NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F059282

Metagenome / Metatranscriptome Family F059282

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F059282
Family Type Metagenome / Metatranscriptome
Number of Sequences 134
Average Sequence Length 52 residues
Representative Sequence MLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWVAAARAA
Number of Associated Samples 114
Number of Associated Scaffolds 134

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 109
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(44.776 % of family members)
Environment Ontology (ENVO) Unclassified
(52.985 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(43.284 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.41%    β-sheet: 19.61%    Coil/Unstructured: 50.98%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 134 Family Scaffolds
PF01769MgtE 67.91
PF03448MgtE_N 20.90
PF13673Acetyltransf_10 2.24
PF01522Polysacc_deac_1 1.49
PF13515FUSC_2 1.49
PF00563EAL 1.49
PF02771Acyl-CoA_dh_N 0.75
PF04632FUSC 0.75
PF13365Trypsin_2 0.75

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 134 Family Scaffolds
COG2239Mg/Co/Ni transporter MgtE (contains CBS domain)Inorganic ion transport and metabolism [P] 88.81
COG1824Permease, similar to cation transportersInorganic ion transport and metabolism [P] 67.91
COG0726Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 familyCell wall/membrane/envelope biogenesis [M] 1.49
COG2200EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)Signal transduction mechanisms [T] 1.49
COG3434c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domainsSignal transduction mechanisms [T] 1.49
COG4943Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domainsSignal transduction mechanisms [T] 1.49
COG5001Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domainSignal transduction mechanisms [T] 1.49
COG1289Uncharacterized membrane protein YccCFunction unknown [S] 0.75
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.75


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil44.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.45%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.70%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil6.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.22%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil5.22%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.48%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.24%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.24%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil1.49%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.75%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.75%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.75%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.75%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.75%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664022Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000793Forest soil microbial communities from Amazon forest - 2010 replicate II A001EnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006579Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026498Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-AEnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300027654Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028824Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032025Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032064Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033475Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YCEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPgaii200_096919622228664022SoilMMRLRLKADGRIVEILPDGSEGALPSPLAEIAQQMRYGRPXGGWVAAVRAARGT
AF_2010_repII_A001DRAFT_1001421033300000793Forest SoilMMRVRLKADGRIVEILPDGSEQALPSPLREIAEQMRYGRPAGGWLAAARAVRGPAADAAYARG
JGI10216J12902_11612998413300000956SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMREGRPAGGWVAAARAARGAT
JGI25614J43888_1016015613300002906Grasslands SoilMMRLRLKADGRIVEILPDGSEGALPSPLAEIAQQMRYGRPPGGWVAAARAARGARADATY
Ga0066398_1000317113300004268Tropical Forest SoilMMRLRLKADGRIVEILPDGREGALPSPLAEIAQQMRYGRPPG
Ga0066680_1053069023300005174SoilMMRLRLKADGRIVEILPDGSEGALPSPLAEIAQQMRYGRPPGGWVAAARAARGARADATYAR
Ga0066388_10309066023300005332Tropical Forest SoilMLRVRLKADGRIVEILADGSERALPSPLAEIAEQMRYGRPAGGWVA
Ga0066388_10820069513300005332Tropical Forest SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWV
Ga0066388_10858187713300005332Tropical Forest SoilMMRVRLKADGRIVEILPDGSEAALPSPLAEIAQHMRHGRP
Ga0008090_1015996513300005363Tropical Rainforest SoilMLRVRLKADGRIVEVLPDGSEAALPSPLAEIAQQMRQERPAGGWVAASRAAR
Ga0008090_1573215913300005363Tropical Rainforest SoilMMRVRLKADGRIVEILPDGSEAALPSPLAEIAQHMRYGQAAGGWVAAARAARG
Ga0066903_10464487523300005764Tropical Forest SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAAR
Ga0066903_10820533013300005764Tropical Forest SoilLADHRESHRPVAAMMRVRLKADGRIVEILPDGSEAALPSPLAEIAQHMRHGQAAGGWVAAARAA
Ga0066652_10034917813300006046SoilMMRLRLKADGRIVQILPDGREGTLPSPLAEIAQQMRYGRPLG
Ga0070716_10029723613300006173Corn, Switchgrass And Miscanthus RhizosphereMMRLRLKADGRIVEILPDGSEQALPSPLAEIAQQMRYGRPAGGW
Ga0074054_1199323023300006579SoilMMRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWVAAARAA
Ga0075430_10130994213300006846Populus RhizosphereLVSQRESHRPMAAMMRVRLKADGRIVEILPDGSERALPSPLAEIAQQMRYGHSAGGFLAASRAAR
Ga0075425_10292733913300006854Populus RhizosphereMMRLRLKADGRIVEILPDGSEGALPSPLAEIAQQMRYGRPPGGWVAAARAARGTGADAAYARGVRA
Ga0066710_10232685713300009012Grasslands SoilMMRVRLKADGRIVEILADGSEQALPSPLAEIAQQMRYGRPASSWVVAAMVARGGVAGG
Ga0099828_1060269613300009089Vadose Zone SoilMMRVRLKADGRIVEILPDGSERALPSPLGEIAQQMRYGWPAGGWVAAARAARGAAADAVYAR
Ga0099827_1094120313300009090Vadose Zone SoilMMRLRLKADGRIVEILPDGSEGALPSPLAEIAQQMRYGRPPGGWVAAARAARGARADATYARGV
Ga0111539_1095711913300009094Populus RhizosphereMTTMMRVRLKADGRIVEILPDGSERALPRQLDNVGEQATAA
Ga0075418_1287430123300009100Populus RhizosphereMMRLRLKADGRIVEILPDGSEQALPSPLAEIAQQMRYGRPAGGWVAAARAARGTAADA
Ga0114129_1078672313300009147Populus RhizosphereMLRVRLKADGRIVEILPDGSERPMPPAFAESYSSHN
Ga0075423_1198806523300009162Populus RhizosphereMMRLRLKADGRIVEILPDGSEGALPSPLAEIAQQMRYGRPPGGWVAAARAARGTGAD
Ga0126374_1068923623300009792Tropical Forest SoilMLRVRLKADGRIVEVLPDGSEAALPSPLAEIAQQMRQERPAGGWVAASRSARASTADAAYARG
Ga0126374_1142713313300009792Tropical Forest SoilMLRVRLKADGRIVEILPDGSEQPLPRRLAAIAEEMRRGGSR
Ga0126380_1161302123300010043Tropical Forest SoilMMRVRLKADGRIVEILPDGSEAALPSPLAEIAQHIRHGRPAGGWVAAARAARGASADAAYARGVR
Ga0126380_1210304013300010043Tropical Forest SoilMMRLRLKADGRIVEILPDGSEQALPSPLAEIAQQMRYGR
Ga0126382_1196894013300010047Tropical Forest SoilMMRLRLKADGRIVEILPDGSEGALPSPLAELAQQMRYGRPAGGWVAAARAA
Ga0126373_1248491523300010048Tropical Forest SoilMLRVSLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAG
Ga0134086_1035827213300010323Grasslands SoilMMRLRLKADGRIVQILPDGREGTLPSPLAEIAQQMRYGR
Ga0126370_1113287313300010358Tropical Forest SoilMLRVRLKADGRIVEVLPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARASTADAVYAR
Ga0126379_1322210523300010366Tropical Forest SoilMLRVRLKADGRIVEVLPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAA
Ga0126383_1302621613300010398Tropical Forest SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQ
Ga0134123_1117209313300010403Terrestrial SoilMMRLRLKADGRIVEILPDGSEQALPSPLAEIAQQMRYGRPASSWVVAARAARGAAADAAYAR
Ga0137383_1129930623300012199Vadose Zone SoilMMRLRVKADGRIVQILPDGREGTLPSPLAEIAQQMRYGRPLGGWIAAARAARGAGPDAAYARGVRART
Ga0137382_1014392613300012200Vadose Zone SoilMLRVRLKADGRIVEILPDGSERALPSPLAEIAQQMRYGRPAGGFLAASRAARAGAAD
Ga0137363_1077710313300012202Vadose Zone SoilMMRVRLKADGRIGEILPDGSEAALPSPLAEIAQHMRHGRP
Ga0137362_1052189213300012205Vadose Zone SoilMMRVRLKADGRIVEILPDGSEAALPSPLAEIAQHMRHGRPAGG
Ga0137381_1073126123300012207Vadose Zone SoilMATMMRVRLKADGRIVEILPDGSEAALPSPLAEIAQHMRHGRPAGGWVAAARAARGAMATSE
Ga0137379_1032896413300012209Vadose Zone SoilMMRLRLKADGRIVQILPDGREGTLPSPLAEIAQQMRYGRPLGGWIAAARAARGAGPDAACAR
Ga0137378_1014227713300012210Vadose Zone SoilMATMMRVRLKADGRIVEILPDGSEAALPSPLAEIAQHM
Ga0137377_1150595713300012211Vadose Zone SoilMMRLRLKADGRIVQILPDGSEGTLPSPLAEIAQQMRYGRPPGGWIAAAR
Ga0137366_1038373813300012354Vadose Zone SoilMATMMRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRHGRPAGGWVAA
Ga0164301_1053288623300012960SoilMMRLRLKADGRIVEILPDGSEQALPSPLAEIAQQMRYGRPAGGWVAAARAARGTAADAVYARGV
Ga0132255_10130859113300015374Arabidopsis RhizosphereMLRVRLKADGRIVEILADGSERALPSPLAEIAEQMRYGRPGGGWVAAARAARGGA
Ga0182036_1022419413300016270SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWVA
Ga0182036_1087157023300016270SoilMLRVRLKADGRIVAILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARGAT
Ga0182041_1027621313300016294SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAAR
Ga0182032_1104117913300016357SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARA
Ga0182034_1035221213300016371SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARGA
Ga0182034_1191632123300016371SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARASTADAAY
Ga0066655_1092774923300018431Grasslands SoilMMRLRLKADGRIVQILPDGREGTLPSPLAEIAQQMRYGRPLGGWIAA
Ga0066667_1210564813300018433Grasslands SoilMMRLRLKADGRIVQILPDGSEGTLPSPLAEIAQQMRYGRPLGGWIAAARAARGA
Ga0210406_1012680513300021168SoilMMRLRLKADGRIVEILPDGSEQALPSPLAEIAQQMRYGRPAGGWVAAARA
Ga0210392_1010436113300021475SoilMMRLRLKADGRIVEILPDGSEQALPSPLAEIAQQMRYGRPAGGWVAAARAARGTAADAVYARGVR
Ga0179589_1018155713300024288Vadose Zone SoilMMRLRLKADGRIVEILPDGSEGALPSPLAEIAQQMRYGRPPG
Ga0207684_1033297123300025910Corn, Switchgrass And Miscanthus RhizosphereMRLRLKADGRIVEILPDGSEGALPSPLAEIAQQMRYGRPPGGWVAAARAARGTGADAVYARGVRAHTK
Ga0207700_1000081013300025928Corn, Switchgrass And Miscanthus RhizosphereMMRLRLKADGRIVEILPDGSEQALPSPLAEIAQQMRYGRPA
Ga0209239_129282423300026310Grasslands SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMREGRPAGGWVAAARAARGV
Ga0209803_112771023300026332SoilMMRLRLKADGRIVQILPDGSEGTLPSPLAEIAQQMRYGRPPGGWVA
Ga0257156_110712513300026498SoilMMRLRLKADGRIVEILPDGSEGTLPSPLAEIAQQMR
Ga0209058_102674613300026536SoilMMRLRLKADGRIVEILPDGREGSLPSPLAEIAQQMR
Ga0209474_1066892213300026550SoilMLRVRLKADGRIVEILADGSERALPSPLAEIAEQMRYGRPAGGWVAAARAARGAAA
Ga0209799_100705533300027654Tropical Forest SoilMMRLRLKADGRIVEILPDGREGALPSPLAEIAQQMRYGRPPGARRT
Ga0209590_1057239813300027882Vadose Zone SoilMMRLRLKADGRIVEILPDGSEGALPSPLAEIAQQMRYGRPPGGWVAAAR
Ga0307310_1042039523300028824SoilMMRLRLKADGRIVEILPDGSEQALPSPLAEIAQQMRYGRSAGGWVAAARAARGTAADAAYARG
Ga0318516_1052078413300031543SoilMLRVRLKADGRIVAILPDGSEAALPSPLAEIAQQMRQER
Ga0318534_1006541133300031544SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARASTADAAYAR
Ga0318541_1001907213300031545SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGG
Ga0318541_1006956523300031545SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARAS
Ga0318528_1044287713300031561SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAA
Ga0318573_1024909713300031564SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQE
Ga0310915_1010408713300031573SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARGATADAAY
Ga0310915_1033919523300031573SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARSARASTADAAYARG
Ga0318555_1006734213300031640SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARASTADAAYARGV
Ga0318542_1004024313300031668SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARAST
Ga0318561_1034402813300031679SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWV
Ga0318574_1001285053300031680SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQG
Ga0318574_1086186723300031680SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWVAAARAA
Ga0318560_1041521413300031682SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARSARASTADAAYARGV
Ga0318496_1039387813300031713SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARGATAD
Ga0306917_1013070233300031719SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARASPADAAY
Ga0318493_1038532413300031723SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARGAT
Ga0318501_1003296513300031736SoilMMRVRLKADGRIVEILPDGSEAALPSPLAEIAQHMRHGRPAGGWVAAARAARGASADAAY
Ga0318501_1059560713300031736SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVA
Ga0318502_1098787113300031747SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPA
Ga0318494_1013229713300031751SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPPP
Ga0318537_1006147023300031763SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMREGRPAGG
Ga0318537_1040150723300031763SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARASTADAAYARG
Ga0318509_1006959823300031768SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWVAA
Ga0318543_1036415613300031777SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGG
Ga0318498_1005947523300031778SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARGATADAAN
Ga0318566_1001058513300031779SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWVAAARAARGATADAAYARG
Ga0318552_1000484813300031782SoilMMRVRLKADGRIVEILPDGSEAALPSPLAEIAQHMRHGQPAGGWVAAARA
Ga0318529_1057595123300031792SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARSARASTADAAYARGVR
Ga0318576_1001409243300031796SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARA
Ga0318523_1017844823300031798SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARASTADAAYARGVR
Ga0318568_1042652623300031819SoilMLRVRLKADGRIVAILPDGSEAALPSPLAEIAQQMR
Ga0318567_1046749913300031821SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMREGRPAGGWVAAARAARGATADAAYARG
Ga0318567_1060854323300031821SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAA
Ga0310917_1007290513300031833SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWVAAARAARGATADAAYARGV
Ga0306919_1139447523300031879SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWVAAARAARGATADA
Ga0318544_1008230023300031880SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAAR
Ga0306925_1010358243300031890SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMREGRPAGGWVAAARAARGATAD
Ga0306925_1023784913300031890SoilMLRVRLKADGRIVAILPDGSEAALPSPLAEIAQQMRQERPAGGWVA
Ga0318536_1006851213300031893SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGW
Ga0318536_1013781813300031893SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGG
Ga0318520_1078742213300031897SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMREGRPAGGWV
Ga0306923_1030670713300031910SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWVAAARAARGATADAAY
Ga0306923_1212649513300031910SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQM
Ga0310916_1026092823300031942SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARGATA
Ga0310913_1022690113300031945SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGR
Ga0310910_1002168513300031946SoilMLRVRLKADGRIVAILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARGATA
Ga0306926_1007744453300031954SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARTARGATAD
Ga0318531_1002907433300031981SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARGATADAAYARGV
Ga0318507_1007361523300032025SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARASTA
Ga0310911_1019574913300032035SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARGATADAAYARGVR
Ga0310911_1091256413300032035SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARAS
Ga0318559_1027058523300032039SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGPG
Ga0318558_1023717913300032044SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQM
Ga0318504_1004402323300032063SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARASTADAAYARG
Ga0318504_1047167113300032063SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARSARASTA
Ga0318510_1049549613300032064SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWVAAARA
Ga0318514_1029842923300032066SoilMLRVRLKADGHIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARVGGVRA
Ga0318553_1055890523300032068SoilMLRVRLKADGRIVAILPDGSEAALPSPLAEIAQQMRQERPAGG
Ga0318518_1013977523300032090SoilMLRVRLKADGRIVAILPDGSEAALPSPLAEIAQQMRQERPAGGW
Ga0318577_1019150613300032091SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARGATADAT
Ga0318540_1034394023300032094SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAA
Ga0318540_1042194413300032094SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQGRPAGGWVAAARAARGATAD
Ga0306920_10403256023300032261SoilMLRVRLKADGQIVEILPDGSEAALPSPLAEIAQQMRQERPAGGWVAAARAARASTADAAYARG
Ga0310914_1033814013300033289SoilMLRVRLKADGRIVEILPDGSEAALPSPLAEIAQQMRQERP
Ga0310811_1129393223300033475SoilMLRVRLKADGRIVEILADGSERALPSPLAEIAEQMR


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.