Metagenome Family F060179

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060179
Family Type	Metagenome
Number of Sequences	133
Average Sequence Length	44 residues
Representative Sequence	MSATPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATS
Number of Associated Samples	91
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	98.50 %
% of genes from short scaffolds (< 2000 bps)	91.73 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.398 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (52.632 % of family members)
Environment Ontology (ENVO)	Unclassified (81.203 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (51.128 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.17% β-sheet: 0.00% Coil/Unstructured: 47.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF04255	DUF433	8.27
PF00536	SAM_1	7.52
PF08883	DOPA_dioxygen	3.01
PF09720	Unstab_antitox	3.01
PF02604	PhdYeFM_antitox	2.26
PF08028	Acyl-CoA_dh_2	2.26
PF12441	CopG_antitoxin	2.26
PF04392	ABC_sub_bind	1.50
PF13384	HTH_23	1.50
PF04828	GFA	1.50
PF03976	PPK2	0.75
PF04365	BrnT_toxin	0.75
PF01979	Amidohydro_1	0.75
PF05685	Uma2	0.75
PF12833	HTH_18	0.75
PF14384	BrnA_antitoxin	0.75
PF02826	2-Hacid_dh_C	0.75
PF00378	ECH_1	0.75
PF04909	Amidohydro_2	0.75
PF13533	Biotin_lipoyl_2	0.75
PF13751	DDE_Tnp_1_6	0.75
PF13450	NAD_binding_8	0.75
PF02518	HATPase_c	0.75
PF08241	Methyltransf_11	0.75
PF07690	MFS_1	0.75
PF03773	ArsP_1	0.75
PF00216	Bac_DNA_binding	0.75
PF13185	GAF_2	0.75
PF00561	Abhydrolase_1	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	8.27
COG3805	Aromatic ring-cleaving dioxygenase	Secondary metabolites biosynthesis, transport and catabolism [Q]	3.01
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	2.26
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	2.26
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	2.26
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.50
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.50
COG0701	Uncharacterized membrane protein YraQ, UPF0718 family	Function unknown [S]	0.75
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.75
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.75
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.75
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.40 %
Unclassified	root	N/A	40.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.40 %
Unclassified	root	N/A	40.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.40 %
Unclassified	root	N/A	40.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.10 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34.59 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.03 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.75 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.01 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.75 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.75 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.01 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.75 %
Aquabacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Aquabacter	0.75 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.01 %
Aquabacter spiritensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Aquabacter → Aquabacter spiritensis	0.75 %
Bradyrhizobium arachidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	0.75 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	0.75 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.75 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.75 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.75 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.01 %
Bradyrhizobium sp. URHA0002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	0.75 %
Aquabacter spiritensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Aquabacter → Aquabacter spiritensis	0.75 %
Bradyrhizobium arachidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	0.75 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	0.75 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.75 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.75 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10224848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	995	Open in IMG/M
3300005435\|Ga0070714_102433040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	509	Open in IMG/M
3300005468\|Ga0070707_101006891	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300005536\|Ga0070697_101821347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	545	Open in IMG/M
3300006176\|Ga0070765_100036266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3899	Open in IMG/M
3300009792\|Ga0126374_11489781	Not Available	555	Open in IMG/M
3300010048\|Ga0126373_11857232	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300010358\|Ga0126370_11258106	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300010360\|Ga0126372_12448106	Not Available	573	Open in IMG/M
3300010361\|Ga0126378_11186278	Not Available	862	Open in IMG/M
3300010376\|Ga0126381_102036103	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300012971\|Ga0126369_11145652	All Organisms → cellular organisms → Bacteria → Proteobacteria	867	Open in IMG/M
3300016270\|Ga0182036_10680201	Not Available	831	Open in IMG/M
3300016270\|Ga0182036_11793612	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300016294\|Ga0182041_10686975	Not Available	906	Open in IMG/M
3300016294\|Ga0182041_11080454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	728	Open in IMG/M
3300016319\|Ga0182033_10513011	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300016319\|Ga0182033_12113880	Not Available	514	Open in IMG/M
3300016341\|Ga0182035_10679968	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300016341\|Ga0182035_11271556	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300016341\|Ga0182035_11912752	Not Available	538	Open in IMG/M
3300016357\|Ga0182032_10084688	All Organisms → cellular organisms → Bacteria	2189	Open in IMG/M
3300016371\|Ga0182034_10397657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1130	Open in IMG/M
3300016371\|Ga0182034_10958625	Not Available	738	Open in IMG/M
3300016371\|Ga0182034_11707598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Aquabacter → Aquabacter spiritensis	554	Open in IMG/M
3300016404\|Ga0182037_10058120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2619	Open in IMG/M
3300016404\|Ga0182037_10525607	Not Available	995	Open in IMG/M
3300016404\|Ga0182037_11110114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	692	Open in IMG/M
3300016404\|Ga0182037_12081712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300016404\|Ga0182037_12164217	Not Available	501	Open in IMG/M
3300016422\|Ga0182039_11881486	Not Available	549	Open in IMG/M
3300016445\|Ga0182038_10705559	Not Available	879	Open in IMG/M
3300016445\|Ga0182038_10930185	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300017995\|Ga0187816_10484191	Not Available	556	Open in IMG/M
3300020583\|Ga0210401_10623074	All Organisms → cellular organisms → Bacteria → Proteobacteria	940	Open in IMG/M
3300021168\|Ga0210406_10765337	Not Available	738	Open in IMG/M
3300021476\|Ga0187846_10130558	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300021478\|Ga0210402_11056005	Not Available	739	Open in IMG/M
3300021560\|Ga0126371_10160848	All Organisms → cellular organisms → Bacteria	2315	Open in IMG/M
3300021560\|Ga0126371_10431891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1462	Open in IMG/M
3300021560\|Ga0126371_10543822	Not Available	1310	Open in IMG/M
3300021560\|Ga0126371_11366219	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300021560\|Ga0126371_11640754	Not Available	768	Open in IMG/M
3300021560\|Ga0126371_13337344	Not Available	542	Open in IMG/M
3300031543\|Ga0318516_10145693	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300031544\|Ga0318534_10416063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	771	Open in IMG/M
3300031544\|Ga0318534_10484116	Not Available	707	Open in IMG/M
3300031545\|Ga0318541_10161000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1235	Open in IMG/M
3300031545\|Ga0318541_10550017	Not Available	646	Open in IMG/M
3300031545\|Ga0318541_10819677	Not Available	519	Open in IMG/M
3300031564\|Ga0318573_10751237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300031572\|Ga0318515_10381376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	755	Open in IMG/M
3300031573\|Ga0310915_11111064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300031573\|Ga0310915_11221082	Not Available	519	Open in IMG/M
3300031573\|Ga0310915_11287493	Not Available	504	Open in IMG/M
3300031668\|Ga0318542_10053045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1847	Open in IMG/M
3300031679\|Ga0318561_10203658	Not Available	1074	Open in IMG/M
3300031679\|Ga0318561_10813015	Not Available	513	Open in IMG/M
3300031682\|Ga0318560_10198541	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300031718\|Ga0307474_11314331	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300031719\|Ga0306917_10406766	Not Available	1063	Open in IMG/M
3300031719\|Ga0306917_10985288	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300031719\|Ga0306917_11067279	Not Available	629	Open in IMG/M
3300031723\|Ga0318493_10414374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	738	Open in IMG/M
3300031736\|Ga0318501_10416101	Not Available	727	Open in IMG/M
3300031736\|Ga0318501_10452779	Not Available	697	Open in IMG/M
3300031744\|Ga0306918_10040768	All Organisms → cellular organisms → Bacteria	3017	Open in IMG/M
3300031744\|Ga0306918_11182805	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300031751\|Ga0318494_10642973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	620	Open in IMG/M
3300031751\|Ga0318494_10734796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	578	Open in IMG/M
3300031768\|Ga0318509_10837475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300031771\|Ga0318546_10416391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	939	Open in IMG/M
3300031778\|Ga0318498_10424005	Not Available	590	Open in IMG/M
3300031779\|Ga0318566_10532594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574	Open in IMG/M
3300031781\|Ga0318547_11089155	Not Available	500	Open in IMG/M
3300031782\|Ga0318552_10363547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	737	Open in IMG/M
3300031782\|Ga0318552_10681833	Not Available	524	Open in IMG/M
3300031792\|Ga0318529_10602083	Not Available	510	Open in IMG/M
3300031793\|Ga0318548_10011443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3502	Open in IMG/M
3300031796\|Ga0318576_10187515	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300031797\|Ga0318550_10304274	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300031797\|Ga0318550_10647395	Not Available	507	Open in IMG/M
3300031798\|Ga0318523_10220671	Not Available	947	Open in IMG/M
3300031819\|Ga0318568_10757991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	603	Open in IMG/M
3300031821\|Ga0318567_10758420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	550	Open in IMG/M
3300031833\|Ga0310917_10607502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	743	Open in IMG/M
3300031845\|Ga0318511_10598361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300031879\|Ga0306919_10018781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4130	Open in IMG/M
3300031879\|Ga0306919_10463672	Not Available	975	Open in IMG/M
3300031893\|Ga0318536_10526336	Not Available	593	Open in IMG/M
3300031896\|Ga0318551_10447169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	738	Open in IMG/M
3300031897\|Ga0318520_10186624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1218	Open in IMG/M
3300031910\|Ga0306923_10263182	All Organisms → cellular organisms → Bacteria	1973	Open in IMG/M
3300031910\|Ga0306923_10426819	Not Available	1506	Open in IMG/M
3300031910\|Ga0306923_12323322	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300031912\|Ga0306921_10993891	Not Available	947	Open in IMG/M
3300031912\|Ga0306921_11428609	Not Available	759	Open in IMG/M
3300031941\|Ga0310912_11455591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300031942\|Ga0310916_10921830	Not Available	732	Open in IMG/M
3300031942\|Ga0310916_11052491	Not Available	677	Open in IMG/M
3300031945\|Ga0310913_10258606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1224	Open in IMG/M
3300031946\|Ga0310910_11237208	Not Available	578	Open in IMG/M
3300031954\|Ga0306926_12496173	Not Available	567	Open in IMG/M
3300031954\|Ga0306926_12737815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	534	Open in IMG/M
3300031959\|Ga0318530_10279871	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031981\|Ga0318531_10197476	Not Available	906	Open in IMG/M
3300032001\|Ga0306922_11646016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300032001\|Ga0306922_12339386	Not Available	511	Open in IMG/M
3300032025\|Ga0318507_10231027	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300032041\|Ga0318549_10109182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1212	Open in IMG/M
3300032043\|Ga0318556_10136141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1262	Open in IMG/M
3300032044\|Ga0318558_10521901	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300032051\|Ga0318532_10010151	All Organisms → cellular organisms → Bacteria → Proteobacteria	2869	Open in IMG/M
3300032051\|Ga0318532_10099608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1024	Open in IMG/M
3300032052\|Ga0318506_10188595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909	Open in IMG/M
3300032055\|Ga0318575_10387661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300032055\|Ga0318575_10711085	Not Available	508	Open in IMG/M
3300032059\|Ga0318533_10024038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3884	Open in IMG/M
3300032063\|Ga0318504_10441786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300032066\|Ga0318514_10688038	Not Available	544	Open in IMG/M
3300032068\|Ga0318553_10528698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	618	Open in IMG/M
3300032076\|Ga0306924_10110352	All Organisms → cellular organisms → Bacteria	3119	Open in IMG/M
3300032076\|Ga0306924_11635786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300032076\|Ga0306924_12471495	Not Available	522	Open in IMG/M
3300032090\|Ga0318518_10594845	Not Available	565	Open in IMG/M
3300032091\|Ga0318577_10300091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	768	Open in IMG/M
3300032094\|Ga0318540_10071121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1598	Open in IMG/M
3300032261\|Ga0306920_101308250	Not Available	1043	Open in IMG/M
3300032515\|Ga0348332_11763283	All Organisms → cellular organisms → Bacteria	1813	Open in IMG/M
3300033289\|Ga0310914_10654071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	945	Open in IMG/M
3300033289\|Ga0310914_11246224	Not Available	646	Open in IMG/M
3300033290\|Ga0318519_10938781	Not Available	536	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.25%
Aquatic	Environmental → Aquatic	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.74%
Freshwater	Environmental → Aquatic → Freshwater	0.75%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.75%
Cave	Environmental → Terrestrial → Cave	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.98%
Loam	Environmental → Terrestrial → Soil → Loam	3.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.75%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	84.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.75%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	52.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.75%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.75%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_102248481	3300004633	Tropical Forest Soil	MSATPDSTLADSEQLIADLQRQLAECRAERDEALEYQTATSDVLNVISRSTAD
Ga0070714_1024330401	3300005435	Agricultural Soil	MSAIPDSTLRDSQQLIADLQRQLAECKAERDEALEYQTATSD
Ga0070707_1010068912	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSVTPDSTLADSEQLIANLHRQLAECRAERDEALQRETATTEV
Ga0070697_1018213471	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSATPDSTFTNSEHLIADLQRQLAECRAERDEAREYQTATSDVLNVISRSTADVQPVLD
Ga0070765_1000362661	3300006176	Soil	MSAIPDSTLADCEQLVADLQRQLAECRAERDEAREYQTATSDVLKVIS
Ga0126374_114897812	3300009792	Tropical Forest Soil	MSAIPDSTLADSQQLIADLQRQLAERTAERDEAPEYQTATALHTLPL
Ga0126373_118572321	3300010048	Tropical Forest Soil	MSAIPDSTLAGSEQLVADLQRQLAECRAERDEALEYQTAT
Ga0126370_112581062	3300010358	Tropical Forest Soil	MSVIADSTLADSEQLIADLQRQLAECRAERDEALEQQTATAF
Ga0126372_124481061	3300010360	Tropical Forest Soil	MSPTPDSTLVELVNLRRQLAERTAERDEALEYQSAISDVLKIIASSTSD
Ga0126378_111862782	3300010361	Tropical Forest Soil	MSATPDSTLADSDQFVADLQRQLAECRAERDEALQRETA
Ga0126381_1020361031	3300010376	Tropical Forest Soil	MSAIPDSTLAESQQLIADLQRQLAECRAERDKAIEYQTATSDVLN
Ga0126369_111456521	3300012971	Tropical Forest Soil	MSAIPDSTLAASEQLIADLQRQLIECRAERDEAREYQTATSDV
Ga0182036_106802011	3300016270	Soil	MSATRDSTLADSKQLIADLQRQLAECRVERDEALEYQTVTS
Ga0182036_117936122	3300016270	Soil	MSATPDSTLSDSGQLIADLQRQLAECRAERDEALQRETATAE
Ga0182041_106869752	3300016294	Soil	MNATPDSTLADCEQLIAVLQRQLAECRAERDEALEYQTATS
Ga0182041_110804542	3300016294	Soil	MSPIPDSTLADCEQLVADLQRQLAECRAERDEALEYQTA
Ga0182033_105130114	3300016319	Soil	MSAIPDSTLADCQQLVADLQRQLAECRAERDEALEYQT
Ga0182033_121138801	3300016319	Soil	MSAIPDSTLAASEQLIADLQRQLAECRAERDEALEYQTAT
Ga0182035_106799682	3300016341	Soil	MSAIPDSTLAASEQLIADLQRQLAECRAERDEALEYQTATSDVL
Ga0182035_112715562	3300016341	Soil	MSATRDSTLADSEQLIADPAQLITDLQRQLAERTAERDEALEYQTATADVLNV
Ga0182035_119127521	3300016341	Soil	MSAIPDSTLADSELLIADLQRQLAECRAERDEALQRETATAE
Ga0182032_100846884	3300016357	Soil	MSAIPDSTLADCKQLVADLQRQLAECRAERDEAIEYQ
Ga0182034_103976571	3300016371	Soil	MSATQGSTLADSEQLVAELQRQLAECKAERDEALEYQ
Ga0182034_109586252	3300016371	Soil	MNATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLNVIS
Ga0182034_117075982	3300016371	Soil	MSATPDSTLADCEQLVAHLRHQLAECRAGRDEALAREAALAEVL
Ga0182037_100581204	3300016404	Soil	MSAIPDSTFADSEQLIADLQRQLAEALAQQTATAEVLRVI
Ga0182037_105256071	3300016404	Soil	MSPIPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATS
Ga0182037_111101141	3300016404	Soil	MSAIPDSTFAESEQLIAELQRQLAERTAERDEALEYQTATSE
Ga0182037_120817122	3300016404	Soil	MSTTPDSTLANPELLIADLQRQLAQCRAERDEALEQQ
Ga0182037_121642171	3300016404	Soil	MSAIPDSTLADSERLIADLQRQLAECRAERDEALQRETA
Ga0182039_118814862	3300016422	Soil	MNATPDSTLADSQQLIADLQRQLAERTAERDEAIEYQTATSDVLQVISRS
Ga0182038_107055591	3300016445	Soil	MSANPDSTLADCEQLVADLQRQLAECRAERDEALEYQ
Ga0182038_109301851	3300016445	Soil	MSAIPDSTLADCQQLLADLQRQLAECRAERDKALEYQGATSDVLNVISRSTADVQPVL
Ga0187816_104841911	3300017995	Freshwater Sediment	MSATPDSTLADCQQLVADLQRQLAECRAEQDEAIEYQTATSDV
Ga0210401_106230743	3300020583	Soil	MSAMPDSTLATSERLIADLQRQLAECRAERDEALQRETATAE
Ga0210406_107653371	3300021168	Soil	MRTTPTSTLADSEQLIADLQRQLAECRAERDEALEYQTATSDVL
Ga0187846_101305581	3300021476	Biofilm	MSATPDSTLADCQKLVADLQRQLAECRAERDEAREYQTA
Ga0210402_110560052	3300021478	Soil	MSATPDSTFADSEQLVADLHRQLAECRAERDEALEQQAATAEVLQV
Ga0126371_101608482	3300021560	Tropical Forest Soil	MSATPDSTLANPEQLVADLQRQLAERDAALAEALEQQT
Ga0126371_104318911	3300021560	Tropical Forest Soil	MSATRDSTLADSEQLVADLRRQLAERTGERDEARKYQTATSD
Ga0126371_105438223	3300021560	Tropical Forest Soil	MSATPDSTFADSEQLIADLQRQLAECRTERDEALQRETAT
Ga0126371_113662191	3300021560	Tropical Forest Soil	MPDSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLDVIARSTGDV
Ga0126371_116407542	3300021560	Tropical Forest Soil	MSATPNSTLADCEQLVADLQRQLAECRAERDAGLA
Ga0126371_133373441	3300021560	Tropical Forest Soil	MSVRSESTLADCQQLVADLQRQLAECRAQRDECKAERDEALRQQTATAEVLQ
Ga0318516_101456932	3300031543	Soil	MSATPASSLTDSEQLIADLQRQLAKCRAERDEALEYQTATSDVLKV
Ga0318534_104160632	3300031544	Soil	MNPTPDSTLADSEQLIADLRRQLAERTTERDEALEYQTAISDVLNVIS
Ga0318534_104841161	3300031544	Soil	MNATPDSTLADSAQLVADLQRQLAECRAERDEAIEYQTATSD
Ga0318541_101610001	3300031545	Soil	MNATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLN
Ga0318541_105500171	3300031545	Soil	MSAIPDSTLADCQQLVADLQRQLAECRAERDEALEYQTATSD
Ga0318541_108196771	3300031545	Soil	MSATPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATS
Ga0318528_104530751	3300031561	Soil	MSATRESTLADSEQLVADLQRQLAECKAERDEAIEYQTATSFSHPPPR
Ga0318573_107512371	3300031564	Soil	MNATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLRV
Ga0318515_103813761	3300031572	Soil	MSPIPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATSDVLNVISRST
Ga0310915_111110642	3300031573	Soil	MNATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLNVI
Ga0310915_112210821	3300031573	Soil	MNATPDSTLADSQQLIADLQRQLAERTAERDEAIEYQTATSDVLQV
Ga0310915_112874931	3300031573	Soil	MSATRESTLADSEQLIADLQRQLAECRAERDEALEYQTATSFSHPP
Ga0318542_100530451	3300031668	Soil	MSATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLN
Ga0318561_102036581	3300031679	Soil	MSAMPDSMSTDPKDRLIADLQRQLAECRAERDEALEQQTATTEVLQVINS
Ga0318561_108130151	3300031679	Soil	MSANPDSTLADCEQLVADLQRQLAECRAERDEALEY
Ga0318560_101985412	3300031682	Soil	MSAIPDSTLAASEQLIADLQRQLAECRAERDEALEYQTATSDVLN
Ga0307474_113143312	3300031718	Hardwood Forest Soil	MSATPASTLTDSEQLIADLQRQLAECRAERDESREYQTATSEVLNVISRSTSDV
Ga0306917_104067662	3300031719	Soil	MSAMPEGTLAGSERLIADLQRQLDEALQRETANAEVLQVINSSPG
Ga0306917_109852882	3300031719	Soil	MSATPASTLTDSEQLIADLQRQLAECRAGRDEALEYQTATSDVLKVIS
Ga0306917_110672792	3300031719	Soil	MSATPDSTLADSEQLIADLQRQLAECRAQRDEALQRETAAAEILQ
Ga0318493_104143741	3300031723	Soil	MSANPDSTLADCEQLVADLQRQLAECRAERDEALEYQAATSDV
Ga0318501_104161011	3300031736	Soil	MNATPDSTLANSEQLVADLQRQLAECRAERDEALEYQ
Ga0318501_104527791	3300031736	Soil	MSAIPDSTLADSELLIADLQRQLAECRAERDAALQRETATAE
Ga0306918_100407681	3300031744	Soil	MNTTPDSTLADCEQLIADLQRQLAEYRAERDEAREYQTATS
Ga0306918_111828053	3300031744	Soil	MNATHNSTLADCQQLVADLQRQLAECAAERDEALEYQTATSDVLSVI
Ga0318494_106429732	3300031751	Soil	MNPTPDSTLADSEQLIADLRRQLAERTTERDEALEYQTAISDVLNVISRS
Ga0318494_107347961	3300031751	Soil	MNATPDSILSDSPQLIADLQRQLAQCRAERDEAREYQTATSDVLNVISRSTGDVQPVLD
Ga0318509_108374752	3300031768	Soil	MSANPDSTLADCEQLVADLQRQLAECRAERDEALEYQTA
Ga0318546_104163911	3300031771	Soil	MSPTPNSSLAYSEQFVADLQRQLAECRAERDEALQRETATTEV
Ga0318498_104240051	3300031778	Soil	MSATQGSTLADSEQLVADLQRQLAECKAERDEALEYQTATSDVLNVISRSTSDVQPV
Ga0318566_105325942	3300031779	Soil	MSAIPDSTLADSEQLIADLQRQLAECRAERDEALEYQT
Ga0318547_110891552	3300031781	Soil	MSAIPDSTLADCQQLVADLQRQLTECRAERDKALEYQTATSDVLNVISRSTF
Ga0318552_103635472	3300031782	Soil	MSAIPDSTLAASEQLIADLQRQLAECRAERDEALEYQTATSDVLNVISRSSSDAQPV
Ga0318552_106818331	3300031782	Soil	MSAMPEGTLAGSERLIADLQRQLDEALQRETANAE
Ga0318529_106020831	3300031792	Soil	MSAMPEGTLAGSERLIADLQRQLDEALQRETANAEVLQVIN
Ga0318548_100114434	3300031793	Soil	MSATRDSTLADSQQLIADLQRQLAECRAERDEALEYQTATSDV
Ga0318576_101875153	3300031796	Soil	MSAPPDSTLADSKQLVADLQRQLAECRAERDAGLARE
Ga0318550_103042741	3300031797	Soil	MSAIPDSTLADCKQLVADLQRQLAECRAERDEAIEYQSAT
Ga0318550_106473951	3300031797	Soil	MSATRDSTLADSEQLIADLQRQLAEYRAERDEAIEYQTATSDVLN
Ga0318523_102206712	3300031798	Soil	MNPTPDSTLADSEQLIADLRRQLAERTTERDEALEYQTAISDVLNVISR
Ga0318568_107579911	3300031819	Soil	MNATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLNVISRSTSDV
Ga0318567_107584202	3300031821	Soil	MSANPDSTLADCEQLVADLQRQLAECRAERDEAFEYQA
Ga0310917_106075022	3300031833	Soil	MSAPPDSTLADSKQLVADLQRQLAECRAERDEALQRETATAEVLRV
Ga0318511_105983612	3300031845	Soil	MSAIPDSTLADAEQIIADLRRQLAECRAERDEALQRETATAEI
Ga0306919_100187811	3300031879	Soil	MSANPDSTLADCEQLVADLQRQLAECRAERDEAFEYQAATSEVLNV
Ga0306919_104636723	3300031879	Soil	MSAIPDSTLADSERLIADLQRQLAECRAERDEALQRETATAEIL
Ga0318536_105263361	3300031893	Soil	MSATPASSLTDSEQLIADLQRQLAKCRAERDEALE
Ga0318551_104471691	3300031896	Soil	MSAIPDSTLADSEQLIADLQRQLAECRAERDEALEYQTATSDVLK
Ga0318520_101866242	3300031897	Soil	MSAIPDSTLADSEQLIADLQRQLAECRAERDEALEYQ
Ga0306923_102631821	3300031910	Soil	MSAIPSTLADSEQLIADLQRQLAERTAERDEAREYQTATSEVLNVISRSTA
Ga0306923_104268191	3300031910	Soil	MSATPDSTLAASEQLIADLQRQLAECRAERDEAIDYQTATSDVLNIISRSTADVQ
Ga0306923_123233222	3300031910	Soil	MSATPDSTLADCEQLVADLQRQLAECRAERDEALEYQTAT
Ga0306921_109938911	3300031912	Soil	MSATQGSTLADSEQLVADLQRQLAECKAERDEALEYQ
Ga0306921_114286091	3300031912	Soil	MSATPASTLADCEQLVADLQRQLAECRTERDEALEYQ
Ga0310912_114555912	3300031941	Soil	MSAIPDSKLADSEQLIADLQRQLAECRAERAEALEYQTATSDVLNVISRSTA
Ga0310916_109218301	3300031942	Soil	MSAIPDSTLADCEQRVADLQRQLAECRAERDESLEYQTATSDVLNVISRSTSDV
Ga0310916_110524911	3300031942	Soil	MSATPDSTLADSEQLIADLQRQLAECRAQRDEALQRETAA
Ga0310913_102586064	3300031945	Soil	MSAIPDSTLADCQQLVADLQRQLTECRAERDKALE
Ga0310910_112372081	3300031946	Soil	MNATPDSTLADSQQLIADLQRQLAERTAERDEAIEYQTATSD
Ga0306926_124961731	3300031954	Soil	MSAIPDSTLADCQQLTTDLQRQLAECRAERDAARTFPPP
Ga0306926_127378151	3300031954	Soil	MSPIPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATSDVLQV
Ga0318530_102798711	3300031959	Soil	MSAIPDSTLADAEQIIADLRRQLAECRAERDEALQRETA
Ga0318531_101974762	3300031981	Soil	MSATPDSTLAYSEQFVADLQRQLAECRAECDEALQRETATA
Ga0306922_116460162	3300032001	Soil	MSAPPDSTLADSKQLVADLQRQLAECRAERDEARQHQ
Ga0306922_123393861	3300032001	Soil	MSANPDSTLADCEQLVADLQRQLAECRAERDEAFEYQ
Ga0318507_102310272	3300032025	Soil	MSATPDSTLSDSGQLIADLQRQLAECRAERDEALQRETATAEI
Ga0318549_101091824	3300032041	Soil	MSAIPDSTLADCQQLVADLQRQLAECRAERDEALEYQ
Ga0318556_101361411	3300032043	Soil	MSAIPDSTLADCQQLVADLQRQLTECRAERDKALEYQTATSDV
Ga0318558_105219011	3300032044	Soil	MSAIPDSTLADCQQLLADLQRQLAECRAERDEALEYQ
Ga0318532_100101511	3300032051	Soil	MSATRDSTLADSQQLIADLQRQLAECRAERDEALEYQTATSDVLNV
Ga0318532_100996081	3300032051	Soil	MSAIPDSTLADCQQVVADLQRQLTECRAERDEALEYQTATSDVLNVISRSTADVQP
Ga0318506_101885951	3300032052	Soil	MSANPDSTLADCEQLVADLQRQLAECRAERDEALQYQTAT
Ga0318575_103876612	3300032055	Soil	MSPIPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATSDVL
Ga0318575_107110851	3300032055	Soil	MSAMPEGTLAGSERLIADLQRQLDEALQRETANAEV
Ga0318533_100240389	3300032059	Soil	MSATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLKV
Ga0318504_104417862	3300032063	Soil	MSATPDSTLADSTLADCQKLVADLQRQLAECRAER
Ga0318514_106880382	3300032066	Soil	MSAPPDSTLADSKQLVADLQRQLAECRAERDEALQRETATAEVLRVINS
Ga0318553_105286982	3300032068	Soil	MNPTPDSTLADSEQLIADLRRQLAERTTERDEALEYQTAISDV
Ga0306924_101103521	3300032076	Soil	MNTTPDSTLADCEQLIADLQRQLAEYRAERDEAREYQTATSDVLNVISRS
Ga0306924_116357861	3300032076	Soil	MNATPDSTLADPAQLVADLQRQLAECRAERDEALEYQTATSDVLNVISRSTADV
Ga0306924_124714952	3300032076	Soil	MSAIPDSTLADWQQLVADLQRQLAECRAERDEALEYQTATSDVLK
Ga0318518_105948451	3300032090	Soil	MSAIPDSTLADCQQLVADLQRQLAECRVERDESLEYQTATSEVLNVISRSTADV
Ga0318577_103000911	3300032091	Soil	MSAIPDSTLADSEQLIADLQRQLAECRAERDEALEY
Ga0318540_100711211	3300032094	Soil	MSATPDSALTNPEQLVADLQRQLGECKAERDEALEQQTATAEVLQVI
Ga0306920_1013082503	3300032261	Soil	MSAIPDSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLN
Ga0348332_117632831	3300032515	Plant Litter	MSATPDSTLADCEQLVADLRHQLAGCRAERDEALEYQTATS
Ga0310914_106540711	3300033289	Soil	MSPIPNSTLADSQQLIADLQRQLAECRAERDEALQRETATAEVL
Ga0310914_112462241	3300033289	Soil	MSATRDSTLADSEQLIADLQCQLAECRAERDEALEYQTATSDVLNVISRSTADVQPV
Ga0318519_109387811	3300033290	Soil	MRTMPASTLADSEQFIADLQRQLAECRAERDEAREYQTAT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F060179

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences