NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F060255

Metagenome Family F060255

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F060255
Family Type Metagenome
Number of Sequences 133
Average Sequence Length 56 residues
Representative Sequence VDPALLRREFAHVRHVATFWNGLGVSDDEQGVPIFVATGLRSSWAQAWPAFRDYS
Number of Associated Samples 118
Number of Associated Scaffolds 133

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 4.51 %
% of genes near scaffold ends (potentially truncated) 86.47 %
% of genes from short scaffolds (< 2000 bps) 88.72 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction Yes
3D model pTM-score0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (91.729 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(36.842 % of family members)
Environment Ontology (ENVO) Unclassified
(37.594 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(39.098 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 21.69%    β-sheet: 20.48%    Coil/Unstructured: 57.83%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.64
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 133 Family Scaffolds
PF00005ABC_tran 18.05
PF04314PCuAC 4.51
PF11716MDMPI_N 3.01
PF08044DUF1707 3.01
PF13180PDZ_2 2.26
PF13826DUF4188 2.26
PF02566OsmC 1.50
PF00313CSD 1.50
PF01872RibD_C 1.50
PF01297ZnuA 0.75
PF00106adh_short 0.75
PF03795YCII 0.75
PF08281Sigma70_r4_2 0.75
PF01475FUR 0.75
PF00282Pyridoxal_deC 0.75
PF00440TetR_N 0.75
PF03729DUF308 0.75
PF00982Glyco_transf_20 0.75
PF14216DUF4326 0.75
PF00296Bac_luciferase 0.75
PF00753Lactamase_B 0.75
PF00441Acyl-CoA_dh_1 0.75
PF07311Dodecin 0.75
PF13231PMT_2 0.75
PF00950ABC-3 0.75
PF04237YjbR 0.75

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 133 Family Scaffolds
COG2847Copper(I)-binding proteinInorganic ion transport and metabolism [P] 4.51
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 1.50
COG1764Organic hydroperoxide reductase OsmC/OhrADefense mechanisms [V] 1.50
COG1765Uncharacterized OsmC-related proteinGeneral function prediction only [R] 1.50
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 1.50
COG0076Glutamate or tyrosine decarboxylase or a related PLP-dependent proteinAmino acid transport and metabolism [E] 0.75
COG0380Trehalose-6-phosphate synthase, GT20 familyCarbohydrate transport and metabolism [G] 0.75
COG0609ABC-type Fe3+-siderophore transport system, permease componentInorganic ion transport and metabolism [P] 0.75
COG0735Fe2+ or Zn2+ uptake regulation protein Fur/ZurInorganic ion transport and metabolism [P] 0.75
COG1108ABC-type Mn2+/Zn2+ transport system, permease componentInorganic ion transport and metabolism [P] 0.75
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.75
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.75
COG2315Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR familyTranscription [K] 0.75
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 0.75
COG3247Acid resistance membrane protein HdeD, DUF308 familyGeneral function prediction only [R] 0.75
COG3360Flavin-binding protein dodecinGeneral function prediction only [R] 0.75
COG4606ABC-type enterochelin transport system, permease componentInorganic ion transport and metabolism [P] 0.75

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms91.73 %
UnclassifiedrootN/A8.27 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002907|JGI25613J43889_10125677All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura652Open in IMG/M
3300004152|Ga0062386_101507205All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia560Open in IMG/M
3300005436|Ga0070713_101862838All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia584Open in IMG/M
3300005445|Ga0070708_100892578All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales835Open in IMG/M
3300005450|Ga0066682_10336580All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia973Open in IMG/M
3300005468|Ga0070707_100383245All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1366Open in IMG/M
3300005468|Ga0070707_102252328All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria512Open in IMG/M
3300005471|Ga0070698_100162184All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2179Open in IMG/M
3300005518|Ga0070699_100692673All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria931Open in IMG/M
3300005536|Ga0070697_102012399All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia517Open in IMG/M
3300005602|Ga0070762_10715556All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces673Open in IMG/M
3300005610|Ga0070763_10060161All Organisms → cellular organisms → Bacteria1830Open in IMG/M
3300005712|Ga0070764_10074903All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1773Open in IMG/M
3300005712|Ga0070764_10157230All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1253Open in IMG/M
3300005713|Ga0066905_102175088All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales517Open in IMG/M
3300005764|Ga0066903_106002574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia636Open in IMG/M
3300006052|Ga0075029_101122632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia547Open in IMG/M
3300006162|Ga0075030_101428822Not Available542Open in IMG/M
3300006173|Ga0070716_101772909All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia511Open in IMG/M
3300006176|Ga0070765_100542805All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1094Open in IMG/M
3300009090|Ga0099827_10274371All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1422Open in IMG/M
3300009090|Ga0099827_11929321All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium514Open in IMG/M
3300009093|Ga0105240_11479215All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia712Open in IMG/M
3300009623|Ga0116133_1030301All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1336Open in IMG/M
3300009624|Ga0116105_1097064All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria733Open in IMG/M
3300010046|Ga0126384_10934480All Organisms → cellular organisms → Bacteria785Open in IMG/M
3300010048|Ga0126373_13201640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia510Open in IMG/M
3300010049|Ga0123356_12878562Not Available602Open in IMG/M
3300010359|Ga0126376_12523622All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia562Open in IMG/M
3300010361|Ga0126378_13215207Not Available519Open in IMG/M
3300010366|Ga0126379_12697131All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria594Open in IMG/M
3300010376|Ga0126381_101852347Not Available870Open in IMG/M
3300010379|Ga0136449_100030705All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria13012Open in IMG/M
3300010937|Ga0137776_1515134All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1137Open in IMG/M
3300012189|Ga0137388_11239049All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia684Open in IMG/M
3300012201|Ga0137365_10261773All Organisms → cellular organisms → Bacteria1285Open in IMG/M
3300012202|Ga0137363_11529014All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300012206|Ga0137380_10407484All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1207Open in IMG/M
3300012210|Ga0137378_11502672All Organisms → cellular organisms → Bacteria585Open in IMG/M
3300012357|Ga0137384_10130768All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2101Open in IMG/M
3300012357|Ga0137384_11460547Not Available533Open in IMG/M
3300016294|Ga0182041_10343320All Organisms → cellular organisms → Bacteria1252Open in IMG/M
3300016319|Ga0182033_10082506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales2306Open in IMG/M
3300016341|Ga0182035_10821451All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia816Open in IMG/M
3300016422|Ga0182039_10244147All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1459Open in IMG/M
3300017924|Ga0187820_1153892All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia694Open in IMG/M
3300017928|Ga0187806_1217147All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia653Open in IMG/M
3300017937|Ga0187809_10237032Not Available657Open in IMG/M
3300017940|Ga0187853_10059460All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1941Open in IMG/M
3300017942|Ga0187808_10220563All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium845Open in IMG/M
3300017948|Ga0187847_10024847All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3643Open in IMG/M
3300017955|Ga0187817_10294047All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1036Open in IMG/M
3300017973|Ga0187780_10540696All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia834Open in IMG/M
3300017995|Ga0187816_10074116Not Available1445Open in IMG/M
3300018006|Ga0187804_10016651All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2617Open in IMG/M
3300019887|Ga0193729_1279442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria508Open in IMG/M
3300020580|Ga0210403_10382184All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1151Open in IMG/M
3300021171|Ga0210405_11212392All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia558Open in IMG/M
3300021362|Ga0213882_10090477All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1235Open in IMG/M
3300021388|Ga0213875_10419712All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300021402|Ga0210385_10943826All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria663Open in IMG/M
3300021405|Ga0210387_11471935All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria584Open in IMG/M
3300021407|Ga0210383_10187325All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1767Open in IMG/M
3300021432|Ga0210384_10624996All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria966Open in IMG/M
3300025914|Ga0207671_10760232All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium769Open in IMG/M
3300025922|Ga0207646_10294192All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella1467Open in IMG/M
3300025929|Ga0207664_11942620All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales → Glycomycetaceae → Glycomyces → Glycomyces sambucus511Open in IMG/M
3300026508|Ga0257161_1013769All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1496Open in IMG/M
3300026984|Ga0208732_1002554All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1345Open in IMG/M
3300027855|Ga0209693_10180760All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1040Open in IMG/M
3300027855|Ga0209693_10340949All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia728Open in IMG/M
3300027857|Ga0209166_10130984All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1379Open in IMG/M
3300027879|Ga0209169_10006381All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6762Open in IMG/M
3300028796|Ga0307287_10314306All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria592Open in IMG/M
3300028906|Ga0308309_10019182All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium4480Open in IMG/M
3300029919|Ga0302141_1206093All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia534Open in IMG/M
3300029988|Ga0302190_10352251All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria567Open in IMG/M
3300031231|Ga0170824_103137948All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1038Open in IMG/M
3300031544|Ga0318534_10005901All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae5833Open in IMG/M
3300031545|Ga0318541_10679388All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces575Open in IMG/M
3300031545|Ga0318541_10737937All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia550Open in IMG/M
3300031546|Ga0318538_10058233All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1910Open in IMG/M
3300031546|Ga0318538_10729333All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia538Open in IMG/M
3300031561|Ga0318528_10269848All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia913Open in IMG/M
3300031564|Ga0318573_10457228All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia687Open in IMG/M
3300031564|Ga0318573_10538813All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria629Open in IMG/M
3300031573|Ga0310915_11191278All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria527Open in IMG/M
3300031668|Ga0318542_10714265All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria524Open in IMG/M
3300031680|Ga0318574_10575321All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria660Open in IMG/M
3300031682|Ga0318560_10287278Not Available886Open in IMG/M
3300031682|Ga0318560_10567332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia615Open in IMG/M
3300031708|Ga0310686_113752147Not Available621Open in IMG/M
3300031708|Ga0310686_117874712All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1036Open in IMG/M
3300031713|Ga0318496_10139350All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1320Open in IMG/M
3300031713|Ga0318496_10265775All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria946Open in IMG/M
3300031744|Ga0306918_11146488All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia601Open in IMG/M
3300031747|Ga0318502_10189047All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1188Open in IMG/M
3300031768|Ga0318509_10142233All Organisms → cellular organisms → Bacteria1320Open in IMG/M
3300031778|Ga0318498_10310171All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300031779|Ga0318566_10263981All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia853Open in IMG/M
3300031792|Ga0318529_10009355All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3594Open in IMG/M
3300031795|Ga0318557_10103535All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1261Open in IMG/M
3300031799|Ga0318565_10252843All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria857Open in IMG/M
3300031821|Ga0318567_10503324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria688Open in IMG/M
3300031845|Ga0318511_10456265All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria589Open in IMG/M
3300031846|Ga0318512_10742350All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia504Open in IMG/M
3300031897|Ga0318520_10352639All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia893Open in IMG/M
3300031910|Ga0306923_10934781Not Available947Open in IMG/M
3300031941|Ga0310912_11539957All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria500Open in IMG/M
3300031947|Ga0310909_11523236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia532Open in IMG/M
3300031954|Ga0306926_10093605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3675Open in IMG/M
3300031962|Ga0307479_10872686All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria873Open in IMG/M
3300032010|Ga0318569_10021159All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2616Open in IMG/M
3300032043|Ga0318556_10034216All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2384Open in IMG/M
3300032043|Ga0318556_10277639All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia875Open in IMG/M
3300032044|Ga0318558_10387897All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria695Open in IMG/M
3300032054|Ga0318570_10204336All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia892Open in IMG/M
3300032055|Ga0318575_10521566All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia603Open in IMG/M
3300032064|Ga0318510_10114466All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1039Open in IMG/M
3300032065|Ga0318513_10213282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia932Open in IMG/M
3300032065|Ga0318513_10499159Not Available595Open in IMG/M
3300032066|Ga0318514_10126140All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1315Open in IMG/M
3300032067|Ga0318524_10039246All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales2219Open in IMG/M
3300032067|Ga0318524_10713436All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria529Open in IMG/M
3300032068|Ga0318553_10205788All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1026Open in IMG/M
3300032076|Ga0306924_10496118All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1391Open in IMG/M
3300032089|Ga0318525_10303613All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia820Open in IMG/M
3300032160|Ga0311301_10605577All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1577Open in IMG/M
3300032180|Ga0307471_100726880All Organisms → cellular organisms → Bacteria1158Open in IMG/M
3300032205|Ga0307472_101403122All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales677Open in IMG/M
3300032205|Ga0307472_102188427All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300032895|Ga0335074_10252358All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2074Open in IMG/M
3300033134|Ga0335073_10342263All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1775Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil36.84%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.77%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil6.77%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.02%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment5.26%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.51%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.01%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.01%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.50%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.50%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.50%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.50%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.50%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.50%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog1.50%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.50%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.75%
SedimentEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment0.75%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.75%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.75%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.75%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.75%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.75%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.75%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.75%
Exposed RockEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock0.75%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut0.75%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.75%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002907Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cmEnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009623Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10EnvironmentalOpen in IMG/M
3300009624Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010049Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3Host-AssociatedOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010937Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300017940Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300019887Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021362Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09EnvironmentalOpen in IMG/M
3300021388Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8Host-AssociatedOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026508Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-AEnvironmentalOpen in IMG/M
3300026984Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029919Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2EnvironmentalOpen in IMG/M
3300029988Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_3EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032064Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25613J43889_1012567713300002907Grasslands SoilAADTAAIAVNVDPALLRREFSRVRLVAIFRNGLGVSDDEQGARIFLATGLKSAWSHVWPTFRNYS*
Ga0062386_10150720513300004152Bog Forest SoilPPRYLRREFAHVRQIGTFHNGLGVADDEQGTRLYLATGLRTSWARAWRAFRYYG*
Ga0070713_10186283813300005436Corn, Switchgrass And Miscanthus RhizosphereSFLRREFRHVRQIATFYNGLGVSDDEQGAAVYLATGLRESWARAWPAFRDYA*
Ga0070708_10089257813300005445Corn, Switchgrass And Miscanthus RhizospherePPPAADTAAIAVNIDPALLRREFSRVRLVAIFRNGLGVSDDEQGARIFLATGLKSAWSRAWLAFRNYS*
Ga0066682_1033658013300005450SoilLDPAFLHREFRHVRLVATYWNGLGVSDDEQGARVFVATGLRSAWAQAWPAFRDYG*
Ga0070707_10038324533300005468Corn, Switchgrass And Miscanthus RhizosphereALLRREFTSVHLVAIFRNGLGVSDDEQGAQIFLATGLKSTWSRAWPAFLDYS*
Ga0070707_10225232813300005468Corn, Switchgrass And Miscanthus RhizosphereSAIAINLDPSFLRLEFRHVRQIATFYNGLGVNDDEQGAAVYLATGLRESWARAWPAFRDYA*
Ga0070698_10016218433300005471Corn, Switchgrass And Miscanthus RhizosphereLLREFRHVRLVATFWNGLGVSDDEEGVPIYEATGLRSSWVRAWPAFRNYS*
Ga0070699_10069267333300005518Corn, Switchgrass And Miscanthus RhizosphereTAAIAVGVDPALLHREFAYVRHIATFWNGLAVNDDEQGAQIFLATGLKSSWARSWPAFRNYS*
Ga0070697_10201239923300005536Corn, Switchgrass And Miscanthus RhizosphereLRREFTTVRLVAIFRNGLGVRDDEQGARIYLATGLRASWSGAWLDFRNYS*
Ga0070762_1071555623300005602SoilAAIAVNLDPAFLRREFRHVRLVATYWNGLGVSDDEQGAQVFAVTGLRSSWAQAWPAFRNYG*
Ga0070763_1006016123300005610SoilMDPALLRREFAQVRLVATYWNGLGVSDDEQGVQIFVATGPRSSWARAWPAFRNYS*
Ga0070764_1007490313300005712SoilGDDAVIAVNVDPALLRREFAQVRFVATFWNGLGVSDDEQGVQIFVATSARSSWAQAWPAFRNYS*
Ga0070764_1015723033300005712SoilARDTDAIAVDVDPALLRREYASVRRIGTFENGLGVRDDEEGAPIYLATGLRTGWGRAWAAFRNYS*
Ga0066905_10217508823300005713Tropical Forest SoilIAVNLDPAFLRREFAHVRLVATFWNGMGVSDDEQGVQVFVATGLKSPWSQSWPAFRDYS*
Ga0066903_10600257423300005764Tropical Forest SoilGFLHREFRHVRLAATFWNGLGVSDDEQGAPVFVVSGLRSSWARAWPAFRNYS*
Ga0075029_10112263213300006052WatershedsSAVAVNVDPALLRREFAHVRLVATFWNGLGVSDDEQGAQIFIATGLKSSWAQAWPAFRNYS*
Ga0075030_10142882213300006162WatershedsAIAVNVNPALLRREFTRVRLVATFWNGVGVSDDEQGAQVFLASGLRSSWSQAWPSFRDYS
Ga0070716_10177290913300006173Corn, Switchgrass And Miscanthus RhizosphereFLHREFRHVRLAATFWNGLGVSDDEQGVQVFVVTGLRTSWTQAWPAFRHFS*
Ga0070765_10054280513300006176SoilALLRREFAQVRLVATFWNGLGVSDDEQGAQIFVATGLRSSWAQAWPAFRNYS*
Ga0099827_1027437113300009090Vadose Zone SoilDPAFLHREFRQVRPAATFWNGLGVSDDEQGARVYVATGLRSSWAKAWPAFQDYS*
Ga0099827_1192932113300009090Vadose Zone SoilDPAFLHREFRQVRPAATFWNGLGVSDDEQGARVYVATGLRSSWARAWPAFRNYG*
Ga0105240_1147921523300009093Corn RhizosphereRREFAHVRRVATFWIGLGVDDDEQGVPVYLATGLRTSWSRAWPAFREYG*
Ga0116133_103030133300009623PeatlandVHLDGRLRREFTHVQRVATFWNGLGVSDDEQGVPVYLATGLKSSWARAWPAFRGYF*
Ga0116105_109706423300009624PeatlandMMPVSQPNPQAIAVNVDLALLHREFADVRQVATFWNGLAVDDEQGVPVYLATGLKSSWARAWPAFRDYG*
Ga0126384_1093448013300010046Tropical Forest SoilIDPALLHREFSRVRQIGIFQNGLGVSDDEQGTRIYLVTGLRLSWSRAWHAFRNYS*
Ga0126373_1320164023300010048Tropical Forest SoilFLHREFRHVRLVGMFWNGLGVSDDEQGMPVYVATGLRSAWAQAWPAFRHYG*
Ga0123356_1287856233300010049Termite GutRREFRTVRLVATYFNGLGVSDDEEGVQIYVATGLRSSWASAWPAFRDYA*
Ga0126376_1252362223300010359Tropical Forest SoilPAFLHREFRHVRLVATFWNGLGVSDDEQGVPVFVATGLRSSWAQAWPAFRHYG*
Ga0126378_1321520723300010361Tropical Forest SoilFLHREFQHVRLAATFWNGLGVSDDEQGVQVFVVTGLRSSWAQAWPAFRHFS*
Ga0126379_1269713113300010366Tropical Forest SoilPALLHREFAHVRHIATFWNGLGVSDDEQGAQVFLATGLKSSWPRAWPAFRDYS*
Ga0126381_10185234713300010376Tropical Forest SoilPAFLHREFRHVRLAATFWNGLGVSDDEQGAQVFVVTGLRTSWAQAWPAFRHFS*
Ga0136449_10003070583300010379Peatlands SoilVNVDPALLRREFRQVRLVATFWNGLGVSDDEEGAQIFLATGLRSSWARDWAAFRDYS*
Ga0137776_151513413300010937SedimentLHREFRHVRLVATFWNGLGVSDDEQGAQVFVATGPRSAWAQAWPAFRNYG*
Ga0137388_1123904913300012189Vadose Zone SoilLLHREFARVRRIATFRNGIGVSDDEQGAPIYLATGLKTSWADAWPAFRDYS*
Ga0137365_1026177323300012201Vadose Zone SoilMDPAFLRREFADVRLVATFWNGLGVSDDEQGARIFIVSGPRSAWAAAWPAFRHYS*
Ga0137363_1152901423300012202Vadose Zone SoilDTAAIAVNIDPALLRREFSRVRLVAIFRNGLGVSDDEQGARIFLATGLKSAWSHVWPTFRNYS*
Ga0137380_1040748443300012206Vadose Zone SoilSAAVAVNIDPALLRREFTHVRRVATFWNGLGISDDEQGAQIYIATGLKSSWAQAWAAFRDYS*
Ga0137378_1150267223300012210Vadose Zone SoilDTAAIVINVDPALLRRDFARVRLVATFRNGLGVSDDEQGAQIFFAAGLRMSWADAWPAFRDYS*
Ga0137384_1013076813300012357Vadose Zone SoilALLRRDFARVRLVATFRNGLGVSDDEQGAQIFIAAGLRTSWADAWPAFRDYS*
Ga0137384_1146054723300012357Vadose Zone SoilPAFLHREFTHVQQVATFGNGLGVSDDEQGARIFVVSGLRSTWQEAWPAFRDYS*
Ga0182041_1034332013300016294SoilVDPALLHREFTHVRHIATFWNGLGVSDDEQGAQVFLATGLKSSWPHAWPAFRDYS
Ga0182033_1008250613300016319SoilPPPAADSSAVAVNVDPALLRREFAHVRLVGTFWNGLGVSDDEQGVQVFLASGLRSSWTHAWRAFRDYS
Ga0182035_1082145113300016341SoilLLHREFAHVRHVATFWNGLGVSDDEQGAAIFVATGLRLSWAQAWPAFRDYS
Ga0182039_1024414713300016422SoilLHREFRHVRLVATFWNGLGVSDDEQGAQIFVTTGLRSSWAQAWPAFRNYG
Ga0187820_115389223300017924Freshwater SedimentEFTRVRLVAPLWHGLGDGADEQGAQVFLATGLRSPWSQAWPAFRNYS
Ga0187806_121714713300017928Freshwater SedimentPPAADTAVVAVNVNPALLHREFAHVRLVATFRNGLGVSDDEQGVEIFVATGLRSPWVQSWAAFRAYS
Ga0187809_1023703223300017937Freshwater SedimentVNLDPAFLRREFAHVRLVATFSNGLGVSDDEQGAQIFVATGLRSSWAQAWPAFRDYS
Ga0187853_1005946043300017940PeatlandVHLDGRLRREFTHVQRVATFWNGLGVSDDEQGVPVYLATGLKSSWARAWPAFRGYF
Ga0187808_1022056323300017942Freshwater SedimentADTSAIAVNMNPALLRREFAHVHLIATFWNGLGVSDDEEGAQIFLATGLRYSWARAWPAFRDYS
Ga0187847_1002484733300017948PeatlandVHLDGRLRREFTHVQRVATFCNGLGVSDDEQGVPVYLATGLKSSWARAWPAFRGYF
Ga0187817_1029404723300017955Freshwater SedimentMARPARPPPAGARSVIAVNVDPALLRREFARVRLVATFWNGLGVSDDEQGAQIFVATGLRSSWAQAWPAFRDYS
Ga0187780_1054069613300017973Tropical PeatlandDRSAIAVNVDPALLRREFSHVRLVATFWNGLGVSDDEQGVQVFLATGLRPTWAQAWAAFRDYS
Ga0187816_1007411613300017995Freshwater SedimentADTAVVAVNVNPALLHREFAHVRLVATFRNGLGVSDDEQGVEIFVATGLRSPWVQSWAAFRAYS
Ga0187804_1001665113300018006Freshwater SedimentLLRREFAHVLLVATFRNGLGVSDDEQGAQVFVATGLRSSWAQAWSAFRNYS
Ga0193729_127944223300019887SoilVNIDPALLRREFTHVRRVATFWNGLGVSDDEQGAQIYVATGLKSSWAQAWPAFRDYS
Ga0210403_1038218433300020580SoilAIAVNMDPAFLHREFAHVRRVATFWNGMGVSDDEQGVQIFVATGPKTPWSRSWPAFRNYS
Ga0210405_1121239223300021171SoilAVIGVNMDPALLRREFAQVRLVATYWNGLGVSDDEQGVQIFVATGPRSSWARAWPAFRNY
Ga0213882_1009047713300021362Exposed RockPAADSAAIAVNLDPALLRAWFAHVRLVATFSNGLGVSDDEQGAQVYLVTGLKSSWACAWPAFRDYS
Ga0213875_1041971213300021388Plant RootsLAPAFLRREFRQVRRVATSWNGLGVADDEQGVAVYLATGLRSPWSRSWPAFRDYS
Ga0210385_1094382623300021402SoilRSAIAINLDPSFLRREFRHVRQIATFYNGLGVKDDEQGAPVYLATGLRESWARAWPAFRDYA
Ga0210387_1147193513300021405SoilDPAFLRREFRHVRLVATYWNGLGVSDDEQGAQVFAATGLRSSWAQAWPAFRNYG
Ga0210383_1018732523300021407SoilMDPALLRREFAQVRLVATYWNGLGVSDDEQGVQIFVATGPRSSWARAWPAFRNYS
Ga0210384_1062499613300021432SoilREFARVRLLATFWNGLGVDDDEQGAPVFLATGLRPSWRQAWPAFRDYA
Ga0207671_1076023223300025914Corn RhizosphereEFAHVRQVATFTNGLEVSDDEQGAPIYLATGLHGSWSHAWPAFRDYS
Ga0207646_1029419233300025922Corn, Switchgrass And Miscanthus RhizospherePALLRREFTSVHLVAIFRNGLGVSDDEQGAQIFLATGLKSTWSRAWPAFLDYS
Ga0207664_1194262013300025929Agricultural SoilRREFADVRQIATFWNGLGVDDDEQGVPVYLATGLKTSWAKAWPAFRDYS
Ga0257161_101376913300026508SoilVNVNPALLRREFAHVRLAATFWNGLGVSDDEQGARIYIATGLKAPWVRAWPAFRDYS
Ga0208732_100255433300026984Forest SoilPPPAGDDAVIAVNVDPALLRREFAQVRLVATFWNGLGVSDDEQGAQIFVATGLRSSWAQAWPAFRNYS
Ga0209693_1018076013300027855SoilRREFAQVRLVATFWNGLGVSDDEQGAQIFVATGPRSSWAQAWPAFRNYS
Ga0209693_1034094913300027855SoilRREFAQVRLVATFWNGLGVSDDEQGAQIFVATGLRSSWAQAWPAFRNYS
Ga0209166_1013098433300027857Surface SoilPPPAADTAAIAVNVNPALLRREFTQVRLVATFWNGVGVSDDEQGAQVFLATGLRSSWSQAWPAFRDYS
Ga0209169_1000638113300027879SoilPPAGDDAVIAVNVDPALLRREFAQVRFVATFWNGLGVSDDEQGVQIFVATSARSSWAQAWPAFRNYS
Ga0307287_1031430613300028796SoilDSAAIAVNVDPALLRREFAHVRRVATFWNCLGVDDDEQGAPVYLATGLRTSWSRAWPAFREYA
Ga0308309_1001918213300028906SoilREFADVRQVATFWNGLGVSDDEQGVRVFLATGLRTSWAQAWPTFRDYS
Ga0302141_120609323300029919BogADVHLDGRLRREFTHVQRVATFWNGLGVSDDEQGVPVYLATGLKSSWARAWPAFRGYF
Ga0302190_1035225113300029988BogVHLDGRLRREFTHVQRVATFWNGLGVSDDEQGVPVYLATGLKSSWARAWPAF
Ga0170824_10313794833300031231Forest SoilEFRQVRLVATFWNGLGVSDDEEGAQIFVATGLRSSWAKAWPAFRDYA
Ga0318534_1000590163300031544SoilVNVDPALLRREFAHVRLVGTFWNGLGVSDDEQGVQVFLASGLRSSWTHAWPAFRDYS
Ga0318541_1067938823300031545SoilAFLHREFRHVRLVATFWNGLGVSDDEQGAQIFVTTGLRSSWAQAWPAFRNYG
Ga0318541_1073793723300031545SoilRAPLRREFAHVRHVAAFWNVRDEEQDAPIFIATGLRSSWAQAWPAFRDYSWPRVLYGP
Ga0318538_1005823313300031546SoilLDPAFLRHEFAHVRLVATFWNGLGVSDDEQGTQVYLATGLKSSWAQAWPAFRDYS
Ga0318538_1072933323300031546SoilALLRREFAHVRHVATFWNGLGVSDDEQGVPIFVATGLRSSWAQAWPAFRDYS
Ga0318528_1026984813300031561SoilAADTAAIAVNLDPAFLHREFRHVRLVATFWNGLGVSDDEQGVQVFLASGLRSSWTHAWPAFRDYS
Ga0318573_1045722823300031564SoilDSAAIAVNVDPAFLHREFAHVRLVATFWNGLGVSDDEQGAQVFLATGLKSSWARTWPAFRNYS
Ga0318573_1053881323300031564SoilGPPPAADTAAVAVNLNPAFLHREFRHVRLVATFWNGLGVSDDEQGAQIFVTTGLRSSWAQAWPAFRNYG
Ga0310915_1119127813300031573SoilVNVDPALLRREFAHVRLVGTFRNGLGVSDDEQGVQVFLASGLRSSWTHAWRAFRDYS
Ga0318542_1071426523300031668SoilVNVDPALLRREFAHVRLVGTFWNGLGVSDDEQGVQVFLASGLRSSWTHAWRAFRDYS
Ga0318574_1057532123300031680SoilVNVDPALLRREFAHVRLVGTFRNGLGVSDDEQGVQVFLASGLRSSWTHAWPAFRDYS
Ga0318560_1028727813300031682SoilFQHVRLAATFWNGLGVSDDEQGAQVFVVTGLRTSWARAWPRFRHFG
Ga0318560_1056733213300031682SoilPAFLRREFAHVRRVATFWNGMGVSDDEQGVPVFVVTGLKTPWSRSWAAFRNYS
Ga0310686_11375214713300031708SoilVNIDPALLRREFIHVRLVATFWNGQGVSDDEQGAQIFLATGLKSRWAQAWPAFRYYS
Ga0310686_11787471213300031708SoilPAADTDAIAVNVDPALLRREFSTVRLIAIFRNGLGVSDDEQGAQVFLATGLRSTWAHSWLAFRNYS
Ga0318496_1013935013300031713SoilRAAIAVNVDPILLHREFAHVRRVATFWNGLGVGDDEQGVPVFIATGLRSSWAQAWPAFRNYS
Ga0318496_1026577513300031713SoilVDPALLRREFAHVRHVATFWNGLGVSDDEQGVPIFVATGLRSSWAQAWPAFRDYS
Ga0306918_1114648813300031744SoilREFAHVRLVGTFWNGLGVSDDEQGVQVFLASGLRSSWTHAWRAFRDYS
Ga0318502_1018904713300031747SoilIAVNVDPALLRREFAHVRQVATFWNGLGVSDDEQGAAIFVATGLRWSWAQAWPAFRDYS
Ga0318509_1014223333300031768SoilNLDPAFLRHEFAHVRLVATFWNGLGVSDDEQGTQVYLATGLKSSWAQAWPAFRDYS
Ga0318498_1031017113300031778SoilAIAVNQDPAFLHREFRHVRRAATFWNGLGVSDDEQGVPVFVATGLRSSWARAWPAFRDYS
Ga0318566_1026398123300031779SoilLLRREFAHVRHVATFWNGLGVSDDEQGAAIFVATGLRWSWAQAWPAFRDYS
Ga0318529_1000935513300031792SoilLHREFRHVRRAATFWNGLGVSDDEQGVPVFVATGLRSSWARDWPAFRNYS
Ga0318557_1010353513300031795SoilFLHREFRHVRRAATFWNGLGVSDDEQGVPVFVATGLRSSWARAWPAFRDYS
Ga0318565_1025284313300031799SoilFLHREFRHVRLVATFWNGIGVSDDEQGMPVYLATGLRSTWAQAWPAFRNYG
Ga0318567_1050332413300031821SoilVNVDPALLRREFAHVRLVGTFWNGLGVSDDEQGVQVFLASGLRSSWTHAWPAFRDY
Ga0318511_1045626533300031845SoilVNVDPALLRREFAHVRLVGTFRNGLGVSDDEQGVQVFLASGLRSSWTHACRA
Ga0318512_1074235013300031846SoilVNADPAFLRREFAHVRLVATFWNGLGVSDDEQGAQVFLATGLKSSWARTWPAFRNYS
Ga0318520_1035263913300031897SoilFTQVRQVATFWNGLGVSDDEQGAAIFVATGLKSSWAQAWPAFSNYS
Ga0306923_1093478123300031910SoilNLDPALLHREFRHVRLAATFWNGLGVSDDEQGVPVFVVTGLRSSWVRDWPGFRNYG
Ga0310912_1153995723300031941SoilNLNPAFLHREFRHVRLVATFWNGLGVSDDEQGAQIFVTTGLRSSWAQAWPAFRNYG
Ga0310909_1152323623300031947SoilRREFAHVRQAATFWNGLGVGDDEQGVPVFVATGLRSSWAQAWPAFRDYS
Ga0306926_1009360513300031954SoilEFRHVRRAATFWNGLGVSDDEQGVPVFVATGLRSSWARAWPAFRDYS
Ga0307479_1087268623300031962Hardwood Forest SoilVNVDPALLRREFAQVRLVARFWNGLGVSDDEQGAQIFVATGPRSSWAQAWPAFRNYS
Ga0318569_1002115953300032010SoilVNVDPRLLHREFVHVRQVATFWNGLGVSDDEQGATIFVATGLRSSWAQAWPAFRDYS
Ga0318556_1003421643300032043SoilEFRHVRRVATFWNGLGVSDDEQGVPVFVATGLRSSWARDWPAFRNYS
Ga0318556_1027763913300032043SoilPGLLHREFVHVRQVATFWNGLGVSDDEQGATIFVATGLRSSWAQAWPAFRDYS
Ga0318558_1038789733300032044SoilMDPAFLRHEFAHVRRVATFWNGMGVSDDEQGVPVFVATGLKTSWSRSWPAFRDYS
Ga0318570_1020433613300032054SoilVNVDPALLRREFAHVRLVVTFRNGLGVSDDEQGVQVFLASGLRSSWTHAWPAFRDYS
Ga0318575_1052156613300032055SoilDSSAVAVNVDPALLRREFAHVRLVGTFRNGLGVSDDEQGVQVFLASGLRSSWTHAWRAFRDYS
Ga0318510_1011446623300032064SoilSSAVAVNVDPALLRREFAHVRLVGTFWNGLGVSDDEQGVQVFLASGLRSSWTHAWPAFRDYS
Ga0318513_1021328223300032065SoilFLHREFAHVRLVATFWNGLGVSDDEQGAQVFLATGLKSSWARTWPAFRNYS
Ga0318513_1049915913300032065SoilPTFLHQEFRHVRLAATFWNGLGVSDDEQGAQVFVVTGLRTSWAQAWPAFRHFS
Ga0318514_1012614033300032066SoilLLRREFAHVRQAATFWNGLGVGDDEQGVPVFVATGLRSSWAQAWPAFRDYS
Ga0318524_1003924613300032067SoilALLRREFAHVRLVGTFWNGLGVSDDEQGVQVFLASGLRSSWTHAWPAFRDYS
Ga0318524_1071343613300032067SoilVIAVNVDPRLLHREFVHVRQVATFWNGLGVSDDEQGATIFVATGLRSSWAQAWPAFRDYS
Ga0318553_1020578823300032068SoilGTVIAVNVDPGLLHREFAHVRHVATFWNGLGVSDDEQGAAIFVATGLRWSWAQAWPAFRDYS
Ga0306924_1049611813300032076SoilRREFAQVRLVATFWNGLGVNDDEQGTQVYLATGLKSSWAQAWPAFRDYS
Ga0318525_1030361313300032089SoilRREFGAVRLVATFRNGLGVSDDEQGAPVFVATGLRSSWAQAWAAFRNYS
Ga0311301_1060557743300032160Peatlands SoilIAVNVDPALLRREFTRVRLVATFRNGLGVSDDEQGAQVFIATGLRSSWAQAWPAFRNYS
Ga0307471_10072688023300032180Hardwood Forest SoilVNIDPGLLRSEFAHVRTVATFWNGLGIPDQEQGVQIHAATGLRHTWAVAWPAFRHYD
Ga0307472_10140312213300032205Hardwood Forest SoilVRHDRLLRREFARVRRVATFWNGLGVDDDEQGAPVYLATGLRTSWSRAWPA
Ga0307472_10218842723300032205Hardwood Forest SoilADSAAIAVNLGPAFLRREFAHVRLVATFWNGMGVSDDEQGVQVFLATGLKTPWPQSWPAFRDYS
Ga0335074_1025235843300032895SoilVNVYPAVLNREFTHVRVVATFWNGLGVSDDEQGLKIYLATGLRASWAQAWPAIRSYA
Ga0335073_1034226323300033134SoilMDPAFLRHEFAHVSRVATFWNGLGVSDDEQGVGIYLATGLRSSWERSWPSFRDYS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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