Metagenome Family F063583

Basic Information
Family ID	F063583
Family Type	Metagenome
Number of Sequences	129
Average Sequence Length	49 residues
Representative Sequence	DLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP
Number of Associated Samples	101
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.33 %
% of genes near scaffold ends (potentially truncated)	97.67 %
% of genes from short scaffolds (< 2000 bps)	89.92 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (93.798 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (35.659 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.814 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 89.58% β-sheet: 0.00% Coil/Unstructured: 10.42%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF04480	DUF559	5.43
PF13561	adh_short_C2	4.65
PF13540	RCC1_2	3.88
PF05685	Uma2	3.88
PF13602	ADH_zinc_N_2	3.10
PF00144	Beta-lactamase	3.10
PF02585	PIG-L	1.55
PF00106	adh_short	1.55
PF01627	Hpt	0.78
PF14552	Tautomerase_2	0.78
PF01936	NYN	0.78
PF01906	YbjQ_1	0.78
PF00563	EAL	0.78
PF05726	Pirin_C	0.78
PF04126	Cyclophil_like	0.78
PF13936	HTH_38	0.78
PF12840	HTH_20	0.78
PF00069	Pkinase	0.78
PF02687	FtsX	0.78
PF13531	SBP_bac_11	0.78
PF12710	HAD	0.78
PF13924	Lipocalin_5	0.78
PF13365	Trypsin_2	0.78
PF06114	Peptidase_M78	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	3.88
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.10
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	3.10
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	3.10
COG2367	Beta-lactamase class A	Defense mechanisms [V]	3.10
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	1.55
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.78
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.78
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.78
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.78
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.78
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.78
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.80 %
Unclassified	root	N/A	6.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.80 %
Unclassified	root	N/A	6.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.80 %
Unclassified	root	N/A	6.20 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	31.01 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.40 %
Unclassified	root	N/A	6.20 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.78 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	30.23 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.75 %
Unclassified	root	N/A	6.20 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.10 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.33 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.78 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.78 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.78 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	23.26 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	6.20 %
Unclassified	root	N/A	6.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.10 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	3.10 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	2.33 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.55 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples	0.78 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.78 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.78 %
Ignavibacteriae	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae	0.78 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	22.48 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	6.20 %
Unclassified	root	N/A	6.20 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	3.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.10 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.33 %
Chloroflexi bacterium 13_1_40CM_2_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	0.78 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.78 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	0.78 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.78 %
uncultured Gemmatimonadota bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium	0.78 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.78 %
Ignavibacteria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	22.48 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	6.20 %
Unclassified	root	N/A	6.20 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.10 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.33 %
unclassified Ignavibacteria	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria	0.78 %
Bordetella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Bordetella	0.78 %
Pandoraea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Pandoraea	0.78 %
Alloacidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium	0.78 %
Chloroflexi bacterium 13_1_40CM_2_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	0.78 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	0.78 %
uncultured Gemmatimonadota bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	22.48 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	6.20 %
Unclassified	root	N/A	6.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.10 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.33 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	1.55 %
Bordetella bronchiseptica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Bordetella → Bordetella bronchiseptica	0.78 %
Ignavibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	0.78 %
unclassified Pandoraea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Pandoraea → unclassified Pandoraea	0.78 %
Alloacidobacterium dinghuense	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	0.78 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.78 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.78 %
Chloroflexi bacterium 13_1_40CM_2_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	0.78 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	0.78 %
uncultured Gemmatimonadota bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	22.48 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	6.20 %
Unclassified	root	N/A	6.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.10 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.33 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.55 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.78 %
Gemmatimonas phototrophica	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas phototrophica	0.78 %
Pandoraea sp. B-6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Pandoraea → unclassified Pandoraea → Pandoraea sp. B-6	0.78 %
Bordetella bronchiseptica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Bordetella → Bordetella bronchiseptica	0.78 %
Ignavibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	0.78 %
Alloacidobacterium dinghuense	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	0.78 %
Chloroflexi bacterium 13_1_40CM_2_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	0.78 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	0.78 %
uncultured Gemmatimonadota bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium	0.78 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002908\|JGI25382J43887_10096999	All Organisms → cellular organisms → Bacteria	1563	Open in IMG/M
3300002908\|JGI25382J43887_10304020	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300002911\|JGI25390J43892_10039337	Not Available	1134	Open in IMG/M
3300005175\|Ga0066673_10238085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1051	Open in IMG/M
3300005186\|Ga0066676_10102066	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300005186\|Ga0066676_10449825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	872	Open in IMG/M
3300005444\|Ga0070694_100818281	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	765	Open in IMG/M
3300005445\|Ga0070708_102070756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Bordetella → Bordetella bronchiseptica	526	Open in IMG/M
3300005446\|Ga0066686_10251403	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300005447\|Ga0066689_10532184	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	743	Open in IMG/M
3300005467\|Ga0070706_102102345	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300005468\|Ga0070707_100827791	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300005471\|Ga0070698_100198766	All Organisms → cellular organisms → Bacteria	1941	Open in IMG/M
3300005518\|Ga0070699_100725112	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300005518\|Ga0070699_100730083	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	905	Open in IMG/M
3300005518\|Ga0070699_100842409	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300005526\|Ga0073909_10483616	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300005540\|Ga0066697_10582972	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300005556\|Ga0066707_10141066	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1520	Open in IMG/M
3300005566\|Ga0066693_10438821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Pandoraea → unclassified Pandoraea → Pandoraea sp. B-6	534	Open in IMG/M
3300005586\|Ga0066691_10098679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1637	Open in IMG/M
3300005713\|Ga0066905_100365246	Not Available	1158	Open in IMG/M
3300005904\|Ga0075280_10130656	Not Available	532	Open in IMG/M
3300006031\|Ga0066651_10360785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	779	Open in IMG/M
3300006034\|Ga0066656_11088869	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	513	Open in IMG/M
3300006755\|Ga0079222_10003790	All Organisms → cellular organisms → Bacteria	4829	Open in IMG/M
3300006791\|Ga0066653_10623233	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	550	Open in IMG/M
3300006804\|Ga0079221_10330058	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300006844\|Ga0075428_100657276	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300006844\|Ga0075428_100834531	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300006852\|Ga0075433_11133854	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300006854\|Ga0075425_101108071	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	901	Open in IMG/M
3300006854\|Ga0075425_102582126	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300006903\|Ga0075426_10722176	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	748	Open in IMG/M
3300006904\|Ga0075424_100200717	All Organisms → cellular organisms → Bacteria	2118	Open in IMG/M
3300006904\|Ga0075424_100543359	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300006904\|Ga0075424_100588310	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1188	Open in IMG/M
3300006914\|Ga0075436_100107932	Not Available	1941	Open in IMG/M
3300006914\|Ga0075436_100977656	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	635	Open in IMG/M
3300006954\|Ga0079219_10501779	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300007076\|Ga0075435_100091071	All Organisms → cellular organisms → Bacteria	2516	Open in IMG/M
3300007076\|Ga0075435_100668817	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	902	Open in IMG/M
3300007258\|Ga0099793_10066437	All Organisms → cellular organisms → Bacteria → Proteobacteria	1621	Open in IMG/M
3300009012\|Ga0066710_100304018	All Organisms → cellular organisms → Bacteria	2338	Open in IMG/M
3300009012\|Ga0066710_100442689	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1947	Open in IMG/M
3300009012\|Ga0066710_100672692	All Organisms → cellular organisms → Bacteria	1576	Open in IMG/M
3300009089\|Ga0099828_11501670	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300009089\|Ga0099828_11868892	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	527	Open in IMG/M
3300009090\|Ga0099827_10390654	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300009094\|Ga0111539_12419410	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	609	Open in IMG/M
3300009147\|Ga0114129_10421122	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1756	Open in IMG/M
3300009147\|Ga0114129_11053652	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium	1021	Open in IMG/M
3300009162\|Ga0075423_12149714	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300010320\|Ga0134109_10042214	All Organisms → cellular organisms → Bacteria	1488	Open in IMG/M
3300010322\|Ga0134084_10089371	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300010329\|Ga0134111_10546242	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300010337\|Ga0134062_10713325	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300010371\|Ga0134125_11578437	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	714	Open in IMG/M
3300010373\|Ga0134128_12224526	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	604	Open in IMG/M
3300010399\|Ga0134127_12604871	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	585	Open in IMG/M
3300010403\|Ga0134123_11618033	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300011270\|Ga0137391_10693468	Not Available	847	Open in IMG/M
3300011270\|Ga0137391_10810560	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300011403\|Ga0137313_1015056	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300012096\|Ga0137389_11143160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	667	Open in IMG/M
3300012175\|Ga0137321_1061942	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300012198\|Ga0137364_10566044	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300012199\|Ga0137383_10050125	All Organisms → cellular organisms → Bacteria	2982	Open in IMG/M
3300012199\|Ga0137383_10195087	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	1484	Open in IMG/M
3300012199\|Ga0137383_11048739	Not Available	592	Open in IMG/M
3300012200\|Ga0137382_10951569	Not Available	618	Open in IMG/M
3300012202\|Ga0137363_11741625	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300012203\|Ga0137399_10042873	All Organisms → cellular organisms → Bacteria → Proteobacteria	3229	Open in IMG/M
3300012203\|Ga0137399_10144396	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1894	Open in IMG/M
3300012203\|Ga0137399_10269710	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300012207\|Ga0137381_10431160	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300012208\|Ga0137376_10752859	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300012210\|Ga0137378_10654956	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300012212\|Ga0150985_105197354	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1416	Open in IMG/M
3300012349\|Ga0137387_10555199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	833	Open in IMG/M
3300012350\|Ga0137372_10895953	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300012351\|Ga0137386_10516163	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300012354\|Ga0137366_10620675	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	774	Open in IMG/M
3300012356\|Ga0137371_10814639	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300012356\|Ga0137371_11018743	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300012358\|Ga0137368_10377967	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300012359\|Ga0137385_10048616	All Organisms → cellular organisms → Bacteria → Proteobacteria	3794	Open in IMG/M
3300012362\|Ga0137361_11094501	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	718	Open in IMG/M
3300012363\|Ga0137390_10719611	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	960	Open in IMG/M
3300012469\|Ga0150984_112755966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300012685\|Ga0137397_10355109	Not Available	1092	Open in IMG/M
3300012918\|Ga0137396_11270122	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300012924\|Ga0137413_11194427	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300012925\|Ga0137419_10031121	All Organisms → cellular organisms → Bacteria	3269	Open in IMG/M
3300012925\|Ga0137419_11701968	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300012927\|Ga0137416_10237001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1484	Open in IMG/M
3300012927\|Ga0137416_10853577	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	807	Open in IMG/M
3300012927\|Ga0137416_11806066	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300012944\|Ga0137410_10023236	All Organisms → cellular organisms → Bacteria	4289	Open in IMG/M
3300012944\|Ga0137410_10379137	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1136	Open in IMG/M
3300012972\|Ga0134077_10366205	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	617	Open in IMG/M
3300012976\|Ga0134076_10194838	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	848	Open in IMG/M
3300014154\|Ga0134075_10579512	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	508	Open in IMG/M
3300015241\|Ga0137418_10060676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3462	Open in IMG/M
3300015359\|Ga0134085_10488518	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300017654\|Ga0134069_1100892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	941	Open in IMG/M
3300017657\|Ga0134074_1187171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	732	Open in IMG/M
3300018028\|Ga0184608_10007237	All Organisms → cellular organisms → Bacteria	3662	Open in IMG/M
3300018028\|Ga0184608_10135640	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1053	Open in IMG/M
3300018056\|Ga0184623_10224400	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300018075\|Ga0184632_10005774	All Organisms → cellular organisms → Bacteria	5161	Open in IMG/M
3300021073\|Ga0210378_10038667	All Organisms → cellular organisms → Bacteria	1894	Open in IMG/M
3300024330\|Ga0137417_1010493	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300025917\|Ga0207660_10492200	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	994	Open in IMG/M
3300026118\|Ga0207675_101888003	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	616	Open in IMG/M
3300026320\|Ga0209131_1102550	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1507	Open in IMG/M
3300026320\|Ga0209131_1267737	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	660	Open in IMG/M
3300026327\|Ga0209266_1197367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	736	Open in IMG/M
3300026538\|Ga0209056_10544886	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	592	Open in IMG/M
3300027725\|Ga0209178_1332911	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300027787\|Ga0209074_10141097	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	858	Open in IMG/M
3300028536\|Ga0137415_10108206	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas phototrophica	2629	Open in IMG/M
3300028536\|Ga0137415_10528301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	989	Open in IMG/M
3300028884\|Ga0307308_10332343	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	728	Open in IMG/M
3300031820\|Ga0307473_10097859	All Organisms → cellular organisms → Bacteria	1553	Open in IMG/M
3300031820\|Ga0307473_10130744	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1395	Open in IMG/M
3300032157\|Ga0315912_11389015	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	554	Open in IMG/M
3300032180\|Ga0307471_100976968	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1014	Open in IMG/M
3300033412\|Ga0310810_11486403	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.50%
Host-Associated	Host-Associated	15.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.07%
Plants	Host-Associated → Plants	15.50%
Aquatic	Environmental → Aquatic	5.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.95%
Sediment	Environmental → Aquatic → Sediment	4.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.55%
Freshwater	Environmental → Aquatic → Freshwater	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.18%
Loam	Environmental → Terrestrial → Soil → Loam	8.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.65%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.29%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.18%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.33%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.33%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.08%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.20%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.10%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.33%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.33%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.55%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.78%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.78%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.78%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.78%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005904	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_404	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012175	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F063583

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25382J43887_100969991	3300002908	Grasslands Soil	QEAEAELADLDGRLQEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVRRSP*
JGI25382J43887_103040202	3300002908	Grasslands Soil	DLDGRLKEAQSGRARAEARCRELTAEVERLSAAGEALEALESLVRRSR*
JGI25390J43892_100393373	3300002911	Grasslands Soil	LQEAQSAQARAEARCRELTSEVERLSAAGEALEALESLVNRNR*
Ga0066673_102380853	3300005175	Soil	LKEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0066676_101020663	3300005186	Soil	DLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEGLESLVRRSP*
Ga0066676_104498252	3300005186	Soil	DLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0070694_1008182813	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	KEEQSGRARAEARCRELTAEVERLSAAGEALEALETLVRRSP*
Ga0070708_1020707561	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LQEAEAELADLDGRLKEAQSGRARAEARCRELTSDVERLSAAGAALEALESLVKRNR*
Ga0066686_102514033	3300005446	Soil	GRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0066689_105321841	3300005447	Soil	LLQEAEAELADLDGRLQEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVRRSP*
Ga0070706_1021023453	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	KEAQSGRARAEARCRELTSDVERLSAAGAALEALETLVRRSP*
Ga0070707_1008277912	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	AEAELADLDGRLKEAQSGRARAEARCRELTADVERLSAAGEALEALETLVRRSH*
Ga0070698_1001987662	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	DGRLKEAQSGRTRAEARCRELTADVERLSAAGEALEALETLVRRSP*
Ga0070699_1007251123	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ELADLDGRLKEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSR*
Ga0070699_1007300831	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ADLDGRLKEAQSGRARAEARCRELTSEVERLSAAGEALEALETLVRRSP*
Ga0070699_1008424091	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ADLDGRLKEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVKRNR*
Ga0073909_104836161	3300005526	Surface Soil	GRLKEAQSGRTRAEARCRELTANVERLSAAGEALEALETLVRRSP*
Ga0066697_105829721	3300005540	Soil	LLQEAEAELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0066707_101410661	3300005556	Soil	GRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0066693_104388211	3300005566	Soil	LLQEAEAELADLDGRLQEAQSARARAEARCRELTAEVERLSAAGEALEGLESLVRRSP*
Ga0066691_100986794	3300005586	Soil	EAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0066905_1003652462	3300005713	Tropical Forest Soil	RAEARCRELTADVERLSAASEALEGLESLVRRSH*
Ga0075280_101306561	3300005904	Rice Paddy Soil	LPARAEARCGELVAEVERLSAAGEAIEALEVLMKRGR*
Ga0066651_103607851	3300006031	Soil	EAQSGRARAEARCRELTSDVERLSAAGEALEGLESLVRRSP*
Ga0066656_110888691	3300006034	Soil	EAEAELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0079222_100037907	3300006755	Agricultural Soil	AEAELADLDGRLKEAQSGRTRAEARCRELTADVERLSAAGEALEALETLVRRSQ*
Ga0066653_106232332	3300006791	Soil	SGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0079221_103300582	3300006804	Agricultural Soil	ADLDGRLKEAQSGRARAEARCRELTAEVERLSAAGAALEALESLVRRSP*
Ga0075428_1006572763	3300006844	Populus Rhizosphere	LADLDGRLKEAQSGRTRAEARCRELTADVERLSAAGEALEALESLVKRSH*
Ga0075428_1008345313	3300006844	Populus Rhizosphere	MRQEAELADLDGRLREVQSGRARAEARCRELTSEVERLSAAGEALEALESLVRRSH*
Ga0075433_111338541	3300006852	Populus Rhizosphere	GRLKEAQSGRTRAEARCRELTAEVERLSAAGEALEALETLVRRSP*
Ga0075425_1011080713	3300006854	Populus Rhizosphere	LDGRLKEAQYGRTRAEARCRELTADVERLSAAGEALEALETLVRRSP*
Ga0075425_1025821261	3300006854	Populus Rhizosphere	LQEAEAELADLDGRLKEAQYGRTRAEARCRELTADVERLSAAGEALEALETLVRRRH*
Ga0075426_107221761	3300006903	Populus Rhizosphere	LDGRLKEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVKRNR*
Ga0075424_1002007173	3300006904	Populus Rhizosphere	ARAEARCRELTSEVERLSAAGEALEALETLVRRSP*
Ga0075424_1005433591	3300006904	Populus Rhizosphere	EAELADLDGRLKEAQSGRARAEARCRELTADVERLSAAGEALEALETLVRRSR*
Ga0075424_1005883101	3300006904	Populus Rhizosphere	LKEAQSARARAEARCRELTADVERLSAAGEALEALETLVRRSP*
Ga0075436_1001079321	3300006914	Populus Rhizosphere	DGRLKEAQSGRARAEARCRELTAEVERLSAAGEALEALETLVRRSP*
Ga0075436_1009776562	3300006914	Populus Rhizosphere	DLDGRLKEAQSGRARAEARCRELTADVERLSAAGEALEALETLVRRSP*
Ga0079219_105017792	3300006954	Agricultural Soil	DLDGRLKEAQSGRARAEARCRELTADVERLSAAGEALEALETLVRRSH*
Ga0075435_1000910716	3300007076	Populus Rhizosphere	KEAQSGRTRAEARCRELTADVERLSAAGEALEALETLVRRRH*
Ga0075435_1006688172	3300007076	Populus Rhizosphere	RARAEARCRELTSDVERLSAAGAALEALESLVKRNR*
Ga0099793_100664371	3300007258	Vadose Zone Soil	ARAEARCRELTSEVERLSAAGEALEALESLVRRSP*
Ga0066710_1003040181	3300009012	Grasslands Soil	EAELADLDGRLQEAQSGRARAEARCRELTSEVERLSAAGEALEALESVVKRNR
Ga0066710_1004426891	3300009012	Grasslands Soil	LDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRNH
Ga0066710_1006726921	3300009012	Grasslands Soil	LADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP
Ga0099828_115016701	3300009089	Vadose Zone Soil	EAQSGRARAEARCRELTSEVERLSAAGEALEALESLVKRNR*
Ga0099828_118688922	3300009089	Vadose Zone Soil	LQEAEAELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0099827_103906543	3300009090	Vadose Zone Soil	ADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRNH*
Ga0111539_124194102	3300009094	Populus Rhizosphere	LQEAEAELADLDGRLKEAQSGRTRAEARCRELTADVERLSAAGEALEALESLVKRSH*
Ga0114129_104211223	3300009147	Populus Rhizosphere	RLKEAQSGRTRAEARCRELTSDVERLSAAGEALEALETLVRRSP*
Ga0114129_110536523	3300009147	Populus Rhizosphere	LADLDGRLKEAQSGRARAEARCRELTAEVERLSAAGEALEALETLVRRSP*
Ga0075423_121497141	3300009162	Populus Rhizosphere	AELADLDGRLKEAQSGRTRAEARCRELTADVERLSAAGEALEALESLVKRSH*
Ga0134109_100422143	3300010320	Grasslands Soil	ADLDGRLKEAESGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0134084_100893713	3300010322	Grasslands Soil	LDGRLKEAESGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0134111_105462422	3300010329	Grasslands Soil	RARDLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0134062_107133251	3300010337	Grasslands Soil	DGRLQEAQSARARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0134125_115784371	3300010371	Terrestrial Soil	AQSGRARAEARCRELTADVERLSAAGEALEALETLVRRSP*
Ga0134128_122245261	3300010373	Terrestrial Soil	AELADLDGRLKEAQAGRARAEARCRELTSDVERLSAAGEALEALETLVRRSP*
Ga0134127_126048712	3300010399	Terrestrial Soil	RMQEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVKRNR*
Ga0134123_116180332	3300010403	Terrestrial Soil	ELADLDGRLKEAQSGRARAEARCRELTSDVERLSAAGEALEALETLVRRSP*
Ga0137391_106934681	3300011270	Vadose Zone Soil	LQEAEAELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVKRNR*
Ga0137391_108105601	3300011270	Vadose Zone Soil	LLQEAEAELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVKRNR*
Ga0137313_10150561	3300011403	Soil	TRLQEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVRRSS*
Ga0137389_111431602	3300012096	Vadose Zone Soil	GRARAEARCRELTSDVERLSAAGEALEALESLVTRNR*
Ga0137321_10619422	3300012175	Soil	LLQEAEAELADLDGRLREAQSARARAEARCRELTSEVERLSAAGEALEALESLVRRSS*
Ga0137364_105660441	3300012198	Vadose Zone Soil	QSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0137383_100501254	3300012199	Vadose Zone Soil	LQEAEAELADLDGRLQEAQSGRARAEARCRELTSEVERLSAAGEALETLESLVKRNR*
Ga0137383_101950872	3300012199	Vadose Zone Soil	LQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0137383_110487391	3300012199	Vadose Zone Soil	ALLQEAEAELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVKRNR*
Ga0137382_109515691	3300012200	Vadose Zone Soil	LLQEAEAELADLDTRLQEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVKRNR*
Ga0137363_117416251	3300012202	Vadose Zone Soil	LADLDGRLQEAQSGRARAEARCRELTAEVERLSAAGEALEALESLVRRSP*
Ga0137399_100428735	3300012203	Vadose Zone Soil	MPRDQVLEEMELADLDARLREAQSVRARAEARCRELTSDVERLSATGEALEGLESLVRRNR*
Ga0137399_101443961	3300012203	Vadose Zone Soil	EAQSGRARAEARCRELTSEVERLSAAGEALEALESLVRRSP*
Ga0137399_102697103	3300012203	Vadose Zone Soil	QEAEAELADLDGRLREAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSR*
Ga0137381_104311601	3300012207	Vadose Zone Soil	AQSGRARAEARCRELTSEVERLSAAGEALEALESLVRRSP*
Ga0137376_107528591	3300012208	Vadose Zone Soil	EAELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEGLESLVRRNP*
Ga0137378_106549561	3300012210	Vadose Zone Soil	EAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSH*
Ga0150985_1051973542	3300012212	Avena Fatua Rhizosphere	ELADLDGRLQEAQSARARSEARCRDLTAEVERLSAAGGALEALESLVKRNR*
Ga0137387_105551991	3300012349	Vadose Zone Soil	LDGRLKEAQSGRARADARCRELTSEVERLSAAGEALEALESLVRRSP*
Ga0137372_108959531	3300012350	Vadose Zone Soil	EAELADLDGRLQEAQSGRARADARCRELTSDVERLCATGEALEAL*
Ga0137386_105161631	3300012351	Vadose Zone Soil	GRARAEARCRELTSEVERLSAAGEALEALESLVRRSP*
Ga0137366_106206751	3300012354	Vadose Zone Soil	DLDGRLQEAQSGRARAEARCRELTTDVERLSAAGEALEALESLVRRSP*
Ga0137371_108146392	3300012356	Vadose Zone Soil	EAELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSH*
Ga0137371_110187431	3300012356	Vadose Zone Soil	RLQEAQSGRARAEARCRELTSDVERLSAAGEALEGLESLVRRSP*
Ga0137368_103779671	3300012358	Vadose Zone Soil	LADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0137385_100486167	3300012359	Vadose Zone Soil	RLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0137361_110945013	3300012362	Vadose Zone Soil	AQSGRARAEARCRELTAEVERLSAAGEALEALESLVRRSP*
Ga0137390_107196111	3300012363	Vadose Zone Soil	LDGRLQEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVRRSH*
Ga0150984_1127559662	3300012469	Avena Fatua Rhizosphere	LADLDTRLQEAQSARARAEAQCRELTSEVERLSAAGEALEGLETLVRRGNAVS*
Ga0137397_103551091	3300012685	Vadose Zone Soil	KDAGSANTRCRELTSEVERLSAAGEALEGLESLVKRNR*
Ga0137396_112701222	3300012918	Vadose Zone Soil	QEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVRRSH*
Ga0137413_111944271	3300012924	Vadose Zone Soil	LLQEAEAELADLDGRLKEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0137419_100311216	3300012925	Vadose Zone Soil	EAELADLDGRLHEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVRRSP*
Ga0137419_117019681	3300012925	Vadose Zone Soil	AQSGRARAEARCRELTSEVERLSAAGEALEALESLVRHSH*
Ga0137416_102370011	3300012927	Vadose Zone Soil	QEAEAELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAAEALEALESLVRRSH*
Ga0137416_108535773	3300012927	Vadose Zone Soil	ADLDGRLQEAQSGRARAEARCRELTTEVERLSAAGEALEALESLVRRSP*
Ga0137416_118060662	3300012927	Vadose Zone Soil	DGRLQEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVKRSP*
Ga0137410_100232361	3300012944	Vadose Zone Soil	DGRLQEAQSARARAEARCRELTSEVERLSAAGEALEALESLVRRSP*
Ga0137410_103791373	3300012944	Vadose Zone Soil	LLQEAEAELADLDGRLQEAQSAQARAEARCRELTAEVERLSAAGEALEALESLVRRSP*
Ga0134077_103662052	3300012972	Grasslands Soil	RARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0134076_101948382	3300012976	Grasslands Soil	LQEAEAELADLDGRLQEAQTGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0134075_105795122	3300014154	Grasslands Soil	DGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP*
Ga0137418_100606761	3300015241	Vadose Zone Soil	EAEAELADLDGRLQEAQTGRARAEARCRELTSDVERLSAAGEALEALESLVRRSH*
Ga0134085_104885181	3300015359	Grasslands Soil	AEAELADLDGRLKEAESGRARAEARCRELTSEVERLSAAGEALEALESLVRRSP*
Ga0134069_11008922	3300017654	Grasslands Soil	EAELADLDGRLQEAQSGRARAEARCWELTSDVERLSAAGEALEALESLVRRSP
Ga0134074_11871712	3300017657	Grasslands Soil	LLQEAEAELADLDGRLKEAESGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP
Ga0184608_100072375	3300018028	Groundwater Sediment	LLQEAEAELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSR
Ga0184608_101356401	3300018028	Groundwater Sediment	ESGRARAEARCRELTSDVERLSAAGEALEGLESLVRRSR
Ga0184623_102244002	3300018056	Groundwater Sediment	LQEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVKRSR
Ga0184632_100057741	3300018075	Groundwater Sediment	LQEAEAELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALETLVRRSH
Ga0210378_100386671	3300021073	Groundwater Sediment	AELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSR
Ga0137417_10104932	3300024330	Vadose Zone Soil	EAEAELADLDGRLKEAQLGRARAEARCRELTSEVERLSAAGEALEALESLVRRSP
Ga0207660_104922002	3300025917	Corn Rhizosphere	LDGRLKEAESARARADARCRELTSEVERLSAAGEALEGLESLVRRSP
Ga0207675_1018880032	3300026118	Switchgrass Rhizosphere	EAQSGRARAEARCRELTAEVERLSAAGEALEALESLVKRNR
Ga0209131_11025501	3300026320	Grasslands Soil	ELADLDGRLQEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP
Ga0209131_12677371	3300026320	Grasslands Soil	LLQEAEAELADLDGRLQEAQSDRARAEARCRELTSEVERLSAAGEALEALESLVRRSP
Ga0209266_11973672	3300026327	Soil	QEAQAELADLDGRLQEALSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSP
Ga0209056_105448862	3300026538	Soil	EAEAELADLDGRLQEAQSGRARAEARCRELTSEVERLSAAGEALEALESLVRRSP
Ga0209178_13329112	3300027725	Agricultural Soil	ELADLDGRLKEAQSGRARADARCRELTAEVERLSAAGEALEALETLVRRSP
Ga0209074_101410971	3300027787	Agricultural Soil	LLQEAEAELADLDGRLKEAQSGRTRAEARCRELTADVERLSAAGEALEALETLVRRSQ
Ga0137415_101082065	3300028536	Vadose Zone Soil	EAEAELADLDGRLKEAQSGRARAEARCRELTADVERLSAAGEALEALESLVKHNR
Ga0137415_105283011	3300028536	Vadose Zone Soil	ARAEARCRELTSDVERLSAAGEALEALESLVRRSP
Ga0307308_103323431	3300028884	Soil	AEAERADLDGRLQEAQSARARAEARCRELTAEVERLSAAGEALEALESLVKRSR
Ga0307473_100978592	3300031820	Hardwood Forest Soil	QEAEAELADLDGRLKEAQSGRARAEARCRELTSDVERLSAAGEALEALESLVRRSR
Ga0307473_101307441	3300031820	Hardwood Forest Soil	EAELADLDGRLKEAQSGRTRAEARCRELTSDVERLSAAGAALEALETLVRRNH
Ga0315912_113890151	3300032157	Soil	AEAQLADLDTRLQESESGRARSEARCRELTSEVERLSAAGAALEGLESLVSRPAAPNAS
Ga0307471_1009769681	3300032180	Hardwood Forest Soil	LADLDGRLKEAQSGRARAEARCRELTSDVERLSAAGAALEALETLVRRSH
Ga0310810_114864032	3300033412	Soil	EAQSARARAEARCRELTSEVERLSAAGEALEALESLVKRSR

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign