Metagenome / Metatranscriptome Family F062959

Basic Information
Family ID	F062959
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	46 residues
Representative Sequence	FHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVDGRH
Number of Associated Samples	116
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.92 %
% of genes from short scaffolds (< 2000 bps)	90.77 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Most Common Taxonomy
Group	Bacteria (83.846 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.154 % of family members)
Environment Ontology (ENVO)	Unclassified (22.308 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.923 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.21% β-sheet: 0.00% Coil/Unstructured: 54.79%
Feature Viewer

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Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF01850	PIN	10.77
PF01674	Lipase_2	9.23
PF03259	Robl_LC7	6.92
PF01145	Band_7	5.38
PF01402	RHH_1	3.85
PF04909	Amidohydro_2	2.31
PF00743	FMO-like	2.31
PF01717	Meth_synt_2	1.54
PF04672	Methyltransf_19	1.54
PF13450	NAD_binding_8	1.54
PF00881	Nitroreductase	1.54
PF00534	Glycos_transf_1	0.77
PF02900	LigB	0.77
PF05088	Bac_GDH	0.77
PF02826	2-Hacid_dh_C	0.77
PF00871	Acetate_kinase	0.77
PF13738	Pyr_redox_3	0.77
PF13231	PMT_2	0.77
PF01047	MarR	0.77
PF08447	PAS_3	0.77
PF00561	Abhydrolase_1	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG2018	Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family	Signal transduction mechanisms [T]	6.92
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	2.31
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	1.54
COG0282	Acetate kinase	Energy production and conversion [C]	0.77
COG2902	NAD-specific glutamate dehydrogenase	Amino acid transport and metabolism [E]	0.77
COG3426	Butyrate kinase	Energy production and conversion [C]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.85 %
Unclassified	root	N/A	16.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.85 %
Unclassified	root	N/A	16.15 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.85 %
Unclassified	root	N/A	16.15 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	73.08 %
Unclassified	root	N/A	16.15 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	68.46 %
Unclassified	root	N/A	16.15 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	36.15 %
Unclassified	root	N/A	16.15 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.15 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	5.38 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.85 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	3.08 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	3.08 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3.08 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.15 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	5.38 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.08 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1.54 %
Beutenbergiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Beutenbergiaceae	1.54 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.54 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.77 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.77 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.15 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	5.38 %
Beutenbergia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Beutenbergiaceae → Beutenbergia	1.54 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.54 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1.54 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.77 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.77 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.77 %
unclassified Pseudonocardiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae	0.77 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.15 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.54 %
Beutenbergia cavernae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Beutenbergiaceae → Beutenbergia → Beutenbergia cavernae	1.54 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1.54 %
Pseudonocardiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	0.77 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.77 %
Nocardia miyunensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia miyunensis	0.77 %
Mycolicibacterium agri	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium agri	0.77 %
Streptomyces anthocyanicus group	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces anthocyanicus group	0.77 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.15 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.54 %
Beutenbergia cavernae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Beutenbergiaceae → Beutenbergia → Beutenbergia cavernae	1.54 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1.54 %
Frankia sp. AgB32	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AgB32	0.77 %
Streptomyces tricolor	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces anthocyanicus group → Streptomyces tricolor	0.77 %
Pseudonocardiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	0.77 %
Nocardia miyunensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia miyunensis	0.77 %
Mycolicibacterium agri	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium agri	0.77 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10164618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AgB32	808	Open in IMG/M
3300001452\|JGI20203J14952_1040622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300001867\|JGI12627J18819_10284678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	665	Open in IMG/M
3300005334\|Ga0068869_100422230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1100	Open in IMG/M
3300005336\|Ga0070680_100234950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1548	Open in IMG/M
3300005338\|Ga0068868_100055327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	3130	Open in IMG/M
3300005363\|Ga0008090_14616782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	527	Open in IMG/M
3300005434\|Ga0070709_10800618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	740	Open in IMG/M
3300005434\|Ga0070709_11188400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	612	Open in IMG/M
3300005435\|Ga0070714_100666212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1002	Open in IMG/M
3300005436\|Ga0070713_101684763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	615	Open in IMG/M
3300005467\|Ga0070706_100741898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	910	Open in IMG/M
3300005537\|Ga0070730_10284856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1085	Open in IMG/M
3300005541\|Ga0070733_10590445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	744	Open in IMG/M
3300005542\|Ga0070732_10154062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1368	Open in IMG/M
3300005577\|Ga0068857_100998007	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300005578\|Ga0068854_101961510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300005602\|Ga0070762_11304162	Not Available	504	Open in IMG/M
3300005610\|Ga0070763_10213681	Not Available	1033	Open in IMG/M
3300005614\|Ga0068856_100109751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2755	Open in IMG/M
3300005764\|Ga0066903_107076968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	581	Open in IMG/M
3300005843\|Ga0068860_100090951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2907	Open in IMG/M
3300005952\|Ga0080026_10065127	Not Available	975	Open in IMG/M
3300006028\|Ga0070717_10789946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	863	Open in IMG/M
3300006175\|Ga0070712_100637705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	904	Open in IMG/M
3300006175\|Ga0070712_101492892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	590	Open in IMG/M
3300006605\|Ga0074057_10024341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2001	Open in IMG/M
3300006755\|Ga0079222_10422850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	939	Open in IMG/M
3300006804\|Ga0079221_10246081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1013	Open in IMG/M
3300006854\|Ga0075425_100764093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1108	Open in IMG/M
3300009092\|Ga0105250_10260776	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300009177\|Ga0105248_13394168	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300009520\|Ga0116214_1321189	Not Available	596	Open in IMG/M
3300009523\|Ga0116221_1247979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	770	Open in IMG/M
3300009545\|Ga0105237_11977813	Not Available	591	Open in IMG/M
3300009551\|Ga0105238_12429869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	560	Open in IMG/M
3300009665\|Ga0116135_1306112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300009672\|Ga0116215_1159211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1001	Open in IMG/M
3300009700\|Ga0116217_10538105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	731	Open in IMG/M
3300009839\|Ga0116223_10225674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1137	Open in IMG/M
3300010043\|Ga0126380_10244575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1237	Open in IMG/M
3300010360\|Ga0126372_12040514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	621	Open in IMG/M
3300010371\|Ga0134125_10988559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	923	Open in IMG/M
3300010371\|Ga0134125_12191724	All Organisms → cellular organisms → Bacteria → Terrabacteria group	601	Open in IMG/M
3300010373\|Ga0134128_11718310	Not Available	690	Open in IMG/M
3300010396\|Ga0134126_10537602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1343	Open in IMG/M
3300010880\|Ga0126350_10575672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1236	Open in IMG/M
3300011271\|Ga0137393_11757671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	508	Open in IMG/M
3300012207\|Ga0137381_10358829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1271	Open in IMG/M
3300012209\|Ga0137379_10037554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	4672	Open in IMG/M
3300012360\|Ga0137375_11436183	All Organisms → cellular organisms → Bacteria → Terrabacteria group	511	Open in IMG/M
3300012478\|Ga0157328_1029693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300012924\|Ga0137413_11778831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	508	Open in IMG/M
3300012957\|Ga0164303_10612165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	719	Open in IMG/M
3300012971\|Ga0126369_11846241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	693	Open in IMG/M
3300013102\|Ga0157371_10466388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	930	Open in IMG/M
3300013105\|Ga0157369_10128554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2685	Open in IMG/M
3300013307\|Ga0157372_11389855	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300015372\|Ga0132256_103362473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538	Open in IMG/M
3300016357\|Ga0182032_11694049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300017970\|Ga0187783_11141508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300017975\|Ga0187782_10932807	Not Available	674	Open in IMG/M
3300018007\|Ga0187805_10276195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	771	Open in IMG/M
3300018007\|Ga0187805_10599098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300018058\|Ga0187766_10217243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1212	Open in IMG/M
3300018062\|Ga0187784_10066177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2931	Open in IMG/M
3300018062\|Ga0187784_10489949	Not Available	991	Open in IMG/M
3300018062\|Ga0187784_11066832	Not Available	641	Open in IMG/M
3300018433\|Ga0066667_10587811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	927	Open in IMG/M
3300021088\|Ga0210404_10075877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1644	Open in IMG/M
3300021088\|Ga0210404_10215717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1033	Open in IMG/M
3300021402\|Ga0210385_10355723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium agri	1094	Open in IMG/M
3300021403\|Ga0210397_11274640	All Organisms → cellular organisms → Bacteria → Terrabacteria group	571	Open in IMG/M
3300021404\|Ga0210389_10135911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1903	Open in IMG/M
3300021420\|Ga0210394_10175616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1865	Open in IMG/M
3300021432\|Ga0210384_10593103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Beutenbergiaceae → Beutenbergia → Beutenbergia cavernae	995	Open in IMG/M
3300021475\|Ga0210392_11485100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	507	Open in IMG/M
3300021477\|Ga0210398_10930968	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300021560\|Ga0126371_12729454	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300022467\|Ga0224712_10250881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Beutenbergiaceae → Beutenbergia → Beutenbergia cavernae	817	Open in IMG/M
3300024055\|Ga0247794_10167890	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300024181\|Ga0247693_1005374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces anthocyanicus group → Streptomyces tricolor	1541	Open in IMG/M
3300024286\|Ga0247687_1041226	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300024288\|Ga0179589_10047791	Not Available	1596	Open in IMG/M
3300024325\|Ga0247678_1053663	All Organisms → cellular organisms → Bacteria → Terrabacteria group	654	Open in IMG/M
3300025898\|Ga0207692_10100039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1589	Open in IMG/M
3300025898\|Ga0207692_10136162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1392	Open in IMG/M
3300025906\|Ga0207699_10435742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	938	Open in IMG/M
3300025915\|Ga0207693_10433014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1028	Open in IMG/M
3300025921\|Ga0207652_10606702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	981	Open in IMG/M
3300025924\|Ga0207694_10267535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1401	Open in IMG/M
3300025928\|Ga0207700_10233044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1566	Open in IMG/M
3300025929\|Ga0207664_10208175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1691	Open in IMG/M
3300025929\|Ga0207664_10880613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	804	Open in IMG/M
3300025929\|Ga0207664_10954009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	769	Open in IMG/M
3300026035\|Ga0207703_11459925	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300026078\|Ga0207702_12024284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	566	Open in IMG/M
3300026118\|Ga0207675_101852002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	622	Open in IMG/M
3300027662\|Ga0208565_1059212	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300027725\|Ga0209178_1011229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2801	Open in IMG/M
3300027738\|Ga0208989_10271384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	548	Open in IMG/M
3300027775\|Ga0209177_10064643	Not Available	1076	Open in IMG/M
3300027869\|Ga0209579_10056155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2090	Open in IMG/M
3300027905\|Ga0209415_10216462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1780	Open in IMG/M
3300027905\|Ga0209415_10376760	Not Available	1162	Open in IMG/M
3300027905\|Ga0209415_10503088	Not Available	932	Open in IMG/M
3300027905\|Ga0209415_10791416	Not Available	662	Open in IMG/M
3300030007\|Ga0311338_10491430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1290	Open in IMG/M
3300031236\|Ga0302324_101462677	Not Available	890	Open in IMG/M
3300031543\|Ga0318516_10844002	Not Available	517	Open in IMG/M
3300031546\|Ga0318538_10831950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	501	Open in IMG/M
3300031708\|Ga0310686_100423945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12490	Open in IMG/M
3300031708\|Ga0310686_117922389	Not Available	672	Open in IMG/M
3300031713\|Ga0318496_10693954	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300031715\|Ga0307476_10392134	Not Available	1025	Open in IMG/M
3300031740\|Ga0307468_101988383	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300031753\|Ga0307477_10216683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1330	Open in IMG/M
3300031769\|Ga0318526_10370902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	585	Open in IMG/M
3300031778\|Ga0318498_10159402	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300031782\|Ga0318552_10562104	Not Available	582	Open in IMG/M
3300031823\|Ga0307478_11312467	Not Available	601	Open in IMG/M
3300031860\|Ga0318495_10545359	Not Available	504	Open in IMG/M
3300031897\|Ga0318520_10780042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	599	Open in IMG/M
3300032067\|Ga0318524_10188760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1051	Open in IMG/M
3300032074\|Ga0308173_11112673	All Organisms → cellular organisms → Bacteria → Terrabacteria group	736	Open in IMG/M
3300032783\|Ga0335079_10077863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3769	Open in IMG/M
3300032892\|Ga0335081_11306100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	818	Open in IMG/M
3300032893\|Ga0335069_12210648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia miyunensis	575	Open in IMG/M
3300033475\|Ga0310811_10098546	All Organisms → cellular organisms → Bacteria	3792	Open in IMG/M
3300033547\|Ga0316212_1005963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1768	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.85%
Host-Associated	Host-Associated	16.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.54%
Plants	Host-Associated → Plants	16.15%
Aquatic	Environmental → Aquatic	2.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.69%
Freshwater	Environmental → Aquatic → Freshwater	2.31%
Peat	Environmental → Terrestrial → Peat	1.54%
Roots	Host-Associated → Plants → Roots	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.62%
Loam	Environmental → Terrestrial → Soil → Loam	17.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.31%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.54%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.54%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.77%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.77%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.15%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.23%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.46%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.62%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.08%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.08%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.08%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.08%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.08%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.31%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.54%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.54%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.54%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.77%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.77%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.77%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.77%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.77%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001452	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012478	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300024286	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024325	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033547	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1	Host-Associated	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062959

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101646182	3300000567	Peatlands Soil	ALPAPFHSADKVLGYGAGLAALWYVGALFWRLRKGTAGVKPVDELIDR*
JGI20203J14952_10406222	3300001452	Arctic Peat Soil	LIMVVLSFPAPFHGSDKMLGYALALAALWYFGGLLRRLRKGTAGVKPVSDLVDKP*
JGI12627J18819_102846781	3300001867	Forest Soil	LSFPAPFHGSDKMLGYALALAALWYFSCLLWRLRKGTAGVKPVSDLVDRL*
Ga0068869_1004222301	3300005334	Miscanthus Rhizosphere	VLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG*
Ga0070680_1002349504	3300005336	Corn Rhizosphere	SDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG*
Ga0068868_1000553275	3300005338	Miscanthus Rhizosphere	LSLPAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG*
Ga0008090_146167821	3300005363	Tropical Rainforest Soil	PAPFHGSDKVLGYGLALAALWYFGGLLWRLRKGTAGVKPVEDLAEPPSD*
Ga0070709_108006181	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	DKVLGYGLVLAALWYFGGLLWRLKKGTAGVKPIEDLASMSRHES*
Ga0070709_111884001	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GYGLVLAALWYFGGLLWRLKKGTAGVKPVEELASTPPSEP*
Ga0070714_1006662121	3300005435	Agricultural Soil	VLSLPAPFHGSDKVLGYGLVLAALWYFGGLLWRLKKGTAGVKPVEELVSTPPSEP*
Ga0070713_1016847632	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	PFHGSDKVLGYGLVLAALWYFGGLLWRLKKGTAGVKPVEELADQSQP*
Ga0070706_1007418981	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG*
Ga0070730_102848561	3300005537	Surface Soil	VLGYGAALAALWYFGGLLRRLRKGTAGVRPVEELTGRPEP*
Ga0070733_105904452	3300005541	Surface Soil	YGLALAALWYFGGLLWRLRKGTAGVKPVEDLVDADG*
Ga0070732_101540621	3300005542	Surface Soil	GYGLALAALWYFGGLLWRLRKGTAGVKPVEDLVDADG*
Ga0068857_1009980072	3300005577	Corn Rhizosphere	PFHGSDKMLGYALALAALWYFSGLLWRLRKGTAGVKPVSDLVDRR*
Ga0068854_1019615102	3300005578	Corn Rhizosphere	LAALWYFGGLLWRLKKGTAGVKPVEDLAQDPPRAG*
Ga0070762_113041621	3300005602	Soil	LAALWYFGGLMWRLRKGTAGVKPVDDLVDTQPTIR*
Ga0070763_102136812	3300005610	Soil	FHGSDKMLGYALALAALWYFSVLLWRLRKGTAGVKPISDLGDRS*
Ga0068856_1001097514	3300005614	Corn Rhizosphere	DKVLGYGLVLAALWYFGGLLWRLKKGTAGVKPVEELAGAPSPDR*
Ga0066903_1070769682	3300005764	Tropical Forest Soil	PFHGADKVLGYGLALAAAWYFGGLLWRLRKGTAGVKPVEDLVDAPPPAG*
Ga0068860_1000909511	3300005843	Switchgrass Rhizosphere	PAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG*
Ga0080026_100651272	3300005952	Permafrost Soil	DKVLLYGFILAVLWYAGALYRRLKAGTAGVKPIDDFID*
Ga0070717_107899462	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LALAALWYFGGLLWRLKKGTAGVKPVEDLVQGPPQAG*
Ga0070712_1006377052	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LPAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGIKPVEDLVQGPPQAG*
Ga0070712_1014928922	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	KVLGYGLVLAALWYFGGLLWRLKKGTAGVKPVEELVSTPPSEP*
Ga0074057_100243411	3300006605	Soil	LPAPFHGADKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLIQGPPQAG*
Ga0079222_104228503	3300006755	Agricultural Soil	SDKVLGYGLVLAALWYFGGLLWRLKKGTAGVKPVEELASAPPPEP*
Ga0079221_102460814	3300006804	Agricultural Soil	SLPAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG*
Ga0075425_1007640932	3300006854	Populus Rhizosphere	GLVLAALWYFGGLLWRLKKGTAGVKPVEELASTPPSEP*
Ga0105250_102607762	3300009092	Switchgrass Rhizosphere	FHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVDGGH*
Ga0105248_133941682	3300009177	Switchgrass Rhizosphere	SDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGPPQAG*
Ga0116214_13211892	3300009520	Peatlands Soil	FHGADKVLGYGLALAALWYFGGLVWRLKKGTAGVKPIEDLVAPPPDR*
Ga0116221_12479792	3300009523	Peatlands Soil	SLPAPFHGADKVLGYGLALAALWYFGGLVWRLKKGTAGVKPIEDLIAPPDR*
Ga0105237_119778132	3300009545	Corn Rhizosphere	VPAAFHGSDKFLLYGFIVAVAWYFGAVFWRLRNGTAGVKPVEELAE*
Ga0105238_124298692	3300009551	Corn Rhizosphere	VSAAFHGSDKFLLYGFIVAVAWYFGAVFWRLRNGTAGVKPVEELAE*
Ga0116135_13061122	3300009665	Peatland	GYGVVLAALWYFGGLLWRLKKGTAGVKPVEELTGRSE*
Ga0116215_11592111	3300009672	Peatlands Soil	LAALWYFGGLVWRLRKGTAGVKPVEDLVAAPSTRQP*
Ga0116217_105381052	3300009700	Peatlands Soil	VLSLPAPFHGADKVLGYGLALAALWYFGGLVWRLRKGTAGVKPVEDLVAAPSTRQP*
Ga0116223_102256742	3300009839	Peatlands Soil	PAPFHSADKVLGYGAGLAALWYVGALVWRLRKGTAGVKPVDELIDR*
Ga0126380_102445752	3300010043	Tropical Forest Soil	LSLPAPFHGSDKVLGYGLVLAALWYFGGLLWRLKKGTAGVKPVEDLADPPSPDR*
Ga0126372_120405142	3300010360	Tropical Forest Soil	APFHGSDKVLGYGIGLAALWYFGALLWRLRRGTAGVKPVDELVD*
Ga0134125_109885593	3300010371	Terrestrial Soil	STFHGSDKVLLYGAGVAALWYFAALLWRLRSGTAGVKPVEDLLD*
Ga0134125_121917241	3300010371	Terrestrial Soil	LPAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGPPQAG*
Ga0134128_117183101	3300010373	Terrestrial Soil	GSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLAQDPPRAG*
Ga0134126_105376021	3300010396	Terrestrial Soil	LGYGLVLAALWYFGGLLWRLKKGTAGVKPVEDLARASQQES*
Ga0126350_105756721	3300010880	Boreal Forest Soil	SPFHGSDKMLGYALALAALWYFGGLLRRLRKGTAGVKPVSDLVGKP*
Ga0137393_117576712	3300011271	Vadose Zone Soil	FPAPFHGSDKMLGYALALAALWYFSVLLWRLRKGTAGVKPLSDLVDRP*
Ga0137381_103588291	3300012207	Vadose Zone Soil	VLSLPAPFHGSDKVLGYGLALAALWYFGGLLRRLKKGTAGVKPVENLVQGPPKAG*
Ga0137379_100375546	3300012209	Vadose Zone Soil	ADKVLGYGLALAALWYFGGLLRRLRNGTAGVKPVEDLVDAPPAREP*
Ga0137375_114361832	3300012360	Vadose Zone Soil	VLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGPPQAG*
Ga0157328_10296932	3300012478	Arabidopsis Rhizosphere	MLVLSLPAPFHGSDRVLGYGLALAALWYFGALLWRLKKGTAGVKPVEDLVDRQH*
Ga0137413_117788311	3300012924	Vadose Zone Soil	APFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGIKPVEDLVQGPPQAG*
Ga0164303_106121651	3300012957	Soil	LVLSLPAPFHGSDKVLGYGLVLSALWYFGGLLWRLKKGTAGVKPVEDLAQDPPRAG*
Ga0126369_118462411	3300012971	Tropical Forest Soil	GSDKVLGYGLVVAALWYFGGLLWRLKKGTAGVKPVEELAERSE*
Ga0157371_104663882	3300013102	Corn Rhizosphere	FHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVDGRH*
Ga0157369_101285543	3300013105	Corn Rhizosphere	VSATFHGSDKFLLYGFIVAVAWYFGAVFWRLRNGTAGVKPVEELAE*
Ga0157372_113898552	3300013307	Corn Rhizosphere	APFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVDGGH*
Ga0132256_1033624732	3300015372	Arabidopsis Rhizosphere	PAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLAGPSPD*
Ga0182032_116940492	3300016357	Soil	SLPTPFHGADKVLGYGLALAAAWYFGGLLWRLRKGTAGVKPVEDLIDAPPPVG
Ga0187783_111415082	3300017970	Tropical Peatland	GADKVLGYGLALAALWYFGGLLWRLRKGTAGVKPVESLVDTDQ
Ga0187782_109328072	3300017975	Tropical Peatland	VVLSFPAPFHGADKVLGYGLALAALWYFGGLLWRLRKGTAGVKPVEALVDQDG
Ga0187805_102761952	3300018007	Freshwater Sediment	PAPFHGADKVLGYGAILAALWYFGGLIWRLRRGTAGVRPVDELVE
Ga0187805_105990982	3300018007	Freshwater Sediment	LVLSLPAPFHGADKVLGYGLALAALWYFGGLLWRLRKGTAGVKPVEDLIDANG
Ga0187766_102172433	3300018058	Tropical Peatland	LSLPAPFHGADKVMGYVLAVAAAWYFGGLLWRLKKGTAGVKPVEDLVDRPTP
Ga0187784_100661774	3300018062	Tropical Peatland	GYGLALAALWYFGGLLWRLRKGTAGVKPVEDLIDTNG
Ga0187784_104899492	3300018062	Tropical Peatland	GYGLALAALWYFGGLLWRLRKGTAGVKPVEDLVDQDG
Ga0187784_110668322	3300018062	Tropical Peatland	SFPAPFHGADKVLGYGLALAALWYFGGLLWRLRKGTAGVKPVEALVDQDG
Ga0066667_105878111	3300018433	Grasslands Soil	APFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVDRNH
Ga0210404_100758771	3300021088	Soil	LSLPAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGIKPVEDLVQGPPQAG
Ga0210404_102157174	3300021088	Soil	LPAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGPPQAG
Ga0210385_103557233	3300021402	Soil	GYGLALAALWYFGGLLRRLKNGTAGVKPLSDLADEP
Ga0210397_112746401	3300021403	Soil	KVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGPPQAG
Ga0210389_101359111	3300021404	Soil	LGYGLVLAALWYFGGLLWRLKKGTAGIKPVEDLVQDPPQAG
Ga0210394_101756161	3300021420	Soil	YGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGPPQAG
Ga0210384_105931031	3300021432	Soil	LSLPAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGPPQAG
Ga0210392_114851002	3300021475	Soil	PSPFHGSDKMLGYALALAALWYFGGLLRRLRKGTAGVKPVSDLVGKP
Ga0210398_109309682	3300021477	Soil	FPAPFHGSDKMLGYALALAALWYFGGLLRRLRKGTAGVKPVGDLVDKP
Ga0126371_127294542	3300021560	Tropical Forest Soil	FHGADKVIGYGAGLAAIWYFAALLWRLRNGTAGVKPVDELIE
Ga0224712_102508813	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	LVLSLPAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG
Ga0247794_101678901	3300024055	Soil	LALAALWYFGGLLRRLRKGTAGVKPVEDLVQGPPQAG
Ga0247693_10053741	3300024181	Soil	LVLSLPAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVDGGH
Ga0247687_10412262	3300024286	Soil	GSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVDGGH
Ga0179589_100477912	3300024288	Vadose Zone Soil	FHGSDRMLGYALALAALWYFGGLLRRLRKGTAGVKPVSDLIDRP
Ga0247678_10536631	3300024325	Soil	KVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG
Ga0207692_101000393	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PAPFHGSDKVLGYGLVLAALWYFGGLLWRLKKGTAGVKPVEELAGAPSPDR
Ga0207692_101361624	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG
Ga0207699_104357422	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLAQDPPRAG
Ga0207693_104330144	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	SDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG
Ga0207652_106067021	3300025921	Corn Rhizosphere	LALAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG
Ga0207694_102675354	3300025924	Corn Rhizosphere	SLPAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGRPPSG
Ga0207700_102330443	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VLGYGLVLAALWYFGGLLWRLKKGTAGVKPVEELAGAPSPDR
Ga0207664_102081753	3300025929	Agricultural Soil	LSLPAPFHGSDKVLGYGLVLAALWYFGGLLWRLKKGTAGVKPVEELAGAPSPDR
Ga0207664_108806132	3300025929	Agricultural Soil	MLVLSLPAPFHGSDKVLGYGLVLAALWYFGGLLWRLKKGTAGIKPVEDLVQGPPQAG
Ga0207664_109540092	3300025929	Agricultural Soil	DKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQGPPQAG
Ga0207703_114599252	3300026035	Switchgrass Rhizosphere	IMVVLSFPAPFHGSDKMLGYALALAALWYFSGLLWRLRKGTAGVKPVSDLVDRR
Ga0207702_120242842	3300026078	Corn Rhizosphere	PAPFHGSDKVLGYGLVLAALWYFGGLLWRLKKGTAGVKPVEDLARASQPES
Ga0207675_1018520021	3300026118	Switchgrass Rhizosphere	LAALWYFGGLLWRLKKGTAGVKPVEDLVQGPPPAG
Ga0208565_10592122	3300027662	Peatlands Soil	DKVLGYGLALAALWYFGGLVWRLKKGTAGVKPIEDLVAPPPDR
Ga0209178_10112291	3300027725	Agricultural Soil	GSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLLQGRPPSG
Ga0208989_102713841	3300027738	Forest Soil	LSFPAPFHGSDKMLGYALALAALWYFSVLLWRLRKGTAGVKPLSDLVDRP
Ga0209177_100646431	3300027775	Agricultural Soil	VPAAFHGSDKFLLYGFIVAVAWYFGAVFWRLRNGTAGVKPVEELAE
Ga0209579_100561554	3300027869	Surface Soil	SFPAPFHGADKVLGYGLALAALWYFGGLLWRLRKGTAGVKPVEDLLDANG
Ga0209415_102164623	3300027905	Peatlands Soil	GADKVLGYGLALAALWYFGGLVWRLRKGTAGVKPVEDLVAAPSTRQP
Ga0209415_103767601	3300027905	Peatlands Soil	MVVLSFPSPFHGADKVLGYGLALAALWYFGGLLWRLRAGTAGVKPVEDLVDADG
Ga0209415_105030881	3300027905	Peatlands Soil	MVVLSFPSPFHGADKVLGYGLALAALWYFGGLLWRLRKGTAGVKPVEDLLDADV
Ga0209415_107914161	3300027905	Peatlands Soil	GADKVLGYGLALAALWYFGGLVWRLKNGTAGVKPVEDLIAPPPARQP
Ga0311338_104914303	3300030007	Palsa	GSDKMLGYALALAALWYFGGLLRRLRKGTAGVKPVVDLVDKP
Ga0302324_1014626771	3300031236	Palsa	DKMLGYALVLAALWYFGGLLRRLKNGTAGVKPVSDLADKP
Ga0318516_108440022	3300031543	Soil	YGLAVAAAWYFGGLLWRLRKGTAGVKPVEDLIDAPPPAG
Ga0318538_108319501	3300031546	Soil	VLGYGLVLAALWYFGGLIWRLKKGTAGVKPVEDLLGPPSP
Ga0310686_1004239459	3300031708	Soil	DKMLGYALALAALWYFGGLLRRLRNGTAGVKPVTDLADKP
Ga0310686_1179223891	3300031708	Soil	ADKVLGYGLVLAALWYFGGLLWRLRRGEAGVKPLDDLTD
Ga0318496_106939542	3300031713	Soil	GSDKVLGYGLALAALWYFGGLLWRLRKGTAGVKPVEDLAEPPSSD
Ga0307476_103921341	3300031715	Hardwood Forest Soil	DKVLGYGLALAALWYFGGLLWRLRKGTAGVKPVEDLLDANG
Ga0307468_1019883831	3300031740	Hardwood Forest Soil	GYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVDGGR
Ga0307477_102166831	3300031753	Hardwood Forest Soil	VLSLPAPFHGADKVLGYGLALAAAWYFGGLLWRLRKGTAGVKPVEDLVDAPPPVG
Ga0318526_103709022	3300031769	Soil	MLILSLPTPFHGADKVLGYGLAVAAAWYFGGLLWRLRKGTAGVKPVEDLIDAPPPVG
Ga0318498_101594022	3300031778	Soil	LALAALWYFGGLLWRLRKGTAGVKPVEDLAGPPSSD
Ga0318552_105621042	3300031782	Soil	VLGYGLAVAAAWYFGGLLWRLRKGTAGVKPVEDLIDAPPPAG
Ga0307478_113124671	3300031823	Hardwood Forest Soil	VLGYGLAVAAAWYFGGLLWRLRKGTAGVRPVEDLLDASRR
Ga0318495_105453592	3300031860	Soil	LIMIVLSFPAPFHGADKVLGYGLGLAALWYFGGLLWRLRNGTAGVKPVEDLLDKDG
Ga0318520_107800422	3300031897	Soil	KVLGYGLAVAAAWYFGGLLWRLRKGTAGVKPVEDLIDAPPPVG
Ga0318524_101887603	3300032067	Soil	TGDDLALAPTPFHGADKVLGYGLAVAAAWYFGGLLWRLKKGTAGVKPVEDLVDRPRP
Ga0308173_111126731	3300032074	Soil	VLSLPAPFHGSDKVLGYGLALAALWYFGGLLWRLKKGTAGVKPVEDLVQPPPEAV
Ga0335079_100778635	3300032783	Soil	APFHGSDKVLGYGLVLAALWYFGGLLWRLRKGTAGVKPVEDLASPPPAG
Ga0335081_113061002	3300032892	Soil	PFHGSDKVLGYGLVLAALWYFGGLLWRLRKGTAGVKPVEDLAEPPPSD
Ga0335069_122106481	3300032893	Soil	SDRVLGYGLALAALWYFGGLLWRLKKGTAGVKPISDLVDRP
Ga0310811_100985461	3300033475	Soil	MLGYALALAALWYFGALLWRLRKGTAGVKPVSELVDRP
Ga0316212_10059632	3300033547	Roots	LIMVVLSFPAPFHGSDRMLGYALALAALWYFSVLLWRLRKGTAGVKPVSDLVDRP

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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