Metagenome / Metatranscriptome Family F061581

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061581
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	57 residues
Representative Sequence	MQPQIMASLGTFFFVIYLACVIAIIIYVLRLLGRFVSAHERVASALEIVARKLKDDGKP
Number of Associated Samples	104
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.40 %
% of genes near scaffold ends (potentially truncated)	17.56 %
% of genes from short scaffolds (< 2000 bps)	77.10 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.382 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (9.160 % of family members)
Environment Ontology (ENVO)	Unclassified (35.115 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (32.824 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.07% β-sheet: 0.00% Coil/Unstructured: 37.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF00482	T2SSF	5.34
PF01402	RHH_1	1.53
PF00589	Phage_integrase	1.53
PF09413	DUF2007	1.53
PF14317	YcxB	1.53
PF07589	PEP-CTERM	1.53
PF13495	Phage_int_SAM_4	1.53
PF00072	Response_reg	0.76
PF03976	PPK2	0.76
PF13306	LRR_5	0.76
PF03652	RuvX	0.76
PF03091	CutA1	0.76
PF01145	Band_7	0.76
PF08544	GHMP_kinases_C	0.76
PF00583	Acetyltransf_1	0.76
PF13630	SdpI	0.76
PF03572	Peptidase_S41	0.76
PF00889	EF_TS	0.76
PF00588	SpoU_methylase	0.76
PF02371	Transposase_20	0.76
PF00271	Helicase_C	0.76
PF01595	CNNM	0.76
PF06925	MGDG_synth	0.76
PF02911	Formyl_trans_C	0.76
PF13751	DDE_Tnp_1_6	0.76
PF04679	DNA_ligase_A_C	0.76
PF10282	Lactonase	0.76
PF00437	T2SSE	0.76
PF05957	DUF883	0.76
PF01986	DUF123	0.76
PF02518	HATPase_c	0.76
PF00753	Lactamase_B	0.76
PF00590	TP_methylase	0.76
PF02325	YGGT	0.76
PF01103	Omp85	0.76
PF07690	MFS_1	0.76
PF01327	Pep_deformylase	0.76
PF12663	DUF3788	0.76
PF05157	T2SSE_N	0.76
PF06182	ABC2_membrane_6	0.76
PF07508	Recombinase	0.76
PF01663	Phosphodiest	0.76
PF01311	Bac_export_1	0.76
PF13365	Trypsin_2	0.76
PF13443	HTH_26	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain	Translation, ribosomal structure and biogenesis [J]	0.76
COG0223	Methionyl-tRNA formyltransferase	Translation, ribosomal structure and biogenesis [J]	0.76
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	0.76
COG0264	Translation elongation factor EF-Ts	Translation, ribosomal structure and biogenesis [J]	0.76
COG0565	tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase	Translation, ribosomal structure and biogenesis [J]	0.76
COG0566	tRNA G18 (ribose-2'-O)-methylase SpoU	Translation, ribosomal structure and biogenesis [J]	0.76
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	0.76
COG0762	Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG0816	YqgF/RuvX protein, pre-16S rRNA maturation RNase/Holliday junction resolvase/anti-termination factor	Translation, ribosomal structure and biogenesis [J]	0.76
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	0.76
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.76
COG1833	Uri superfamily endonuclease	General function prediction only [R]	0.76
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.76
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.76
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.76
COG3694	ABC-type uncharacterized transport system, permease component	General function prediction only [R]	0.76
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.38 %
Unclassified	root	N/A	49.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.38 %
Unclassified	root	N/A	49.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.38 %
Unclassified	root	N/A	49.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	26.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.58 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.53 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.53 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	25.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.53 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.53 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.76 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	9.16 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	8.40 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.53 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.53 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.76 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.76 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.76 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	9.16 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	8.40 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	1.53 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1.53 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Spirulinales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Spirulinales	0.76 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.76 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	9.16 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	6.87 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	1.53 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1.53 %
Spirulinaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Spirulinales → Spirulinaceae	0.76 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	0.76 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.76 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	9.16 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	4.58 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	2.29 %
Opitutus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus	1.53 %
Citrifermentans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans	0.76 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.76 %
Geomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas	0.76 %
Spirulina	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Spirulinales → Spirulinaceae → Spirulina	0.76 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	0.76 %
Occallatibacter savannae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	9.16 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	4.58 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	2.29 %
unclassified Opitutus	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus	1.53 %
unclassified Geomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas → unclassified Geomonas	0.76 %
unclassified Spirulina	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Spirulinales → Spirulinaceae → Spirulina → unclassified Spirulina	0.76 %
Citrifermentans bemidjiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans → Citrifermentans bemidjiense	0.76 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.76 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	0.76 %
Occallatibacter savannae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	9.16 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	2.29 %
Geomonas sp. Red32	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas → unclassified Geomonas → Geomonas sp. Red32	0.76 %
Opitutus sp. GAS368	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	0.76 %
Opitutus sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp.	0.76 %
Spirulina sp. SIO3F2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Spirulinales → Spirulinaceae → Spirulina → unclassified Spirulina → Spirulina sp. SIO3F2	0.76 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	0.76 %
Citrifermentans bemidjiense Bem	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans → Citrifermentans bemidjiense → Citrifermentans bemidjiense Bem	0.76 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.76 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	0.76 %
Occallatibacter savannae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_104620517	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300004152\|Ga0062386_100552305	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300004806\|Ga0007854_10019983	All Organisms → cellular organisms → Bacteria	3632	Open in IMG/M
3300005591\|Ga0070761_10618863	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	674	Open in IMG/M
3300005827\|Ga0074478_1919289	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1306	Open in IMG/M
3300005829\|Ga0074479_10852631	All Organisms → cellular organisms → Bacteria	1873	Open in IMG/M
3300006052\|Ga0075029_100127501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1549	Open in IMG/M
3300006052\|Ga0075029_100461926	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300006104\|Ga0007882_10140132	Not Available	862	Open in IMG/M
3300006950\|Ga0075524_10370536	Not Available	631	Open in IMG/M
3300009029\|Ga0066793_10176393	Not Available	1245	Open in IMG/M
3300009161\|Ga0114966_10094049	Not Available	2027	Open in IMG/M
3300009502\|Ga0114951_10024017	All Organisms → cellular organisms → Bacteria	4035	Open in IMG/M
3300009502\|Ga0114951_10163927	Not Available	1214	Open in IMG/M
3300009502\|Ga0114951_10352793	Not Available	743	Open in IMG/M
3300009502\|Ga0114951_10467152	Not Available	620	Open in IMG/M
3300009506\|Ga0118657_11598021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Spirulinales → Spirulinaceae → Spirulina → unclassified Spirulina → Spirulina sp. SIO3F2	766	Open in IMG/M
3300009522\|Ga0116218_1458656	Not Available	568	Open in IMG/M
3300009624\|Ga0116105_1069984	Not Available	836	Open in IMG/M
3300010361\|Ga0126378_11924033	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300012411\|Ga0153880_1390358	Not Available	558	Open in IMG/M
3300013105\|Ga0157369_12573069	Not Available	515	Open in IMG/M
3300013296\|Ga0157374_12202339	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300014160\|Ga0181517_10018946	Not Available	4829	Open in IMG/M
3300014161\|Ga0181529_10528559	Not Available	622	Open in IMG/M
3300014167\|Ga0181528_10778932	Not Available	537	Open in IMG/M
3300014168\|Ga0181534_10522354	Not Available	674	Open in IMG/M
3300014492\|Ga0182013_10102682	Not Available	1926	Open in IMG/M
3300014493\|Ga0182016_10074117	All Organisms → cellular organisms → Bacteria	2510	Open in IMG/M
3300014494\|Ga0182017_10019872	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4651	Open in IMG/M
3300014495\|Ga0182015_10309940	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1031	Open in IMG/M
3300014498\|Ga0182019_10486486	Not Available	853	Open in IMG/M
3300014498\|Ga0182019_10740285	Not Available	699	Open in IMG/M
3300014499\|Ga0182012_10730413	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	630	Open in IMG/M
3300014502\|Ga0182021_10508565	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1437	Open in IMG/M
3300014657\|Ga0181522_10031833	Not Available	2916	Open in IMG/M
3300014838\|Ga0182030_10528128	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1167	Open in IMG/M
3300014839\|Ga0182027_10565279	Not Available	1229	Open in IMG/M
3300014839\|Ga0182027_10616617	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	1163	Open in IMG/M
3300014839\|Ga0182027_11884407	Not Available	576	Open in IMG/M
3300017821\|Ga0187812_1079971	Not Available	1078	Open in IMG/M
3300017929\|Ga0187849_1006202	Not Available	9205	Open in IMG/M
3300017931\|Ga0187877_1370305	Not Available	542	Open in IMG/M
3300017941\|Ga0187850_10139499	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300017941\|Ga0187850_10156493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1066	Open in IMG/M
3300017988\|Ga0181520_10012642	All Organisms → cellular organisms → Bacteria	10806	Open in IMG/M
3300017988\|Ga0181520_10391018	Not Available	1011	Open in IMG/M
3300017988\|Ga0181520_10710708	Not Available	685	Open in IMG/M
3300018005\|Ga0187878_1083936	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Citrifermentans → Citrifermentans bemidjiense → Citrifermentans bemidjiense Bem	1335	Open in IMG/M
3300018021\|Ga0187882_1336893	Not Available	575	Open in IMG/M
3300018034\|Ga0187863_10334938	Not Available	842	Open in IMG/M
3300021070\|Ga0194056_10034371	All Organisms → cellular organisms → Bacteria → Nitrospirae	1971	Open in IMG/M
3300021404\|Ga0210389_11107470	Not Available	612	Open in IMG/M
3300022524\|Ga0224534_1011889	Not Available	2635	Open in IMG/M
3300022555\|Ga0212088_10048826	All Organisms → cellular organisms → Bacteria	4587	Open in IMG/M
3300022555\|Ga0212088_10176064	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp.	1749	Open in IMG/M
3300022555\|Ga0212088_10202987	Not Available	1569	Open in IMG/M
3300022555\|Ga0212088_10800143	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	544	Open in IMG/M
3300023254\|Ga0224524_1095606	Not Available	514	Open in IMG/M
3300024233\|Ga0224521_1049936	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300024233\|Ga0224521_1131898	Not Available	530	Open in IMG/M
3300024295\|Ga0224556_1065395	Not Available	893	Open in IMG/M
3300025162\|Ga0209083_1058243	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1634	Open in IMG/M
3300025428\|Ga0208506_1029720	Not Available	980	Open in IMG/M
3300025499\|Ga0207931_1057770	Not Available	763	Open in IMG/M
3300025500\|Ga0208686_1126595	Not Available	526	Open in IMG/M
3300025548\|Ga0208716_1028373	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300025581\|Ga0208355_1002948	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6894	Open in IMG/M
3300025625\|Ga0208219_1015542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2335	Open in IMG/M
3300025648\|Ga0208507_1207773	Not Available	506	Open in IMG/M
3300025679\|Ga0207933_1009953	All Organisms → cellular organisms → Bacteria	4612	Open in IMG/M
3300025716\|Ga0209746_1024931	All Organisms → cellular organisms → Bacteria → Proteobacteria	2237	Open in IMG/M
3300025725\|Ga0209638_1131439	Not Available	834	Open in IMG/M
3300025865\|Ga0209226_10180041	Not Available	935	Open in IMG/M
3300025865\|Ga0209226_10408586	Not Available	547	Open in IMG/M
3300025888\|Ga0209540_10375889	Not Available	783	Open in IMG/M
3300027815\|Ga0209726_10429735	Not Available	608	Open in IMG/M
3300027854\|Ga0209517_10000108	All Organisms → cellular organisms → Bacteria	136151	Open in IMG/M
3300027898\|Ga0209067_10714146	Not Available	581	Open in IMG/M
3300028394\|Ga0304730_1222801	Not Available	698	Open in IMG/M
3300028552\|Ga0302149_1086163	Not Available	810	Open in IMG/M
3300028556\|Ga0265337_1026397	Not Available	1760	Open in IMG/M
3300028565\|Ga0302145_10258498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300028666\|Ga0265336_10096743	Not Available	880	Open in IMG/M
3300028745\|Ga0302267_10000384	All Organisms → cellular organisms → Bacteria	58748	Open in IMG/M
3300029911\|Ga0311361_11015968	Not Available	692	Open in IMG/M
3300029914\|Ga0311359_10860033	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300029922\|Ga0311363_11331124	Not Available	592	Open in IMG/M
3300029922\|Ga0311363_11459892	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	552	Open in IMG/M
3300030019\|Ga0311348_10592804	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	827	Open in IMG/M
3300030045\|Ga0302282_1254562	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300030049\|Ga0302191_10018168	All Organisms → cellular organisms → Bacteria	3562	Open in IMG/M
3300030114\|Ga0311333_10129235	All Organisms → cellular organisms → Bacteria → PVC group	1912	Open in IMG/M
3300030114\|Ga0311333_11250229	Not Available	635	Open in IMG/M
3300030294\|Ga0311349_10963183	Not Available	801	Open in IMG/M
3300030916\|Ga0075386_11008638	Not Available	575	Open in IMG/M
3300031232\|Ga0302323_101545919	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	748	Open in IMG/M
3300031235\|Ga0265330_10505673	Not Available	514	Open in IMG/M
3300031247\|Ga0265340_10358707	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	644	Open in IMG/M
3300031261\|Ga0302140_10761495	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	697	Open in IMG/M
3300031521\|Ga0311364_10592400	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1119	Open in IMG/M
3300031524\|Ga0302320_10006294	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	26381	Open in IMG/M
3300031524\|Ga0302320_10530786	Not Available	1409	Open in IMG/M
3300031524\|Ga0302320_12179643	Not Available	513	Open in IMG/M
3300031672\|Ga0307373_10324553	Not Available	956	Open in IMG/M
3300031726\|Ga0302321_100410032	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1478	Open in IMG/M
3300031726\|Ga0302321_103596146	Not Available	504	Open in IMG/M
3300031726\|Ga0302321_103620906	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300031788\|Ga0302319_10498712	Not Available	1308	Open in IMG/M
3300031813\|Ga0316217_10012447	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	7015	Open in IMG/M
3300032118\|Ga0315277_10001075	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	40699	Open in IMG/M
3300032342\|Ga0315286_11885335	Not Available	559	Open in IMG/M
3300032770\|Ga0335085_10002919	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	30750	Open in IMG/M
3300032770\|Ga0335085_10008494	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas → unclassified Geomonas → Geomonas sp. Red32	15654	Open in IMG/M
3300032770\|Ga0335085_10284730	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1968	Open in IMG/M
3300032770\|Ga0335085_10344162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1750	Open in IMG/M
3300032770\|Ga0335085_10684988	Not Available	1142	Open in IMG/M
3300032805\|Ga0335078_10035770	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7372	Open in IMG/M
3300032805\|Ga0335078_11285964	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	836	Open in IMG/M
3300032829\|Ga0335070_10463729	Not Available	1204	Open in IMG/M
3300032892\|Ga0335081_10073802	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5200	Open in IMG/M
3300032893\|Ga0335069_11381268	Not Available	763	Open in IMG/M
3300032954\|Ga0335083_10001212	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	36047	Open in IMG/M
3300033158\|Ga0335077_10611585	Not Available	1136	Open in IMG/M
3300033402\|Ga0326728_10021050	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	12326	Open in IMG/M
3300033405\|Ga0326727_10022247	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	12283	Open in IMG/M
3300034070\|Ga0334822_004119	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4270	Open in IMG/M
3300034091\|Ga0326724_0024341	All Organisms → cellular organisms → Bacteria → Proteobacteria	5107	Open in IMG/M
3300034125\|Ga0370484_0065216	Not Available	920	Open in IMG/M
3300034282\|Ga0370492_0206976	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	799	Open in IMG/M
3300034282\|Ga0370492_0322786	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	627	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.42%
Host-Associated	Host-Associated	4.58%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.54%
Aquatic	Environmental → Aquatic	35.88%
Plants	Host-Associated → Plants	4.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	35.11%
Freshwater	Environmental → Aquatic → Freshwater	30.53%
Peat	Environmental → Terrestrial → Peat	24.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.58%
Sediment	Environmental → Aquatic → Sediment	3.82%
Marine	Environmental → Aquatic → Marine	1.53%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	24.43%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	21.37%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	12.21%
Lake	Environmental → Aquatic → Freshwater → Lake	10.69%
Lentic	Environmental → Aquatic → Freshwater → Lentic	3.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.05%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.53%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.76%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.76%
Loam	Environmental → Terrestrial → Soil → Loam	0.76%
Clay	Environmental → Terrestrial → Soil → Clay	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	24.43%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.21%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.45%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	9.92%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	9.16%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	8.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.82%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	3.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.05%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.29%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.53%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.53%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.53%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.76%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.76%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.76%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	9.16%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	9.16%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	8.40%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	8.40%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.11%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.34%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	5.34%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	4.58%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.82%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	3.05%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	3.05%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.05%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	3.05%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.29%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.29%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.29%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.53%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.53%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.53%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.53%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.53%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.76%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.76%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.76%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.76%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.76%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.76%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.76%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.76%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004806	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005827	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006104	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental	Open in IMG/M
3300009502	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG	Environmental	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300012411	Freshwater microbial communities from Lake Alinen Mustaj?rvi, Finland - AM7a metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300021070	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-13m	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300023254	Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T75	Environmental	Open in IMG/M
3300024233	Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T0	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025162	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG (SPAdes)	Environmental	Open in IMG/M
3300025428	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jul08 (SPAdes)	Environmental	Open in IMG/M
3300025499	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025500	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)	Environmental	Open in IMG/M
3300025548	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025581	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025648	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1 (SPAdes)	Environmental	Open in IMG/M
3300025679	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025716	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211 (SPAdes)	Environmental	Open in IMG/M
3300025725	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 (SPAdes)	Environmental	Open in IMG/M
3300025865	Arctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212 (SPAdes)	Environmental	Open in IMG/M
3300025888	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028394	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)	Environmental	Open in IMG/M
3300028552	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1	Environmental	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028565	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3	Environmental	Open in IMG/M
3300028666	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG	Host-Associated	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030019	II_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030045	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3	Environmental	Open in IMG/M
3300030049	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_1	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031672	Soil microbial communities from Risofladan, Vaasa, Finland - OX-2	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031813	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300034070	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-M	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1046205172	3300001213	Wetland	MAALPGLLFVVYVAGVIAVVIYVLRLLGRFVSAHERVASSLDIIARKMRDDAK
Ga0062386_1005523052	3300004152	Bog Forest Soil	MASLGTFFFFIYLACVIAVIICVLRLLGRFVSAHERVANALEVVARKMKDDGKP*
Ga0007854_100199833	3300004806	Freshwater	MQPQILGAIFGYVYLVCVIGIILCLIRLLYRFVSAQERVASALEIVARKLKDDAKP*
Ga0070761_106188632	3300005591	Soil	MGTLTGLFALVYVVCVIAITIYVLRLLGRFVSAHERVAGALEIVARKLKDDCKP*
Ga0074478_19192891	3300005827	Sediment (Intertidal)	MQPQAMASLGGLFALVYLACVIAVIIYVLRLLGRFVNAQERTAGALEHIARKMRDDGKA*
Ga0074479_108526312	3300005829	Sediment (Intertidal)	MNITPILAAFAFDGLFLLAYICCVLGVIIFVLSLLSRFVIAHERVASSLDIIARKMKDDAKP*
Ga0075029_1001275014	3300006052	Watersheds	MQPQTMTSLGGLFFVVYFICVIAIIIYVLRLLGRFVSSHEKMAASLDTIARKLKDEAKP*
Ga0075029_1004619262	3300006052	Watersheds	MQALGGFFAVVYIACVIAVIIYGLRLLGRFVSALERAANALEVVARKLRDEGK*
Ga0007882_101401321	3300006104	Freshwater	MGAQIMAGVGGLFFLLVYLACVIGIITCLIRLLYRLTSAHERVAAALEIVARKMKDDGKP
Ga0075524_103705362	3300006950	Arctic Peat Soil	MQPQIMAGVGGLFFLVYIACVIGIIFCLIRLLYRFVSAHERVASALEIVARKMKDEGKP*
Ga0066793_101763931	3300009029	Prmafrost Soil	MQPQIMAGVGGLFFLVYIACVIGIIICLIRLLYRFVSAHERVASALEIVARKMKDDGKP*
Ga0114966_100940492	3300009161	Freshwater Lake	MASLGGFFVVVYLTCVVAIIIYVLRLLGRFVSAHERVAGALEIIARKEKDDAKP*
Ga0114951_100240173	3300009502	Freshwater	MGALSGVFLLVYAACVIAIIIYVLRLMGRFVGAHERVAGALEIISRKLRDDCK*
Ga0114951_101639272	3300009502	Freshwater	MQPQIMASLGTFFVFIYLACVVAVIIYVLRLLGRFVSAHERTANALEIVARKLKDDGKP*
Ga0114951_103527932	3300009502	Freshwater	MIGLDSLFVLAYVGCIVAIIIYLLRLAGRFVSAHERLASSLETVARKLRDDGK
Ga0114951_104671521	3300009502	Freshwater	MSALAGLLVLVYFGCAVTIIIYAFRLLGRFVSAHERVAGALETIARKLRDDGKP*
Ga0118657_115980212	3300009506	Mangrove Sediment	MASLGGFFLLVYLACVVGVIIFALTLLWRFVTAHERVAASLEVIARKLRDEAKP*
Ga0116218_14586561	3300009522	Peatlands Soil	ASLGGLFVLAYLACVIAVIIFVLRLLWRFVCAHERLAGALDIISRKMRDDARP*
Ga0116105_10699841	3300009624	Peatland	MQPQIKAGVGEFFFLVHIVCVIAIIIYVLRLLGRFVSAHDRVASALEIVARKLKDDGKP*
Ga0126378_119240332	3300010361	Tropical Forest Soil	EPQTMASIGGLFALVYLACVIAIVILVLRLLWRFVCAHERLAGALDVISRKMRDDAKS*
Ga0153880_13903582	3300012411	Freshwater Sediment	MQPQNMATPLISGLVMLAYVACVIGVIIYVLRLLGRFICAQERVASALEIVARKMRDDGKS*
Ga0157369_125730691	3300013105	Corn Rhizosphere	MQPQTMAGIGEFFFVLYIVCVITLIIYFIRLVGRFVGAHERMAASLDIIAQKMKDEARP*
Ga0157374_122023392	3300013296	Miscanthus Rhizosphere	GAAASIGTLFVLCYIVCIGAIIVYAFKLVGRFVDAQERVAGALESIAQKLRKEEAR*
Ga0181517_100189463	3300014160	Bog	MTGSLFAGIFGLIYLACVIGIIICLIRLLYRLVTAQERVASSLDIIARKMKDDAKP*
Ga0181529_105285592	3300014161	Bog	MFTPMASLGGLFVLVYFACIIAVIIYLLRLLGRFVSAHERMAASLDIIARKLKDEAKP*
Ga0181528_107789321	3300014167	Bog	MVGLGSIFALIYFACVIGIIIFLIRLLCRFVSAHERVASALEIVARKLKDDGKP*
Ga0181534_105223541	3300014168	Bog	MIGTLGGLFALIYVICIIAIAIYVLRLLDRFVSAHERVANALETAARKLRDDGKPDH*
Ga0182013_101026822	3300014492	Bog	MVSLGGLFVAIYLACVIAIIIYVLRLLGRLVSAHERVAGALEVMARKQQDNDKTENP*
Ga0182016_100741172	3300014493	Bog	MAGAGAFFVLVYILCVLGIIFLLIRLPYRFVVAQERMAAALEMVARKLKDDAKP*
Ga0182017_100198726	3300014494	Fen	MQPQIMAGLGGIFALVYLACVVAIIIYIIRLLSRFVSAHERVASALEVVARKLKDDGKP*
Ga0182015_103099402	3300014495	Palsa	MASLGGFFVLVYLACVIGIIIYVLSLLGRFVSALERVAGALEIIARKQKDDAKPG*
Ga0182019_104864862	3300014498	Fen	MQPQIMATLGTFFAFIYLACVVAVIIYVLRLLGRFVGAHERVASALEIVARKMKDDGKP*
Ga0182019_107402852	3300014498	Fen	MQPQFIAPTLGGLFVLVYLACVVAVIIYVLRLLGRFVSAHERVASALEIVARKLKDDGKPRDSI*
Ga0182012_107304131	3300014499	Bog	MQPQIMTSLGTFAFIMYFVCVIAIIISILRLLGRFVGAQEKMAASLGIIARKLKDETKP*
Ga0182021_105085653	3300014502	Fen	MAGLGGIFALVYLACVVAIIIYIIRLLSRFVSAHERVASALEVVARKLKDDGKP*
Ga0181522_100318333	3300014657	Bog	MHTQLLNAPTLTLLFYFAYIICVIGILIYILRLLVRFVSAQERVASALEIVARKMKDDAKP*
Ga0182030_105281282	3300014838	Bog	MQPQIMEGLLGGIFGLVYLACVIGIIFCLIRLLYRFVGAHERVASALEIVARKMKDDGKP
Ga0182027_105652792	3300014839	Fen	MAGVGGLFFVLVYLVCVIAVIIYVLRLLGRLVSAHERVASSLDIIARKMKDDAKP*
Ga0182027_106166172	3300014839	Fen	MQPQIMASLGTFFVFIYLACVVAVIIYVLRLLGRFVSAHERFASALEIVARKMKDDGKP*
Ga0182027_118844072	3300014839	Fen	MNITPILAVFAFDGLFLLAYICCVLGVIIFVLSLLSRFVKAHERVASSLDIIARKMKDDAKP*
Ga0187812_10799711	3300017821	Freshwater Sediment	MQPQIMGLFGGLFALVYLACVIAVIILLIRLFSRLVSASEKIAGSLDVIARKMRDDAKP
Ga0187849_100620210	3300017929	Peatland	MPQQTMWTLFPGLFVLAYAACVIAVIIYVLRLLGRFVSAHERVASSLDIIARKMRDDNKP
Ga0187877_13703051	3300017931	Peatland	TMWTLFPGLFVLAYAACVIAVIIYVLRLLGRFVSAHERVASSLDIIARKMRDDNKP
Ga0187850_101394991	3300017941	Peatland	MPQQTMWTLFPGLFVLAYAACVIAVIIYVLRLLGRFVSAHERVASSLDIIARK
Ga0187850_101564931	3300017941	Peatland	MAPAPTSPAASSLAGLFIVVYGGCVIAVIVYVLRLLGRFVTAHERVASALEIVARKSEDGGKQL
Ga0181520_100126429	3300017988	Bog	MTGSLFAGIFGLIYLACVIGIIICLIRLLYRLVTAQERVASSLDIIARKMKDDAKP
Ga0181520_103910181	3300017988	Bog	MQPQTMTSLGGLFFVVYFICVIAIIIYVLRLLGRFVSSHEKMAASLDTIARKLKDEAKP
Ga0181520_107107081	3300017988	Bog	MQPQVMAGIGGLLFVMVYFICIVAIIIYVLSLLGRFVSAHERMAASLDIIARKLKDEAKP
Ga0187878_10839361	3300018005	Peatland	PAASSLAGLFIVVYVGCVVAVIVYVLRLLGRFVRAHERVASALEIVARKSQDGDKQL
Ga0187882_13368932	3300018021	Peatland	GLFVLAYAACVIAVIIYVLRLLGRFVSAHERVASSLDIIARKMRDDNKP
Ga0187863_103349382	3300018034	Peatland	MFPMASLGGFFVLVYLACVIGIIIYVLSLLGRFVSALERVAGALEIIARKQKDDAKPG
Ga0194056_100343711	3300021070	Anoxic Zone Freshwater	MQPPIMSALAGLLVLVYFGCAVTIIIYAFRLLGRFVSAHERVAGALETIARKLRDDGKP
Ga0210389_111074702	3300021404	Soil	MQPHDLTEIGGLLFVALYIACIIGIIIYVLRMLGKFVSAHEKMAASLDVIARKLKDESRS
Ga0224534_10118893	3300022524	Soil	MQPQIMASLGSFFVLIYLACVVAVIIYVLRLLGRFVSAHERVASSLDIIARKMKDDAKP
Ga0212088_100488263	3300022555	Freshwater Lake Hypolimnion	MSALAGLLVLVYFGCAVTIIIYAFRLLGRFVSAHERVAGALETIARKLRDDGKP
Ga0212088_101760642	3300022555	Freshwater Lake Hypolimnion	MQPQTTEVSGLFFVLVYIACVIGIILCLIRLLYRFVGAHERVASALETVARKLKDDSKP
Ga0212088_102029872	3300022555	Freshwater Lake Hypolimnion	MQPQIMASLGTFFVFIYLACVVAVIIYVLRLLGRFVSAHERTANALEIVARKLKDDGKP
Ga0212088_108001432	3300022555	Freshwater Lake Hypolimnion	MMETLTGLFGLVYVGCVIAIIIYLLRSLGRLVSAHERVAGSLEIIARKLRDDAQP
Ga0224524_10956061	3300023254	Soil	MESLGTFFAILYVTCIIAVIIYVLRLLSRFVRAHERVAKSIEIIANKMKDETEP
Ga0224521_10499363	3300024233	Soil	MQPQIMAGVGGLFSLAYIACVIGIIFCLIRLLYRFVSAHERVASSLDIIARKMKDDGKP
Ga0224521_11318982	3300024233	Soil	MQQQIMWSLFPGLFVLAYAACVIAVIVYVLRLLGRFVTAHERVASSLDIIARKMRDDGKP
Ga0224556_10653952	3300024295	Soil	MQPQIKAGVGEFFFLVHIVCVIAIIIYVLRLLGRFVSAHDRVASALEIVARKLKDDGKP
Ga0209083_10582434	3300025162	Freshwater	MQPQNMATPLISGLVMLAYVACVIGVIIYVLRLLGRFICAQERVASALEIVARKMRDDGK
Ga0208506_10297202	3300025428	Freshwater	MQPQILGAIFGYVYLVCVIGIILCLIRLLYRFVSAQERVASALEIVARKLKDDAKP
Ga0207931_10577702	3300025499	Arctic Peat Soil	MGTLSGLFVLVYVVCVIAVIIYVLTLLGRFVSAHERVASALEIVARKMRDDGKP
Ga0208686_11265951	3300025500	Peatland	MPQQTMWTLFPGLFVLAYAACVIAVIIYVLRLLGRFVSAHERVASSLDIIARKMRDDNK
Ga0208716_10283731	3300025548	Arctic Peat Soil	SLGGLFVLVYVVCVIAIIIYALRLLGRFVSAHERVAGALETIARKLREDGKG
Ga0208355_10029484	3300025581	Arctic Peat Soil	MLQQTIAALFPGLFLLAYAACVIAVIIYVLRLCGRFVRAHERAANALEIVARKMRDDCKP
Ga0208219_10155424	3300025625	Arctic Peat Soil	QIMQPQILGAIFGYVYLVCVIGIILCLIRLLYRFVSAHERVASALEIVARKLKDDDKP
Ga0208507_12077731	3300025648	Freshwater	MAGVGGLFFLLVYLACVIGIITCLIRLLYRLTSAHERVAAALEIVARKMKDDGKP
Ga0207933_10099533	3300025679	Arctic Peat Soil	MQPQILGAIFGYVYLVCVIGIILCLIRLLYRFVSAHERVASALEIVARKLKDDDKP
Ga0209746_10249311	3300025716	Arctic Peat Soil	MQPQIMASLGTFFVFIYLACVIAVIIYVLRLLGRFVSAHERVASSLDIIARKMKDEAKP
Ga0209638_11314392	3300025725	Arctic Peat Soil	MAGLGGIFALVYLACVIGIIICLIRLLYRFVSAHERVASALEIVARKMKDDAKP
Ga0209226_101800412	3300025865	Arctic Peat Soil	MQPQAMASLGGLFVLVYVVCVIAIIIYALRLLGRFVNAHERVAGALETIARKLREDGKG
Ga0209226_104085861	3300025865	Arctic Peat Soil	NQIMQPQIMASLGTFFVFIYLACVIAVIIYVLRLLGRFVSAHERVASSLDIIARKMKDEAKP
Ga0209540_103758892	3300025888	Arctic Peat Soil	MASLGGLFVLVYVVCVIAIIIYALRLLGRFVSAHERVAGALETIARKLREDGKG
Ga0209726_104297352	3300027815	Groundwater	MASFGGFFVLVYFVCVVVVIIYVLRLLGRFVNAHERVAGALETIARKLREDGKL
Ga0209517_10000108109	3300027854	Peatlands Soil	MQPNIMASLGGLFVLAYLACVIAVIIFVLRLLWRFVCAHERLAGALDIISRKMRDDARP
Ga0209067_107141462	3300027898	Watersheds	MQPLTMESLGGLFFILYFICVIAIVIYVLRLLGRFVCAHEKMAASLDTIARKLKDEAKP
Ga0304730_12228012	3300028394	Freshwater Lake	MASLGGFFVVVYLTCVVAIIIYVLRLLGRFVSAHERVAGALEIIARKEKDDAKP
Ga0302149_10861631	3300028552	Bog	MYPMASLGGLFVLLYLACVIAVIIYVLRLLGRLVSAHERVASALEVIARKQEDSKGDKP
Ga0265337_10263972	3300028556	Rhizosphere	MQPHFMESLGGLFALVYFICVIAIIIYLIRLLGRFVSAHERVASALEILARKLKDDAKP
Ga0302145_102584981	3300028565	Bog	MYPMASLGGLFVLLYLACVIAVIIYVLRLLGRLVSAHERVAGALEVIARKQEDNKGDKP
Ga0265336_100967433	3300028666	Rhizosphere	MESLGGLFALVYFICVIAIIIYLIRLLGRFVRAHERVASALEILARKLKDDAKP
Ga0302267_100003846	3300028745	Bog	MLFYLACVIGIIILLLRLLWRFVTAHEKMAAALDTIARKLKDEAKP
Ga0311361_110159682	3300029911	Bog	MQPQTMAGVGGVVGGLFFLVYIACVIGIVICLIRLLYRFVSAHERAANALEIVARKMKDDGKP
Ga0311359_108600332	3300029914	Bog	IQPQLMAGAGAFFVLVYILCVLGIIFLLIRLLYRFVVAQERMAAALEMVARKLKDDAKP
Ga0311363_113311242	3300029922	Fen	MVSLGGLFVAIYLACVIAIIIYVLRLLGRLVSAHERVAGALEVMARKQQDNDKTENP
Ga0311363_114598922	3300029922	Fen	MEPHIMASLSTFFVLIYFACLVAILIYLLRLLGRFVRSFERIAGALETVARKLKEDGKP
Ga0311348_105928042	3300030019	Fen	MQPQIMASLGGLFALVYLACVVGVVIYVLRLLGRFVSAHERVASSLDIIARKMRDDAKP
Ga0302282_12545621	3300030045	Fen	MAGAGAFFVLVYILCVLGIIFLLIRLPYRFVVAQERMAAALEMVARKLKDDAKP
Ga0302191_100181687	3300030049	Bog	LFYLACVIGIIILLLRLLWRFVTAHEKMAAALDTIARKLKDEAKP
Ga0311333_101292351	3300030114	Fen	FKPNPKQIMQPQFIAPTLGGLFVLVYLACVVAVIIYVLRLLGRFVSAHERVASALEIVARKLKDDGKPRDSI
Ga0311333_112502291	3300030114	Fen	MQPQIMGTLSGLFLMVYVACVIAVIIYVLRLLGRFVGAHERVASALEMVARKMRDDGKL
Ga0311349_109631831	3300030294	Fen	MQPQIMAGVGGLFFLVYIACVIGIIICLIRLLYRFVSAHERVASALEIVARKMKDDAKP
Ga0075386_110086381	3300030916	Soil	QPQIMTGLGSIFALIYLACVIGIIFCLIRLLYRFVSAQERVASALEIVARKLKDDGKP
Ga0302323_1015459192	3300031232	Fen	MQPQIMAGLGGIFALVYLACVIGIIVCLIRLLYRFVSAHERVASALEMVARKMQDDAKP
Ga0265330_105056732	3300031235	Rhizosphere	QIMEGVGGLFFLVYIACVIGIIICLIRLLYRFVSAHERIASSLDVVARKMRDDCKP
Ga0265340_103587071	3300031247	Rhizosphere	HTNQPPNQIIQPQIMESIGGIFAIIYLVCVVAVIIYVLRLLGRFVSAHERVASSLDIIARKMRDDAKP
Ga0302140_107614952	3300031261	Bog	MYPMASLGGLFVLLYLACVIAVIIYVLRLLGRLVSAHERVASALEVIARKQEDSKG
Ga0311364_105924002	3300031521	Fen	MQPQIMASLGGLFALVYLACVVGVVIYVLRLLGRFVNAHERVASSLDIIARKMRDDAKP
Ga0302320_100062949	3300031524	Bog	MYPMASLGGLFVLLYLACVIAVIIYVLRLLGRLVSAHERVAGALEVIARKQEDSKGDKP
Ga0302320_105307863	3300031524	Bog	MITMTTLSSLFVLLYIVAVIGIIICVIRLLCRFVSAHERVASSLDIIARKMKDDAKP
Ga0302320_121796431	3300031524	Bog	MAGAGAFFVLVYILCVLGIIFLLIRLLYRFVVAQERMAAALEMVARKLKDDAKP
Ga0307373_103245532	3300031672	Soil	MQPQIMEGLLGGIFGLVYLACVIGIIICLVRLLYRFVGAHERVANALEIVARKMKDDAKP
Ga0302321_1004100321	3300031726	Fen	MQPQIMASLGGLFALVYLACVVGVVIYVLRLLGRFVSAHERVASSLDIIARKMRDEAKP
Ga0302321_1035961461	3300031726	Fen	MQPQIMASLGGFFVFIYLACVVAVIIYVLRLLGRFVSAHERVASSLDIIARKMRDDAKP
Ga0302321_1036209061	3300031726	Fen	MQALGGLFVAVYSACVIAAIIYVLRLLGRFVGAHGRAAGALKVVARKMRDDFN
Ga0302319_104987125	3300031788	Bog	MTTLSSLFVLLYIVAVIGIIICVIRLLCRFVSAHERVASSLDIIAR
Ga0316217_100124475	3300031813	Freshwater	MQPQIMASLESFFVFIYLACVIAVIIYVLRLLGRFVSAHEKMAASLDVIARKLKDEAKP
Ga0315277_1000107510	3300032118	Sediment	MPHDIAGTLTGLFVLLYLACVIGVIIYVLRLLGWFVGAHERMAGALELIARKMRDEDKG
Ga0315286_118853351	3300032342	Sediment	MASLGGLFVLVYAACVIAVIIYVLRLLGRFVSAHERAANALEIVARKMQESGKQL
Ga0335085_100029193	3300032770	Soil	MQPQIMAGAGTLFVLVYLACVIAVIIYVLRLLGRFVSAHEKTAASLDIIARKMKDEAKP
Ga0335085_1000849418	3300032770	Soil	MQPQIMAGLGSIFVLIYFACVIGIIICLIRLLYRFVSAHERVASALETVARKLRDDAKP
Ga0335085_102847301	3300032770	Soil	MQPEIMAGLGGFFFIVYIACVIAVIVYVLRLLGRFVGAHERMAASLEIIARKLKDEAKP
Ga0335085_103441622	3300032770	Soil	MQPQIMASLGTFFFFIYLACVVAVIIYVLRLLGRFVSAHERVASALEMVARKMKDDGKP
Ga0335085_106849882	3300032770	Soil	MQPVIAPTIGGLFVLIYFACLIAIIFYVLRLLGRFVSAHEKMAASLDIVARKMRDDAKP
Ga0335078_1003577010	3300032805	Soil	MESLGGLFAIVYLVCVVAVIIYVLQLLGRFVRAHERVASSLDIVARKMRDDAKP
Ga0335078_112859642	3300032805	Soil	MQPVIAPTIGGLFVLIYFACVIAIIFYVLRLLGRFVSAHEKLAASLDIVARKMRDDAKP
Ga0335070_104637291	3300032829	Soil	MQPQNINMAGVGGLFFVLVYLACVIGIIICLIRLLYRFVSAHERVASALEIVARKMKDDGKP
Ga0335081_100738027	3300032892	Soil	MQPQIMASLGTFFVFIYLACVVAVIIYVLRLLGRFVSAHERVASALEIVARKIKDDGKP
Ga0335069_113812682	3300032893	Soil	MSPEIFLLVIYVVCVVGGVALIIYVLQLLGRFVRAHERVASALEVVARKMQDDGKS
Ga0335083_1000121236	3300032954	Soil	MQPVIAPTIGGLFVLIYFACVIAIIFYVLRLLGRFVSAHEKMAASLDIVARKMRDDAKP
Ga0335077_106115852	3300033158	Soil	MQPQTMESLGGLFAIVYLVCVVAVIIYVLQLLGRFVRAHERVASSLDIVARKMRDDAKP
Ga0326728_1002105015	3300033402	Peat Soil	MQPQVMAGVGGLFLVLVYLVCVVAVIIYVLRLLGRLVSAHERVASSLDIIARKMKDDAKP
Ga0326727_1002224715	3300033405	Peat Soil	MAGVGGLFLVLVYLVCVVAVIIYVLRLLGRLVSAHERVASSLDIIARKMKDDAKP
Ga0334822_004119_3263_3442	3300034070	Soil	MQPQIMAGLGGIFALVYLACVVAIIIYIIRLLSRFVSAHERVASALEVVARKLKDDGKP
Ga0326724_0024341_1987_2184	3300034091	Peat Soil	MQPQIGFPPLAGLFGGLFVLIYLACVIAVIICVLRLLGRFVSAHERVAGAVETIARKLDTYGKQI
Ga0370484_0065216_440_619	3300034125	Untreated Peat Soil	MQPQIMASLGTFFFVIYLACVIAIIIYVLRLLGRFVSAHERVASALEIVARKLKDDGKP
Ga0370492_0206976_447_617	3300034282	Untreated Peat Soil	MASLGGLFVLLYLACVIAVIIYVLRLLGRLVSAHERVASALEVIARKQEDSKGDKP
Ga0370492_0322786_61_240	3300034282	Untreated Peat Soil	MQPQIMTSLGTFAFIMYFVCVIAIIISILRLLGRFVGAQEKMAASLGIIARKLMDETKP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061581

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences