Metagenome / Metatranscriptome Family F062342

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062342
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	66 residues
Representative Sequence	VSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Number of Associated Samples	72
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.69 %
% of genes near scaffold ends (potentially truncated)	41.54 %
% of genes from short scaffolds (< 2000 bps)	87.69 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.154 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.615 % of family members)
Environment Ontology (ENVO)	Unclassified (53.077 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.615 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.83% β-sheet: 14.13% Coil/Unstructured: 63.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF00589	Phage_integrase	23.85
PF13356	Arm-DNA-bind_3	3.08
PF02371	Transposase_20	1.54
PF12728	HTH_17	1.54
PF03480	DctP	1.54
PF13481	AAA_25	0.77
PF00239	Resolvase	0.77
PF12307	DUF3631	0.77
PF09250	Prim-Pol	0.77
PF06240	COXG	0.77
PF00476	DNA_pol_A	0.77
PF02743	dCache_1	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.54
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	0.77
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.77
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.77
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.77
COG3427	Carbon monoxide dehydrogenase subunit CoxG	Energy production and conversion [C]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.15 %
Unclassified	root	N/A	33.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.15 %
Unclassified	root	N/A	33.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.15 %
Unclassified	root	N/A	33.85 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.77 %
Unclassified	root	N/A	33.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.69 %
Unclassified	root	N/A	33.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.38 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.08 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.85 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.31 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.54 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.54 %
Acidocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella	0.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.54 %
unclassified Acidocella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → unclassified Acidocella	0.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.85 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.54 %
Acidocella sp. C78	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → unclassified Acidocella → Acidocella sp. C78	0.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10026471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2370	Open in IMG/M
3300004633\|Ga0066395_10323507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	850	Open in IMG/M
3300004633\|Ga0066395_10821976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300005332\|Ga0066388_100532825	Not Available	1806	Open in IMG/M
3300005332\|Ga0066388_100652186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1667	Open in IMG/M
3300005332\|Ga0066388_101339509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1238	Open in IMG/M
3300005332\|Ga0066388_101865151	Not Available	1072	Open in IMG/M
3300005332\|Ga0066388_101938863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1053	Open in IMG/M
3300005332\|Ga0066388_101948500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1051	Open in IMG/M
3300005332\|Ga0066388_102090733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1018	Open in IMG/M
3300005332\|Ga0066388_102284469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	978	Open in IMG/M
3300005332\|Ga0066388_102312051	Not Available	973	Open in IMG/M
3300005332\|Ga0066388_104491296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	711	Open in IMG/M
3300005363\|Ga0008090_15543364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1188	Open in IMG/M
3300005363\|Ga0008090_15544366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	536	Open in IMG/M
3300005363\|Ga0008090_15620738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300005713\|Ga0066905_100112475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1879	Open in IMG/M
3300005713\|Ga0066905_100185510	Not Available	1539	Open in IMG/M
3300005713\|Ga0066905_100490926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1019	Open in IMG/M
3300005764\|Ga0066903_100028613	All Organisms → cellular organisms → Bacteria	6224	Open in IMG/M
3300005764\|Ga0066903_100282630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2603	Open in IMG/M
3300005764\|Ga0066903_100391002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2281	Open in IMG/M
3300005764\|Ga0066903_100594430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1915	Open in IMG/M
3300005764\|Ga0066903_101365972	All Organisms → cellular organisms → Bacteria → Proteobacteria	1328	Open in IMG/M
3300005764\|Ga0066903_101600090	Not Available	1235	Open in IMG/M
3300005764\|Ga0066903_101806742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1168	Open in IMG/M
3300005764\|Ga0066903_102204377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1062	Open in IMG/M
3300005764\|Ga0066903_102803975	Not Available	945	Open in IMG/M
3300005764\|Ga0066903_104008995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	789	Open in IMG/M
3300005764\|Ga0066903_107073866	Not Available	581	Open in IMG/M
3300005764\|Ga0066903_108466652	Not Available	525	Open in IMG/M
3300010046\|Ga0126384_11661214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	603	Open in IMG/M
3300010047\|Ga0126382_10079335	Not Available	2046	Open in IMG/M
3300010047\|Ga0126382_10295142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1214	Open in IMG/M
3300010358\|Ga0126370_10182938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1565	Open in IMG/M
3300010358\|Ga0126370_12534235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	512	Open in IMG/M
3300010359\|Ga0126376_10300657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1395	Open in IMG/M
3300010361\|Ga0126378_10992094	Not Available	944	Open in IMG/M
3300010362\|Ga0126377_12235764	Not Available	623	Open in IMG/M
3300010366\|Ga0126379_10410405	Not Available	1404	Open in IMG/M
3300010366\|Ga0126379_11783082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	720	Open in IMG/M
3300010366\|Ga0126379_11896607	Not Available	699	Open in IMG/M
3300010366\|Ga0126379_13227958	Not Available	546	Open in IMG/M
3300010366\|Ga0126379_13489280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300010376\|Ga0126381_100329309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2103	Open in IMG/M
3300010398\|Ga0126383_10276540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1663	Open in IMG/M
3300010398\|Ga0126383_11118440	Not Available	877	Open in IMG/M
3300010398\|Ga0126383_11506236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	762	Open in IMG/M
3300010398\|Ga0126383_11549419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	752	Open in IMG/M
3300012971\|Ga0126369_10337121	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300012971\|Ga0126369_10360145	All Organisms → cellular organisms → Bacteria → Proteobacteria	1480	Open in IMG/M
3300016270\|Ga0182036_10082373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2134	Open in IMG/M
3300016294\|Ga0182041_10253425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1434	Open in IMG/M
3300016319\|Ga0182033_10275459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1378	Open in IMG/M
3300016341\|Ga0182035_10206047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1559	Open in IMG/M
3300016341\|Ga0182035_11291243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	653	Open in IMG/M
3300016357\|Ga0182032_10104597	All Organisms → cellular organisms → Bacteria → Proteobacteria	2006	Open in IMG/M
3300016357\|Ga0182032_10702163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	849	Open in IMG/M
3300016357\|Ga0182032_11594850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300016387\|Ga0182040_10114388	All Organisms → cellular organisms → Bacteria → Proteobacteria	1859	Open in IMG/M
3300016422\|Ga0182039_10158134	Not Available	1764	Open in IMG/M
3300016445\|Ga0182038_10266409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1385	Open in IMG/M
3300021560\|Ga0126371_10146727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2416	Open in IMG/M
3300021560\|Ga0126371_10377655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1556	Open in IMG/M
3300021560\|Ga0126371_10603297	Not Available	1247	Open in IMG/M
3300021560\|Ga0126371_12416625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	636	Open in IMG/M
3300024347\|Ga0179591_1019596	All Organisms → cellular organisms → Bacteria	4476	Open in IMG/M
3300027874\|Ga0209465_10292540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	816	Open in IMG/M
3300027874\|Ga0209465_10511703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	599	Open in IMG/M
3300031543\|Ga0318516_10385698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	808	Open in IMG/M
3300031545\|Ga0318541_10043139	All Organisms → cellular organisms → Bacteria	2291	Open in IMG/M
3300031545\|Ga0318541_10421595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300031545\|Ga0318541_10707917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	562	Open in IMG/M
3300031545\|Ga0318541_10788163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300031546\|Ga0318538_10820135	Not Available	505	Open in IMG/M
3300031561\|Ga0318528_10091951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1584	Open in IMG/M
3300031561\|Ga0318528_10162470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1191	Open in IMG/M
3300031564\|Ga0318573_10508405	Not Available	649	Open in IMG/M
3300031573\|Ga0310915_10151896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1601	Open in IMG/M
3300031573\|Ga0310915_10338717	Not Available	1065	Open in IMG/M
3300031679\|Ga0318561_10490219	Not Available	676	Open in IMG/M
3300031679\|Ga0318561_10658865	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300031681\|Ga0318572_10218994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1115	Open in IMG/M
3300031719\|Ga0306917_10433569	Not Available	1028	Open in IMG/M
3300031719\|Ga0306917_10486782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	968	Open in IMG/M
3300031724\|Ga0318500_10503290	Not Available	609	Open in IMG/M
3300031744\|Ga0306918_10348679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1148	Open in IMG/M
3300031744\|Ga0306918_10446648	Not Available	1010	Open in IMG/M
3300031763\|Ga0318537_10062885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1356	Open in IMG/M
3300031764\|Ga0318535_10043189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1858	Open in IMG/M
3300031770\|Ga0318521_10858685	Not Available	554	Open in IMG/M
3300031792\|Ga0318529_10590976	Not Available	515	Open in IMG/M
3300031797\|Ga0318550_10100754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1362	Open in IMG/M
3300031805\|Ga0318497_10163943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1221	Open in IMG/M
3300031819\|Ga0318568_10964657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300031845\|Ga0318511_10531051	Not Available	546	Open in IMG/M
3300031879\|Ga0306919_11284820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300031879\|Ga0306919_11365779	Not Available	535	Open in IMG/M
3300031880\|Ga0318544_10392217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300031890\|Ga0306925_10049064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4396	Open in IMG/M
3300031893\|Ga0318536_10422320	Not Available	673	Open in IMG/M
3300031896\|Ga0318551_10839248	Not Available	535	Open in IMG/M
3300031897\|Ga0318520_10755168	Not Available	609	Open in IMG/M
3300031910\|Ga0306923_11272549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	782	Open in IMG/M
3300031912\|Ga0306921_11518018	Not Available	731	Open in IMG/M
3300031941\|Ga0310912_10687376	Not Available	794	Open in IMG/M
3300031942\|Ga0310916_10074443	All Organisms → cellular organisms → Bacteria	2667	Open in IMG/M
3300031942\|Ga0310916_10210334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1630	Open in IMG/M
3300031947\|Ga0310909_10321816	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300031947\|Ga0310909_10854193	Not Available	749	Open in IMG/M
3300031954\|Ga0306926_10506010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1484	Open in IMG/M
3300031981\|Ga0318531_10582986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300032001\|Ga0306922_11296424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	737	Open in IMG/M
3300032025\|Ga0318507_10187665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	891	Open in IMG/M
3300032035\|Ga0310911_10640797	Not Available	616	Open in IMG/M
3300032042\|Ga0318545_10184105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300032043\|Ga0318556_10086759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1570	Open in IMG/M
3300032044\|Ga0318558_10270535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	838	Open in IMG/M
3300032060\|Ga0318505_10159147	Not Available	1049	Open in IMG/M
3300032066\|Ga0318514_10635660	Not Available	568	Open in IMG/M
3300032076\|Ga0306924_12072553	Not Available	584	Open in IMG/M
3300032089\|Ga0318525_10360153	Not Available	746	Open in IMG/M
3300032094\|Ga0318540_10112389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1288	Open in IMG/M
3300032261\|Ga0306920_101779123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	870	Open in IMG/M
3300033289\|Ga0310914_10630204	Not Available	965	Open in IMG/M
3300033289\|Ga0310914_10870121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → unclassified Acidocella → Acidocella sp. C78	800	Open in IMG/M
3300033290\|Ga0318519_10671772	Not Available	632	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.15%
Loam	Environmental → Terrestrial → Soil → Loam	23.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	23.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	3.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	23.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.46%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	3.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_100264712	3300004633	Tropical Forest Soil	MSKAPKKTVPRRRRPTLSAALKAAQKAGKPVKSATIEDGKVTLTFGDVPTESSNEWDEALSRGKH*
Ga0066395_103235072	3300004633	Tropical Forest Soil	VSELMKKSVRKRKPTLRAALEAAKKAGTPVKSAVVEDGKVSLVFGEPMADTSNEWDEALSRGKH*
Ga0066395_108219761	3300004633	Tropical Forest Soil	VSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGKH*
Ga0066388_1005328251	3300005332	Tropical Forest Soil	VSEPPKKSVRKRKPTLRAALEAAKASGKHVTSATVRDGEVVLEFGEPTPDTSDEWDRKLRELDRGKH*
Ga0066388_1006521863	3300005332	Tropical Forest Soil	LSQPPSKSVRKRKPTLRAALEAAQKAGKAVKSATVKDGEIVLEFGEPTADRGNDWDRKLEELERGKN*
Ga0066388_1013395092	3300005332	Tropical Forest Soil	VSEPPNKPMRKRRPTLRGALEAAQKAGIAVKSAVLENDRITLQFVGGGELTSDAYDDWDRKLAELERGKH*
Ga0066388_1018651511	3300005332	Tropical Forest Soil	VSEPPKKSARKRKPTLRSALEAAQKAGRSVRSATIRDGEVVLEFGEPTVDTSDEWDRKLRELDRGKH*
Ga0066388_1019388631	3300005332	Tropical Forest Soil	VSEPVKKSVRKRKPTLRAALEAAKKAGTPVKSAVVEDGKVSLVFGEPMADTSNEWDEALSRGKH*
Ga0066388_1019485001	3300005332	Tropical Forest Soil	MGEPPKKSTRRQRRPTLRDALNAAHSSGQKVKGAVVEPDGKITLTFGEPTAVDGTNENEWDRRERELARGKH*
Ga0066388_1020907332	3300005332	Tropical Forest Soil	RRGRAVSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGKH*
Ga0066388_1022844692	3300005332	Tropical Forest Soil	VSKAAKKTVRKRKPTLRAALEAAAKAGRTVKTAIVEDGRVTLTFGESSDAPASNEWDEALNRDKH*
Ga0066388_1023120512	3300005332	Tropical Forest Soil	MTKDTVQAGRRRRRPTLSAALKGARAAGEKVRAAIVEDGKITLTFGEPTADNANDDWDRKLTELERGKY*
Ga0066388_1044912961	3300005332	Tropical Forest Soil	VSEPRKKSVRKRKPTLRAALEAAKAVGEKVKGAVVEPDGKITLTFGEPTAADANEDWDRKLEELERGKH*
Ga0008090_101552302	3300005363	Tropical Rainforest Soil	MGEPPTKSARRRRRPTLRSALEAAQKTGTSVKSATYDADGKLTLTFGEPTADTSNEWDRKLEELERGKH*
Ga0008090_155433642	3300005363	Tropical Rainforest Soil	MSELVKKSVRKRKPTLRAALEAAKKAGTPVKSAVVEDGKVSLVFGEPMADTSNEWDEALSRGKH*
Ga0008090_155443661	3300005363	Tropical Rainforest Soil	MARSPSTFRQNDVTRALKAVRAAGSAGGRAVSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH*
Ga0008090_156207381	3300005363	Tropical Rainforest Soil	VRELKPVRRRRRRPTLSAALKAARKAGETVKSATIEDGKVTLVFGSGESVASTTDDWDRKLEELERGKH*
Ga0066905_1001124752	3300005713	Tropical Forest Soil	MINDRDTVPAGRRRRRPTLSAALKAARAAGEKVKSATIEDGKVTLVFGSGESVASTNNDDWDKKLEEMARGKH*
Ga0066905_1001855102	3300005713	Tropical Forest Soil	VSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH*
Ga0066905_1004909261	3300005713	Tropical Forest Soil	AMSQWRKKAVRKRKPTLRAALTAAAQAGKTVKGAVIEPDGKITLTFGDSAVDGTNDDWDKKLEELERGKH*
Ga0066903_1000286134	3300005764	Tropical Forest Soil	VSEPTRVRRRRRPTLSAALKAARAAGETVKSATIEDGKVTLVFGSGESVTSTNDDWDKKLEELERGKH*
Ga0066903_1002826302	3300005764	Tropical Forest Soil	MGEPPNKPTRRQRRPTLRDALNAARSSGQKVKGAVVEPDGKITLTFGESAVDGTNENDWDRKLEELQRGKH*
Ga0066903_1003910022	3300005764	Tropical Forest Soil	VDQGNAAVSKAPNKAVRKRKPTLRAALAAAAQAGQTVRSATIEDGKVTLVFGSGESVASTNDDWDRKLAELERGKH*
Ga0066903_1005944303	3300005764	Tropical Forest Soil	VSEPPKKSVRKRKPTLRAALEAAKAVGEKVKGAVVEPDGKITLTFGEPTAADANEDWDRKLEELERGKH*
Ga0066903_1013659724	3300005764	Tropical Forest Soil	VSELVKKSVRKRKPTLRAALAAAKKAGTPVKSAVVEDGKVSLVFGEPMADTSNEWDEALS
Ga0066903_1016000902	3300005764	Tropical Forest Soil	MSEPPKKSVRKRKPTLRAALEAAQKAGRSVKSAVVEDGKVTLTFGEPAADANDDWDRKLAELERGKH*
Ga0066903_1018067421	3300005764	Tropical Forest Soil	VGETARRRRRRPTLSAALKAARSSGQKVKGAVIEPDGKITLTFGESAVEGTNESDWDRKLEELERGKH*
Ga0066903_1022043772	3300005764	Tropical Forest Soil	MSEPPKKSVRKRRPTLRAALEAAQKAGKAVKSATIKDGEVTLVFGEPTAAESIDEWDERLNRGKH*
Ga0066903_1028039753	3300005764	Tropical Forest Soil	VSEPPNKPTRRQRRPTLRDALNAARSSGQKVKGAVVEPDGKITLTFGDSAVDGTNDSDWDRKLEELERGKH*
Ga0066903_1040089952	3300005764	Tropical Forest Soil	MPRSPATFRQTDVTRALKKTVRRRRPTLRGALEAAQKAGRPVRSATIEDGKVTLVFGEPTADTSNEWDEALDRGKR*
Ga0066903_1070738661	3300005764	Tropical Forest Soil	MSAPQKKSVRKRRPTLRAALEAAQKAGKAVKSATIKDGEVTLVFGEPTAAESIDEWDERLNRGKH*
Ga0066903_1075111841	3300005764	Tropical Forest Soil	MSAPQKKSVRKRRPTLRAALEAAQKAGKPVKSATVDPDGKITITFGEPTADATDDWDRKLEELERGKH*
Ga0066903_1084666522	3300005764	Tropical Forest Soil	MINDRDTVPAGRRRRPTLSAALKAARAAGEKVKSATIEDGKVTLVFGSGESVANTNDDWDKKLEELERGKH*
Ga0126384_116612142	3300010046	Tropical Forest Soil	VSEPPKKSVRKRRPTLRAALEAAQKAGKAVKSATIKDGEVTLVFGEPTAAESIDEWDERLNRGKH*
Ga0126382_100793355	3300010047	Tropical Forest Soil	VSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGESAADANDDWDRKLAELERGKH*
Ga0126382_102951424	3300010047	Tropical Forest Soil	MINDRDTVPAGRRRRRPTLSAALKAARAAGEKVKSATIEDGKVTLVFGSGETVASTNDDWDKKLEELERGKH
Ga0126370_101829381	3300010358	Tropical Forest Soil	VSKALQKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH*
Ga0126370_125342352	3300010358	Tropical Forest Soil	VKKSVRKRKPTLRAALEAAKKAGTPVKSAVVEDGKVSLVFGEPMADTSNEWDEALSRGKH
Ga0126376_103006573	3300010359	Tropical Forest Soil	RQTDVTRALKKTVRRRRPTLRGALEAAQKAGRPVRSATIEDGKVTLVFGEPTADTSNEWDEALDRGKR*
Ga0126378_109920941	3300010361	Tropical Forest Soil	VSKALQKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGKH*
Ga0126377_122357641	3300010362	Tropical Forest Soil	LSAALKAARAAGETVKSATIEDGKVTLVFGSGESVTSTSDDWDRKLEELEHRD
Ga0126379_104104053	3300010366	Tropical Forest Soil	RRLRRGRAVSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGGLAADANDDWDRKLAELERGKH*
Ga0126379_117830822	3300010366	Tropical Forest Soil	VSELMKKSVRKRKPTLRAALEAAKKAGTPVKSAVVEDGKDSLVFGEPMADTGNEWDEALKSWQALG*
Ga0126379_118966071	3300010366	Tropical Forest Soil	MSEPPKKSVRKRKPTLRAALEAAKAVGEKVKGAVVEPDGKITLTFGNGESVTSTNVDDWDMHLKELDRGKS*
Ga0126379_132279581	3300010366	Tropical Forest Soil	VGEPQHKRVRRPTLRDALKAAKAAGQTVKSAVVEPDGRVTLTFGSGESVTADDWDRKLEELERGKH*
Ga0126379_134892801	3300010366	Tropical Forest Soil	PTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGNH*
Ga0126381_1003293091	3300010376	Tropical Forest Soil	MSKAPKKTVPRRRRPTLSAALKAARKAGKPVKSATIEDGKVTLTFGDVPTESSNEWDEALSRGKH*
Ga0126381_1025768972	3300010376	Tropical Forest Soil	AMSEPPDKPVRRRRPGLSAALKAAQKAGRQVKSAVVEDGKVTLTFGDEPTESSNEWDERLNRCGKPS*
Ga0126383_102765401	3300010398	Tropical Forest Soil	KSVRKRRPTLRAALEAAKAVGEKVKGAVVEPDGKITLTFGEPTAADANDDWDRKLAELEHGKH*
Ga0126383_111184401	3300010398	Tropical Forest Soil	RSGGRHAVGEPQHKRVRRPTLRDALKAAKAAGQTVKSAVVEPDGRVTLTFGSGESVTADDWDRKLEELERGKH*
Ga0126383_115062361	3300010398	Tropical Forest Soil	VSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTAGTSNEWDEALNRGKY*
Ga0126383_115494192	3300010398	Tropical Forest Soil	QKKSVRKRRPTLRAALEAAQKAGKAVKSATVEDGKVTLVFGEPTAETNVDWDRKLTELERGKH*
Ga0126369_103371212	3300012971	Tropical Forest Soil	VSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGKH*
Ga0126369_103601451	3300012971	Tropical Forest Soil	RKRKPTLRAALEAAKKAGTPVKSAVVEDGKVSLVFGEPMADTSNEWDEALSRGKH*
Ga0182036_100823732	3300016270	Soil	VSKASKKTVRRPKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0182041_102534252	3300016294	Soil	VSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKATLVFGEPTADTSNEWDEALNRGKH
Ga0182033_102754593	3300016319	Soil	RRGRPVSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0182035_102060472	3300016341	Soil	MSDEPKPKRQRKPTLRAALEAAKAAGRSVKSATIENGKVTLVFGELAADTSNEWDEALNRGKH
Ga0182035_112912432	3300016341	Soil	VSELVKKSVRKRKPTLRAALEAAKKAGTPVKSAVVEDGKVSLVFGEPMADTSNEWDEALSRGKH
Ga0182032_101045971	3300016357	Soil	SKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0182032_107021633	3300016357	Soil	KKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGKH
Ga0182032_115948502	3300016357	Soil	MGEPVFVRRRRRPALSAALKAARAAGLTVKSATTTEDGITLVFDNGETVTGTGDDWDRRLRELQDGKH
Ga0182040_101143883	3300016387	Soil	ASKKTGRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGK
Ga0182039_101581343	3300016422	Soil	VSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGESAADSNDDWDRKLAELERGKH
Ga0182038_102664093	3300016445	Soil	RRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0126371_101467273	3300021560	Tropical Forest Soil	MPRSPATFRQTDVTRALKKTVRRRRPTLRGALEAAQKAGRPVRSATIEDGKVTLVFGEPTADTSNEWDEALDRGKR
Ga0126371_103776553	3300021560	Tropical Forest Soil	VSEPVKKSVRKRKPTLRAALEAAKKAGTPVKSAVVEDGKVSLVFGEPMADTSNEWDEALSRGKH
Ga0126371_106032973	3300021560	Tropical Forest Soil	VSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0126371_124166251	3300021560	Tropical Forest Soil	MSAPQKKSVRKRRPTLRAALEAAQKAGKAVKSATIKDGEVTLVFGEPTAAESIDEWDERLNRGKH
Ga0179591_10195968	3300024347	Vadose Zone Soil	VSEPPKKTVHRRRPTLSSALKAAQKAGRTVKSAVVEDGKVTIIFGDEAPTKASNEWDEALKRCDKH
Ga0209465_102925403	3300027874	Tropical Forest Soil	MKKSVRKRKPTLRAALEAAKKAGTPVKSAVVEDGKVSLVFGEPMADTSNEWDEALSRGKH
Ga0209465_105117031	3300027874	Tropical Forest Soil	RPKPPHNTIRRGRAVSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGKH
Ga0318516_103856982	3300031543	Soil	VSKASKKTGRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0318541_100431393	3300031545	Soil	VGGTARRRRRPTLSALLRAAEKAGKAVKSATIEDGKVTLVFGSGESAASSNDDWDKKLEELERGKH
Ga0318541_104215952	3300031545	Soil	MSDEPKPKRQRKPTLRAALEAAKAAGRPVKSATIEDGKVTLVFGELAADTSNEWDEALNRGKH
Ga0318541_107079172	3300031545	Soil	VSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGKH
Ga0318541_107881632	3300031545	Soil	VGKALKKTVRRRKPTLSAALKAAKAVGETVKSATIEDGKVTLVFGSGESVASTNDDWDRKLEELERGKH
Ga0318538_108201352	3300031546	Soil	PHNTIRRGRAVSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAPDTSNEWDEALNRGKH
Ga0318528_100919511	3300031561	Soil	HNTIRRGRPVSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0318528_101624703	3300031561	Soil	KAPKKTVPRRRRPTLSAALKAAQKAGKPVKSATIEDGKVTLTFGDVPTESSNEWDEALSRGKH
Ga0318573_105084051	3300031564	Soil	VSKASKKTGRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGESAAGSNDDWDRKLAELERGKH
Ga0310915_101518963	3300031573	Soil	KPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGKH
Ga0310915_103387172	3300031573	Soil	MSDEPKPKRQRKPTLRAALEAAKAAGRPVKSATIENGKVALVFGELAADTSSEWDEALNRGKH
Ga0318561_104902191	3300031679	Soil	RRAVSKASKKTGRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0318561_106588651	3300031679	Soil	LSALLRAAEKAGKAVKSATIEDGKVTLVFGSGESAASSNDDWDKKLEELERGKH
Ga0318572_102189942	3300031681	Soil	RRKPTWSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0306917_104335691	3300031719	Soil	MSDEPKPKRQRKPTLRAALEAAKAAGRPVKSATIENGKVALVFGELAADTSSEWDEA
Ga0306917_104867822	3300031719	Soil	VSEPPNTRVRRRRRPTLSAALKAARAAGETVKSATIEDGKVTLVFGGGESVTVNANDDWDKKLEELERGKH
Ga0318500_105032902	3300031724	Soil	CLRRRLRRGRAVSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGKH
Ga0306918_103486791	3300031744	Soil	MAEPSCPSYRGVARGRPAVSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0306918_104466482	3300031744	Soil	MSAEPKPKRQRKPTLRAALEAAKAAGRPVKSATIENGKVTLVFGELAADTSNEWDEALNRGKH
Ga0318537_100628853	3300031763	Soil	TLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0318535_100431894	3300031764	Soil	MGKAPKKTVPRRRRPTLSAALKAAQKAGKPVKSATIEDGKVTLTFGDVPTESSNEWDEALSRGKH
Ga0318521_108586852	3300031770	Soil	VRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0318529_105909761	3300031792	Soil	MAEPSCPSYRGVARGRPAVSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWD
Ga0318550_101007543	3300031797	Soil	ASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGK
Ga0318497_101639432	3300031805	Soil	VGKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0318568_109646572	3300031819	Soil	VSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGKH
Ga0318511_105310511	3300031845	Soil	RKPTLRAALEAAKAAGRPVKSATIENGKVALVFGELAADTSNEWDEALNRGKH
Ga0306919_112848201	3300031879	Soil	MGGPSEKPVRKRKPTLRAALEAAQKAGKAVKSATVKDGEIVLEFGEPTAGTNDDWDRKLAELKRGKH
Ga0306919_113657792	3300031879	Soil	VSEPPKKSVRKRKPTLRAALEAAKAVGETVKSATIEDGKVTLVFGSGESVASTNDDWDRKLEELERGKH
Ga0318544_103922171	3300031880	Soil	NTIRRGRAVSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGESAADANDDWDRKLAELERGKH
Ga0306925_100490647	3300031890	Soil	MSDEPKPKRQRKPTLRAALEAAKAAGRPVKSATIENGKVTLVFGELAADTSSEWDEALNRGKH
Ga0318536_104223202	3300031893	Soil	RRKPTLSAALKAAKAVGETVKSATIEDGKVTLVFGSGESVASTNDDWDRKLEELERGKH
Ga0318551_108392482	3300031896	Soil	VSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALN
Ga0318520_107551681	3300031897	Soil	VSEPPKKSVRKRKPTLRAALVAAQKAGRSVKSATIEDGKVTLVFGEPVADANDDWDKKLTELERGKH
Ga0306923_112725491	3300031910	Soil	VSEPPNSRVRRRRRPTLSAALKAARAAGETVKSATIEDGKVTLVFGGGESVTVNANDDWDKKLEELERGKH
Ga0306921_115180182	3300031912	Soil	RGRPVSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0310912_106873761	3300031941	Soil	ELVKKSVRKRKPTLRAALEAAKKAGTPVKSAVVEDGKVSLVFGEPMADTSNEWDEALSRGKH
Ga0310916_100744432	3300031942	Soil	LLRAAEKAGKAVKSATIEDGKVTLVFGSGESAASSNDDWDKKLEELERGKH
Ga0310916_102103341	3300031942	Soil	KSVRKRKPTLRAALEAAKKAGKAVRSAVVEDGKVTLTFGDEPTPASSDEWDERLNRGKH
Ga0310909_103218164	3300031947	Soil	ASVGGTARRRRRPTLSALLRAAEKAGKAVKSATIEDGKVTLVFGSGESAASSNDDWDKKLEELERGKH
Ga0310909_108541932	3300031947	Soil	IMSDEPKPKRQRKPTLRAALEAAKAAGRPVKSATIEDGKVTLVFGELAADTSNEWDEALNRGKH
Ga0306926_105060102	3300031954	Soil	MGEPPEKSLRRRRRPTLRAALKAARAAGEKVRSATIEDGKVTLVFGSGETVTSANDDWDKKLEELERGKH
Ga0318531_105829861	3300031981	Soil	RLQRRRPKSPHNTIRRGRAVGKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0306922_112964242	3300032001	Soil	VSEPPSKRVRRQRRPTLSAALKAAKAAGQTVKSAVLDPDGRVTLTFGSGESVASTNDDWDKKLEELEHRDGKH
Ga0318507_101876651	3300032025	Soil	LSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0310911_106407971	3300032035	Soil	PKPPYNTIRRGRAVSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0318545_101841052	3300032042	Soil	KKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0318556_100867593	3300032043	Soil	VSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0318558_102705351	3300032044	Soil	RAVSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0318505_101591472	3300032060	Soil	AQEENIMSDEPKPKRQRKPTLRAALEAAKAAGRPVKSATIEDGKVTLVFGELAADTSNEWDEALNRGKH
Ga0318514_106356603	3300032066	Soil	VSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDE
Ga0306924_120725531	3300032076	Soil	RAALKAARAAGEKVRSATIEDGKVTLVFGSGETVTSANDDWDKKLEELERGKH
Ga0318525_103601532	3300032089	Soil	PYNTIRRGRAVSKASKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGEPTADTSNEWDEALNRGKH
Ga0318540_101123891	3300032094	Soil	PKPPHNTIRRGRAVSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADANDDWDRKLAELERGKH
Ga0306920_1017791231	3300032261	Soil	VSEPVKKSVRKRKPTLRAALEAAQKAGKAIKSATIEDGKVTLVFSEPTADTNDDWDRKLEELERGKH
Ga0310914_106302041	3300033289	Soil	AALEAAKAAGRPVKSATIENGKVALVFGELAADTSSEWDEALNRGKH
Ga0310914_108701212	3300033289	Soil	VSEPPKKSVRKRKPTLRAALVAAQKAGRSVKSATIEDGKVTLVFGEPVADANDDWDKKLT
Ga0318519_106717721	3300033290	Soil	HNTIRRGRAVSKALKKTVRRRKPTLSAALKAAQKAGRPVKSATIEDGKVTLVFGELAADTSNEWDEALNRGKH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062342

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences