Metagenome / Metatranscriptome Family F063825

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F063825
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	72 residues
Representative Sequence	MRLLVFDDPTLPGRYEWLIDDGGDVHEPMRALARQAYRRNKRPLPDEGLAERLRAHSTVDARPYAPPQAT
Number of Associated Samples	107
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	33.33 %
% of genes near scaffold ends (potentially truncated)	55.81 %
% of genes from short scaffolds (< 2000 bps)	88.37 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.78

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (51.163 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.729 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.837 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.45% β-sheet: 15.31% Coil/Unstructured: 62.24%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.78
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.78
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
d.14.1.0: automated matches	d2cz9a1	2cz9	0.60626
c.55.1.4: Glycerol kinase	d2p3ra3	2p3r	0.6052
d.14.1.5: GHMP Kinase, N-terminal domain	d1kkha1	1kkh	0.5981
f.69.1.1: Perfringolysin N-terminal-like	d1pfoa1	1pfo	0.59628
d.15.5.1: Staphylokinase/streptokinase	d2saka_	2sak	0.59429

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF02515	CoA_transf_3	12.40
PF13466	STAS_2	6.98
PF04545	Sigma70_r4	4.65
PF07690	MFS_1	3.88
PF13412	HTH_24	1.55
PF03971	IDH	1.55
PF09348	DUF1990	1.55
PF00400	WD40	0.78
PF00353	HemolysinCabind	0.78
PF05977	MFS_3	0.78
PF04542	Sigma70_r2	0.78
PF00892	EamA	0.78
PF13302	Acetyltransf_3	0.78
PF02073	Peptidase_M29	0.78
PF04337	DUF480	0.78
PF09490	CbtA	0.78
PF01904	DUF72	0.78
PF16655	PhoD_N	0.78
PF13450	NAD_binding_8	0.78
PF13649	Methyltransf_25	0.78
PF07883	Cupin_2	0.78
PF00639	Rotamase	0.78
PF13419	HAD_2	0.78
PF00561	Abhydrolase_1	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	12.40
COG2838	Monomeric isocitrate dehydrogenase	Energy production and conversion [C]	1.55
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.78
COG0760	Peptidyl-prolyl isomerase, parvulin family	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.78
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.78
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.78
COG2309	Leucyl aminopeptidase (aminopeptidase T)	Amino acid transport and metabolism [E]	0.78
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.78
COG3132	Uncharacterized conserved protein YceH, UPF0502 family	Function unknown [S]	0.78
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.16 %
All Organisms	root	All Organisms	48.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.16 %
cellular organisms	root	All Organisms → cellular organisms	48.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.29 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.16 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.98 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.55 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.16 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	33.33 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.16 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	9.30 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.75 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	1.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.16 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4.65 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	3.10 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.33 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	1.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.55 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.78 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.16 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	3.10 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.33 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	2.33 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.55 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.78 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.16 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	3.10 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2.33 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	2.33 %
unclassified Nitrososphaeraceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae	1.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.55 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.16 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	3.10 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	2.33 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	1.55 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.55 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.78 %
Streptomyces poonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces poonensis	0.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.16 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	3.10 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	2.33 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.55 %
Solirubrobacter sp. CPCC 204708	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	0.78 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	0.78 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.78 %
Streptomyces poonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces poonensis	0.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.78 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001686\|C688J18823_10231772	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300001686\|C688J18823_10420482	Not Available	863	Open in IMG/M
3300002568\|C688J35102_117984966	Not Available	520	Open in IMG/M
3300002568\|C688J35102_119986227	Not Available	836	Open in IMG/M
3300002568\|C688J35102_120836701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1753	Open in IMG/M
3300002568\|C688J35102_120845781	Not Available	1794	Open in IMG/M
3300002568\|C688J35102_120929450	All Organisms → cellular organisms → Bacteria	2473	Open in IMG/M
3300004081\|Ga0063454_100041095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1744	Open in IMG/M
3300004081\|Ga0063454_101724650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300004463\|Ga0063356_104004304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces poonensis	634	Open in IMG/M
3300004479\|Ga0062595_101110489	Not Available	692	Open in IMG/M
3300005093\|Ga0062594_102513523	Not Available	566	Open in IMG/M
3300005329\|Ga0070683_101106960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	761	Open in IMG/M
3300005332\|Ga0066388_103467085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	805	Open in IMG/M
3300005335\|Ga0070666_11171088	Not Available	572	Open in IMG/M
3300005340\|Ga0070689_101404113	Not Available	631	Open in IMG/M
3300005341\|Ga0070691_10316199	Not Available	857	Open in IMG/M
3300005341\|Ga0070691_10714019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	603	Open in IMG/M
3300005347\|Ga0070668_100141553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1939	Open in IMG/M
3300005354\|Ga0070675_101147033	Not Available	715	Open in IMG/M
3300005355\|Ga0070671_100216189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1626	Open in IMG/M
3300005366\|Ga0070659_100289947	Not Available	1363	Open in IMG/M
3300005437\|Ga0070710_10483508	Not Available	845	Open in IMG/M
3300005457\|Ga0070662_101006169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	714	Open in IMG/M
3300005466\|Ga0070685_11535472	Not Available	514	Open in IMG/M
3300005530\|Ga0070679_101727533	Not Available	574	Open in IMG/M
3300005545\|Ga0070695_100107896	Not Available	1885	Open in IMG/M
3300005545\|Ga0070695_100429336	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1008	Open in IMG/M
3300005615\|Ga0070702_100065689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2126	Open in IMG/M
3300005616\|Ga0068852_100208482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1853	Open in IMG/M
3300005718\|Ga0068866_10065256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1904	Open in IMG/M
3300005841\|Ga0068863_100372858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1393	Open in IMG/M
3300006046\|Ga0066652_100139779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2015	Open in IMG/M
3300006196\|Ga0075422_10217569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	791	Open in IMG/M
3300006845\|Ga0075421_101975138	Not Available	622	Open in IMG/M
3300006847\|Ga0075431_101551243	Not Available	620	Open in IMG/M
3300006853\|Ga0075420_100653516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	907	Open in IMG/M
3300006880\|Ga0075429_100248364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1558	Open in IMG/M
3300006903\|Ga0075426_11393521	Not Available	532	Open in IMG/M
3300006954\|Ga0079219_11759366	Not Available	577	Open in IMG/M
3300006969\|Ga0075419_11326785	All Organisms → cellular organisms → Bacteria → Terrabacteria group	535	Open in IMG/M
3300007790\|Ga0105679_10033576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1305	Open in IMG/M
3300009094\|Ga0111539_11460180	Not Available	793	Open in IMG/M
3300009148\|Ga0105243_10113952	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2268	Open in IMG/M
3300009156\|Ga0111538_10743204	Not Available	1242	Open in IMG/M
3300009156\|Ga0111538_12973687	Not Available	592	Open in IMG/M
3300009177\|Ga0105248_10498631	Not Available	1373	Open in IMG/M
3300009553\|Ga0105249_10379167	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300009789\|Ga0126307_10029521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4210	Open in IMG/M
3300009840\|Ga0126313_10002026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11090	Open in IMG/M
3300009840\|Ga0126313_10793814	Not Available	770	Open in IMG/M
3300009840\|Ga0126313_11686099	Not Available	529	Open in IMG/M
3300010039\|Ga0126309_10605080	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300010040\|Ga0126308_11213013	Not Available	534	Open in IMG/M
3300010041\|Ga0126312_11299234	Not Available	538	Open in IMG/M
3300010042\|Ga0126314_10246270	Not Available	1267	Open in IMG/M
3300010044\|Ga0126310_10066423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2069	Open in IMG/M
3300010045\|Ga0126311_10098240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2004	Open in IMG/M
3300010152\|Ga0126318_11187520	Not Available	533	Open in IMG/M
3300010360\|Ga0126372_13281636	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300010397\|Ga0134124_10310530	Not Available	1473	Open in IMG/M
3300010399\|Ga0134127_10111472	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2418	Open in IMG/M
3300010400\|Ga0134122_11422384	Not Available	708	Open in IMG/M
3300012355\|Ga0137369_10981567	Not Available	561	Open in IMG/M
3300012360\|Ga0137375_10271405	Not Available	1552	Open in IMG/M
3300012469\|Ga0150984_117556977	Not Available	525	Open in IMG/M
3300012906\|Ga0157295_10213446	Not Available	624	Open in IMG/M
3300012987\|Ga0164307_10525438	Not Available	899	Open in IMG/M
3300013306\|Ga0163162_10360968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1586	Open in IMG/M
3300013307\|Ga0157372_11719549	Not Available	722	Open in IMG/M
3300014326\|Ga0157380_10649945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1052	Open in IMG/M
3300014745\|Ga0157377_11277414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300015371\|Ga0132258_11048956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2060	Open in IMG/M
3300017965\|Ga0190266_10700179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	632	Open in IMG/M
3300018422\|Ga0190265_10505276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1321	Open in IMG/M
3300018422\|Ga0190265_12600418	Not Available	604	Open in IMG/M
3300019356\|Ga0173481_10693661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300020070\|Ga0206356_11424170	Not Available	642	Open in IMG/M
3300024055\|Ga0247794_10224034	Not Available	614	Open in IMG/M
3300024055\|Ga0247794_10340754	All Organisms → cellular organisms → Bacteria → Terrabacteria group	511	Open in IMG/M
3300024430\|Ga0196962_10001349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	8424	Open in IMG/M
3300025321\|Ga0207656_10325228	Not Available	764	Open in IMG/M
3300025898\|Ga0207692_10340278	Not Available	923	Open in IMG/M
3300025899\|Ga0207642_10888536	Not Available	570	Open in IMG/M
3300025900\|Ga0207710_10235735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300025900\|Ga0207710_10370500	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300025913\|Ga0207695_11029783	Not Available	703	Open in IMG/M
3300025921\|Ga0207652_10733862	Not Available	880	Open in IMG/M
3300025923\|Ga0207681_11105888	Not Available	666	Open in IMG/M
3300025927\|Ga0207687_10042677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3122	Open in IMG/M
3300025927\|Ga0207687_10552770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	966	Open in IMG/M
3300025928\|Ga0207700_10648776	All Organisms → cellular organisms → Bacteria → PVC group	941	Open in IMG/M
3300025935\|Ga0207709_10044205	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2690	Open in IMG/M
3300025936\|Ga0207670_11359015	Not Available	603	Open in IMG/M
3300025940\|Ga0207691_11298013	Not Available	601	Open in IMG/M
3300025942\|Ga0207689_10523978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	994	Open in IMG/M
3300025981\|Ga0207640_12195738	Not Available	501	Open in IMG/M
3300026142\|Ga0207698_10184326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1853	Open in IMG/M
3300027907\|Ga0207428_10190952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1544	Open in IMG/M
3300028589\|Ga0247818_11302721	Not Available	521	Open in IMG/M
3300028589\|Ga0247818_11398264	Not Available	505	Open in IMG/M
3300028596\|Ga0247821_10859905	Not Available	601	Open in IMG/M
3300028704\|Ga0307321_1033338	Not Available	940	Open in IMG/M
3300028705\|Ga0307276_10005628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2043	Open in IMG/M
3300028707\|Ga0307291_1186264	Not Available	534	Open in IMG/M
3300028717\|Ga0307298_10079290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	920	Open in IMG/M
3300028717\|Ga0307298_10253424	Not Available	523	Open in IMG/M
3300028721\|Ga0307315_10024812	Not Available	1573	Open in IMG/M
3300028722\|Ga0307319_10047982	Not Available	1338	Open in IMG/M
3300028768\|Ga0307280_10300149	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	586	Open in IMG/M
3300028778\|Ga0307288_10211803	Not Available	749	Open in IMG/M
3300028784\|Ga0307282_10267782	Not Available	822	Open in IMG/M
3300028784\|Ga0307282_10314605	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	755	Open in IMG/M
3300028793\|Ga0307299_10237803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	684	Open in IMG/M
3300028875\|Ga0307289_10456998	Not Available	525	Open in IMG/M
3300030336\|Ga0247826_10028316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2818	Open in IMG/M
3300031852\|Ga0307410_11915756	Not Available	528	Open in IMG/M
3300031901\|Ga0307406_10397978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1091	Open in IMG/M
3300031901\|Ga0307406_10931808	Not Available	741	Open in IMG/M
3300031903\|Ga0307407_10772328	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300031903\|Ga0307407_11075457	Not Available	624	Open in IMG/M
3300031939\|Ga0308174_10339621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1195	Open in IMG/M
3300031995\|Ga0307409_101148019	Not Available	799	Open in IMG/M
3300031995\|Ga0307409_101606591	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300031995\|Ga0307409_102094498	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300032002\|Ga0307416_101785959	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300032126\|Ga0307415_102285654	Not Available	530	Open in IMG/M
3300033550\|Ga0247829_10842497	Not Available	763	Open in IMG/M
3300034147\|Ga0364925_0033354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1700	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.91%
Host-Associated	Host-Associated	41.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.14%
Plants	Host-Associated → Plants	41.09%
Aquatic	Environmental → Aquatic	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.53%
Freshwater	Environmental → Aquatic → Freshwater	0.78%
Floodplain	Environmental → Terrestrial → Floodplain	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.58%
Loam	Environmental → Terrestrial → Soil → Loam	18.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.98%
Sand	Environmental → Terrestrial → Soil → Sand	1.55%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.78%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.88%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.55%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.78%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.73%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.53%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	7.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	7.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.10%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.33%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.33%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.33%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.55%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.78%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.78%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J18823_102317721	3300001686	Soil	MRLLVFDDPALQEPYEWLVEDGGDVHDAMRALARQAYRRNRRELPDDAVEDQLRAFGRVDARRYVPPA*
C688J18823_104204821	3300001686	Soil	TLPGRYEWLIDDRGDVHEPMRALARQAYRRNNRPLPDEGLAERLRAHSTVDARPYAPPQAT*
C688J35102_1179849661	3300002568	Soil	VILLVFDDPMLAGRYEWLVDERDDLHAAMRALARQAYRRNRRHPPEERLAEQLRAHGSVDAHPYVP
C688J35102_1199862272	3300002568	Soil	MRLLVFDDPTLPGRYEWLIDDSGDVHEPMRALARQAYRRNHRPLPDEGLADRLRAHSTVDARPYAPPQAS*
C688J35102_1208367012	3300002568	Soil	MRLLTFDDPQLDGRYEWLIEDGGNVHVAMRALARQAYRRNRRELHDVNLFERLRAHGRVDARPYLPPGAVPHV*
C688J35102_1208457811	3300002568	Soil	AGRGGAPRGSLGLGAGNAASTANVASMRLLVFDDPTLPGRYEWLIDDRGDVHEPMRALARQAYRRNNRPLPDEGLAERLRAHSTVDARPYAPPQAT*
C688J35102_1209294502	3300002568	Soil	MRVLVFDDPMLQGQYEWLLEDGDDVHRAMRALARQAYRRNRRELPEERVVDQLRAHATIDARPYVPPSAA*
Ga0063454_1000410953	3300004081	Soil	CMRLLVFDDPTLPGRYEWLIDDSGDVHEPMRALARQAYRRNHRQLPDEGLTDRLRAHSTVDARPYAPPQAT*
Ga0063454_1017246502	3300004081	Soil	PQLDGRYEWLIEDGGNVHVAMRALARQAYRRNRRELHDVNLFERLRAHGRVDARPYLPPGAVPHV*
Ga0063356_1040043042	3300004463	Arabidopsis Thaliana Rhizosphere	MRLLTFDDPLLDSRYDWLIEDGGNVHLAMRALARQAYRRNRRDVPDVGLSERLRAHGKVDARPYLPPEAPLPAR*
Ga0062595_1011104891	3300004479	Soil	MKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHST
Ga0062594_1025135231	3300005093	Soil	MKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0070683_1011069602	3300005329	Corn Rhizosphere	GMRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV*
Ga0066388_1034670851	3300005332	Tropical Forest Soil	MRVLVFDDPQLQEPYEWLLDDGDDVHGAMKALARQSYRRNRRELPEESLVDHLRAHGRVDARP
Ga0070666_111710881	3300005335	Switchgrass Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPSGT*
Ga0070689_1014041131	3300005340	Switchgrass Rhizosphere	ACFHRAGTAASSANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0070691_103161991	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	GTAASIANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0070691_107140191	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV*
Ga0070668_1001415535	3300005347	Switchgrass Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHATMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPSGT*
Ga0070675_1011470331	3300005354	Miscanthus Rhizosphere	NVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0070671_1002161891	3300005355	Switchgrass Rhizosphere	MRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPY
Ga0070659_1002899473	3300005366	Corn Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHATMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0070710_104835081	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGI*
Ga0070662_1010061692	3300005457	Corn Rhizosphere	GAERERSGMRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV*
Ga0070685_115354722	3300005466	Switchgrass Rhizosphere	MRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPG
Ga0070679_1017275332	3300005530	Corn Rhizosphere	TLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0070695_1001078961	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDVHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0070695_1004293362	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPP
Ga0070702_1000656891	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	RERSGMRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV*
Ga0068852_1002084821	3300005616	Corn Rhizosphere	SVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0068866_100652561	3300005718	Miscanthus Rhizosphere	ERSGMRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV*
Ga0068863_1003728581	3300005841	Switchgrass Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHG
Ga0066652_1001397792	3300006046	Soil	VPGMRLLVFDDPTLPGRYEWLIDDSGDVHEPMRALARQAYRRNHRPLPDEGLADRLRAHSTVDARPYAPPQAS*
Ga0075422_102175692	3300006196	Populus Rhizosphere	VFDDPALPDRYEWLIEDGGDLHESMRALARQSYRRNRRRLPDEALIDRLRAHSTVDARPYAPPHAT*
Ga0075421_1019751382	3300006845	Populus Rhizosphere	VLVFDDPTLPGRYEWLIDDGGDLHATMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPSGA*
Ga0075431_1015512432	3300006847	Populus Rhizosphere	YEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPSGA*
Ga0075420_1006535162	3300006853	Populus Rhizosphere	MRLLVFDDPALPDRYEWLIEDGGDLHESMRALARQSYRRNRRRLPDEALIDRLRAHSTVDARPYAPPHAT*
Ga0075429_1002483642	3300006880	Populus Rhizosphere	MRLLVFDDPALPDRYEWLMEDGGDLHESMRALARQSYRRNRRRLPDEALIDRLRAHSTVDARTYAPPHAT*
Ga0075426_113935212	3300006903	Populus Rhizosphere	NVSVMKVLVFDDPTLPGRYEWLIDDGGDLHATMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPSGA*
Ga0079219_117593662	3300006954	Agricultural Soil	MRLLTFDDPQLDGRYEWLIEDGGNVHLAMRALARQAYRRNRRELPDGSLSERLRAHGRVDARPYHPPGRRPLVT*
Ga0075419_113267852	3300006969	Populus Rhizosphere	VFDDPALPDRYEWLIEDGGDLHESMRALARQSYRRNRRRLPDEALIDRLRAHSTVDARPYAPPH
Ga0105679_100335762	3300007790	Soil	MRVLAFDDPVLENRYEWLIEDGGNVHEAMRALARQAYRRNRRHLPEERLADQLRAHGTVDARPYLPPVPQQVHT*
Ga0111539_114601801	3300009094	Populus Rhizosphere	RYEWLIEDGGDLHESMRALARQSYRRNRRRLPDEALIDRLRAHSTVDARPYAPPHAT*
Ga0105243_101139521	3300009148	Miscanthus Rhizosphere	PGACFHRAGTAASSANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0111538_107432043	3300009156	Populus Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHATMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPSGA*
Ga0111538_129736872	3300009156	Populus Rhizosphere	ARIVWSMRLLVFDDPALPDRYEWLIEDGGDLHESMRALARQSYRRNRRRLPDEALIDRLRAHSTVDARPYAPPHAT*
Ga0105248_104986311	3300009177	Switchgrass Rhizosphere	ASSANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPSGT*
Ga0105249_103791671	3300009553	Switchgrass Rhizosphere	MRRLTFDDPHVDGGYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV*
Ga0126307_100295215	3300009789	Serpentine Soil	MKLLVFDDPTLPERYEWLIDDRGDLHDSMRALARQSYRRNRRPIPDDGLAERLRAHSTVDARPYAPPHTT*
Ga0126313_100020264	3300009840	Serpentine Soil	MRLLVFDDPTLPGRYEWLIDDGGDVHEPMRALARQAYRRNKRPLPDEGLAERLRAHSTVDARPYAPPQAT*
Ga0126313_107938142	3300009840	Serpentine Soil	MRLLVFDDPTLPGRYEWLIDDSGDVHEPMRALARQAYRRNRRPLPEEGLADRLRAHSTVDARPYAPPQAT*
Ga0126313_116860992	3300009840	Serpentine Soil	VKLLVFDDPDLQGPHEWLVDDRDVHAAMRALAKQAYRRARRTLPEGMLDARLRAHGTVDARPYEPPATAA*
Ga0126309_106050802	3300010039	Serpentine Soil	MRLLTFDDPQLDGRYDWLIEDGGNVHVAMRALARQAYRRNRRELHDVNLSDRLRAHGRVDARPYLPPGAVPHL*
Ga0126308_112130132	3300010040	Serpentine Soil	MRLLVFDDPTLPGRYEWLIDDGGDVHEPMRALARQAYRRNKRPLPDEGLAERLRAHSTVDARPY
Ga0126312_112992341	3300010041	Serpentine Soil	DDPQLDSRYEWLMEESGNVHVTMRALARQAYRRNRRHLPEVALADRLRAHGTVDARPYMPPAAFGSTR*
Ga0126314_102462701	3300010042	Serpentine Soil	RYEWLIDDGGDVHEPMRALARQAYRRNKRPLPDEGLAERLRAHSTVDARPYAPPQAT*
Ga0126310_100664232	3300010044	Serpentine Soil	MRLLVFDDPTLPGRYEWLIDDGGDVHEPMRALARQAYRRNNRPLPDEGLADRLRAHSTVDARPYAPPQAT*
Ga0126311_100982402	3300010045	Serpentine Soil	MRLLVFDDPTLPGRYEWLIDDGGDVHEPMRALARQAYRRNNRPLPDEGLAERLRAHSTVDARPYAPPQAT*
Ga0126318_111875202	3300010152	Soil	DDPALSGRYEWLVDERDDVHAAMRALARQAYRRNRRHPPEDRLHEQLRAHGSVDAHPYVPPAAA*
Ga0126372_132816361	3300010360	Tropical Forest Soil	MSARAEKCAGVKVLVFDDPTLQEPYEWLLDDGDDMHEAMRALARQSYRRNRRELPEERLDDQLRAHGRIGSRPYVPPPAAA*
Ga0134124_103105301	3300010397	Terrestrial Soil	MKVLVFDDPTLPGRYEWLIDDGGYLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0134127_101114721	3300010399	Terrestrial Soil	WYSPPGACFHRAGTAASSANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0134122_114223841	3300010400	Terrestrial Soil	MRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRDRLRAHGRVDARPYLPPGAVPHV*
Ga0137369_109815672	3300012355	Vadose Zone Soil	MRVLVFDDPQLQEPYEWLLDESDDVHGAMRALARQAYRRNHRELPEESLVDQLRAHGRIDARPYVPPSAA*
Ga0137375_102714052	3300012360	Vadose Zone Soil	MRHLVFNDPSLQGPYEWLVDDTGDVHAAMRALARQAYRRNRRELPEARVVDQLRAHGTIDARPYVPPAVA*
Ga0150984_1175569771	3300012469	Avena Fatua Rhizosphere	DPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0157295_102134461	3300012906	Soil	MRHLVFDDPTLPGRYEWLIEDGGDVHATMRALARQAYRRNRRRLPEEGLAERMRAHSTVDARPYAPPRAV*
Ga0164307_105254382	3300012987	Soil	HRAGTAASSANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT*
Ga0163162_103609681	3300013306	Switchgrass Rhizosphere	MRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPRV*
Ga0157372_117195491	3300013307	Corn Rhizosphere	MRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVD
Ga0157380_106499451	3300014326	Switchgrass Rhizosphere	LDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV*
Ga0157377_112774141	3300014745	Miscanthus Rhizosphere	ERERSGMRHLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV*
Ga0132258_110489561	3300015371	Arabidopsis Rhizosphere	MRVLVFDDPQLQEPYEWLLDDGDDVHGAMKALARQAYRRNRREFSEENLVDRLRAHGRIDARPYNPSSAA*
Ga0190266_107001792	3300017965	Soil	MRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPAAVPHV
Ga0190265_105052762	3300018422	Soil	VFDDPELKGRYEWLVDDPDVHEAMQALARQAYRRNRRVLPDESLFDRLRAHGTVDARPYVPPRAA
Ga0190265_126004182	3300018422	Soil	VRLLVFDDPDLQGPYEWLVDDPDVHEAMRALARQAYRRNRRELPAEALLDRLRAHGTVDASPYVPPQAA
Ga0173481_106936611	3300019356	Soil	VRLLVFDDPALQGPYEWLVDDAGDVHEAMRALARQAYRRNRRELPDYAVVDQLRAHGR
Ga0206356_114241701	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	PPGACFHRAGTAASSANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHATMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT
Ga0247794_102240341	3300024055	Soil	PQLQEPYEWLLDDGDDVHGAMKALARQAYRRNRREFSEENLVDRLRAHGRIDARPYNPSSAA
Ga0247794_103407542	3300024055	Soil	VFDDPALPDRYEWLIEDGGDLHESMRALARQSYRRNRRRLPDEALIDRLRAHSTVDARPYAPPHAT
Ga0196962_100013494	3300024430	Soil	MRLLVFDDPQLDDRYEWLLEDGGNVHVAMRALARQAYRRNRRHLPDVSLTDRLRAHGSVDARPYSPPAEPLVHG
Ga0207656_103252281	3300025321	Corn Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT
Ga0207692_103402782	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGI
Ga0207642_108885361	3300025899	Miscanthus Rhizosphere	SFHRAGTAASIANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHATMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPSGT
Ga0207710_102357352	3300025900	Switchgrass Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHATMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT
Ga0207710_103705001	3300025900	Switchgrass Rhizosphere	ERRERSGMRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV
Ga0207695_110297831	3300025913	Corn Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPSGT
Ga0207652_107338621	3300025921	Corn Rhizosphere	LVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT
Ga0207681_111058881	3300025923	Switchgrass Rhizosphere	MRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDAR
Ga0207687_100426773	3300025927	Miscanthus Rhizosphere	MVLPSGRLFHRAGTAASSANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT
Ga0207687_105527703	3300025927	Miscanthus Rhizosphere	SGMRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV
Ga0207700_106487762	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVD
Ga0207709_100442051	3300025935	Miscanthus Rhizosphere	ANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT
Ga0207670_113590151	3300025936	Switchgrass Rhizosphere	ACFHRAGTAASSANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT
Ga0207691_112980131	3300025940	Miscanthus Rhizosphere	MKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTV
Ga0207689_105239781	3300025942	Miscanthus Rhizosphere	LTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV
Ga0207640_121957381	3300025981	Corn Rhizosphere	MRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPDTRR
Ga0207698_101843261	3300026142	Corn Rhizosphere	SVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT
Ga0207428_101909522	3300027907	Populus Rhizosphere	MRLLVFDDPALPDRYEWLIEDGGDLHESMRALARQSYRRNRRRLPDEALIDRLRAHSTVDARPYAPPHAT
Ga0247818_113027211	3300028589	Soil	MRLLTFDDPLLDSRYDWLIEDGGNVHLAMRALARQAYRRNRRDVPDVGLSERLRAHGRVDARPYLPPEVPLPAR
Ga0247818_113982642	3300028589	Soil	RLLVFDDPALPDRYEWLMEDGGDLHESMRALARQSYRRNRRRLPDEALIDRLRAHSTVDARPYAPPHAT
Ga0247821_108599051	3300028596	Soil	MRLLTFDDPQLDGRYEWLLEDGGNVHVAMRALARQAYRRNRRELHDVNLRERLRAHGRVDARPYLPPGAVPHV
Ga0307321_10333382	3300028704	Soil	VFDDPTLPGRYEWLIDDGGDVHEPMRALARQAYRRNKRTLPDEGLAERLRAHSTVDARPYAPPQAT
Ga0307276_100056282	3300028705	Soil	VFDDPTLPGRYEWLIDDSGDVHEPMRALARQAYRRNHRQLPDEGLTDRLRAHSTVDARPYAPPQAT
Ga0307291_11862641	3300028707	Soil	MVLPFGRLFHRAGTAASIANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT
Ga0307298_100792902	3300028717	Soil	VFDDPTLPGRYEWLIDDGGDVHEPMRALARQAYRRNKRPLPDEGLAERLRAHSTVDARPYAPPQAT
Ga0307298_102534241	3300028717	Soil	MVLPFGRLFHRAGTAASIANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPAEGLAERLRAHSTVDARPYAP
Ga0307315_100248121	3300028721	Soil	LGAGNAASTANVPSMRLLVFDDPTLPGRYEWLIDDGGDVHEPMRALARQAYRRNKRPLPDEGLAERLRAHSTVDARPYAPPQAT
Ga0307319_100479821	3300028722	Soil	AVRGRFGLGAGNAASTANVPSMRLLVFDDPTLPGRYEWLIDDGGDVHEPMRALARQAYRRNKRPLPDEGLAERLRAHSTVDARPYAPPQAT
Ga0307280_103001492	3300028768	Soil	MENVLVMKLLVFDDPTLPDRYDWLIDDRSDVHASMRALARQAYRRNRRGFPKEGLADLLRAHSTVDARPYAPPPP
Ga0307288_102118032	3300028778	Soil	LFHRAGTAASIANVSVMKVLVFDDPTLPGRYEWLIDDGGDLHETMRALARQSYRRNDRPIPVEGLAERLRAHSTVDARPYAPPHGT
Ga0307282_102677821	3300028784	Soil	DPTLPGRYEWLIDDGGDVHEPMRALARQAYRRNKRPLPDEGLAERLRAHSTVDARPYAPPQAT
Ga0307282_103146051	3300028784	Soil	MENVLVMKLLVFDDPTLPDRYDWLIDDRSDVHASMRALARQAYRRNRRGLPKEGLADLLRAHSTVDARPYAPPHP
Ga0307299_102378031	3300028793	Soil	VFDDPTLPGRYEWLIDDGGDVHEPMRALARQAYRRNKRPLPDEGLAERLRAHSTVDARPYAPPQ
Ga0307289_104569981	3300028875	Soil	VFDDPTLPDRCEWLIDDGGDLHASMRALARQSYRRNRQRIPDEALADRLRAHATV
Ga0247826_100283162	3300030336	Soil	MRLLVFDDPALPDRYEWLMEDGGDLHESMRALARQSYRRNRRRLPDEALIDRLRAHSTVDARPYAPPHAT
Ga0307410_119157562	3300031852	Rhizosphere	FDDPQLDSRYEWLMEESGNVHVTMRALARQAYRRNRRHLPEVALADRLRAHGTVDARPYMPPAAFGSTR
Ga0307406_103979781	3300031901	Rhizosphere	MRVLVFDDPQLQEPYEWLLDDGDDVHRAMRALARQAYRRNRRELPEERVIDQLRAHATIDARPY
Ga0307406_109318081	3300031901	Rhizosphere	ANAVAMRLLAFDDPQLDSRYEWLMEESGNVHVTMRALARQAYRRNRRHLPEVALADRLRAHGTVDARPYMPPAAFGSTR
Ga0307407_107723281	3300031903	Rhizosphere	MRLLAFDDPQLDGRYEWLMEETGNVHVTMRALARQAYRRNRRHLPDVALSDRLRAHGTVDARPYVPPAAPPSFT
Ga0307407_110754572	3300031903	Rhizosphere	MRLLAFDDPQLDSRYEWLMEESGNVHVTMRALARQAYRRNRRHLPEVALADRLRAHGTVDARPYMPPAAFGSTR
Ga0308174_103396213	3300031939	Soil	MTKYLRVRLLVFDDPALSGRYEWLVDERDDVHAAMRALARQAYRRNRRHPPEDHLHEQLRAHGSIDAHPYVPPAAA
Ga0307409_1011480192	3300031995	Rhizosphere	VKLLVFDDPDLQGPHEWLVDDRDVHAAMRALAKQAYRRARRTLPEGMLDARLRAHGTVDARPYEPPATAA
Ga0307409_1016065913	3300031995	Rhizosphere	DPQLQEPYEWLLDDGDDVHRAMRALARQAYRRNRRELPEESLIDQLRAHATIDARPYVPPSAA
Ga0307409_1020944982	3300031995	Rhizosphere	MRLLAFDDPQLDGRYEWLMEETGNVHVTMRALARQAYRRNRRHLPDVALSDRLRAHGTVDAR
Ga0307416_1017859593	3300032002	Rhizosphere	MRVLVFDDPQLQEPYEWLLDDGDDVHRAMRALARQAYRRNRRELPEESLIDQLRAHATIDARPYVPPSAA
Ga0307415_1022856541	3300032126	Rhizosphere	MRLLAFDDPQLDSRYEWLMEESGNVHVTMRALARQAYRRNRRHLPEVALADRLRAHGTVDARPYMPPAAF
Ga0247829_108424971	3300033550	Soil	PRAAGGDPPRGENAVAMRLLTFDDPLLDSRYDWLIEDGGNVHLAMRALARQAYRRNRRDVPDVGLSERLRAHGRVDARPYLPPEVPLPAR
Ga0364925_0033354_1_210	3300034147	Sediment	RVLVFDDPQLQEPYEWLLDDSDDVHGAMRALARQAYRRNRRELPEESLVDQLRAHATIDARPYVPPSVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063825

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences