil	MPIETPIGARKVVSTNPATGEVLREFECASDPEVREAVSRAHTVQPKW
Ga0181538_105167632	3300014162	Bog	MASELQVGARKVASVNPATGEVLRELECAGESEVR
Ga0181523_105236132	3300014165	Bog	MATDLQIAARKIASVNPATGEVLRELECAGEGAVEAVVARARAA
Ga0181535_104066202	3300014199	Bog	MATDVQVATRKLVVVNPATGEMLRELECAGEVEVEAAVDRAHIAQAAW
Ga0182024_1001887912	3300014501	Permafrost	MELEVAARKISAVNPATGEVLRELPCASETEVRTAVARAR
Ga0137409_103258551	3300015245	Vadose Zone Soil	MVTDLQVAVCKVVSVNPATGETLRELECASELEVGEA
Ga0137403_106483211	3300015264	Vadose Zone Soil	MATDLQSTVRKIVSVNPATGETLRELECASEADVHDAIGHAHA
Ga0187802_101977811	3300017822	Freshwater Sediment	MATDLQIAARKVVPVNPATGEVLRQFECADENEVFAA
Ga0187802_103984771	3300017822	Freshwater Sediment	MATDVQIVAPRISSLNPATGEVLRELNCAGEPEVQAAV
Ga0187818_105530382	3300017823	Freshwater Sediment	MATDLQIAVHKVVSVNPATGQVLREFESATEEDVRAA
Ga0187848_104709052	3300017935	Peatland	MAAQVEVARKIVSVNPATGEVLRELDCAGEREVRAAVARARAAQTA
Ga0187808_104392811	3300017942	Freshwater Sediment	MATDLQIAARKVVPVNPATGEVLRQFECADENEVSAAVAR
Ga0187879_108473931	3300017946	Peatland	MVTDQQVAARKISSVNPATGEVLRELDCANEGEVHS
Ga0187782_101043343	3300017975	Tropical Peatland	MSPDLQTAARTISSVNPATGAVLREFACIGDAEVGAAVA
Ga0187823_102981041	3300017993	Freshwater Sediment	MATDLQIAPRIVASVNPATGELLRELTCSFEPDVREAI
Ga0187873_10552053	3300018013	Peatland	MASELQVGARKVASVNPATGEVLRELECAGESEVRAAVA
Ga0187857_102350582	3300018026	Peatland	MVTDIHIAARKVSSVNPATGKMLRELECASESEVQAAV
Ga0187867_1000062728	3300018033	Peatland	MTTQLQVAVRKIFSVNPATGEVLRELECVGESEVRAVVARAQAAQQA
Ga0187855_103506611	3300018038	Peatland	MATDLQTTARKISSVNPATSELLRELECASEADVQGAVARA
Ga0187890_108484952	3300018044	Peatland	MATDLEVARKIASVNPSTGEILRKLACAGEREVQEAV
Ga0187851_106401441	3300018046	Peatland	MATDLQIAARKIASVNPATGEVLRELECVDERQVEAAV
Ga0187858_108806171	3300018057	Peatland	MATDLQIAARKIVVVNPANGAVLRELECAGEVEVLAAVDRARS
Ga0187772_101402791	3300018085	Tropical Peatland	MATDVQIAAPKVVSVNPASGQVLREFESATDQEVHAAVSRAR
Ga0187771_117473321	3300018088	Tropical Peatland	LREMATSLDAAVGKVASVNPATGETLCELPCAWEGEVRAAVARARA
Ga0066662_103653503	3300018468	Grasslands Soil	MASDLQIAARKIVSVNPATGEVLRQLDCAGEGDVLAAVARATAAHAA
Ga0066662_124874622	3300018468	Grasslands Soil	MATDLQIASRRIVSLNPATGEVLREIECAGESEVLA
Ga0193729_10781323	3300019887	Soil	MATDLQVDVPKIVSVNPATGTVLRELGCAGENDVLAAVARARAAQGMWAE
Ga0193734_10151081	3300020015	Soil	MANDLQIAARKIASTNPATGATLREFECTSELEVQAAVARA
Ga0210401_112931262	3300020583	Soil	MVTDLQIGVRKVSSVNPATGEVLREFECANEVEVRAVVARA
Ga0210406_107586661	3300021168	Soil	MATDLQIAVPRIASVNPATGEILRELQCAGEDAVC
Ga0210405_110319202	3300021171	Soil	LIVATDLQIAARKVSSVNPATGAVLRELECANESEVRAVVARARR
Ga0210405_113918962	3300021171	Soil	MVTGLQVAVRKIVSTNPATGEALREFECASGPEVQ
Ga0210388_112665951	3300021181	Soil	MATDLQVTTRKVASVNPATGETLREFEAAADAEVHAT
Ga0210383_109096341	3300021407	Soil	MATDLQVGARRVSSVNPATGEILGELECAGESEMLAAVAL
Ga0210383_113404441	3300021407	Soil	MTTGIQIAVRKVSSVNPATGEVLRELECASESDVLA
Ga0210384_114062622	3300021432	Soil	MATDIQIAVRKVSSVNPATGEVLRELECAGDREVQAAVGRARAAQL
Ga0210402_111504732	3300021478	Soil	MGTDLQIAAGKVVSTNPATGETLREFDCAAEAGVQSAVSRA
Ga0210409_108186641	3300021559	Soil	MATDLQIAARKIVSVNPATGEVLREFECAGEDEVG
Ga0126371_106091352	3300021560	Tropical Forest Soil	MATHLPIGSKVASVNPATGEILREFDCAGESEVLTAVERARAAQ
Ga0247668_11253441	3300024331	Soil	MATDLQIVARKLTPVNPATGEILRELECAGEDEVLA
Ga0208686_10356433	3300025500	Peatland	MVTDQQVAARKISSVNPATGEVLRELDCANEGEVHSAVARARSAQAD
Ga0208044_11651972	3300027625	Peatlands Soil	MVTDLQIAARKVVSVNPATGETLREFECASERDVQAAVAR
Ga0208044_11738911	3300027625	Peatlands Soil	MATDLQIAARKIASLNPATGEVLREFECAGEGEVQAVVARA
Ga0209422_10286741	3300027629	Forest Soil	MTTDLQIAARRVSSVNPATGETLGEWECAGEAEVRAAVARAQSA
Ga0209139_100759181	3300027795	Bog Forest Soil	MATDAQVVVRKVVSVNPAIGGTLGEFDCTGDAEVRAAVEH
Ga0209274_100971041	3300027853	Soil	MVTDLHIAARKVSSVNPATGEVLHEFECAGEDEVQAAVARAQAAQ
Ga0209275_103554613	3300027884	Soil	MASDLQIAARRLASVNPATGEVLRELDCAGEGEVEAAVTRARVA
Ga0209583_102416412	3300027910	Watersheds	MATDIKIAIRKVASINPATGEVLREFESASEEQVYAVV
Ga0209698_101476113	3300027911	Watersheds	MATDLQIAARKVVPVNPATGEVLRELECAGESEVRD
Ga0265353_10014583	3300028015	Soil	MVTDLQIAARKVVSVNPATGETLREFECASEQDVQSAVARAR
Ga0302222_104315562	3300028798	Palsa	MATDLQITARKVASVNPATGEVLRELECAGQSEVDGAVARARVDQTAWAG
Ga0311361_100055251	3300029911	Bog	MATDLQIAVHKVVSVNPATGAVLRELECASDGEVHAAVGRARVAQV
Ga0311352_110239101	3300029944	Palsa	MATDLQIAVRKVSSINPATGKVLRDFECASENEVCAAIVRARAAQAAW
Ga0311371_104779421	3300029951	Palsa	MATDLQIAVRRVSSVNPATGEVLRELECASEKEVLAVV
Ga0311342_110264772	3300029955	Bog	MATGSQIAVRKVSSVNPATGAVLRELECASESEVQGAVARARA
Ga0302176_100421773	3300030057	Palsa	MIAMATDLHIAARRISSVNPSTGALLRDFECAAESEVLEAVARARAAQRAW
Ga0310037_101218222	3300030494	Peatlands Soil	MATDVQIVAPRISSLNPATGEVLRELDCAGEPEVQAAVAGARLAQT
Ga0310038_104330121	3300030707	Peatlands Soil	MATDLQIAARKIASGKIASVNPATGEILRELDCAGELEVLAAVERARSAQPA
Ga0310038_104954942	3300030707	Peatlands Soil	MATDLQIAARKVSSVNPATGEVLRELECAGDSEVQAAVARARAAQAA
Ga0170834_1007621221	3300031057	Forest Soil	VMATDLQIAIGKVSSVNPATGEVLREFECMGEGEVIAAVARARAAQRAW
Ga0170834_1029875344	3300031057	Forest Soil	MASDLQFAWREIVSLNPATGEVLRVLECANVAGVCDAV
Ga0302324_1008990612	3300031236	Palsa	MATGSQIAVRKVSSVNPATGAVLRELECASESEVQGAVARAR
Ga0170818_1029808162	3300031474	Forest Soil	MATDLRIAARKIVSVNPATGKVLRELECAGEGDVL
Ga0307476_105366911	3300031715	Hardwood Forest Soil	VATDLQIAVRKVSSVNPATGEVLREFECANEVEVRAVVARVRAAQSAWAEIGVRSR
Ga0307469_107523182	3300031720	Hardwood Forest Soil	MPTDLELAARTVASVNPATGEILRELECASDATVQTAVA
Ga0307468_1009902002	3300031740	Hardwood Forest Soil	MATDLHIGIRKVISINPATGEVLRELECATDAEVQVAVGRARAAQ
Ga0307468_1011999352	3300031740	Hardwood Forest Soil	MASEVQVGAGKIVSVNPATGEILREIECADESEVLAAVERARIAHASWAD
Ga0307478_107103231	3300031823	Hardwood Forest Soil	MASDVQIAARKVSSVNPATGAVLRELECASESEVRAVLVRA
Ga0214473_121758252	3300031949	Soil	MATDVQVSAARIASTNPATGEVLREFECASAAEVQAAVA
Ga0307479_111136372	3300031962	Hardwood Forest Soil	MATDLQIGARKVVPVNPATGEVLRELECAGEDEVRDAVLRARSAQA
Ga0310911_102080902	3300032035	Soil	MATDLQVAVGKIQSVNPATGEVLRELDCAAETEIAAAVERA
Ga0307470_100194443	3300032174	Hardwood Forest Soil	MATDLQIAARKIVSVNPATGEVLRELECASEGDILAAVTRARP
Ga0307471_1001243671	3300032180	Hardwood Forest Soil	MATDLHIGIRKVISINPATGEVLRELECATDAEVQVAVG
Ga0348332_114726851	3300032515	Plant Litter	MVIDIATKTKTASVNPATGEVLRELECASEAEVLAAVARARAAQVQW
Ga0335085_108506682	3300032770	Soil	LIILVTDAQIAARKIVSVNPATGEVLREVECASDGDVLAAVGRA
Ga0335085_122289892	3300032770	Soil	MATDVQLAVRKVVSINPATGAVLREFACAGPDEVQAAVALARSAQQP
Ga0335079_115812362	3300032783	Soil	MATDLQIMARKIASVNPATGEVLRELDCASDADVRAAVEKA
Ga0335079_119103122	3300032783	Soil	MVTDLQIVARKLAPVNPATGEILRELECAGEEEVQAVVER
Ga0335078_119294641	3300032805	Soil	MPTEVQAAVRKVVSVNPATGEILRQFEPASEYQVRAA
Ga0335080_115958322	3300032828	Soil	MATHLQIASKLVSVNPATGEVLREFECAGESEVLAAVERAR
Ga0314866_002904_1_132	3300033807	Peatland	MATDIQVAPRLISSLNPATGELLRELDCAGTAEVEAAVARARSA
Ga0371488_0022845_4364_4501	3300033983	Peat Soil	MASELQVAVRKVASVNPATGEVLRELECAGETEVRAAVARARAAQA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F063884

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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