Metagenome / Metatranscriptome Family F060257

Basic Information
Family ID	F060257
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	56 residues
Representative Sequence	MKRIVLAALVLVTCIAFATELFAQASQTVNPVPITPPTINTTTLTCQVNCDTQAM
Number of Associated Samples	103
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.43 %
% of genes near scaffold ends (potentially truncated)	60.15 %
% of genes from short scaffolds (< 2000 bps)	57.89 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Most Common Taxonomy
Group	Bacteria (50.376 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.835 % of family members)
Environment Ontology (ENVO)	Unclassified (39.850 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.872 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 40.96% β-sheet: 0.00% Coil/Unstructured: 59.04%
Feature Viewer

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Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF03401	TctC	57.89
PF00962	A_deaminase	10.53
PF03928	HbpS-like	6.77
PF02586	SRAP	3.01
PF13191	AAA_16	0.75
PF02604	PhdYeFM_antitox	0.75
PF13701	DDE_Tnp_1_4	0.75
PF02622	DUF179	0.75
PF09694	Gcw_chp	0.75
PF00199	Catalase	0.75
PF13515	FUSC_2	0.75
PF13578	Methyltransf_24	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	57.89
COG1816	Adenosine/6-amino-6-deoxyfutalosine deaminase	Nucleotide transport and metabolism [F]	10.53
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	3.01
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.75
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	0.75
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.75
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.75

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.38 %
Unclassified	root	N/A	49.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.38 %
Unclassified	root	N/A	49.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.38 %
Unclassified	root	N/A	49.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	23.31 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	23.31 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.50 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	23.31 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.75 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000787\|JGI11643J11755_11330841	Not Available	643	Open in IMG/M
3300000890\|JGI11643J12802_11364767	All Organisms → cellular organisms → Bacteria → Proteobacteria	812	Open in IMG/M
3300000955\|JGI1027J12803_100367112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1000	Open in IMG/M
3300004633\|Ga0066395_10194230	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300005366\|Ga0070659_101694949	Not Available	565	Open in IMG/M
3300005518\|Ga0070699_100701784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	924	Open in IMG/M
3300005556\|Ga0066707_10876056	Not Available	551	Open in IMG/M
3300005713\|Ga0066905_101506682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	612	Open in IMG/M
3300005713\|Ga0066905_102236272	Not Available	510	Open in IMG/M
3300005764\|Ga0066903_102928490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	925	Open in IMG/M
3300005764\|Ga0066903_103922862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300005764\|Ga0066903_103969832	Not Available	793	Open in IMG/M
3300005764\|Ga0066903_107298856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	571	Open in IMG/M
3300005764\|Ga0066903_107630669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	557	Open in IMG/M
3300006051\|Ga0075364_10099032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1940	Open in IMG/M
3300006175\|Ga0070712_100668694	All Organisms → cellular organisms → Bacteria → Proteobacteria	883	Open in IMG/M
3300006175\|Ga0070712_101818044	Not Available	533	Open in IMG/M
3300006176\|Ga0070765_101213949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300006354\|Ga0075021_11134308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300006794\|Ga0066658_10182808	All Organisms → cellular organisms → Bacteria → Proteobacteria	1096	Open in IMG/M
3300009137\|Ga0066709_101984598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	807	Open in IMG/M
3300009792\|Ga0126374_10206396	All Organisms → cellular organisms → Bacteria → Proteobacteria	1248	Open in IMG/M
3300009792\|Ga0126374_10789001	Not Available	724	Open in IMG/M
3300010047\|Ga0126382_10188416	Not Available	1455	Open in IMG/M
3300010047\|Ga0126382_10683893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	858	Open in IMG/M
3300010329\|Ga0134111_10571740	Not Available	503	Open in IMG/M
3300010358\|Ga0126370_11759007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300010360\|Ga0126372_13159114	Not Available	512	Open in IMG/M
3300010361\|Ga0126378_11677910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	722	Open in IMG/M
3300010366\|Ga0126379_10330019	All Organisms → cellular organisms → Bacteria → Proteobacteria	1546	Open in IMG/M
3300010366\|Ga0126379_12435208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300010401\|Ga0134121_11947087	Not Available	618	Open in IMG/M
3300010863\|Ga0124850_1002385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5506	Open in IMG/M
3300012198\|Ga0137364_11176234	Not Available	575	Open in IMG/M
3300012201\|Ga0137365_10028509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4301	Open in IMG/M
3300012353\|Ga0137367_10789514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300012362\|Ga0137361_10568599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1040	Open in IMG/M
3300012971\|Ga0126369_12836331	Not Available	567	Open in IMG/M
3300015371\|Ga0132258_11476811	Not Available	1717	Open in IMG/M
3300015371\|Ga0132258_12188505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1389	Open in IMG/M
3300016357\|Ga0182032_10963192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	727	Open in IMG/M
3300016371\|Ga0182034_10407848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1116	Open in IMG/M
3300016387\|Ga0182040_10816875	All Organisms → cellular organisms → Bacteria → Proteobacteria	769	Open in IMG/M
3300016387\|Ga0182040_11380763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596	Open in IMG/M
3300016404\|Ga0182037_10977115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300021178\|Ga0210408_10086146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2465	Open in IMG/M
3300021560\|Ga0126371_11861826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	722	Open in IMG/M
3300021560\|Ga0126371_13727573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300025910\|Ga0207684_10373792	All Organisms → cellular organisms → Bacteria → Proteobacteria	1226	Open in IMG/M
3300026320\|Ga0209131_1078541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1785	Open in IMG/M
3300026524\|Ga0209690_1097472	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300028814\|Ga0307302_10457777	Not Available	632	Open in IMG/M
3300028884\|Ga0307308_10249359	Not Available	851	Open in IMG/M
3300031114\|Ga0308187_10181615	Not Available	724	Open in IMG/M
3300031543\|Ga0318516_10372225	All Organisms → cellular organisms → Bacteria → Proteobacteria	824	Open in IMG/M
3300031545\|Ga0318541_10452044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	718	Open in IMG/M
3300031546\|Ga0318538_10037782	All Organisms → cellular organisms → Bacteria → Proteobacteria	2299	Open in IMG/M
3300031546\|Ga0318538_10151037	All Organisms → cellular organisms → Bacteria → Proteobacteria	1227	Open in IMG/M
3300031549\|Ga0318571_10020553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1722	Open in IMG/M
3300031561\|Ga0318528_10058155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1969	Open in IMG/M
3300031680\|Ga0318574_10034675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2575	Open in IMG/M
3300031681\|Ga0318572_10137883	All Organisms → cellular organisms → Bacteria → Proteobacteria	1403	Open in IMG/M
3300031682\|Ga0318560_10005558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5070	Open in IMG/M
3300031765\|Ga0318554_10320645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	881	Open in IMG/M
3300031769\|Ga0318526_10129745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1020	Open in IMG/M
3300031770\|Ga0318521_10465698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	757	Open in IMG/M
3300031770\|Ga0318521_10571278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	683	Open in IMG/M
3300031781\|Ga0318547_10246581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1076	Open in IMG/M
3300031795\|Ga0318557_10169929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	990	Open in IMG/M
3300031832\|Ga0318499_10312804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300031859\|Ga0318527_10154751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	962	Open in IMG/M
3300031896\|Ga0318551_10007899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4455	Open in IMG/M
3300031897\|Ga0318520_10389645	All Organisms → cellular organisms → Bacteria → Proteobacteria	850	Open in IMG/M
3300031945\|Ga0310913_10801118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300031946\|Ga0310910_10716812	All Organisms → cellular organisms → Bacteria → Proteobacteria	790	Open in IMG/M
3300031946\|Ga0310910_11158965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300032035\|Ga0310911_10095749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1621	Open in IMG/M
3300032042\|Ga0318545_10036348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1633	Open in IMG/M
3300032055\|Ga0318575_10471627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300032059\|Ga0318533_10156473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1615	Open in IMG/M
3300032065\|Ga0318513_10469731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300032068\|Ga0318553_10118306	All Organisms → cellular organisms → Bacteria → Proteobacteria	1360	Open in IMG/M
3300032091\|Ga0318577_10180464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1008	Open in IMG/M
3300032159\|Ga0268251_10505734	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.74%
Host-Associated	Host-Associated	5.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.98%
Plants	Host-Associated → Plants	5.26%
Aquatic	Environmental → Aquatic	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.50%
Sediment	Environmental → Aquatic → Sediment	0.75%
Roots	Host-Associated → Plants → Roots	0.75%
Phylloplane	Host-Associated → Plants → Phylloplane	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.44%
Loam	Environmental → Terrestrial → Soil → Loam	16.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.75%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.75%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.06%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.75%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.01%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.01%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.75%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.75%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_113308411	3300000787	Soil	MTRIVLAALVVFGFAAFATEVFAQAGQTVNPVPITPPTLNTTTLTCQINCDTLAMTCQNSCIPTTAAA
JGI11643J12802_113647671	3300000890	Soil	PMTRIVLAALVVFGFAAFATEVFAQAGQTVNPVPITPPTLNTTTLTCQINCDTLAMTCQNSCIPTTAAAA
JGI1027J12803_1003671122	3300000955	Soil	MKRIVLAALVLVTCIAFATELFAQASQTVNPVPITPPTINTTTLTCQVNCDTQAM
JGI25615J43890_10423601	3300002910	Grasslands Soil	MTRIALAALALLSSAAFATEVAAXAGQTINPVPLTPPTLNLTTPTCQTTCDTQAMLC
Ga0062595_1018544512	3300004479	Soil	MKRIVLAALVLVTCIAFATELFAQASQTVNPVPITPPTINTTTLTCQVNCD
Ga0066395_101942302	3300004633	Tropical Forest Soil	MTRILLAALVLLNCTAFATELFAQANQTVNPVPLTPPTVNTTTTTCQVNCDTQA
Ga0066395_105401862	3300004633	Tropical Forest Soil	MKRVVPGALVLVSFVAFATELFAQANQTVNPVPITPPTINTTT
Ga0066678_107093121	3300005181	Soil	MTRIALAALVLLSSAVFATELAAQAGQVINPIPLTPPTLNLTTTTCQTTCDTQAML
Ga0066388_1006727482	3300005332	Tropical Forest Soil	MTRIVLAALVVLNCVAFATVVFAQANQTVNPVPITPPTINTTSDQL*
Ga0066388_1041978142	3300005332	Tropical Forest Soil	MTRIALAAIALLSSAVLATEVAAQSGQVTNPVPLTTPSLNLQTTTCQTTCDTQ
Ga0070659_1016949491	3300005366	Corn Rhizosphere	MTRIVLAALVVFGFAAFATEVFAQAGQTVNPVPITPPTLNTTTLTCQINCDTLAMTCQNSCIPTTAA
Ga0070706_1013793231	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIVLAALVLVTCVTFATELFAQASQTVNPVPITPPTINTTTLTCQVN
Ga0070699_1007017842	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIVLAALVLVTCVTFATELFAQASQTVNPVPITPPTINTTTLTCQVNCDTQ
Ga0070697_1007831432	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIVLAALVLVTCVTFATELFAQASQTVNPVPITPPTINTTTLT
Ga0066707_108760562	3300005556	Soil	MTRVMLAALVLLNCALFGTETFGQAGQTINPVPLTAPTVNTTTTTCQINCDTQAMTCHGSCLPT
Ga0066705_104925792	3300005569	Soil	MTRIALAALVLLSSAVFATEVAAQAGQVINPVPLTAPTLNLTTTTCQTTCDTQAMLCLNTCVS
Ga0066905_1006959151	3300005713	Tropical Forest Soil	MKRIVLAALVLVTCVAFATELFAQASQTVNPVPITPPTINTTTLTCQ
Ga0066905_1015066821	3300005713	Tropical Forest Soil	MTRLGLLILALLTCTSLSTELFAQANQTSPPVPLVTPSLNTTTLTCQINCDTQAMNCQNSCLPS
Ga0066905_1022362721	3300005713	Tropical Forest Soil	MTRIMLAALVLLNCTAFATELFAQANQTVNPVPLTPPTVNTTTTTCQVNCDTQAMNCQNSCIPA
Ga0066903_1029284902	3300005764	Tropical Forest Soil	MKRIVPGALVLVSCVAFATELFAQANQTVNPVPLTPPTINTTTTTCQVNCDTQAMICQNACIPTTAAAQANPASSSS
Ga0066903_1039228622	3300005764	Tropical Forest Soil	MKRILLAALVLVTCVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTTAATLANPAQS
Ga0066903_1039698322	3300005764	Tropical Forest Soil	MRHILLAAVVLLNCASFGTELFAQANQTINPVPLTPPTVNTTTTTCQI
Ga0066903_1072988562	3300005764	Tropical Forest Soil	MTRIVLAALVLLNCTAFATEVFAQANQTVNPVPLTPPTVNTTTTTCQVNCDTQAMNCQNS
Ga0066903_1076306692	3300005764	Tropical Forest Soil	MKRVVPGALVLVSFVAFATELFAQANQTVNPVPITPPTINTTTTTCQVNCDTQAMICQNACIPTTAAA
Ga0075364_100990323	3300006051	Populus Endosphere	MTRLVTRLGLATLVLLCGASIATELFAQASQTAPPVPLVAPTLNTTTLTCQINCDTQAM
Ga0070716_1016793751	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIVLAALVLVTCIAFATELFAQASQTVNPVPITPP
Ga0070712_1006686941	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTRIVLAALVVFGFAAFATEVFAQAGQTVNPVPITPPTLNTTTLTCQINCDTLAMTCQNS
Ga0070712_1018180441	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTRIVLAALLVFGFAACATEVFAQAGQTVNPVPITPPTLNTTTLTCQINCDTLAMTCQNS
Ga0070765_1012139492	3300006176	Soil	MKRIALGALVLVTCVAFATELLAQAGQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTTAAT
Ga0075021_111343082	3300006354	Watersheds	MKRIVLGTLVLATCVAFATELFGQASQTVNPVPITPPTINTTTLTCQVNCDTQAMNCQNSCIPTTAAV
Ga0066658_101828082	3300006794	Soil	MTRIVLAALGVLSCTAFATEVFAQAGQTVNPVPITPPTLNQTTLTCQINCDTLAMTCQNTCIP
Ga0066659_110247884	3300006797	Soil	MTRIVLAALVLLNCAAFGTEVFAQASQTVNPVPITPPTLN
Ga0075419_112187942	3300006969	Populus Rhizosphere	MTRFVRAALVLLSCAVFATELSAQAGQVINPVPLTPPSVNTATSTCQTGCDVQAMTCLNACVPTSAASAA
Ga0099827_108138832	3300009090	Vadose Zone Soil	MTRIALVALVLLSSAACATEVAAQAGQTINPVPLTPPTLNLTTPTCQTTCDTQAMLCLNTCVSSAAA
Ga0066709_1019845982	3300009137	Grasslands Soil	MTRIVLAALVLLNCTAFASEVFAQAGQTVNPVPITPPSINTTTLTCQINCDTQAMNCQNSCVPT
Ga0114129_109438572	3300009147	Populus Rhizosphere	MKRIVLGALVLVTCVAFATELLAQAGQTVNPVPITPPT
Ga0126374_102063961	3300009792	Tropical Forest Soil	MLAALVLLNCTAFATELFAQANQTVNPVPLTPPTVNTTTTTCQVNCDTQA
Ga0126374_107890012	3300009792	Tropical Forest Soil	MTRMALAALALLSSAVFATELAAQSGQVTNPVPLAPPTVNTTTTTCQV
Ga0126382_101884161	3300010047	Tropical Forest Soil	MMRIVLTALVLLNWMASGSELFAQSNQVTNPVPLTPPNVNTTTTNCQISCDTQAMN
Ga0126382_106838932	3300010047	Tropical Forest Soil	MTRLGLPILVLLTCASLTTELFAQANQTSPPVPLVTPTLNTTTLTCQINCDTQAMNCQNSCL
Ga0126373_118777772	3300010048	Tropical Forest Soil	MKRIVSGALVLVSCVAFATELFAQANQTVTPVPLTPP
Ga0134084_103124581	3300010322	Grasslands Soil	VLLSSAVFATELAAQAGQVINPVPLTAPTLNLTTTTCQTTCDTQAMLCLNTCVSA
Ga0134111_105717401	3300010329	Grasslands Soil	MTRIALAALVLLSSAVFVTEVAAQAGQVINPVPLTPPTLNLTTTTCQTT
Ga0126370_117590071	3300010358	Tropical Forest Soil	MKRILLAALVLVTSVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMI
Ga0126370_123861822	3300010358	Tropical Forest Soil	MKRIVLAALVLVTSVAFATELFAQASQTVNPVPITPPTI
Ga0126372_131591141	3300010360	Tropical Forest Soil	MTRLGLSILVLLTCAALTTELFAQANQTSPPVPLLTPSLNTTTLTCQINCDTQAMNCQNSCLPSAVATPG
Ga0126378_116779101	3300010361	Tropical Forest Soil	MLAALVLLNCTAFATEVFAQANQTVNPVPLTPPTVNTTTTTCQVN
Ga0126379_103300193	3300010366	Tropical Forest Soil	MTRIVLAALVVLSCTALATEVFAQAGQTVNPVPITPPTLNQTTLTCQINCDTL
Ga0126379_124352082	3300010366	Tropical Forest Soil	MTRLGLSILVLLTCAALTTELFAQANQTSPPVPLVTPSLNTTTLTCQINCDTQAM
Ga0126379_133334842	3300010366	Tropical Forest Soil	MIRIVLAALVLLNCTAVATEVFAQSGQVTNPVPLTPPTVN
Ga0134121_119470871	3300010401	Terrestrial Soil	MTRIVLAALVVFGFAAFATEVFAQAGQTVNPVPITPPTLNTTTLTCQINCDTLAMTCQNSCIPTTAAAA
Ga0124850_10023855	3300010863	Tropical Forest Soil	MTRIVLAAFVLLSCASFATELFAQASQTVNPVPITPPTLNTTTTACQINCDTQAMLCVNNCVPITGSAAQANPTAVGVLKPLD*
Ga0124844_11646152	3300010868	Tropical Forest Soil	MKRIVLAALVLVTSVAFATELFAQASQTVNPVPITPPT
Ga0137364_111762341	3300012198	Vadose Zone Soil	MTRIVLAALALLIGATFGTEVFAQAGQTINPVPLTPPSINTTATTCRINCDTQAMTCQNTCVPPAAAHLGYIVPF*
Ga0137365_100285091	3300012201	Vadose Zone Soil	MTRIVLAALALLICATFGTEVFAQAGQTINPVPLTPPSLNTTTTTCQINCDTQAMNCQ
Ga0137363_110262531	3300012202	Vadose Zone Soil	MRRIVLAALVLLNCASFGTELFAQASQTVTPVPITPPTLN
Ga0137367_107895141	3300012353	Vadose Zone Soil	MTRVVLAALVLLSCAVFATELSAQSGQVINPVPLTPPSVNTATSTCQTGCD
Ga0137361_105685991	3300012362	Vadose Zone Soil	MKRIVPGALVLVTCVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMNCQN
Ga0137361_117860442	3300012362	Vadose Zone Soil	MTRIVLAALALLICATFGTEVFAQASQTVNPVPLTPPSINT
Ga0137395_110052471	3300012917	Vadose Zone Soil	MRRIVLAALVLLNCASFGTELFAQASQTVTPVPITPP
Ga0164298_102977861	3300012955	Soil	MTRIVLAALVVFGFAAFATEVFAQAGQTVNPVPITPPTLNTTPLTCQINC
Ga0126369_128363311	3300012971	Tropical Forest Soil	MPRIVQVALVLLSCALFATEVFGQAGQVTNPVPLTAPSINTTTTTCQINCDTVAMTCLGAAFRPPPRPS*
Ga0132258_114768114	3300015371	Arabidopsis Rhizosphere	MKQLVVAALVLLNCASFTTELFAQASQTAPPVPLTTPSVNTTTLTCQINCDTLAMNCQNSCLP
Ga0132258_121885053	3300015371	Arabidopsis Rhizosphere	MRRIVLVALGVLSCAAFATEVFAQAGQTVNPVPITPPTLNTTTLTCQI
Ga0182041_106332773	3300016294	Soil	MKRIVPAALVLVTCVAFATELLAQASQTVNPVPITPPTINTTT
Ga0182033_105720082	3300016319	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPPTINTTTLTCQVNC
Ga0182032_109631922	3300016357	Soil	MKRIVPAALVLVTCVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQ
Ga0182032_110045122	3300016357	Soil	MKRIVLGALVLVTCVTFATELFAQASQTVNPVPITPPTINTTTLTCQV
Ga0182034_104078482	3300016371	Soil	MKRIVPAALVLVTCVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTTAATL
Ga0182034_114274932	3300016371	Soil	MKRIVLGALVLVTCVTFATELFAQASQTVNPVPITPPTINTTTL
Ga0182040_103158041	3300016387	Soil	MPRIVQAALVLLSCTLFATEVFAQSGQVTNPVPLTAPSINTTTTT
Ga0182040_108168752	3300016387	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMIC
Ga0182040_113807633	3300016387	Soil	MKRIVPAALVLVTCVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMIC
Ga0182037_109771152	3300016404	Soil	MKRIVPGALVLVSCVAFATELFAQASQTVNPVPITPPTINTTTTTCQVNCDTQAMICQNACIPT
Ga0066655_105358001	3300018431	Grasslands Soil	MKRIVLAALVLVTCIAFATELFAQASQTVNPVPITPPTINTTTLT
Ga0210403_107533202	3300020580	Soil	MTRIVLAALVVFSFAAFATEVFAQAGQTVNPVPITPPTLNTTTLTCQI
Ga0210408_100861461	3300021178	Soil	MKRIVLGALVLVTCVAFATELLAQAGQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTTAATLAN
Ga0126371_118618262	3300021560	Tropical Forest Soil	MKRIVSGALVLVSCVAFATELFAQANQTVTPVPLTPPTINTTTTMCQVNCDTQAMICQNACIPTTAAAQANPA
Ga0126371_121016292	3300021560	Tropical Forest Soil	MKRIVSGALVLVSCVAFATELFAQANQTVTPVPLTPPTINTTTTTCQVNC
Ga0126371_137275731	3300021560	Tropical Forest Soil	MTRIVLAALVLLNCTAFATEVFAQANQTVNPVPLTPPTVNTTTTTCQV
Ga0207684_103737922	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIVLAALVLVTCVTFATELFAQASQTVNPVPITPPTINTTTLTCQVNCDT
Ga0209131_10785412	3300026320	Grasslands Soil	MTRIVLAALALLICATFGTEVFAQASQTVTPVPLTPPSINTTTTTCQINCDT
Ga0209470_13095791	3300026324	Soil	MTRIALAALVLLSSAVFVTEVAAQAGQVINPVPLTAPTLNLTTT
Ga0209690_10974722	3300026524	Soil	MKRIVLAALVLVTCIAFATELFAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMNCQNSCIPTTAAVAANP
Ga0209474_101511661	3300026550	Soil	MTRIALAALVLLSSAVFVTEVAAQAGQVINPVPLTAPTLNLTTTTCQTTCDTQAMLCLN
Ga0137415_106881661	3300028536	Vadose Zone Soil	MKRIVLGTLVLATCVAFATELFAQASQTVNPVPITPPT
Ga0307302_104577772	3300028814	Soil	MTRLVLAALVLLNCASFTTELFAQASQTAPPVPLTTPSVNTTNLTCQINCDTQAMN
Ga0307308_102493593	3300028884	Soil	MTRLVLAALVLLNCASFTTKLFAQASQTAPPVPLTAPSVSTTTLTCQINCD
Ga0308187_101816152	3300031114	Soil	MTRLVLAALVLLNCASFTTKLFAQASQTAPPVPLTAPSVNTTSVTCQINCDTQAMSCQNT
Ga0318516_103722251	3300031543	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQ
Ga0318541_101881242	3300031545	Soil	MPRIVQAALVLLSCTLFATEVFAQSGQVTNPVPLTAPSINTT
Ga0318541_104520442	3300031545	Soil	MKRIVLGALVLVTCVTFATELFAQASQTVNPVPITPPTINTTTLTCQVNCDTQA
Ga0318538_100377821	3300031546	Soil	MKRIVPGALVLVSCVAFATELFAQASQTVNPVPITPPTINTTTTTCQVNCDTQAMLCQNACIPTTAAAQASPAGSGGTV
Ga0318538_101510372	3300031546	Soil	MKRIVPAALVLVTCVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNA
Ga0318571_100205531	3300031549	Soil	MTRIGLAVLVLLNCTAFATEVFAQAGQVTNPVPLTPPTVNTTTTTCQVNCDTQAMN
Ga0318528_100581553	3300031561	Soil	MKRIVPAALVLVTCVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPT
Ga0318528_105583422	3300031561	Soil	MPRIVQAALVLLSCTLFATEVFAQSGQVTNPVPLTAPSINTTTTTCQINCDTVAMTCLNS
Ga0318573_100702791	3300031564	Soil	MKRVVPGALVLVSFVAFATELFAQANQTVNPVPITPPTINTTTTTCQV
Ga0318555_101321192	3300031640	Soil	MPRIVQAALVLLSCTLFATEVFAQSGQVTNPVPLTAPSINTTTTTCQINCDTVAMTCLNSCRPPPRP
Ga0318574_100346751	3300031680	Soil	MKRIVPAALVLVTCVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTTAAAQANPA
Ga0318572_101378831	3300031681	Soil	LLGGNVKRGRLMTRIMLAVLVLLNCTAFATEVFAQSNQVTNPVPLTPPTVNTTTTTCQVN
Ga0318560_100055581	3300031682	Soil	LLGGNVKRGRLMTRIMLAVLVLLNCTAFATEVFAQSNQVTNPVPLTPPTVNTTTTMCQV
Ga0318560_106227501	3300031682	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPPTINTTTLTCQV
Ga0318554_103206452	3300031765	Soil	MKRIVPGALVLVSCVAFATELFAQASQTVNPVPITPPTINTTTTTCQVNCDTQAMLCQ
Ga0318526_101297451	3300031769	Soil	MKRIVPGALVLVSCVAFATELFAQASQTVNPVPITPPTINTTTTTCQVNCDTQAMLCQNACIPTTAAAQASPA
Ga0318521_104656982	3300031770	Soil	MKRIVPAALVLVTCVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTT
Ga0318521_105712782	3300031770	Soil	MTRIVLAALVLLNCTAVATELFAQANQVINPVPLTPPTVNTTTTTCQINCDTQAMNCQNSCIPT
Ga0318543_100461392	3300031777	Soil	MKRIVPGALVLVSCVAFATELFAQASQTVNPVPIT
Ga0318498_104861881	3300031778	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPPTIN
Ga0318547_102465812	3300031781	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTTDAAQANPAA
Ga0318548_101160551	3300031793	Soil	MKRIVPGALVLVSCVAFATELFAQASQTVNPVPITPPTIN
Ga0318548_106610791	3300031793	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPP
Ga0318557_101699291	3300031795	Soil	MKRIVPGALVLVSCVAFATELFAQASQTVNPVPITPPTINTTTTTCQVNCDTQAMLCQNACI
Ga0318499_103128041	3300031832	Soil	MTRIVLAALVLLNCTAVATELFAQANQVINPVPLTPPTVNTTTTTCQVNCDTQAMNCQNACIPTTAAAQAS
Ga0318512_100537172	3300031846	Soil	MKRIVPGALVLVSCVAFATELFAQASQTVNPVPITPPTINTTTTTCQV
Ga0318527_101547511	3300031859	Soil	MKRIVPGALVLVSCVAFATELFAQASQTVNPVPITPPTINTTTTTCQVNCDTQAMLCQNACIPTTAAAQA
Ga0318551_100078995	3300031896	Soil	MTRIGLAVLVLLNCTAFATDVFAQAGQITNPVPLTPPTVNTTTTTCQVNCDTQAMNCQNS
Ga0318520_103896451	3300031897	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTTAA
Ga0310913_108011182	3300031945	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTTAAAQ
Ga0310910_107168122	3300031946	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTTAAA
Ga0310910_111589651	3300031946	Soil	MKRVVPGALVLVSFVAFATELFAQANQTVNPVPITPPTINTTTTTCQVNCDTQAMICQN
Ga0310911_100957493	3300032035	Soil	MKRIVLGALVLVTCVTFATELFAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMIC
Ga0318545_100363483	3300032042	Soil	MTRIVLAALVLLNCTAVATELFAQANQVINPVPLTPPTVNTTTTTCQINCDT
Ga0318558_100238133	3300032044	Soil	MKRIVPGALVLVSCVAFATELFAQASQTVNPVPITPPTINT
Ga0318575_104716272	3300032055	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTTAAAQANP
Ga0318533_101564733	3300032059	Soil	MTRIVLAALVLLNCAAFATEVFAQANQVINPVPLTPPTVNTTTTTCQINCD
Ga0318533_113922071	3300032059	Soil	MKRIVLAALVLVTCVTFATELFAQANQTVTPVPLTPPTVNT
Ga0318505_100719554	3300032060	Soil	MKRIVPAALVLVTCVAFATELLAQASQTVNPVPITPPT
Ga0318510_100854582	3300032064	Soil	MKRIVPGALVLVSCVAFATELFAQASQTVNPVPITPPTINTTTTTCQVNCD
Ga0318513_104697312	3300032065	Soil	MKRIVLAALMLVTCVACATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQAMICQNACIPTTAAAQAN
Ga0318553_101183061	3300032068	Soil	MKRIVPAALVLVTCVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDTQA
Ga0318577_101804641	3300032091	Soil	MKRIVPAALVLVTCVAFATELLAQASQTVNPVPITPPTINTTTLTCQVNCDT
Ga0268251_105057342	3300032159	Agave	MMKRVALIGLVLLSCTCFATELLAQSGQTVTPVPIAPPSLQTTTLTCQVNCD

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060257

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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