Metagenome / Metatranscriptome Family F062006

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062006
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	91 residues
Representative Sequence	MVTVLGIVARVAIGVAMAFILSKTVPRMPNKMCRFVFLFVLCLPLNFGVNYVNVQLLGYHKMGWTGASIIALLLAIWGTFLYSPQPHNSNTP
Number of Associated Samples	106
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	18.25 %
% of genes near scaffold ends (potentially truncated)	22.14 %
% of genes from short scaffolds (< 2000 bps)	70.99 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.145 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.267 % of family members)
Environment Ontology (ENVO)	Unclassified (29.771 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.405 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.17% β-sheet: 0.00% Coil/Unstructured: 40.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF08327	AHSA1	1.53
PF13481	AAA_25	0.76
PF00072	Response_reg	0.76
PF08238	Sel1	0.76
PF00582	Usp	0.76
PF13277	YmdB	0.76
PF01063	Aminotran_4	0.76
PF01081	Aldolase	0.76
PF13857	Ank_5	0.76
PF14691	Fer4_20	0.76
PF13548	DUF4126	0.76
PF04055	Radical_SAM	0.76
PF01523	PmbA_TldD	0.76
PF08281	Sigma70_r4_2	0.76
PF02472	ExbD	0.76
PF00903	Glyoxalase	0.76
PF05015	HigB-like_toxin	0.76
PF12910	PHD_like	0.76
PF07992	Pyr_redox_2	0.76
PF07007	LprI	0.76
PF03544	TonB_C	0.76
PF02371	Transposase_20	0.76
PF01842	ACT	0.76
PF07724	AAA_2	0.76
PF01702	TGT	0.76
PF00589	Phage_integrase	0.76
PF00005	ABC_tran	0.76
PF02839	CBM_5_12	0.76
PF01850	PIN	0.76
PF03169	OPT	0.76
PF01381	HTH_3	0.76
PF13176	TPR_7	0.76
PF13181	TPR_8	0.76
PF00480	ROK	0.76
PF00146	NADHdh	0.76
PF04012	PspA_IM30	0.76
PF02518	HATPase_c	0.76
PF09594	GT87	0.76
PF04116	FA_hydroxylase	0.76
PF13193	AMP-binding_C	0.76
PF00920	ILVD_EDD	0.76
PF01797	Y1_Tnp	0.76
PF12867	DinB_2	0.76
PF10518	TAT_signal	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	1.53
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.53
COG1842	Phage shock protein A	Transcription [K]	1.53
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.53
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	0.76
COG0343	Queuine/archaeosine tRNA-ribosyltransferase	Translation, ribosomal structure and biogenesis [J]	0.76
COG0650	Formate hydrogenlyase subunit HyfC	Energy production and conversion [C]	0.76
COG0800	2-keto-3-deoxy-6-phosphogluconate aldolase	Carbohydrate transport and metabolism [G]	0.76
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.76
COG0848	Biopolymer transport protein ExbD	Intracellular trafficking, secretion, and vesicular transport [U]	0.76
COG1005	NADH:ubiquinone oxidoreductase subunit 1 (chain H)	Energy production and conversion [C]	0.76
COG1297	Predicted oligopeptide transporter, OPT family	General function prediction only [R]	0.76
COG1549	Archaeosine tRNA-ribosyltransferase, contains uracil-DNA-glycosylase and PUA domains	Translation, ribosomal structure and biogenesis [J]	0.76
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.76
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	0.76
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.76
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.76
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.15 %
Unclassified	root	N/A	48.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.15 %
Unclassified	root	N/A	48.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.15 %
Unclassified	root	N/A	48.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	32.06 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.53 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.85 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	16.03 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.16 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.53 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.85 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	15.27 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.63 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	1.53 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.53 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.85 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15.27 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.63 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	1.53 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.53 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.63 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	3.82 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3.05 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	1.53 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.53 %
Acidicapsa	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa	0.76 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.76 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.76 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.63 %
Granulicella aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	3.05 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.29 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	1.53 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.53 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.76 %
Acidicapsa dinghuensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa dinghuensis	0.76 %
Granulicella paludicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella paludicola	0.76 %
Terriglobus roseus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	0.76 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.63 %
Granulicella aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	3.05 %
Acidobacteria bacterium SCGC AG-212-P17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	1.53 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.53 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.76 %
Candidatus Koribacter versatilis Ellin345	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	0.76 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.76 %
Acidicapsa dinghuensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa dinghuensis	0.76 %
Granulicella paludicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella paludicola	0.76 %
Terriglobus roseus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001166\|JGI12694J13545_1001427	All Organisms → cellular organisms → Bacteria → Proteobacteria	2924	Open in IMG/M
3300002568\|C688J35102_119150100	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300002914\|JGI25617J43924_10030564	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300004092\|Ga0062389_104486984	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300005332\|Ga0066388_103897549	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300005335\|Ga0070666_10361313	Not Available	1040	Open in IMG/M
3300005337\|Ga0070682_101502062	Not Available	579	Open in IMG/M
3300005437\|Ga0070710_10001334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11637	Open in IMG/M
3300005437\|Ga0070710_10381826	Not Available	940	Open in IMG/M
3300005455\|Ga0070663_101044667	Not Available	712	Open in IMG/M
3300005542\|Ga0070732_10014669	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	4355	Open in IMG/M
3300005548\|Ga0070665_101719050	Not Available	634	Open in IMG/M
3300005591\|Ga0070761_10640368	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	663	Open in IMG/M
3300005602\|Ga0070762_10087892	Not Available	1778	Open in IMG/M
3300005602\|Ga0070762_10114875	Not Available	1575	Open in IMG/M
3300005602\|Ga0070762_10978934	Not Available	579	Open in IMG/M
3300005610\|Ga0070763_10517284	Not Available	684	Open in IMG/M
3300005843\|Ga0068860_101347918	Not Available	734	Open in IMG/M
3300005921\|Ga0070766_10307326	Not Available	1020	Open in IMG/M
3300005921\|Ga0070766_10708851	Not Available	682	Open in IMG/M
3300006052\|Ga0075029_100000253	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	29646	Open in IMG/M
3300006052\|Ga0075029_100004481	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7739	Open in IMG/M
3300006052\|Ga0075029_101040013	Not Available	567	Open in IMG/M
3300006059\|Ga0075017_100010410	All Organisms → cellular organisms → Bacteria	5911	Open in IMG/M
3300006102\|Ga0075015_100030126	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2468	Open in IMG/M
3300006102\|Ga0075015_100842398	Not Available	553	Open in IMG/M
3300006162\|Ga0075030_100072208	All Organisms → cellular organisms → Bacteria → Acidobacteria	2842	Open in IMG/M
3300006162\|Ga0075030_100193121	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300006162\|Ga0075030_100254539	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	1407	Open in IMG/M
3300006176\|Ga0070765_100383931	All Organisms → cellular organisms → Bacteria → Acidobacteria	1309	Open in IMG/M
3300006176\|Ga0070765_102063236	Not Available	533	Open in IMG/M
3300006893\|Ga0073928_10082706	All Organisms → cellular organisms → Bacteria → Acidobacteria	2746	Open in IMG/M
3300009038\|Ga0099829_10915432	Not Available	728	Open in IMG/M
3300009088\|Ga0099830_10533452	Not Available	959	Open in IMG/M
3300009093\|Ga0105240_10051810	All Organisms → cellular organisms → Bacteria	5163	Open in IMG/M
3300009143\|Ga0099792_10748146	Not Available	636	Open in IMG/M
3300009162\|Ga0075423_11687090	Not Available	682	Open in IMG/M
3300009522\|Ga0116218_1079657	Not Available	1492	Open in IMG/M
3300010339\|Ga0074046_10018070	All Organisms → cellular organisms → Bacteria	4996	Open in IMG/M
3300010341\|Ga0074045_10847750	Not Available	577	Open in IMG/M
3300010343\|Ga0074044_10017169	All Organisms → cellular organisms → Bacteria → Acidobacteria	5302	Open in IMG/M
3300010360\|Ga0126372_10307968	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1396	Open in IMG/M
3300010396\|Ga0134126_11493403	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300011270\|Ga0137391_10077413	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	2863	Open in IMG/M
3300012203\|Ga0137399_10928905	Not Available	733	Open in IMG/M
3300012354\|Ga0137366_11222317	Not Available	510	Open in IMG/M
3300012362\|Ga0137361_11648538	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	562	Open in IMG/M
3300012505\|Ga0157339_1013475	Not Available	782	Open in IMG/M
3300012683\|Ga0137398_10024686	All Organisms → cellular organisms → Bacteria	3316	Open in IMG/M
3300012683\|Ga0137398_10843581	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella paludicola	640	Open in IMG/M
3300012683\|Ga0137398_11126311	Not Available	539	Open in IMG/M
3300012923\|Ga0137359_10243666	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa dinghuensis	1604	Open in IMG/M
3300012925\|Ga0137419_10225217	Not Available	1401	Open in IMG/M
3300012925\|Ga0137419_11218148	Not Available	631	Open in IMG/M
3300012930\|Ga0137407_10179959	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1886	Open in IMG/M
3300012984\|Ga0164309_10649904	Not Available	830	Open in IMG/M
3300013105\|Ga0157369_10561262	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	1180	Open in IMG/M
3300013297\|Ga0157378_10548203	Not Available	1161	Open in IMG/M
3300013307\|Ga0157372_11009324	Not Available	964	Open in IMG/M
3300013307\|Ga0157372_12752482	Not Available	564	Open in IMG/M
3300014325\|Ga0163163_12873502	Not Available	537	Open in IMG/M
3300014969\|Ga0157376_10879594	Not Available	913	Open in IMG/M
3300015241\|Ga0137418_11170830	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	543	Open in IMG/M
3300015245\|Ga0137409_10729399	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300015372\|Ga0132256_100095865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2879	Open in IMG/M
3300015374\|Ga0132255_100684804	All Organisms → cellular organisms → Bacteria	1521	Open in IMG/M
3300017822\|Ga0187802_10114432	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1019	Open in IMG/M
3300017823\|Ga0187818_10149842	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300017943\|Ga0187819_10150894	All Organisms → cellular organisms → Bacteria	1384	Open in IMG/M
3300017955\|Ga0187817_10427379	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300017966\|Ga0187776_10797742	Not Available	677	Open in IMG/M
3300017972\|Ga0187781_10078007	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2288	Open in IMG/M
3300017972\|Ga0187781_10111965	Not Available	1900	Open in IMG/M
3300017973\|Ga0187780_10022548	All Organisms → cellular organisms → Bacteria	4508	Open in IMG/M
3300017988\|Ga0181520_10905173	Not Available	588	Open in IMG/M
3300018038\|Ga0187855_10254490	Not Available	1030	Open in IMG/M
3300018043\|Ga0187887_10455692	All Organisms → cellular organisms → Bacteria → Acidobacteria	754	Open in IMG/M
3300018090\|Ga0187770_10143474	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1815	Open in IMG/M
3300020140\|Ga0179590_1124007	Not Available	701	Open in IMG/M
3300020580\|Ga0210403_11307579	Not Available	553	Open in IMG/M
3300020581\|Ga0210399_10005723	All Organisms → cellular organisms → Bacteria	9657	Open in IMG/M
3300020581\|Ga0210399_10131134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2063	Open in IMG/M
3300020582\|Ga0210395_10015002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5717	Open in IMG/M
3300020582\|Ga0210395_10317089	Not Available	1172	Open in IMG/M
3300020583\|Ga0210401_10828928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300021180\|Ga0210396_10211724	Not Available	1729	Open in IMG/M
3300021559\|Ga0210409_10199299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1824	Open in IMG/M
3300022557\|Ga0212123_10321925	Not Available	1071	Open in IMG/M
3300024288\|Ga0179589_10298540	Not Available	724	Open in IMG/M
3300025913\|Ga0207695_10157366	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	2206	Open in IMG/M
3300025924\|Ga0207694_10327693	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	1265	Open in IMG/M
3300026551\|Ga0209648_10011772	All Organisms → cellular organisms → Bacteria → Acidobacteria	7606	Open in IMG/M
3300026557\|Ga0179587_10161128	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300027432\|Ga0209421_1045973	Not Available	867	Open in IMG/M
3300027545\|Ga0209008_1000937	All Organisms → cellular organisms → Bacteria	7867	Open in IMG/M
3300027591\|Ga0209733_1034228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1364	Open in IMG/M
3300027652\|Ga0209007_1000002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	263555	Open in IMG/M
3300027652\|Ga0209007_1014665	Not Available	2049	Open in IMG/M
3300027842\|Ga0209580_10115087	Not Available	1309	Open in IMG/M
3300027842\|Ga0209580_10145033	Not Available	1166	Open in IMG/M
3300027855\|Ga0209693_10370651	Not Available	693	Open in IMG/M
3300027879\|Ga0209169_10049778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2182	Open in IMG/M
3300027884\|Ga0209275_10757391	Not Available	560	Open in IMG/M
3300027889\|Ga0209380_10292629	Not Available	956	Open in IMG/M
3300027903\|Ga0209488_10634394	Not Available	772	Open in IMG/M
3300027911\|Ga0209698_10003065	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	18713	Open in IMG/M
3300027911\|Ga0209698_10091140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17	2565	Open in IMG/M
3300027911\|Ga0209698_10452067	All Organisms → cellular organisms → Bacteria → Acidobacteria	999	Open in IMG/M
3300028017\|Ga0265356_1011774	Not Available	965	Open in IMG/M
3300030940\|Ga0265740_1008648	Not Available	891	Open in IMG/M
3300031057\|Ga0170834_110905313	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus roseus	1616	Open in IMG/M
3300031474\|Ga0170818_108845161	Not Available	586	Open in IMG/M
3300031715\|Ga0307476_10017513	All Organisms → cellular organisms → Bacteria	4593	Open in IMG/M
3300031715\|Ga0307476_10134378	Not Available	1768	Open in IMG/M
3300031718\|Ga0307474_10003880	All Organisms → cellular organisms → Bacteria	10755	Open in IMG/M
3300031754\|Ga0307475_11109013	Not Available	619	Open in IMG/M
3300031754\|Ga0307475_11234279	Not Available	581	Open in IMG/M
3300031823\|Ga0307478_10190363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1646	Open in IMG/M
3300031823\|Ga0307478_11287315	Not Available	608	Open in IMG/M
3300031938\|Ga0308175_100049167	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	3636	Open in IMG/M
3300032174\|Ga0307470_10924868	All Organisms → cellular organisms → Bacteria → Acidobacteria	687	Open in IMG/M
3300032829\|Ga0335070_10002733	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	20500	Open in IMG/M
3300032893\|Ga0335069_10861155	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	1016	Open in IMG/M
3300032895\|Ga0335074_10050911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5701	Open in IMG/M
3300032895\|Ga0335074_10764633	All Organisms → cellular organisms → Bacteria → Acidobacteria	912	Open in IMG/M
3300033412\|Ga0310810_11318704	Not Available	565	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.26%
Host-Associated	Host-Associated	13.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.70%
Aquatic	Environmental → Aquatic	17.56%
Plants	Host-Associated → Plants	13.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.69%
Sediment	Environmental → Aquatic → Sediment	9.92%
Freshwater	Environmental → Aquatic → Freshwater	6.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.29%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.53%
Roots	Host-Associated → Plants → Roots	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.93%
Loam	Environmental → Terrestrial → Soil → Loam	19.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.11%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.82%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.53%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.76%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.05%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.05%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.53%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.53%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.76%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.76%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.27%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	9.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.11%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.11%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.58%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.58%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.05%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.05%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.29%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.29%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.29%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.29%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.29%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.53%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.53%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.53%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.53%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.76%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.76%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.76%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028017	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4	Host-Associated	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12694J13545_10014273	3300001166	Forest Soil	MPHLLLFTQKTMSFVLGSIAGLTIPLGFLFILSKTVTIMPNKVCRFVFLFALLVPFDFAMNYINIWAFGYHKIGWGGALIIALPLAAYGTFLPLQPHDSNRP*
C688J35102_1191501002	3300002568	Soil	MLMGFAFVISKTVQSMPNKVCRFAFLFVVCVPLNFAANYVNVRTLGYHKMKWIGAFIIALLFATWGTLWPPQPHSSNTP*
JGI25617J43924_100305641	3300002914	Grasslands Soil	MVTVLGIVARVAIGVAMAFILSKTVPRMPNKMCRFVFLFVLCLPLNFGVNYVNVQLLGYHKMGWTGASIIALLLAIWGTFLYSPQPHNSNTP*
Ga0062389_1044869842	3300004092	Bog Forest Soil	NKMYRFVFLFILFLPMNFVINYFDVQLLGYHKMGWTGAIIIALLVAIWGAFLYLPQPRSSDTP*
Ga0066388_1038975492	3300005332	Tropical Forest Soil	MPPVLLGIVAKCAITVGIAFLLGKTVPSMPNKLFRFVFLFMLGVPLNFVINYVNVRLLGYHKMSWTGAFVISTLGAVLFTFWPPQPHGSDTP*
Ga0070666_103613131	3300005335	Switchgrass Rhizosphere	MAMFHQLGDRNLDAERPNLLRFTQKTMLPILGIVARIAIYVGIAFIISKTAPRIPNKWVYRFVFLFVLGLPMNFVVNYVNVRLLGYHKMGWGGASIIALSLALFFATFGNFWESQPTQLESKSRLPDNCR*
Ga0070682_1015020622	3300005337	Corn Rhizosphere	MLSLLVSIIASCAIVLGFAFILSKTAASVTNKVGRFVVLFLLCLPLNFVANYVNVRLLGYHKMGWTGASIIALAFATFGTFLPPQPHD
Ga0070710_1000133412	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MVTVLGIVARVAIGVALAFTLSMTVPRMANKMCRFVFLFALFLPVNFGVNYVNVQLLGYHKMGWTGASIIALLVALWGTFLYPPQPHNSNTP*
Ga0070710_103818262	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MPSMLLAIVARCAIIVGIAFIFSRTLLIMPNKVWRFVFLFVLCVPLNFFINEVDVQLRGYHRMGWTGASIGALLFAAIGTFLRPQPHNSTTP*
Ga0070663_1010446672	3300005455	Corn Rhizosphere	MLPILGIVARIAIYIGIAFIISKTAPRIPNKWVYRFVFLFVLGLPMNFVVNYVNVRLLGYHKMGWGGASIIALSLALFFATF
Ga0070732_100146692	3300005542	Surface Soil	MLFVLGIVARLAAVLGMVFILTKTLPSMPNKVCRFFLLFILCVPWNFVVNYFDVRLLGYHEMDWTGASIIALLFATFGTFWLPQSPNSNTP*
Ga0070665_1017190501	3300005548	Switchgrass Rhizosphere	MLPILGIVARIAIYIGIAFIISKTAPRIPNKWVYRFVFLFVLGLPMNFVVNYVNVRLLGYHKMGWGGASIIALSLALFFATFGNFWESQPTQLESKSRLPDNCR*
Ga0070761_106403681	3300005591	Soil	MATVFLFVAGVVARVAIAVAIVFILGETLPRMANKMCRFVFLFVLFLPVNFGINYVNVQLLGYHKMGWTGASIIALLVALWGTFLDLPQPHNSNTP*
Ga0070762_100878922	3300005602	Soil	MVTVLGIVARVAIGVAIGFILSMTVPRMANKMCRFVFLFVLFLPVNVGVNYVNVQLLGYHKMGWTGASIIALLVALWGTFLYPPQPHNSNTS*
Ga0070762_101148751	3300005602	Soil	LFGSAFILSKTAPSIPDKWVYRFLFLFVLGVPLNFVVNYFDVRLLGYHKMGWGGASIIALLLALFLATFGTFWEPQPTQLERKSRLR*
Ga0070762_109789341	3300005602	Soil	MLPIVGIIAGLAILVGFAFILSKTVPSMPNKVCRFVFLFVLCVPLNFVVNYVDVWAFGYHKMGWTGALIIALLPATYGTFLPPQLHNSNKP*
Ga0070763_105172842	3300005610	Soil	PYLLAFIQKGMVTVLGIVARVAIGVAIGFILSMTVPRMANKMCRFVFLFVLFLPVNVGVNYVNVQLLGYHKMGWTGASIIALLVALWGTFLYPPQPHNSNTS*
Ga0068860_1013479182	3300005843	Switchgrass Rhizosphere	MAMFHQLGDRNLDAERPNLLRFTQKTMLPILGIVARIAIYIGIAFIISKTAPRIPNKWVYRFVFLFVLGLPMNFVVNYVNVRLLGYHKMGWGGASIIALSLALFFATFGNFWESQPTQLESKSRLPDNCR*
Ga0070766_103073262	3300005921	Soil	MLPILGIVARIAILFGSAFILSKTAPSIPDKWVYRFLFLFVLGVPLNFVVNYFDVRLLGYHKMGWGGASIIALLLALFLATFGTFWEPQPTQLERKSRLR*
Ga0070766_107088512	3300005921	Soil	MVTVLGIVARVAIGVAIGFILSMTVPRMANKMCRFVFLFVLFLPVNVGVNYVNVQLLGYHKMGWTGASIIALLVALWGTFLYPP
Ga0075029_10000025326	3300006052	Watersheds	MLFMLVGIIAECAILVAVAFILSRAVPNMPNKVCRFVFLFVLCVPLNFVVNYVNVWTLGYHKMRWTGSFIIALLFATFGVLATATAQLKD*
Ga0075029_10000448110	3300006052	Watersheds	AIGVAIAFILSRTVPRMANKIWRFVFLFVLFLPLNFGVNYVNVQLLGYHKMGWTGASVIALLLAVSGTFLYSPQLHNSNTP*
Ga0075029_1010400131	3300006052	Watersheds	MLSVLGIVARCAVLVGIAFILSKTVPSMPNKVCRFVFLFVLWVPFNFAINYVNVRLLGYHKMGWTAASIIALLFATFGTFWPPQPHDSITPRPAFQNRRNGANRAPT
Ga0075017_1000104106	3300006059	Watersheds	MLFMLVGIIAECAILVAVAFILSRAVPNMPNKVCRFVFLFVLCVPLNFVVNYVNVWTLGYHKMRWTGSFIIALLFATFGTFWPPQPHNSKTR*
Ga0075015_1000301265	3300006102	Watersheds	MLVGIIAECAILVAVAFILSRAVPNMPNKVCRFVFLFVLCVPLNFVVNYVNVWTLGYHKMRWTGSFIIALLFATFGTFWPPQPHNSKTR*
Ga0075015_1008423981	3300006102	Watersheds	MAFILSKTVPRMPNKMCRFVFLFVLCLPLNFGVNYVNVQLLGYHKMGWTGASIIALLLAIWGAFLYSPQPHNSNTP*
Ga0075030_1000722082	3300006162	Watersheds	MLSVLGIVARCAVLVGIAFILSKTVPSMPNKVCRFVFLFVLWVPFNFAINYVNVRLLGYHKMGWTAASIIALLFATFGTFWPPQPHDSNTA*
Ga0075030_1001931212	3300006162	Watersheds	MVTVLGIVARLAIGVAIAFILSRTVPRMANKIWRFVFLFVLFLPLNFGVNYVNVQLLGYHKMGWTGASVIALLLAVSGTFLYSPQLHNSNTP*
Ga0075030_1002545392	3300006162	Watersheds	AIGVAIAFILSMTVPRMANKMCRFVFLFVLFLPVNFGVNYVNVQLLGYHKMGWTGASIIALLVARGTFLYPPQPHNSNTP*
Ga0070765_1003839312	3300006176	Soil	MLPILGIVARIAILLGSAFILSKIAPVIPSKWVYRFVFLFALGVPLNFAANYVDVRLLGYHKMGWGGASIIALLLALFFATFGTFWEPTTDTIRKRISLRG*
Ga0070765_1020632362	3300006176	Soil	MLTVVGIVARCAILVGFAFILSKTEASVPNKACRFVVLFVLCVPLNLVINYVNVRLLGYHKMGWTGASIIALVFATFGTFVPPQPHNSNTP*
Ga0075021_101540371	3300006354	Watersheds	RFVFLFVLCVPFNFVINDVNVRLLGYHKMGWTGASIIALVFATFGTFLPPQPHNSNIP*
Ga0073928_100827062	3300006893	Iron-Sulfur Acid Spring	MLSVLGIAARVAIALGMIVIVSKTVPSIPNKVYRFVFLFVLCVLFSFVINYFDVLLLGYHNMGLGGASIIALVFATFGIFWEPPPRNSNAP*
Ga0099829_109154321	3300009038	Vadose Zone Soil	VAMAFILSKTVPRMPNKMCRFLFLFGLCLPLNFGVNYVNVQLLGYHKMGWTGASIIALLVALWGTLLYPPQPHNSNTP*
Ga0099830_105334521	3300009088	Vadose Zone Soil	MVTVLGIVARVAIAVAIAFILSKTVPRMANKMCRFVFLFVLFLPVNFGVNYVNVELLGYHKMGWTGASIIALLVALWGTLLYPPQPHNSNTP*
Ga0105240_100518105	3300009093	Corn Rhizosphere	MLISVVVEVALFLGAAFILSTVPSMPNKVSRFVFLFVLCVPLVFVINYLDVRLLGYPEMGWTAASIIGLLSAAFGTFLPRQRHNSNAP*
Ga0099792_107481461	3300009143	Vadose Zone Soil	MLPVLGIVARCAIVGGFAFILSRTVPSMPNKVCRFVFLFALFVPLNFVVNYVNVWAFGYHKIGWTAAFIGALLLATFGTLLPPQPHNSNTP*
Ga0075423_116870901	3300009162	Populus Rhizosphere	MLPILGIVARIAIYIGIAFIISKTAPRIPNKWVYRFVFLFVLGLPMNFVVNYVNVRLLGYHKMGWGGESIIALSLALFFATFWNFWESQPTQLESKSRFPDSCR*
Ga0116218_10796571	3300009522	Peatlands Soil	MVTILGIVARVAILVAMAFILSITVPRMPNKICRFLFLFVLCLPLNFGVNYVNVQLLGYHKMGWTGASIIALVLAIWGTFLYSPQPHDSNTR*
Ga0074046_100180706	3300010339	Bog Forest Soil	MVTVLGIVTRVALGVAMAFILSKTVPRMPNKMCRFVFLFVLCLPVNFGVNYVNVQLLGYHKMGWTGASIIALLLAIRGTFLYSPQPHSSNTP*
Ga0074045_108477501	3300010341	Bog Forest Soil	MVTVLGIVTRVALGVAMAFILSKTVPRMPNKMCRFVFLFVLCLPVNFGVNYVNVQLLGYHKMGWTGASIIALLLAIWLTFLYSPQPHSSNTP*
Ga0074044_100171693	3300010343	Bog Forest Soil	MLYALGIVVTWAIMVGFAFILSRSVPSMPNNVYRFMLLFVLFLLFSFALNYVNVWAFGYHKIGWAVASIGALLLATFTTFFAPEPNNTNRP*
Ga0126372_103079683	3300010360	Tropical Forest Soil	MLPVLGMVARVAVLVGAAFILGKTVASIHNKVGRFFFLLVLCVPLNFLFNYVNVQLLGYHKMGWTGASVIALIFATWGTFLGPQPHKPQTP*
Ga0134126_114934032	3300010396	Terrestrial Soil	MLTVLGIVAQVAIAVAFALVLSKTVPRLANKTLRFLFLFLLCLPLNFGANYVNVQFLGYHKMGRTAASIIALLLAIWGTFLHSPQPHNSSTR*
Ga0137391_100774134	3300011270	Vadose Zone Soil	LYCIIYAEINRIAIAAGVAFILSKTLPNIMNKVYRFVFLFILGVPLNFVINYVNVRLLGYHKMGWTGASTIALLLAIFGTFWQPQPAQLEKQSRLRG*
Ga0137399_109289052	3300012203	Vadose Zone Soil	LGAVARFALGVVASFVILVAAAFILRKTAGIIPNKVCRFFSLFVLCVPLNLVINYVNVRLLGFHKMDWTGASIVALLLATLGTFYWSPQPHNSNTL*
Ga0137366_112223171	3300012354	Vadose Zone Soil	MVAVLGIVARVAIGVAMAFILSKTVPRMPNKVCRFVFLFVMCLLLNFGVNYVNVQLLGYHKMGWTGASIIALLLAIWGTFLYSPQPHNSSTR*
Ga0137361_116485382	3300012362	Vadose Zone Soil	MLSILIAIIARSLIIVAGAFILSRTVPSMPSKACRFVFLFVLWVPLNFVVNYVNVLTLGYHKISWTGAFIMALILATCGTFWPPEPHDSNTP*
Ga0157339_10134751	3300012505	Arabidopsis Rhizosphere	MAMFHQLGDRNLDAERPNLLRFTQKTMLPILGIVARIAIYVGIAFIISKTAPRIPNKWVYRFVFLFVLGLPMNFVVNYVNVRLLGYHKMGWGGASIIALSLALFFATFGNFWESQPTQLESKSRLPDSCR*
Ga0137398_100246862	3300012683	Vadose Zone Soil	MVTVLGIIARVAIAVAIAFILSKTVPRMANKMCRFVFLFVLFLPVNFGVNYVNVQLLGYHKMGWTGASIIALLVALWGTFLYPPQPHNSNTPLT*
Ga0137398_108435811	3300012683	Vadose Zone Soil	KTAPSIPNKWVYRFVFLFVLGVPLNFVVNYVNVRLLGYHKMGWGGASTIALLLALFFATFGTFWEPQPTQLERKSRLRG*
Ga0137398_111263111	3300012683	Vadose Zone Soil	MLPIFVGIVARCAIGVGVAFILSRTVPSMPNKVCRFVFLFVLFVPWNFVINYVNVWAFGYHKIGWTAAFIGALLLATLGTFWPPQPHNSNTP*
Ga0137359_102436662	3300012923	Vadose Zone Soil	MVTVLGIVARVAIGVAMAFILSKTVPRMPNKTCRFLFLFLLCLPLNFGANYVNVQLLGYHKMGWTGASIIALLLAIWGTFLYPQTHSSSTR*
Ga0137419_102252172	3300012925	Vadose Zone Soil	MLPILGIVARIAISVGGAFILSKTAPSIPNKWVYRFVFLFVLGVPLNFVVNFVNVRLLGYHKMGWGGASIIALLLALFFATFGTFWDSQPTQLETKSRLRG*
Ga0137419_112181481	3300012925	Vadose Zone Soil	MLPIFVAVIARCAVVVGFAFILGGAVPIMPRNKVGRFVSLFALFVPLNFVINYVNVWTRGYHKMGWTGTFIFSLLFATWGTFLPPQPHNDSADVQ*
Ga0137407_101799593	3300012930	Vadose Zone Soil	MLPVLLGIFARCAIAVGIAFILSKTVPSMHNKVCRFVFLFVLWVPLNFVINYVNVRLLGYHKMSWTGALVIALLVASLFTLWPPQLHNSNTP*
Ga0164309_106499042	3300012984	Soil	MLLAIIARCAIILGIAFIFSRTLLIMPNKVWRFVFLFVLCVPLNFFINEVNVQLLGYHKMGWTGASIGALLFAAIGTFWRPQPHNSTTP*
Ga0157369_105612622	3300013105	Corn Rhizosphere	MLISVVVEVALFLGAAFILSTVPSMPNKVSRFVFLFVLCVPLVFVINYLDVRLLGYPEMGWTAASIIGLLSAAFGTFLP
Ga0157378_105482031	3300013297	Miscanthus Rhizosphere	MLPILGIVARIAIYIGIAFIISKTAPRIPNKWVYRFVFLFVLGLPMNFVVNYVNVRLLGYHKMGWGGASIIALSLALFFATFGNFWESQPTQLESKSRLPDSCR*
Ga0157372_110093241	3300013307	Corn Rhizosphere	MLSILGLVARLAILVGMAFILSKTVPSMPNKLCRFVFLFVLCVPLNFVGNYFDIRLFGYHNMSWAGASIIALIFAAFGTFWPPQPHNSNLE*
Ga0157372_127524821	3300013307	Corn Rhizosphere	MLSLLVSIIASCAIVLGFAFILSKTAASVTNKVGRFVVLFLLCLPLNFVANYVNVRLLGYHKMGWTGASIIALAFATFGTFLPPQPHDSNIP*
Ga0163163_128735021	3300014325	Switchgrass Rhizosphere	MLPILGIVARIAIYIGIAFIISKTAPRIPNKWVYRFVFLFVLGLPMNFVVNYVNVRLLGYHKMGWGGASIIALSLALFFATFGNFWESQPTQLE
Ga0157376_108795941	3300014969	Miscanthus Rhizosphere	MAMFHQLGDRNLDAERPNLLRFTQKTMLAILGIVARIAIYIGIAFIISKTAPRIPNKWVYRFVFLFVLGLPMNFVVNYVNVRLLGYHKMGWGGASIIALSLALFFATFGNFWESQPTQLESKSRLPDNCR*
Ga0137418_111708301	3300015241	Vadose Zone Soil	MLPLLVSIIAGCAILVGFAFILSKTVPIMPNKVCRFVFLFILCVPLNFVVNYVNVWTLGYHKMSWTGAVVIALILATYGTFLSSQPHNSN
Ga0137409_107293992	3300015245	Vadose Zone Soil	MLHIFVAVIARCAVVVGFAFILGGTVPIMPRNKVGRFVSLFALFVPLNLVINYVNVWTRGYHKMGWTGTFIFSLLFATWGTFLPPQPHNDSADVQ*
Ga0132256_1000958655	3300015372	Arabidopsis Rhizosphere	MLPILGIVARIAIYVGIAFIISKTAPRIPNKWVYRFVFLFVLGLPMNFVVNYVNVRLLGYHKMGWGGASIIALSLALFFATFGNFWESQPTQLESKSRLPDSCR*
Ga0132255_1006848041	3300015374	Arabidopsis Rhizosphere	GDRNLDAERPNLLRFTQKTMLPILGIVARIAIYVGIAFIISKTAPRIPNKWVYRFVFLFVLGLPMNFVVNYVNVRLLGYHKMGWGGASIIALSLALFFATFGNFWESQPTQLESKSRLPDSCR*
Ga0187802_101144322	3300017822	Freshwater Sediment	MLFVVGIVVTCAIAVGFAFILGKALPSMPNKVCRFLFLFVLSVPMSFVINYVNVWTLGYHKRGWTGVVIIALLGATAGTFWTPQPRNSKTP
Ga0187818_101498422	3300017823	Freshwater Sediment	MLPVLGIVVKLAIYAGVAFILSKTLPSMPNKVCRFVFLFVLCVPLNFVINGLNVRLLGYHKMGWTEASIIALLIALLFAAIGTSLWSPQPHNSNAP
Ga0187819_101508941	3300017943	Freshwater Sediment	MAFILSKTLPSMPNKVCRFVFLFVLCVPLNFVINYFDVRLLGLPKMGWTGASIIALLIAAFGTFLWSPQPQNSNAP
Ga0187817_104273792	3300017955	Freshwater Sediment	MLAVLEGIVVRLAILVGMAFILSKTLPSMPNKVCRFVFLFVLCVPLNFVINYFDVRLLGLPKMGWTGASIIALLIAAFGTFLWSPQPQNSNAP
Ga0187778_101820281	3300017961	Tropical Peatland	MPNKLCRFAFLFVLCVPLNFVINYINVWALGYHKMSWAGSSIIALLFATFGTFWPPQAPNSDTP
Ga0187776_107977422	3300017966	Tropical Peatland	AILVGMAFILGKTVPSMPNKVCRFVFLFVLCVPLNFVMNYVDARLIGYHTMGWTRASIIALLFATFGTFWPPQPHNSNTP
Ga0187781_100780073	3300017972	Tropical Peatland	MLLVLGIVTELAILLVVAFILSKVASMPNKVCRFVFLFALCVPLNLVINYFNVRLLGYHKMGWIGSSIIALLLAAFGTFLWSPQPHSSNAP
Ga0187781_101119652	3300017972	Tropical Peatland	MLTVLGFVAHFAFLWTAAFVLNKTVPRLANMACRFALLFVLCVPLNFIINWFNVRLLGYHKMGWTGASVIALVLATFGTFYYSPRPRNSDTR
Ga0187780_100225483	3300017973	Tropical Peatland	MLPVLGIVARCAILVGMAFILGKTVPSMPNKVCRFVFLFVLCVPLNFVMNYVNVRLLGYHRMGWTGASIIALLFATVGTFWPPEPRDSNAL
Ga0181520_109051731	3300017988	Bog	MLYILGIVARIAIYVGSAFILSKTAPSIPNKWVYRFVFLFVVCVPLNFVVNYVNVRLLGYHKMGWGGASTIALLVALFFGTFGTFWEPQPTQLEGKSRLQE
Ga0187855_102544902	3300018038	Peatland	MLPILGIVARIAILLGSAFILSKIAPVIPSKWVYRFVFLFALGVPLNFAANYVDVRLLGYHKMGWGGASIIALLLALFFATFGTFWEPTTDTIRKRISLRG
Ga0187887_104556922	3300018043	Peatland	MIPILGIVARIAILLGSAFILSKIAPVIANKWVYRFVFLFALGVPLNFAANYVDVRLLGYHKMGWGGASIIALLLALFFATFGTFWEPTTDTIRKRISLRG
Ga0187770_101434741	3300018090	Tropical Peatland	MAFILGKTVPSMPNKVCRFVFLFVLCVPLNFVMNYVNVRLLGYHGMGWTGASIVALLFATVGTFWPPETRGSNAL
Ga0179590_11240071	3300020140	Vadose Zone Soil	MLPVLGIIVICAITVGIAFIVSKTMPSMPNKVCRFVFLFALGVPYNFVLNYVYVWTLGYHKMGWTGVIIMALLLATYGIFLPPQSHNPNTL
Ga0210403_113075791	3300020580	Soil	LGERNRRKRPYLLAFIQKGMVTVLGIVARVAIGVAIGFILSMTVPRMANKMCRFVFLFVLFLPVNVGVNYVNVQLLGYHKMGWTGASIIALLVALWGTFLYPPQPHNSNTS
Ga0210399_100057231	3300020581	Soil	MAFILSKTVPSMPNKVCRFVFLFILCVPLNFLVNYFDVRLLGRHHMGWTGASVIALVFATFGTFWPPQPHNSNTA
Ga0210399_101311342	3300020581	Soil	MVTVLGIVARVAIGVAMAFILSKTVPRMANKMCRFVFLFVLFLPVNFGVNYVNVQLLGYHKMGWTGASIIALLLAIWGTFLHSPQPHDSNTP
Ga0210395_100150025	3300020582	Soil	MLFVVGIVVTCAIAVGFAFILGKTLPSMPNKVCRFLFLFVLGVPMSFVINYVNVWTLGYHKRGWTGVLIIALLGATAGTFWTPQPRNSKTP
Ga0210395_103170892	3300020582	Soil	MLPILGIVARIAILFGSAFILSKTAPSIPDKWVYRFLFLFVLGVPLNFVVNYFDVRLLGYHKMGWGGASIIALLLALFLATFGTFWEPQPTQLERKSRLR
Ga0210401_108289281	3300020583	Soil	MVTVLGIVARVAIAVAMAFILSKTMPRMANKMCRFIFLFVLFLPVNFGVNYVNVQLLGYHKMGWTGASIIALLFAIWGTFLYSPQPHNSNTP
Ga0210396_102117241	3300021180	Soil	LFGSAFILSKTAPSIPDKWVYRFLFLFVLGVPLNFVVNYFDVRLLGYHKMGWGGASIIALLLALFLATFGTFWEPQPTQLERKSRLR
Ga0210409_101992991	3300021559	Soil	RVAIAVAMAFILSKTMPRMANKMCRFIFLFVLFLPVNFGVNYVNVQLLGYHKMGWTGASIIALLFAIWGTFLYSPQPHNSNTP
Ga0212123_103219252	3300022557	Iron-Sulfur Acid Spring	MLSVLGIAARVAIALGMIVIVSKTVPSIPNKVYRFVFLFVLCVLFSFVINYFDVLLLGYHNMGLGGASIIALVFATFGIFWEPPPRNSNAP
Ga0179589_102985401	3300024288	Vadose Zone Soil	MSERNLDAHGPNLLLFTQKTMSSLLGIITRIAIAVGMAFILSKTVPSIPNKWVYRFVFLFVVGVPFNFVVNYVNVRLLGYHEMGWGGASVISLFIALFFATFGTSWEPQPAHIERKSR
Ga0207699_102634511	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MPNKVWRFVFLFVLCVPLNFFINEVDVHLRGYHKMGWTEASIGALLFAAIGTFLRPQPHNSTTP
Ga0207695_101573662	3300025913	Corn Rhizosphere	MLISVVVEVALFLGAAFILSTVPSMPNKVSRFVFLFVLCVPLVFVINYLDVRLLGYPEMGWTAASIIGLLSAAFGTFLPRQRHNSNAP
Ga0207694_103276933	3300025924	Corn Rhizosphere	MLISVVVEVALFLGAAFILSTVPSMPNKVSRFVFLFVLCVPLVFVINFLDVRLLGYPEMGWTAASIIGLLSAAFGTFLPRQRHNSNAP
Ga0207665_108047302	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MPNKVWRFVFLFVLCVPLNFFINEVDVHLRGYHKTGWTEAFIGALLFAAIGTFLRPQPHNSTTP
Ga0209648_100117723	3300026551	Grasslands Soil	MAFILSKTVPRMPNKMCRFVFLFVLCLPLNFGVNYVNVQLLGYHKMGWTGASIIALLLAIWGTFLYSPQPHNSNTP
Ga0179587_101611282	3300026557	Vadose Zone Soil	MLPILGIVARIAISVGGAFILSKTAPSIPNKWVYRFVFLFVLGVPLNFVVNFVNVRLLGYHKMGWGGASIIALLLALFFATFGTFWDSQPTQLETKSRLRG
Ga0209421_10459732	3300027432	Forest Soil	MAYILSKTVPRIPNKVYRFVFLLVLCVPLNFAVNYVNVTCFGYHKMGWTGASIIAFLLAALGTFWPPQPHSSNTP
Ga0209008_10009371	3300027545	Forest Soil	MVTVFGIVAQVAITVAMAFILSKTVPLMPNKVCRFVLLFVLCLPLNFGVNYVNVQLLGYHKMGWTGASIIALLLAIWGTFLYSPQRHNSSTT
Ga0209733_10342281	3300027591	Forest Soil	MLSLLVSIIASCAILVGFAFILSKTVASVTNKVCRFVVLFVLCVPLNFVINYVNVRLLGYHKMGWTGASIIALLVALWGTFLYPPQPHNSNTP
Ga0209007_1000002104	3300027652	Forest Soil	MSFVLGSIAGLTIPLGFLFILSKTVTIMPNKVCRFVFLFALLVPFDFAMNYINIWAFGYHKIGWGGALIIALPLAAYGTFLPLQPHDSNRP
Ga0209007_10146651	3300027652	Forest Soil	MLSLLVSIIASCAILVGFAFILSITVPSVPNKVCRFVVLFVLCVPLNFVMNYVDVRLLGYHKMGWTVVSIIALVFATFGTFVPPQPHNSNTP
Ga0209580_101150872	3300027842	Surface Soil	TLPSMPNKVCRFFLLFILCVPWNFVVNYFDVRLLGYHEMDWTGASIIALLFATFGTFWLPQSPNSNTP
Ga0209580_101450332	3300027842	Surface Soil	MVTILGIVARVVIGVAIAFILSMTVPRMANKMCRFVFLFVLFLPVNFGVNYVNVQLLGYHKMGWTGASIIALLLALWGTFFYPPQPDNSDTP
Ga0209693_103706511	3300027855	Soil	PYLLAFIQKGMVTVLGIVARVAIGVAIGFILSMTVPRMANKMCRFVFLFVLFLPVNVGVNYVNVQLLGYHKMGWTGASIIALLVALWGTFLYPPQPHNSNTS
Ga0209169_100497783	3300027879	Soil	LFGSAFILSKTAPSIPDKWVYRFLFLFVLGVPLNFVVNYFDVRLLGYHKMGWGGASIIALLLALFLATFGTFWEPQPTELERKSRLR
Ga0209275_107573911	3300027884	Soil	MLPIVGIIAGLAILVGFAFILSKTVPSMPNKVCRFVFLFVLCVPLNFVVNYVDVWAFGYHKMGWTGALIIALLPATYGTFLPPQLHNSNKP
Ga0209380_102926292	3300027889	Soil	ARIAILFGSAFILSKTAPSIPDKWVYRFLFLFVLGVPLNFVVNYFDVRLLGYHKMGWGGASIIALLLALFLATFGTFWEPQPTQLERKSRLR
Ga0209488_106343941	3300027903	Vadose Zone Soil	MLPVLGIVARCAIVGGFAFILSRTVPSMPNKVCRFVFLFALFVPLNFVVNYVNVWAFGYHKIGWTAAFIGALLLATFGTLLPPQPHNSNTP
Ga0209698_1000306514	3300027911	Watersheds	MVTVLGIVARLAIGVAIAFILSRTVPRMANKIWRFVFLFVLFLPLNFGVNYVNVQLLGYHKMGWTGASVIALLLAVSGTFLYSPQLHNSNTP
Ga0209698_100911402	3300027911	Watersheds	MVTVLGIVARVAIGVAIAFILSMTVPRMANKMCRFVFLFVLFLPVNFGVNYVNVQLLGYHKMGWTGASIIALLVARGTFLYPPQPHNSNTP
Ga0209698_104520671	3300027911	Watersheds	VGIAFILSKTVPSMPNKVCRFVFLFVLWVPFNFAINYVNVRLLGYHKMGWTAASIIALLFATFGTFWPPQPHDSNTA
Ga0265356_10117741	3300028017	Rhizosphere	MLPILGIVARVAILLGSAFILSKTAPSIPNKWVYRFVFLFALGLPLNFVGNYVDVRLLGYHKMGWGGASIIALLLALFFATFGT
Ga0265740_10086482	3300030940	Soil	MLPILGIVARVAILLGSAFILSKTAPSIPNKWVYRFVFLFALGLPLNFVGNYVDVRLLGYHKMGWGGASIIALLLALFFATFGTFWEPQPTQLERKSRLRG
Ga0170834_1109053131	3300031057	Forest Soil	FAFILGRTVPSMPNKVCRFVFLFALGVPMIFLVNYVDVRTLGYHKMDWTGAVIIALLCATWGTFWNPQPRN
Ga0170818_1088451611	3300031474	Forest Soil	MLFVLGIVVRFALLVGMAFICGKTVPRMPNKVSRFFLLFVLCVPWNFVVGYFDVQLLGYHKMGWTGASILALLFAAVGTFWPPQPAQLEKQSRLRG
Ga0307476_100175134	3300031715	Hardwood Forest Soil	MVTVLGIVARVAIAVALAFILSETVPRMANKMCRFVFLFVLFLPVNFGVNYVNVQLLGYHKMGWTGASIIALLVALWGTFLSPPQPHNSNTP
Ga0307476_101343781	3300031715	Hardwood Forest Soil	MLFVLGIVARLAAVLGMVFILTKTLPSMPNKVCRFFLLFILCVPWNFVVNYFDVRLLGYHEMDWTGASIIALLFATFGTFWLRQSPNSNTP
Ga0307474_100038801	3300031718	Hardwood Forest Soil	MLFVLGIVARLAAVLGMVFILTKTLPSMPNKVCRFFLLFILCVPWNFVVNYFDVRLLGYHEMDWTGASIIALLFASFGTFWLPQSHNSNTP
Ga0307475_111090132	3300031754	Hardwood Forest Soil	KTMLFVLGIVARLAAVLGMVFILTKTLPSMPNKVCRFFLLFILCVPWNFVVNYFDVRLLGYHEMDWTGASIIALLFASFGTFWLPQSHNSNTP
Ga0307475_112342791	3300031754	Hardwood Forest Soil	MVTVLGIVARVAIAVAIAFILSETVPRMANKMCRFVFLFVLFLPVNFGVNYVNVQLLGYHKMGWTGASIIALLVALWGTFLYPPQPHNSN
Ga0307478_101903633	3300031823	Hardwood Forest Soil	MLSVLGIVASLALLVGMAFILGKTVPSMPDKVCRFIFLFVLCVPFSFVVDWVNVWAFGYHKMGWTGALIGALLPASYGTFLPPQPHNSNKP
Ga0307478_112873151	3300031823	Hardwood Forest Soil	MLPVLGIVATLAIVVGFAFILGRTVPSIPNKVSRFMFLFLLFIPLDRVINYVNVWAFGYHEGGGWTWTLIIALVAATYATFLPPRPHNSDTP
Ga0308175_1000491671	3300031938	Soil	MLISVVVEVALFLGAAFILSTVPSMPTKVSRFVFLFVLCMPLVFVINYLDVRLLGYPEMGLTAASIIGLLSAAFGTFLPRQRHNSNPP
Ga0308176_116124111	3300031996	Soil	FLFVLCVPLVFVINYLDVRLLGYPEMGWTAASIIGLLSAAFGTFLPLQRHNSNPP
Ga0307470_109248681	3300032174	Hardwood Forest Soil	KTMLGVLSAIVARCAVLLGLGFVLSKTLPSMPNKVCRFVLLFVLFVLFGFLTNYVNVRFLDYHKMGWTGASVTALLLATIGTFWPPQPDKSNTP
Ga0335070_100027336	3300032829	Soil	MLSIFSSVVAEIAIVLGVAVILSKTVPRMPNKVCRFVLLFVLWVPVTSVVNYVNIRTLGYHKMGWTAASIIAVLLATCGTFWPPQPHNSNTP
Ga0335069_108611551	3300032893	Soil	MLTILGMVARLSVLVGAAFIFSKTVASMSNKVFRFVVLFVLCVPLNFVINYVNIWAFGYHKMGWNGALIIALVFATWGTFLGPQPHNSNMPQPASGTKNSSL
Ga0335074_100509111	3300032895	Soil	MLPVLGMVARFAVLVGAAFILGKTVTSMHNKVSRFFFLFVLCVPLNFLINYVDVQLLGYHKMGWTGASIIALIFATWGTFLGPQPHKPQSP
Ga0335074_107646332	3300032895	Soil	MLFILGIVASFAIVVGMAFILGKTVPCMPNKVSRFVFSFILCVPFSLVDNCVNVWAFGYHKMSWTGALIIALLPAACGTFLPTHGSNKP
Ga0310810_113187041	3300033412	Soil	MLPVLGIVARFGILGGMAFIFSKTVPSMPNTVCRFVFLFALCVPLNFVVNYFDVRLLGYHKMSWTGAIIIALLFTAYGMFLLPQPHNPN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062006

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences