Metagenome / Metatranscriptome Family F061321

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061321
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	62 residues
Representative Sequence	MQKHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADTGIWICPILGRCGPAGTPGLGRW
Number of Associated Samples	98
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	65.15 %
% of genes near scaffold ends (potentially truncated)	43.18 %
% of genes from short scaffolds (< 2000 bps)	81.82 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.424 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (31.061 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.758 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 39.77% β-sheet: 2.27% Coil/Unstructured: 57.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF03401	TctC	12.88
PF02566	OsmC	8.33
PF00903	Glyoxalase	6.06
PF13432	TPR_16	3.03
PF05235	CHAD	3.03
PF02798	GST_N	3.03
PF10067	DUF2306	3.03
PF07886	BA14K	2.27
PF14247	DUF4344	2.27
PF12681	Glyoxalase_2	2.27
PF00072	Response_reg	1.52
PF13191	AAA_16	1.52
PF04120	Iron_permease	1.52
PF14559	TPR_19	1.52
PF08327	AHSA1	1.52
PF01323	DSBA	1.52
PF13458	Peripla_BP_6	0.76
PF00196	GerE	0.76
PF00583	Acetyltransf_1	0.76
PF03942	DTW	0.76
PF09976	TPR_21	0.76
PF00043	GST_C	0.76
PF07969	Amidohydro_3	0.76
PF00753	Lactamase_B	0.76
PF08241	Methyltransf_11	0.76
PF01425	Amidase	0.76
PF12833	HTH_18	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	12.88
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	8.33
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	8.33
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	3.03
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	3.03
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.76
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.76
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG3148	tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain	Translation, ribosomal structure and biogenesis [J]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.42 %
Unclassified	root	N/A	7.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.42 %
Unclassified	root	N/A	7.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.42 %
Unclassified	root	N/A	7.58 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	82.58 %
Unclassified	root	N/A	7.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.76 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.76 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	66.67 %
Unclassified	root	N/A	7.58 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	3.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.27 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	27.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	24.24 %
Unclassified	root	N/A	7.58 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.27 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.76 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.76 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	15.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	8.33 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.33 %
Unclassified	root	N/A	7.58 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.79 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.27 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	15.91 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	8.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.33 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.58 %
Unclassified	root	N/A	7.58 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	3.79 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.27 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	0.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	15.91 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	8.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.33 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.58 %
Unclassified	root	N/A	7.58 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	3.79 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.27 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	15.91 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	8.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.33 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.58 %
Unclassified	root	N/A	7.58 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	3.79 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.27 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_13884330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	555	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101648805	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300003911\|JGI25405J52794_10015842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1484	Open in IMG/M
3300004281\|Ga0066397_10009564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1213	Open in IMG/M
3300004463\|Ga0063356_103352978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	690	Open in IMG/M
3300004643\|Ga0062591_100219179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1418	Open in IMG/M
3300005162\|Ga0066814_10055286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	664	Open in IMG/M
3300005167\|Ga0066672_10715887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	640	Open in IMG/M
3300005332\|Ga0066388_100077310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3676	Open in IMG/M
3300005332\|Ga0066388_100881084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1476	Open in IMG/M
3300005332\|Ga0066388_100888668	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300005332\|Ga0066388_101055841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1369	Open in IMG/M
3300005332\|Ga0066388_101570403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1156	Open in IMG/M
3300005332\|Ga0066388_101906126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1061	Open in IMG/M
3300005337\|Ga0070682_100678451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	824	Open in IMG/M
3300005341\|Ga0070691_11050453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	511	Open in IMG/M
3300005344\|Ga0070661_100071319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2556	Open in IMG/M
3300005354\|Ga0070675_101627215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	596	Open in IMG/M
3300005366\|Ga0070659_100192662	All Organisms → cellular organisms → Bacteria → Proteobacteria	1676	Open in IMG/M
3300005367\|Ga0070667_100913625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	817	Open in IMG/M
3300005447\|Ga0066689_10420720	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300005535\|Ga0070684_101093674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	749	Open in IMG/M
3300005553\|Ga0066695_10569534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	685	Open in IMG/M
3300005713\|Ga0066905_100040664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2751	Open in IMG/M
3300005713\|Ga0066905_100072688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2221	Open in IMG/M
3300005713\|Ga0066905_100653689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	896	Open in IMG/M
3300005713\|Ga0066905_100691802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	874	Open in IMG/M
3300005713\|Ga0066905_100858500	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	791	Open in IMG/M
3300005713\|Ga0066905_101070676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	714	Open in IMG/M
3300005713\|Ga0066905_101894954	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	551	Open in IMG/M
3300005764\|Ga0066903_100117134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3684	Open in IMG/M
3300005764\|Ga0066903_100437542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2176	Open in IMG/M
3300005764\|Ga0066903_101294492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1361	Open in IMG/M
3300005764\|Ga0066903_102457043	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1008	Open in IMG/M
3300005764\|Ga0066903_103572314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	838	Open in IMG/M
3300005764\|Ga0066903_104090856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	781	Open in IMG/M
3300005764\|Ga0066903_108075956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	539	Open in IMG/M
3300005937\|Ga0081455_10002625	All Organisms → cellular organisms → Bacteria → Proteobacteria	21308	Open in IMG/M
3300005937\|Ga0081455_10015057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7532	Open in IMG/M
3300005981\|Ga0081538_10043475	All Organisms → cellular organisms → Bacteria → Proteobacteria	2820	Open in IMG/M
3300006038\|Ga0075365_10018642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4271	Open in IMG/M
3300006038\|Ga0075365_10112805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1870	Open in IMG/M
3300006038\|Ga0075365_11234423	Not Available	526	Open in IMG/M
3300006038\|Ga0075365_11239775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	524	Open in IMG/M
3300006057\|Ga0075026_100967273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	527	Open in IMG/M
3300006058\|Ga0075432_10118290	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	993	Open in IMG/M
3300006163\|Ga0070715_10161846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1107	Open in IMG/M
3300006603\|Ga0074064_11687768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	619	Open in IMG/M
3300006604\|Ga0074060_11945441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	746	Open in IMG/M
3300006844\|Ga0075428_100038492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5263	Open in IMG/M
3300006845\|Ga0075421_100770681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1110	Open in IMG/M
3300006845\|Ga0075421_101090656	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300006845\|Ga0075421_101174780	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300006845\|Ga0075421_102313228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300006846\|Ga0075430_101008435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	686	Open in IMG/M
3300006847\|Ga0075431_100134029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2554	Open in IMG/M
3300006880\|Ga0075429_100722000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	873	Open in IMG/M
3300006880\|Ga0075429_101005402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	729	Open in IMG/M
3300006904\|Ga0075424_100414978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1436	Open in IMG/M
3300006969\|Ga0075419_11347589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	531	Open in IMG/M
3300009098\|Ga0105245_12516310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	568	Open in IMG/M
3300009100\|Ga0075418_10185231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2217	Open in IMG/M
3300009137\|Ga0066709_103045509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	614	Open in IMG/M
3300009156\|Ga0111538_12007073	Not Available	727	Open in IMG/M
3300009792\|Ga0126374_10620363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	801	Open in IMG/M
3300010043\|Ga0126380_10013570	All Organisms → cellular organisms → Bacteria → Proteobacteria	3732	Open in IMG/M
3300010043\|Ga0126380_10542229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	903	Open in IMG/M
3300010043\|Ga0126380_10563569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	889	Open in IMG/M
3300010047\|Ga0126382_11110985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	701	Open in IMG/M
3300010048\|Ga0126373_11194931	All Organisms → cellular organisms → Bacteria → Proteobacteria	827	Open in IMG/M
3300010360\|Ga0126372_10081545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2353	Open in IMG/M
3300010360\|Ga0126372_11533610	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300010360\|Ga0126372_12606362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	557	Open in IMG/M
3300010362\|Ga0126377_10950651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	924	Open in IMG/M
3300010362\|Ga0126377_11586549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	729	Open in IMG/M
3300010376\|Ga0126381_101416695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1004	Open in IMG/M
3300010397\|Ga0134124_10809582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	937	Open in IMG/M
3300010398\|Ga0126383_11587580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	744	Open in IMG/M
3300011119\|Ga0105246_11083495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	730	Open in IMG/M
3300012022\|Ga0120191_10109001	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300012198\|Ga0137364_10359533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1087	Open in IMG/M
3300012199\|Ga0137383_10623586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300012200\|Ga0137382_10789897	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	683	Open in IMG/M
3300012204\|Ga0137374_10613061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	828	Open in IMG/M
3300012211\|Ga0137377_11244596	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300012285\|Ga0137370_10254751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1040	Open in IMG/M
3300012355\|Ga0137369_10330183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1121	Open in IMG/M
3300012356\|Ga0137371_10156524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1787	Open in IMG/M
3300012496\|Ga0157353_1034435	Not Available	555	Open in IMG/M
3300012893\|Ga0157284_10048489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	961	Open in IMG/M
3300012905\|Ga0157296_10318765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	551	Open in IMG/M
3300012925\|Ga0137419_11029500	All Organisms → cellular organisms → Bacteria → Proteobacteria	683	Open in IMG/M
3300012930\|Ga0137407_11726151	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300012948\|Ga0126375_10562879	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	863	Open in IMG/M
3300012948\|Ga0126375_11313660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	608	Open in IMG/M
3300012971\|Ga0126369_12109151	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300012985\|Ga0164308_10496124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1020	Open in IMG/M
3300013306\|Ga0163162_13410359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	507	Open in IMG/M
3300013307\|Ga0157372_12902028	Not Available	549	Open in IMG/M
3300015245\|Ga0137409_11614069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	501	Open in IMG/M
3300015258\|Ga0180093_1060559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	871	Open in IMG/M
3300015371\|Ga0132258_10802923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2372	Open in IMG/M
3300015373\|Ga0132257_101151458	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300016387\|Ga0182040_10878002	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M
3300018077\|Ga0184633_10502330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	588	Open in IMG/M
3300018482\|Ga0066669_12191070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	524	Open in IMG/M
3300021082\|Ga0210380_10249874	Not Available	804	Open in IMG/M
3300021082\|Ga0210380_10586279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	511	Open in IMG/M
3300021560\|Ga0126371_10771790	All Organisms → cellular organisms → Bacteria → Proteobacteria	1108	Open in IMG/M
3300025972\|Ga0207668_10185250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1645	Open in IMG/M
3300026285\|Ga0209438_1166835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	579	Open in IMG/M
3300026298\|Ga0209236_1232319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300027401\|Ga0208637_1008687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1002	Open in IMG/M
3300027646\|Ga0209466_1053999	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300027866\|Ga0209813_10395469	Not Available	556	Open in IMG/M
3300027907\|Ga0207428_10084529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2473	Open in IMG/M
3300027909\|Ga0209382_10043255	All Organisms → cellular organisms → Bacteria	5393	Open in IMG/M
3300027909\|Ga0209382_10064914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4321	Open in IMG/M
3300027909\|Ga0209382_11327491	Not Available	727	Open in IMG/M
3300028704\|Ga0307321_1015367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1320	Open in IMG/M
3300028711\|Ga0307293_10065081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1143	Open in IMG/M
3300028712\|Ga0307285_10004044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2913	Open in IMG/M
3300028719\|Ga0307301_10070479	All Organisms → cellular organisms → Bacteria → Proteobacteria	1090	Open in IMG/M
3300028768\|Ga0307280_10269936	Not Available	615	Open in IMG/M
3300028811\|Ga0307292_10019826	All Organisms → cellular organisms → Bacteria → Proteobacteria	2360	Open in IMG/M
3300028875\|Ga0307289_10023596	All Organisms → cellular organisms → Bacteria → Proteobacteria	2388	Open in IMG/M
3300028880\|Ga0307300_10003703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3855	Open in IMG/M
3300031547\|Ga0310887_10420428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	791	Open in IMG/M
3300031720\|Ga0307469_11182052	Not Available	722	Open in IMG/M
3300032174\|Ga0307470_10438897	Not Available	935	Open in IMG/M
3300033004\|Ga0335084_11624157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300033475\|Ga0310811_10179367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2619	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.45%
Host-Associated	Host-Associated	29.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.67%
Plants	Host-Associated → Plants	29.55%
Aquatic	Environmental → Aquatic	3.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.30%
Roots	Host-Associated → Plants → Roots	4.55%
Sediment	Environmental → Aquatic → Sediment	2.27%
Freshwater	Environmental → Aquatic → Freshwater	1.52%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.21%
Loam	Environmental → Terrestrial → Soil → Loam	19.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.79%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	3.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.27%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.76%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.79%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	3.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.27%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.79%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	3.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.03%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.03%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.27%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.52%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.52%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.52%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.76%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.76%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.76%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.76%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.76%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300027401	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_138843301	3300000363	Soil	MVGRPSEVTMPHTRRLQDIGWIVAFVALCAAWSYEAVIATRHAAAPKDTGVWICPI
INPhiseqgaiiFebDRAFT_1016488052	3300000364	Soil	LTGGMQKHLRNAGWIAAFVVLCALWTHEAVKASRQSAPHADRGIWICPILGRCGPTGTPGLGRW*
JGI25405J52794_100158422	3300003911	Tabebuia Heterophylla Rhizosphere	MKRHLITLARLKNAGWITAFVALCVIWGYEAMNASQQSRPRHDTGIWICPILGKCGPAGTPGLGTW*
Ga0066397_100095642	3300004281	Tropical Forest Soil	MLEWLKKAGWIVAFVGLCAIWGHEVLSASRQSRPSNDTAVWICPILGKCGPAGTPGLGKW
Ga0063356_1033529781	3300004463	Arabidopsis Thaliana Rhizosphere	WRLKDLGWIVAFVALCAAWSYEVVHATRHTAVPKDTGIWICPILGRCGPAGTPGLGRW*
Ga0062591_1002191791	3300004643	Soil	VPRIRGVKDVGWIVAFVVLCAAWSYEVVHATRHSAVARNDTGVWICPILGRCGPPG
Ga0066814_100552862	3300005162	Soil	WRLKDLGWIAAFAALCAAWSYEVVHATRHTAVPKDTGIWICPILGRCGPAGTPGLGRW*
Ga0066672_107158871	3300005167	Soil	MLEHLKNAGWIAAFVALCAGWGYEVMNASQRSRSHNYTGIWICPILGSCGPAGTPGLGKW
Ga0066388_1000773103	3300005332	Tropical Forest Soil	MLERVKNAGWIAAFVGLCIVWGYEVVNASRQSQLRQQNTGAWICPIAGNCGPAGTPGLGKW*
Ga0066388_1008810844	3300005332	Tropical Forest Soil	VWRFKSPHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADKSIWVCPILGRCGPAGTPGLGRW*
Ga0066388_1008886683	3300005332	Tropical Forest Soil	MPKQLTNAAWIVAFVVLCAAWGYEAVKASRHAGPRNDGEAWICPILGRCGPPGTPGLGRW
Ga0066388_1010558411	3300005332	Tropical Forest Soil	CPDAIGSALLARQRRRGDTVPMLERLKKAGWIVAFVGLCAVWGHEVVNASRQPRPSNDTAVWICPILGKCGPAGTPGLGKW*
Ga0066388_1015704032	3300005332	Tropical Forest Soil	MLERVKNAGWIAAFVGLCLYWGYELVNASRQSQLRQQNTGAWICPIVGNCGPAGTPGLGKW*
Ga0066388_1019061263	3300005332	Tropical Forest Soil	VWRFRSQHLRNAGWIAAFVVLCALWTHEAVKASRQSARRADTGIWVCPILGRCGPEGTPGLGRW*
Ga0070682_1006784511	3300005337	Corn Rhizosphere	VPRTWRLKDLGWIAAFAALCAAWSYEVVHASRHAAVPKDPGIWICPILGRCGPAGT
Ga0070691_110504532	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MPDRPAIHSISEVRVPRIRGVKDVGWIVAFVALCAAWSYEVVHATRYSAVARNDTGVWICPILGRCGPPGTPGIGRW*
Ga0070661_1000713191	3300005344	Corn Rhizosphere	KDLGWIVAFVALCAAWSYEVVHATRHTAVPKDTGIWICPILGRCGPAGTPGLGRW*
Ga0070675_1016272152	3300005354	Miscanthus Rhizosphere	VPRIRGVKDVGWIVAFVALCAAWSYEVVHATRHSAVARNDTGVWICPILGRCGPPGTPGIGRW*
Ga0070659_1001926623	3300005366	Corn Rhizosphere	RIRGVKDVGWIVAFVVLCAAWSYEVVRATRHSAVARNDTGVWICPILGRCGPPGTPGIGRW*
Ga0070667_1009136252	3300005367	Switchgrass Rhizosphere	MPDRPAIRSINEVRVPRIRGVKDVGWIVAFVVLCAAWSYEVVRATRHSAVARNDTGVWICPILGRCGPPGTPGIGRW*
Ga0066689_104207202	3300005447	Soil	MKRDLITLARLKNAGWIAAFVALCVIWGYEAMNASQQSRSRDDTGIWICPILGKCGPAGTPGLGTW*
Ga0070684_1010936742	3300005535	Corn Rhizosphere	MPAPAIRSINEVRVPRIRGVKDVGWIVAFVVLCAAWSYEVVRATRHSAVARNDTGVWICPILGRCGPPGTPGIGRW*
Ga0066695_105695341	3300005553	Soil	VKRGLITLARLKNAGWIAAFVALCVVWGYEAMNASQQSRSQHDTGIWICPILGKCGPAGTPGLGTW*
Ga0066905_1000406641	3300005713	Tropical Forest Soil	VAVQKSTLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADTGTWICPILGRC
Ga0066905_1000726884	3300005713	Tropical Forest Soil	RRGDTVPMLEWLKKAGWIVAFVGLCAAWGHEVVNASRQSRPQNDTAVWICPILGKCGPAGTPGLGKW*
Ga0066905_1006536891	3300005713	Tropical Forest Soil	VWRFRSSHLRNAGWIAAFVVLCALWTHEVVKAARQSAPRADTGVWVCPILGRCGPAGTPGLGRW*
Ga0066905_1006918021	3300005713	Tropical Forest Soil	MLGPLKNAGWIAAFVALCAAWTYEAINALQRPQPHDHMSVWVCPILGNCGPAGTRGLG
Ga0066905_1008585001	3300005713	Tropical Forest Soil	KSPHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADKSIWVCPILGRCGPAGTPGLGRW
Ga0066905_1010706763	3300005713	Tropical Forest Soil	VWRFRSPHLRNAGWIAAFIVLCALWTHEAVKASRQSAPRADTGIWVCPILG
Ga0066905_1018949542	3300005713	Tropical Forest Soil	VWRFRSPHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADTGIWVCPILGRCGPAGTPGLGRW*
Ga0066903_1001171344	3300005764	Tropical Forest Soil	MLERVKNAGWIAAFVGLCLFWGYELVNASRQSQLRQQNTGAWICPIVGNCGPAGTPGLGKW*
Ga0066903_1004375422	3300005764	Tropical Forest Soil	MLERLKNAAWITAFIGLCIVWGYEVVNASRQSQLRQQNTGTWVCPIAGNCGPAGTPGLGKW*
Ga0066903_1012944922	3300005764	Tropical Forest Soil	VWRFRSSHLRNAGWIAAFVVLCALWTHELVKAARQSAPRADTGVWVCPILGRCGPAGTPGLGRW*
Ga0066903_1024570432	3300005764	Tropical Forest Soil	VWRFRSTHLRNAGWIVAFVVLCALWTHEAVKASRQSAPRADTGIWVCPILGRCGPAGTPGLGRW*
Ga0066903_1035723142	3300005764	Tropical Forest Soil	MRKRLANAAWIAAFVVLCAAWGYEALKASRHVQPRNDADVWICPILGRCGPPGTPGLGRW
Ga0066903_1040908562	3300005764	Tropical Forest Soil	VWRFRSTHLRNAGWIAAFVMLCALWTHEAVKASRQSAPRADTGIWVCPILGRCGPAGTP
Ga0066903_1080759562	3300005764	Tropical Forest Soil	MLERLKNAGWIAAFVALCAVWGYEAMNASQRSRSHNYTGIWICPILGKCGPAGTPGLGR
Ga0081455_100026259	3300005937	Tabebuia Heterophylla Rhizosphere	VWRFRSPHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADTGAWICPILGRCGPAGTPGLGRW*
Ga0081455_100150575	3300005937	Tabebuia Heterophylla Rhizosphere	VAVQKSTLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADTGIWICPILGRCGPAGTPGLGRW*
Ga0081538_100434752	3300005981	Tabebuia Heterophylla Rhizosphere	VWRFRSPHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADTGVWICPILGRCGPAGTPGLGRW*
Ga0075365_100186422	3300006038	Populus Endosphere	VWRFRSSHLRNAGWIVAFVVLCALWTHEAVKASRRSAPRADAGMWICPILGRCGPAGTPGLGRW*
Ga0075365_101128052	3300006038	Populus Endosphere	MLFAAIGGFSEAGVPRRWRLKDLGWIVAFAALCAAWSYEVINATRHSAVPKDTGIWICPILGRCGPAGTPGLGRW*
Ga0075365_112344232	3300006038	Populus Endosphere	MQKHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADTGIWICPILGRCGPAGTPGLGRW
Ga0075365_112397752	3300006038	Populus Endosphere	LKDLGWIVAFVALCAAWSYEVVQATRHAAVPTDTGIWICPILGRCGPAGTPGLGRW*
Ga0075026_1009672731	3300006057	Watersheds	MAHIRRLKDIGWIVAFVALCAAWSYEAVIATRRAAAPKDTGVWICPILGRCGPAGTPG
Ga0075432_101182902	3300006058	Populus Rhizosphere	ADGGMQKHLRNAGWIAAFVVLCALWTHEAVKASRRSAPRADAGMWICPILGRCGPAGTPGLGRW*
Ga0070715_101618461	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	ERPVVPRTWRLKDLGWIVAFVALCAAWSYEVVHATRHTAVPKDTGIWICPILGRCGPAGTPGLGRW*
Ga0074064_116877681	3300006603	Soil	IGIFLGGMSPGAFVALCAAWSYEVVHATRHTAVPKDTGIWICPILGRCGPAGTPGLGRW*
Ga0074060_119454411	3300006604	Soil	WIVAFVALCAAWSYEVVHATRQAAAPKDTGIWICPILGRCGPAGTPGLGRW*
Ga0075428_1000384922	3300006844	Populus Rhizosphere	MKRGLITLPRLKNAGWIAAFVALCVVWGYEAMNASQQSRSQDATGIWICPILGRCGPAGTPGLGTW*
Ga0075421_1007706812	3300006845	Populus Rhizosphere	LTGGMQKHLRNAGWIAAFVVLCALWTHEAVKASRQSTPRADTGIWICPILGRCGPTGTPGLGRW*
Ga0075421_1010906562	3300006845	Populus Rhizosphere	LTGGMQKYLRNAGWIAAFVVLCALWTHEVVKASRQSAPRADTGIWICPILGRCGPAGTPGLGRW*
Ga0075421_1011747802	3300006845	Populus Rhizosphere	MKRGLITLPRLKNAGWIAAFVALCVVWGYEAMNASQQSRSQDDTGIWICPILGRCGPAGTPGLGTW*
Ga0075421_1023132282	3300006845	Populus Rhizosphere	MNRNLFTLTRLKNAGWIAAFVVLCVVWGYEAMNASRQSRSKHDTAIWICPILGKCGPGGTPGLGTW*
Ga0075430_1010084352	3300006846	Populus Rhizosphere	MQKYLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADTGIWICPILGRCGPAGTPGLGRW
Ga0075431_1001340292	3300006847	Populus Rhizosphere	VAVQKFTLRNAGWIVAFVVLCALWTHEAVKASRRSAPRADAGMWICPILGRCGPAGTPGLGRW*
Ga0075429_1007220002	3300006880	Populus Rhizosphere	LTGGMQKHLRNAGWIAAFVVLCALWTHEAVKASRRSAPRADAGMWICPILGRCGPAGTPGLGRW*
Ga0075429_1010054021	3300006880	Populus Rhizosphere	GVKDVGWIVAFVVLCAAWSYEVVRATRHSAVARNDTGVWICPILGRCGPPGTPGIGRW*
Ga0075424_1004149783	3300006904	Populus Rhizosphere	MPDRPAIRSINEVRVPRIRGVKDVGWIVAFVVLCAAWSYEVVHATRHSAVARNDTGVWICPILGRCGPPGTPGIGRW*
Ga0075419_113475892	3300006969	Populus Rhizosphere	VPRIRGVKDVGWIVAFVVLCAAWSYEVVRATRHSAVARNDTGVWICPILGRCGPPGTPGIGRW*
Ga0105245_125163102	3300009098	Miscanthus Rhizosphere	LARPVVPRTWRLKDLGWIVAFVVLCAAWSYEVVHATRHAAVPRDAGIWICPILGRCGPAGTPGLGRW*
Ga0075418_101852315	3300009100	Populus Rhizosphere	VWRFRSSHLRNAGWIVAFVVLCALWTHEAVKASRQSAPRADTKIWICPILGQCGPAGT
Ga0066709_1030455091	3300009137	Grasslands Soil	MRLRHYQILKHLDNAGWILGFVALCTVWGFEVMKASGISQPATLPWICPILGKCGPAGTPDLGR*
Ga0111538_120070732	3300009156	Populus Rhizosphere	MQKYLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADKSIWVCPILGRCGPAGTPGLGRW
Ga0126374_106203632	3300009792	Tropical Forest Soil	VWRFKSPHLRNTGWIAAFVVLCALWTHEAVKASRQSAPRADTGIWVCPILGRCGPAGTPGLGRW*
Ga0126380_100135704	3300010043	Tropical Forest Soil	VWRFRSPHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADSGVWICPILGRCGPAGTPGLGRW*
Ga0126380_105422292	3300010043	Tropical Forest Soil	MLERLKNAAWITAFIGLCIVWGYEVVNASRQSQLRQQNTGAWICPIAGNCGPAGTPGLGKW*
Ga0126380_105635693	3300010043	Tropical Forest Soil	MAAFVVLCALWTHEAVKASRQSAPRADSGVWTCPILGRCGPAGTPGLGRW*
Ga0126382_111109852	3300010047	Tropical Forest Soil	VWRFKSPHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADKSIWVCPILGRCGPAGTPGLGQW*
Ga0126373_111949312	3300010048	Tropical Forest Soil	MFERLKNAAWIAAFTGLCIVWGYEVVDASRQSRLRQQNTGIWICPIAGNCGPAGTPGLGKW*
Ga0126372_100815453	3300010360	Tropical Forest Soil	MLEYLKKAGWIVAFVVVCAFWGIQVMNASRPHDDGGIWICPILGKCGPAGTPGLGKW*
Ga0126372_115336101	3300010360	Tropical Forest Soil	AAFIGLCIVWGYEVVNASRQSQLRQQNSGTWVCPIVGNCGPAGTPGLGKW*
Ga0126372_126063622	3300010360	Tropical Forest Soil	MLGYLKNAVWIAAFVALCAVWGIEVINASRQSRQQDATSIWICPILGKCGPAGTPGLGKW
Ga0126377_109506512	3300010362	Tropical Forest Soil	MLERVKNAAWIAAFVGLCIVWGYEVVNASRQSQLRQQNTGAWICPIAGNCGPAGTPGLGKW*
Ga0126377_115865493	3300010362	Tropical Forest Soil	VWRFRSPHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADTGIWICPILGRCGPAGTPGLGRW*
Ga0126381_1014166952	3300010376	Tropical Forest Soil	MLRGLANAGWIAAFVVLCAVWGYEVMNARRLPQLHHDTGVWICPILGKCGPAGTPGLGRW
Ga0134124_108095822	3300010397	Terrestrial Soil	VPRTWRLKDLGWIVAFVALCAAWSYEVVQATRHAAVPKDTGIWICPILGRC
Ga0126383_115875803	3300010398	Tropical Forest Soil	MKKRLANAAWIAAFVVLCALWSHEVVKASRQSAPRTDKGMWICPILGRCGPPGTPGLGRW
Ga0105246_110834951	3300011119	Miscanthus Rhizosphere	VLRTWRLKDLGWIAAFVVLCAAWSYEVVHATRHPAVPKDAGIWICPILGRCGPAGTPGLGRW
Ga0120191_101090012	3300012022	Terrestrial	MKRGLITLARLKNAGWIAAFVALCVVWGYEAMNASSRSQDATGIWICPILGRCGPAGTPGLGTW*
Ga0137364_103595332	3300012198	Vadose Zone Soil	MKRGLITLARLKNAGWIAAFVALCVVWGYEAMNASQQSRSRDDTGIWICPILGKCGPAGTPGLGTW*
Ga0137383_106235863	3300012199	Vadose Zone Soil	MKRGLITLARLKNAGWIAAFVALCVVWGYEAMNASQQSRSRDDTGIWICPILGKCGPA
Ga0137382_107898972	3300012200	Vadose Zone Soil	MQKRLANAAWIAAFVVLCAAWGYEALKASRHVRPRDDASIWICPILGRCGPPGTPGLGRW
Ga0137374_106130611	3300012204	Vadose Zone Soil	MKRGLITLARLKNAGWIAAFVALCVVWGYEAMNASQQSRSQHDTGIWICPILGKCGPAGT
Ga0137377_112445961	3300012211	Vadose Zone Soil	MKRGLITLARLKNAGWIAAFVALCVVWGYEAMNASQQSRSQHDTGIWICPILGKCGPAETPGLGTW*
Ga0137370_102547512	3300012285	Vadose Zone Soil	MKRGLITLARLKNAGWIAAFVALCVVWGYEAMNASQQSRSRDYTGIWICPILGKCGPAGTPGLGTW*
Ga0137369_103301831	3300012355	Vadose Zone Soil	MKRGLITLARLKNAGWIAAFVALCVVWGYEAMNASQQSRSQHDTGIWICPILGKCGPAGTPG
Ga0137371_101565242	3300012356	Vadose Zone Soil	MKRGLITLARLKNAGWIAAFVALCVIWGYEAMNASQQSRSRDDTGIWICPILGKCVPAGTPGLGTW*
Ga0157353_10344352	3300012496	Unplanted Soil	MQKHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADKSIWVCPILGRCGPAGTPGLGRW
Ga0157284_100484894	3300012893	Soil	VPRRWRLKDLGWIVAFVALCAAWSYEVVHATRHTAVPKDTGIWICPILGRCG
Ga0157296_103187651	3300012905	Soil	VPRTWRLKDLGWIVAFVALCAAWSYEVVHATRHTAVPKDTGIWICPILGRCGPAGT
Ga0137419_110295002	3300012925	Vadose Zone Soil	MVGGHSEVTVPQTRRLKDIGWIVAFVALCAAWSYEVIVASRYAAAPKDTGVWICPILGRCGPAGT
Ga0137407_117261512	3300012930	Vadose Zone Soil	MKRGLITLARLKNAGWIAAFVALCVIWGYEAMNASQQSRSRDDTGIWICPILGKCGPAGTPGLGTW*
Ga0126375_105628791	3300012948	Tropical Forest Soil	VWRFRSQHLRNAGWIAAFVVLCALWTHEAVKASRQASPRADTGIWVCPILGRCGPAGTPGLGRW*
Ga0126375_113136602	3300012948	Tropical Forest Soil	VWRFRSTHLRNAGWIVAFVVLCALWTHEAVKASRQSAPRADTGIWVCPILGRCGP
Ga0126369_121091512	3300012971	Tropical Forest Soil	LLRMFERLKNAGWIAAFIVLCVVWGYEVVNASRHSRAQNQDAGAWICPIAGNCGPAGTPGLGKW*
Ga0164308_104961243	3300012985	Soil	LCQSCRDIIDTSIPDRPAIHSISEVRVPRIRGVKDVGWIVAFVVLCAAWSYEVVHATRHSAVARNDTGVWICPIL
Ga0163162_134103592	3300013306	Switchgrass Rhizosphere	MPDRPAIRSISEVRVPRIRGVKDVGWIVAFVVLCAAWSYEVVHATRHSAVARNDTGVWICPILGRCGPPGTPGIGRW*
Ga0157372_129020281	3300013307	Corn Rhizosphere	VPRTWRLKDLGWIVAFVVLCAAWSYEVVHATRHAAVPRDAGIWICPILGR
Ga0137409_116140691	3300015245	Vadose Zone Soil	VMVGGHSEVTVPQTRRLKDIGWIVAFVALCAAWSYEAIIATRHAAAPKDTGVWICPILGRCGPAGTPGLGRW*
Ga0180093_10605591	3300015258	Soil	VPRTWRLKDLGWIAAFAALCAAWSYEVVHASRHAAVPKDPGIWICPILGRCG
Ga0132258_108029232	3300015371	Arabidopsis Rhizosphere	MLKFLDKAGWIAAFAVLCVAWGYQVVRAAKHEPSPARDQGTWICPILGQCGPPGTPGLGRW*
Ga0132257_1011514582	3300015373	Arabidopsis Rhizosphere	MQKHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADTGIWICPILGRCGPASTPGLGRW
Ga0182040_108780021	3300016387	Soil	MSKHLKDAAWIAAFVLLCAVWVHEAVRASRKPEADTGIWICPILGKCGP
Ga0184633_105023301	3300018077	Groundwater Sediment	MPHTRRLQDIGWIVAFVALCAAWSYEVVIATRHAAAPNDTGAWICPILGRCGPA
Ga0066669_121910702	3300018482	Grasslands Soil	MKRGLITLARLKNAGWIAAFVALCVVWGYEAMNASQQSRSRDDTGIWICPILGKCGPAETPGLGTW
Ga0210380_102498741	3300021082	Groundwater Sediment	VPRIWRLKDLGWIVAFVAVCAAWSYEVVHATRHAAVPNDTGIWICPIL
Ga0210380_105862791	3300021082	Groundwater Sediment	MPHTRRLKDIGWIVAFVALCAAWSYEAIIATRHAAAPKDTGVWICPILGRCGPAGT
Ga0126371_107717902	3300021560	Tropical Forest Soil	AGWIAAFIGLCIVWGYEVVNASRQSQLRQQNSGTWVCPIAGNCGPAGTPGLGKW
Ga0207668_101852504	3300025972	Switchgrass Rhizosphere	VPRIWRLKDLGWIVAFVAVCAAWSYEVVHATRHAAVPNDTGIWICPILGRCGPAGTPGLG
Ga0209438_11668352	3300026285	Grasslands Soil	MLERLKNAGWILAFVALCAVWGYEIMNASQQTRPHNYKQIWICPILGNCGPPGTPGLGRW
Ga0209236_12323192	3300026298	Grasslands Soil	MKRDLITLARLKNAGWIAAFVALCVIWGYEAMNASQQSRSRDDTGIWICPILGKCGPAGTPGLGTW
Ga0208637_10086873	3300027401	Soil	VPRTWRLKDLGWIVAFVALCAAWSYEVVHATRHTAVPKDTGIWICPILGRCGPAGTPGL
Ga0209466_10539991	3300027646	Tropical Forest Soil	VWRFRSQHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADKSIWVCPILGRCGPAGTPGLGRW
Ga0209813_103954692	3300027866	Populus Endosphere	VPRRWRLKDLGWIVAFVALCAAWSYEVVQATRHAAVPKDTGIWICPI
Ga0207428_100845295	3300027907	Populus Rhizosphere	MPDRPAIRSINEVRVPRIRGVKDVGWIVAFVVLCAAWSYEVVRATRHSAVARNDTGVWICPILGRCGPPGTPGIGRW
Ga0209382_100432552	3300027909	Populus Rhizosphere	MKRGLITLPRLKNAGWIAAFVALCVVWGYEAMNASQQSRSQDDTGIWICPILGRCGPAGTPGLGTW
Ga0209382_100649145	3300027909	Populus Rhizosphere	VWRFRSSHLRNAGWIVAFVVLCALWTHEAVKASRRSAPRADAGMWICPILGRCGPAGTPGLGRW
Ga0209382_113274912	3300027909	Populus Rhizosphere	MQKYLRNAGWIAAFVVLCALWTHEVVKASRQSAPRADTGIWICPILGRCGPAGTPGLGRW
Ga0307321_10153673	3300028704	Soil	VPHTRRLKDIGWIVAFVALCAAWSYEAIIATRHAAAPKDTGVWICPILGRCGPAGTPGLG
Ga0307293_100650811	3300028711	Soil	VPRIWRLKDLWWIVAFVAVCAAWSYEVVHATRHAAVPNDTGIWICPILGRCG
Ga0307285_100040441	3300028712	Soil	VPRTWRLKDLGWIAAFAALCAAWSYEVVHASRHAAVPKDPGIWICPILGRCGPAGTPG
Ga0307301_100704791	3300028719	Soil	MVGGHSEVTVPQTRRLKDIGWIVAFVALCAAWSYEVIIATRHAAAPKDTGVWICPILGRCGPA
Ga0307280_102699362	3300028768	Soil	VPRIWRLKDLGWIVAFVAVCAAWSYEVVLATRHAAVPNDTGIWICPILGR
Ga0307292_100198263	3300028811	Soil	MVGGHSEVTVPQTRRLKDIGWIVAFVALCAAWSYEVIVASRYAAAPKDTGVWICPILGRCGPAGTPGLGRW
Ga0307289_100235964	3300028875	Soil	MVGGHSEVTVPQTRRLKDIGWIVAFVALCAAWSYEVIIASRYAAAPKDTGVWICPILGRCGPAGTPGLGRL
Ga0307300_100037035	3300028880	Soil	MVGGHSEVTVPQTRRLKDIGWIVAFVALCAAWSYEVIIASRYAAAPKDTGVWICPILGRCGPAGTPGLGRW
Ga0310887_104204281	3300031547	Soil	VPRIRGVKDVGWIVAFVVLCAAWSYEVVHATRHSAVARNDTDVWICPILGRCGPPGTPGIGRW
Ga0307469_111820522	3300031720	Hardwood Forest Soil	MRRSSADGGMQKHLRNAGWIAAFVVLCALWTHEAVKASRQSAPRADTGIWICPILGRCGPAGTPGLGRW
Ga0307470_104388971	3300032174	Hardwood Forest Soil	MQKHLRNAGWIAAFAVLCALWTHEAMKASRQSAPRADTGIWICPILGRCGPA
Ga0335084_116241573	3300033004	Soil	VWRFRSPHLRNAGWIAAFVVLCAAWTHEAVKASRQSAPRADTGIWICPILGRCGPAGTPGLGRW
Ga0310811_101793675	3300033475	Soil	MPDRPAIRSISEVRVPRIRGVKDVGWIVAFVVLCAAWSYEVVHATRHSAVARNDTGVWICPILGRCGPP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061321

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences