NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F059053

Metagenome Family F059053

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F059053
Family Type Metagenome
Number of Sequences 134
Average Sequence Length 48 residues
Representative Sequence MPAPTVAPDDDERVPIFGTWPRIYAAVILCELAVMALIALFSSWKY
Number of Associated Samples 113
Number of Associated Scaffolds 134

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 65.41 %
% of genes near scaffold ends (potentially truncated) 30.60 %
% of genes from short scaffolds (< 2000 bps) 86.57 %
Associated GOLD sequencing projects 102
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (99.254 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(16.418 % of family members)
Environment Ontology (ENVO) Unclassified
(31.343 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(57.463 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 32.43%    β-sheet: 0.00%    Coil/Unstructured: 67.57%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 134 Family Scaffolds
PF00474SSF 56.72
PF07690MFS_1 18.66
PF00083Sugar_tr 11.94
PF06808DctM 1.49
PF00664ABC_membrane 0.75
PF13505OMP_b-brl 0.75
PF00206Lyase_1 0.75
PF00472RF-1 0.75
PF05690ThiG 0.75
PF01564Spermine_synth 0.75
PF02887PK_C 0.75
PF13462Thioredoxin_4 0.75
PF03109ABC1 0.75
PF02597ThiS 0.75

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 134 Family Scaffolds
COG0214Pyridoxal 5'-phosphate synthase subunit PdxSCoenzyme transport and metabolism [H] 0.75
COG0216Protein chain release factor RF1Translation, ribosomal structure and biogenesis [J] 0.75
COG0469Pyruvate kinaseCarbohydrate transport and metabolism [G] 0.75
COG0661Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB familySignal transduction mechanisms [T] 0.75
COG1186Protein chain release factor PrfBTranslation, ribosomal structure and biogenesis [J] 0.75
COG1977Molybdopterin synthase sulfur carrier subunit MoaDCoenzyme transport and metabolism [H] 0.75
COG2022Thiazole synthase ThiGH, ThiG subunit (thiamin biosynthesis)Coenzyme transport and metabolism [H] 0.75
COG2070NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase familyGeneral function prediction only [R] 0.75
COG2104Sulfur carrier protein ThiS (thiamine biosynthesis)Coenzyme transport and metabolism [H] 0.75

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms99.25 %
UnclassifiedrootN/A0.75 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000891|JGI10214J12806_11726805All Organisms → cellular organisms → Bacteria804Open in IMG/M
3300000955|JGI1027J12803_100082145All Organisms → cellular organisms → Bacteria1083Open in IMG/M
3300002906|JGI25614J43888_10213279All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300003324|soilH2_10279465All Organisms → cellular organisms → Bacteria1370Open in IMG/M
3300004114|Ga0062593_101798562All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300004156|Ga0062589_101958324All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300004156|Ga0062589_102297664All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium554Open in IMG/M
3300004463|Ga0063356_102488864All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300004480|Ga0062592_100904053All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium796Open in IMG/M
3300005093|Ga0062594_100124058All Organisms → cellular organisms → Bacteria1617Open in IMG/M
3300005172|Ga0066683_10635749All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300005293|Ga0065715_11028006All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300005330|Ga0070690_100156174All Organisms → cellular organisms → Bacteria1560Open in IMG/M
3300005330|Ga0070690_101458352All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium552Open in IMG/M
3300005347|Ga0070668_100231841All Organisms → cellular organisms → Bacteria1527Open in IMG/M
3300005355|Ga0070671_101884735All Organisms → cellular organisms → Bacteria532Open in IMG/M
3300005356|Ga0070674_100662945All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300005366|Ga0070659_100970728All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300005406|Ga0070703_10478241All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300005468|Ga0070707_102116320All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300005471|Ga0070698_100625352All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300005471|Ga0070698_101923984All Organisms → cellular organisms → Bacteria → Acidobacteria544Open in IMG/M
3300005518|Ga0070699_101792905All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300005536|Ga0070697_100782991All Organisms → cellular organisms → Bacteria844Open in IMG/M
3300005536|Ga0070697_102045982All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300005545|Ga0070695_100516537All Organisms → cellular organisms → Bacteria926Open in IMG/M
3300005547|Ga0070693_101013012All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300005553|Ga0066695_10592252All Organisms → cellular organisms → Bacteria667Open in IMG/M
3300005553|Ga0066695_10786594All Organisms → cellular organisms → Bacteria → Acidobacteria550Open in IMG/M
3300005569|Ga0066705_10037252All Organisms → cellular organisms → Bacteria2662Open in IMG/M
3300005718|Ga0068866_10747104All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300006049|Ga0075417_10613545All Organisms → cellular organisms → Bacteria → Acidobacteria554Open in IMG/M
3300006058|Ga0075432_10525118All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia531Open in IMG/M
3300006353|Ga0075370_10382849All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium843Open in IMG/M
3300006353|Ga0075370_10850834All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300006755|Ga0079222_11849261All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia586Open in IMG/M
3300006844|Ga0075428_100564475All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1216Open in IMG/M
3300006845|Ga0075421_100003047All Organisms → cellular organisms → Bacteria20036Open in IMG/M
3300006845|Ga0075421_100168258All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2733Open in IMG/M
3300006845|Ga0075421_101521810All Organisms → cellular organisms → Bacteria731Open in IMG/M
3300006847|Ga0075431_101318701All Organisms → cellular organisms → Bacteria682Open in IMG/M
3300006852|Ga0075433_10222369All Organisms → cellular organisms → Bacteria1677Open in IMG/M
3300006852|Ga0075433_10937548All Organisms → cellular organisms → Bacteria755Open in IMG/M
3300006854|Ga0075425_103077418All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300006871|Ga0075434_101253922All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300006894|Ga0079215_10569968All Organisms → cellular organisms → Bacteria728Open in IMG/M
3300006904|Ga0075424_100578986All Organisms → cellular organisms → Bacteria1199Open in IMG/M
3300006954|Ga0079219_11655871All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300006969|Ga0075419_11358337All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300007004|Ga0079218_12080935All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300007265|Ga0099794_10277802All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium866Open in IMG/M
3300009089|Ga0099828_10623821All Organisms → cellular organisms → Bacteria970Open in IMG/M
3300009090|Ga0099827_10496997All Organisms → cellular organisms → Bacteria1048Open in IMG/M
3300009094|Ga0111539_10000712All Organisms → cellular organisms → Bacteria43173Open in IMG/M
3300009100|Ga0075418_10170253All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2319Open in IMG/M
3300009100|Ga0075418_11593667All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300009147|Ga0114129_10312266All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2092Open in IMG/M
3300009147|Ga0114129_10754008All Organisms → cellular organisms → Bacteria1246Open in IMG/M
3300009156|Ga0111538_13087085All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300010399|Ga0134127_11082539All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300010400|Ga0134122_10021044All Organisms → cellular organisms → Bacteria4899Open in IMG/M
3300010400|Ga0134122_10189083All Organisms → cellular organisms → Bacteria1701Open in IMG/M
3300010401|Ga0134121_11618692All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium668Open in IMG/M
3300010403|Ga0134123_12159403All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300012204|Ga0137374_10154497All Organisms → cellular organisms → Bacteria2043Open in IMG/M
3300012350|Ga0137372_10254011All Organisms → cellular organisms → Bacteria1381Open in IMG/M
3300012360|Ga0137375_10058352All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4156Open in IMG/M
3300012532|Ga0137373_10407901All Organisms → cellular organisms → Bacteria1054Open in IMG/M
3300012685|Ga0137397_10329895All Organisms → cellular organisms → Bacteria1137Open in IMG/M
3300012903|Ga0157289_10149332All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300012912|Ga0157306_10260947All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300012922|Ga0137394_10111120All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2314Open in IMG/M
3300012922|Ga0137394_11435067All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium550Open in IMG/M
3300012922|Ga0137394_11446527All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium547Open in IMG/M
3300012944|Ga0137410_10503814All Organisms → cellular organisms → Bacteria990Open in IMG/M
3300012944|Ga0137410_11335390All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300012960|Ga0164301_11811941All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300014745|Ga0157377_10007159All Organisms → cellular organisms → Bacteria5368Open in IMG/M
3300015245|Ga0137409_10777466All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium792Open in IMG/M
3300015372|Ga0132256_100865387All Organisms → cellular organisms → Bacteria1020Open in IMG/M
3300015374|Ga0132255_103800412All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300017792|Ga0163161_11768840All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300018054|Ga0184621_10323569All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300018056|Ga0184623_10049595All Organisms → cellular organisms → Bacteria1915Open in IMG/M
3300018063|Ga0184637_10315438All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia945Open in IMG/M
3300022756|Ga0222622_10246696All Organisms → cellular organisms → Bacteria1208Open in IMG/M
3300022880|Ga0247792_1105744All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300023066|Ga0247793_1083328All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium546Open in IMG/M
3300023072|Ga0247799_1057918All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300025899|Ga0207642_10412944All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium810Open in IMG/M
3300025899|Ga0207642_10685632All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300025899|Ga0207642_11039594All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300025900|Ga0207710_10110594All Organisms → cellular organisms → Bacteria1304Open in IMG/M
3300025910|Ga0207684_10039011All Organisms → cellular organisms → Bacteria4030Open in IMG/M
3300025921|Ga0207652_11841065All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300025922|Ga0207646_10028935All Organisms → cellular organisms → Bacteria5040Open in IMG/M
3300025931|Ga0207644_10698759All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium846Open in IMG/M
3300025933|Ga0207706_11381612All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300025972|Ga0207668_10978501All Organisms → cellular organisms → Bacteria755Open in IMG/M
3300025981|Ga0207640_10146994All Organisms → cellular organisms → Bacteria1726Open in IMG/M
3300026075|Ga0207708_11637527All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300026089|Ga0207648_11213454All Organisms → cellular organisms → Bacteria → Acidobacteria708Open in IMG/M
3300026304|Ga0209240_1072102All Organisms → cellular organisms → Bacteria → Acidobacteria1284Open in IMG/M
3300026319|Ga0209647_1121417All Organisms → cellular organisms → Bacteria1195Open in IMG/M
3300027875|Ga0209283_10499914All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300027880|Ga0209481_10721729All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300027882|Ga0209590_10576680All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300027909|Ga0209382_10002739All Organisms → cellular organisms → Bacteria25135Open in IMG/M
3300027909|Ga0209382_10089315All Organisms → cellular organisms → Bacteria3621Open in IMG/M
3300028380|Ga0268265_10358934All Organisms → cellular organisms → Bacteria1333Open in IMG/M
3300028589|Ga0247818_11045982All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300028819|Ga0307296_10749861All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300028828|Ga0307312_10236017All Organisms → cellular organisms → Bacteria1181Open in IMG/M
3300028828|Ga0307312_10839954All Organisms → cellular organisms → Bacteria → Acidobacteria609Open in IMG/M
3300028885|Ga0307304_10173070All Organisms → cellular organisms → Bacteria912Open in IMG/M
3300031184|Ga0307499_10274117All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300031226|Ga0307497_10447149All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300031229|Ga0299913_10023138All Organisms → cellular organisms → Bacteria5775Open in IMG/M
3300031366|Ga0307506_10309189All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium621Open in IMG/M
3300031366|Ga0307506_10376297All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300031538|Ga0310888_10598695All Organisms → cellular organisms → Bacteria → Acidobacteria669Open in IMG/M
3300031908|Ga0310900_10147858All Organisms → cellular organisms → Bacteria1586Open in IMG/M
3300031965|Ga0326597_10405296All Organisms → cellular organisms → Bacteria1514Open in IMG/M
3300032002|Ga0307416_102200485All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300032013|Ga0310906_11237155All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300032122|Ga0310895_10024592All Organisms → cellular organisms → Bacteria1991Open in IMG/M
3300032770|Ga0335085_11428413All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300033433|Ga0326726_11688127All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300033550|Ga0247829_10875411All Organisms → cellular organisms → Bacteria747Open in IMG/M
3300033803|Ga0314862_0083492All Organisms → cellular organisms → Bacteria → Acidobacteria726Open in IMG/M
3300033803|Ga0314862_0177441All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300034090|Ga0326723_0020190All Organisms → cellular organisms → Bacteria → Proteobacteria2716Open in IMG/M
3300034151|Ga0364935_0135621All Organisms → cellular organisms → Bacteria → Acidobacteria773Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere16.42%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil12.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil8.96%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere8.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.48%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.73%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.73%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.99%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.24%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.24%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.24%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland1.49%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.49%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.49%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere1.49%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.49%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.75%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil0.75%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.75%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.75%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.75%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.75%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.75%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.75%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.75%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.75%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.75%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.75%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.75%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.75%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.75%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.75%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.75%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006353Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5Host-AssociatedOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012903Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300022880Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6EnvironmentalOpen in IMG/M
3300023066Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6EnvironmentalOpen in IMG/M
3300023072Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300031184Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_SEnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031229Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38EnvironmentalOpen in IMG/M
3300031366Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_SEnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031965Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300033803Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10EnvironmentalOpen in IMG/M
3300034090Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00NEnvironmentalOpen in IMG/M
3300034151Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10214J12806_1172680513300000891SoilPVPDDDERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY*
JGI1027J12803_10008214513300000955SoilTVAPDDDERVPIFGTWPRIYAAVILCELAVMALIAAFSHWKY*
JGI25614J43888_1021327923300002906Grasslands SoilMSVGPEEDTMPVTMAPDEDERVPIFGTWPRIYAAVILCALAVMGLVAVFSSWKY*
soilH2_1027946523300003324Sugarcane Root And Bulk SoilMQPTPRSAAPDDDERVPVFGTWPAIYTAVIATAITVMGLIAVFTNWPW*
Ga0062593_10179856223300004114SoilMSVGMQEDTMPPTSAAPDDDERVPIFGTWARIYAAVILCELVSMALIALFSAWKY*
Ga0062589_10195832423300004156SoilSIMSVGPVEDAMPAPSTTPDDDERVPIFGTWPRIYAAVILCELAVMALIALFSAWKY*
Ga0062589_10229766423300004156SoilMSVGPEEDTMPATSAPPDDDEHVPIFGTWPRIYAAVILCALAVMGLIAVFSGWKY*
Ga0063356_10248886423300004463Arabidopsis Thaliana RhizosphereMSVGSQEDTMPAPRAAPDDDERVPIFGTWARIYAAVILCELVSMALIAVFSAWKY*
Ga0062592_10090405313300004480SoilMPATTPVPDDDERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY*
Ga0062594_10012405823300005093SoilMSVGFQEDRMPATTPVPDDDERVPIFGTWPRIYAAVILCELASMALIALFSSWNY*
Ga0066683_1063574923300005172SoilMPVTMAPDEDERVPIFGTWPRIYAAVILCALAVMGLIAVFSAWKY*
Ga0065715_1102800623300005293Miscanthus RhizosphereMPAPTVAPDDDERVPIFGTWPRIYAAVILCELAVMALIALFSTWKY*
Ga0070690_10015617423300005330Switchgrass RhizosphereMPAPTVAPDDDERVPIFGTWPRIYAAVILCELAVMALIALFSSWKY*
Ga0070690_10145835223300005330Switchgrass RhizosphereMPATTPVPDDEERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY*
Ga0070668_10023184123300005347Switchgrass RhizosphereMPATTPVPDDDERVPIFGTWPRIYAAVILCELASMALIALFSSWNY*
Ga0070671_10188473523300005355Switchgrass RhizosphereMPAPTVAPDDDERVPIFGTWPRIYAAVILCELTVMALIALFSSWKY*
Ga0070674_10066294523300005356Miscanthus RhizosphereMDDPDHRVPIFRTWPRIYAAVIVVNVAAIALVALFAAWPF*
Ga0070659_10097072813300005366Corn RhizosphereMSVGFQEDRMPATTPVPDDEERVPIFGTWPRIYAAVILCELAVMALIALFSTWKY*
Ga0070703_1047824113300005406Corn, Switchgrass And Miscanthus RhizosphereEDRMPATTPVPDDDERVPIFGTWPRIYAAVILCELASMALIALFSSWNY*
Ga0070707_10211632013300005468Corn, Switchgrass And Miscanthus RhizosphereMPAPTVAPDDDERVPIFGTWPRIYAAVILCELVVMALIALFSHWKY*
Ga0070698_10062535223300005471Corn, Switchgrass And Miscanthus RhizosphereARSSSAHNVRRPQEDTMPVTMAPDEDERVPIFGTWPRIYAAVILCALAVMGLIAVFSSWKY*
Ga0070698_10192398423300005471Corn, Switchgrass And Miscanthus RhizosphereRSSSAHNVRRPQEDTMPVTMAPDEDERVPIFGTWPRIYAAVIVCALAVMGLIAVFSGWKY
Ga0070699_10179290523300005518Corn, Switchgrass And Miscanthus RhizosphereMPVTMAPDEDERVPIFGTWPRIYAAVILCALAVMGLIAVFSSWKY*
Ga0070697_10078299123300005536Corn, Switchgrass And Miscanthus RhizosphereMSLGPEEHTMPATNPARDDDERVPIFGTWPRIYAAVILCELVVMALIALFSHWKY*
Ga0070697_10204598223300005536Corn, Switchgrass And Miscanthus RhizosphereMPVTTAPDEDERVPIFRTWPRIYAAVILCALAVMGLIAVFSSWKY*
Ga0070695_10051653713300005545Corn, Switchgrass And Miscanthus RhizosphereMSVGFQEDRMPATTPVPDDDERVPIFGTWPRIYAAVILCELAVMALIALFSTWKY*
Ga0070693_10101301223300005547Corn, Switchgrass And Miscanthus RhizosphereMTVGPREDTMPATETAPDDEERVPIFGTWPRIYAAVILCELASLALIALFSSWKY*
Ga0066695_1059225223300005553SoilEQVPIFRTWPRIYAAVIVCAVVVMALIGVFSAWPW*
Ga0066695_1078659413300005553SoilARSSSAHNVRRPEEDTMPVTMAPDEHERVPIFGTWPRIYAAVIVCAVAVMALVALFSSFHY*
Ga0066705_1003725223300005569SoilMERPPDSPEPDEQEPVPIFGTWPRIYAAVIVCTLVAMGLIALFASWDY*
Ga0068866_1074710423300005718Miscanthus RhizosphereMDDPDDRVPIFRTWPRIYAAVIVVNVAAIALVALFAAWPF*
Ga0075417_1061354513300006049Populus RhizosphereMDEHDEEVPIFRTWPRIYAAVIVCAVVVMALIGVFSKWPW*
Ga0075432_1052511813300006058Populus RhizosphereAPDEDERVPIFGTWPRIYAAVIVCALAVMGLIAVFSSWKY*
Ga0075370_1038284913300006353Populus EndosphereMPATTPVPDDDERVPIFGTWPRIYAAVILCELAVMALIALFSAWKY*
Ga0075370_1085083413300006353Populus EndosphereERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY*
Ga0079222_1184926123300006755Agricultural SoilTPAPDDDERVPIFGTWPRIYAAVILCELVAMALIALFSSWNY*
Ga0075428_10056447523300006844Populus RhizosphereMPATTPMPDDEERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY*
Ga0075421_100003047183300006845Populus RhizosphereMAVGPEEDTMPAPSPAPDDAENVPIFGTWPRIYAAVILCELVSMALIALFSAWKY*
Ga0075421_10016825833300006845Populus RhizosphereMPVTMPAPDDEERVPIFGTWPRIYAAVILCELVTMGLIAIFSSWNY*
Ga0075421_10152181023300006845Populus RhizosphereMPVSPAAPDDDERVPIFGTWPRIYAAVILCALAVMGLIAVFSGWKY*
Ga0075431_10131870123300006847Populus RhizosphereMTVGPREDTMPATDAAPDDEERVPIFGTWPRIYAAVLLCELVSLALIALFSSWNY*
Ga0075433_1022236923300006852Populus RhizosphereMSVGPEEDTMPAPTPAPDDDERVPIFGTWPRIYAAVIFCELGVMALIAVFSHWKY*
Ga0075433_1093754823300006852Populus RhizosphereMPVTMAPDEDERVPIFRTWPRIYAAVILCALAVMGLIAVFSSWKY*
Ga0075425_10307741823300006854Populus RhizosphereDERVPIFGTWPRIYAAVIVCELAVMALIALFSHWKY*
Ga0075434_10125392223300006871Populus RhizosphereMPAPTVAPDDDERVPIFGTWPRIYAAVILCELAVMALIALFSAWKY*
Ga0079215_1056996823300006894Agricultural SoilMSVGPEEDTMPATSAAPDDDERVPIFGTWPRIYAAVILCALAVMGLIAVFSGWKY*
Ga0075424_10057898623300006904Populus RhizosphereDERVPIFGTWPRIYAAVILCELASLALIALFSSWNY*
Ga0079219_1165587113300006954Agricultural SoilSSWTPAPDGDERVPIFGTWPRIYAAVILCELVAMALIALFSSWNY*
Ga0075419_1135833723300006969Populus RhizosphereMSVGPQEDTMPPTSAAPDDDERVPIFGTWARIYAAVILCALAVMGLIAVFSGWKY*
Ga0079218_1208093523300007004Agricultural SoilMDEERDERVPIFGTWPRIYAAVIVCNLVSMALIALFSAWNF*
Ga0099794_1027780223300007265Vadose Zone SoilMSVGPEEDTMAVTTPAPDDDERLPIFGTWPRIYAAVILCALAVMGLIAVFSSWKY*
Ga0099828_1062382113300009089Vadose Zone SoilAGDDHDPVPIFGTWPRIYAAVIICALSVMGLIALFSSWKY*
Ga0099827_1049699723300009090Vadose Zone SoilMPVTTAPDDDERVPIFGTWPRIYAAVILCALAVMGLIAVFSSWKY*
Ga0111539_10000712163300009094Populus RhizosphereMSVGLQEDRMPATTPVPDDEERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY*
Ga0075418_1017025313300009100Populus RhizosphereMSVGLQEDRMPATTPMPDDEERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY*
Ga0075418_1159366723300009100Populus RhizosphereMAVGLQEDRMPATTPMPDDDERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY*
Ga0114129_1031226613300009147Populus RhizosphereMAVGPEEDTMPAPSPAPDDAENVPIFGTWPRIYAAVILCELVSMALIALFSA
Ga0114129_1075400823300009147Populus RhizosphereMSVGLQEDRMPATTPMPDDEERVPIFGTWPRIYAAVILCELVSMALIALFSAWKY*
Ga0111538_1308708513300009156Populus RhizosphereMSVGFQEDRMPATTPVPDDDERVPIFGTWPRIYAAVILCELAVMALIALFSSWNY*
Ga0134127_1108253923300010399Terrestrial SoilMSVGSQEDAMPATTPVPDDDERVPIFGTWPRIYAAVILCELACLALIALFSSWKY*
Ga0134122_1002104423300010400Terrestrial SoilMSVGFQEDRMPATTPVPDDDERVPIFGTWPRIYAAVMLCELASMALIALFSSWNY*
Ga0134122_1018908323300010400Terrestrial SoilMTVGPREDTMPATETAPDDEERVPIFGTWPRIYAAVILCELASLALIALFSSWNY*
Ga0134121_1161869213300010401Terrestrial SoilMPAPTVAPDDDERVPIFGTWPRIYAAVILCELVVMALIALFSTWKY*
Ga0134123_1215940313300010403Terrestrial SoilGRPEGGHDAATETAPDDEERVPIFGTWPRIYAAVILCELASLALIALFSSWNY*
Ga0137374_1015449723300012204Vadose Zone SoilMPVTMAPDEGERVPIFGTWPRIYAAVILCALAVMGLIAVFSSWKY*
Ga0137372_1025401123300012350Vadose Zone SoilMPATSPAPDDDERVPIFGTWPGIYAAVILCALAVMGLIAVFSSWKY*
Ga0137375_1005835233300012360Vadose Zone SoilMPVTMAPDDDERVPIFGTWPRIYAAVILCALAVMALIAVFSSWKY*
Ga0137373_1040790123300012532Vadose Zone SoilMPVTMAPDEGERVPIFGTWPRIYAAVILCALAVMALIAVFSSWKY*
Ga0137397_1032989513300012685Vadose Zone SoilAPTVAPDDDERVPIFGTWPRIYAAVILCALAVMALIAVFSGWKY*
Ga0157289_1014933223300012903SoilMAVGPRRTPMPAPTVAPDDDERVPIFGTWPRIYAAVILCELAVMALIALFSSWKY*
Ga0157306_1026094713300012912SoilREDTMPATDAEPDDEERVPIFGTWPRIYAAVILCELAVMALIALFSTWKY*
Ga0137396_1043967533300012918Vadose Zone SoilMNDDEAERVPIFGTWPRIYAAVVLCAVVVMALVYLFSVWPY*
Ga0137394_1011112033300012922Vadose Zone SoilAPDDDERVPIFGTWPRIYAAVILCALAVMGLIAVFSSWKY*
Ga0137394_1143506723300012922Vadose Zone SoilMSVGPEEDTMPATSAAPDDDERVPIFGTWPRIYAAVILCALAVMGLIAVFSSWKY*
Ga0137394_1144652723300012922Vadose Zone SoilMPAPTVAPDDDERVPIFGTWPRIYAAVILCALAVMGLIAVFSSWKY*
Ga0137410_1050381423300012944Vadose Zone SoilMSVGPEEDMMPATSAAPDDDERVPIFGTWPRIYAAVILCALAVMGLIAVFSAWKY*
Ga0137410_1133539023300012944Vadose Zone SoilMPAPTVAPDDDERVPIFGTWPRIYAAVILCALAVMALIAVFSGWKY*
Ga0164301_1181194113300012960SoilMAVGPRRTPMPAPTVAPDDDERVPIFGTWPRIYAAVILCELAVMALIAAFSHWKF*
Ga0157377_1000715923300014745Miscanthus RhizosphereMSVGLQEDRMPATTPVPDDDERVPIFGTWPRIYAAVILCELASMALIALFSSWNY*
Ga0137409_1077746623300015245Vadose Zone SoilMSVGPEEDMMPATSAAPDDDERVPIFGTWPRIYAAVILCALAVMGLIAVFSSWKY
Ga0132256_10086538723300015372Arabidopsis RhizosphereDDEERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY*
Ga0132255_10380041213300015374Arabidopsis RhizospherePVPDDDERVPIFGTWPRIYAAVILCELVSMALIAVFSAWNY*
Ga0163161_1176884013300017792Switchgrass RhizosphereDEERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY
Ga0184621_1032356913300018054Groundwater SedimentGDQGPRARVTSIMSVGSEEDTIPVSPAAPDDDEHVPIFGTWPRIYAAVILCALAIMGLIAVFSSWKY
Ga0184623_1004959513300018056Groundwater SedimentMDEEPDERVPIFGTWPRIYAAVIVCNLAVMALIALFSAWNF
Ga0184637_1031543823300018063Groundwater SedimentMDEEPDERVPIFGTWPRIYAAVIVCNLAVMALIALFSAWNY
Ga0222622_1024669623300022756Groundwater SedimentMSVGPEEDTMPVSPAAPDDDEHVPIFGTWPRIYAAVIFCALAIMGLIAVFSSWKY
Ga0247792_110574423300022880SoilMSVGLQEDRMPATTPVPDDDERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY
Ga0247793_108332823300023066SoilMSVGMQEDTMPPTSAAPDDDERVPIFGTWARIYAAVILCELVSMALIALFSAWKY
Ga0247799_105791823300023072SoilQGPPARVAPIMSVGMQEDTMPPTSAAPDDDERVPIFGTWARIYAAVILCELVSMALIALFSAWKY
Ga0207642_1041294423300025899Miscanthus RhizosphereMPATTPVPDDDERVPIFGTWPRIYAAVILCELAVMVLIALFSSWKY
Ga0207642_1068563223300025899Miscanthus RhizosphereMDDPDDRVPIFRTWPRIYAAVIVVNVAAIALVALFAAWPF
Ga0207642_1103959423300025899Miscanthus RhizosphereAPDDDERVPIFGTWPRIYAAVILCELAVMVLIALFSSWKY
Ga0207710_1011059413300025900Switchgrass RhizosphereMSVGFQEDRMPATTPVPDDDERVPIFGTWPRIYAAVILCELASMALIALFSSWNY
Ga0207684_1003901133300025910Corn, Switchgrass And Miscanthus RhizosphereMPVTMAPDEDERVPIFATWPRIYAAVIVCALAVMGLIAVFSGWKY
Ga0207652_1184106513300025921Corn RhizosphereIMSVGFQEDRMPATTPVPDDDERVPIFGTWPRIYAAVILCELASMALIALFSSWNY
Ga0207646_1002893523300025922Corn, Switchgrass And Miscanthus RhizosphereMPVTMAPDEDERVPIFGTWPRIYAAVIVCALAVMGLIAVFSGWKY
Ga0207644_1069875923300025931Switchgrass RhizosphereMPAPTVAPDDDERVPIFGTWPRIYAAVILCELTVMALIALFSSWKY
Ga0207706_1138161223300025933Corn RhizosphereMPATTPVPDDDERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY
Ga0207668_1097850123300025972Switchgrass RhizosphereTTPVPDDEERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY
Ga0207640_1014699423300025981Corn RhizosphereMPAPTVAPDDDERVPIFGTWPRIYAAVILCELASMALIALFSSWNY
Ga0207708_1163752723300026075Corn, Switchgrass And Miscanthus RhizosphereMPATTPVPDDEERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY
Ga0207648_1121345423300026089Miscanthus RhizosphereMPAPTVAPDDDERVPIFGTWPRIYAAVILCELAVMALIALFSAWKY
Ga0209240_107210223300026304Grasslands SoilMPVTTAPDDDERVPIFGTWPRIYAAVILCALAVMGLIAVFSSWKY
Ga0209647_112141723300026319Grasslands SoilMPVTMAPDEDERVPIFGTWPRIYAAVILCALAVMGLVAVFSSWKY
Ga0209283_1049991423300027875Vadose Zone SoilVDDDDEPVPIFGTWPRIYAAVALCAVVVMALVYVFSVWPY
Ga0209481_1072172923300027880Populus RhizosphereDDEERVPIFGTWPRIYAAVILCELVSMALIALFSSWNY
Ga0209590_1057668013300027882Vadose Zone SoilPFSCRRPRAARSSSAHNVRRHEEDTMPVTTAPDDDERVPIFGTWPRIYAAVILCALAVMGLIAVFSSWKY
Ga0209382_10002739153300027909Populus RhizosphereMAVGPEEDTMPAPSPAPDDAENVPIFGTWPRIYAAVILCELVSMALIALFSAWKY
Ga0209382_1008931523300027909Populus RhizosphereMPVTMPAPDDEERVPIFGTWPRIYAAVILCELVTMGLIAIFSSWNY
Ga0268265_1035893423300028380Switchgrass RhizosphereMPATTPVPDDDERVPIFGTWPRIYAAVILCELASMALIALFSSWNY
Ga0247818_1104598223300028589SoilARDEGPPARVASIMSVGLQEDRMPATTSVPDDDERVPIFGTWPRIYAAVILCELASMALIALFSVWKY
Ga0307296_1074986113300028819SoilARVAPIMSLGPEEDTMPVTTAPDDDERVPIFGTWPRIYAAVIFCALAVMGLIAVFSGWKY
Ga0307312_1023601723300028828SoilMPVTMAPDEDERVPIFGTWPRIYAAVILCALAVMGLIAVFSGWKY
Ga0307312_1083995423300028828SoilMSVGPEEDTMPATNAAPDDDERVPIFGTWPRIYAAVILCELVSLALIALFSAWKY
Ga0307304_1017307013300028885SoilRVASIMSVGPEEDTMPATNAAPDDDERVPIFGTWPRIYAAVILCELVSLALIALFSAWKY
Ga0307499_1027411723300031184SoilMPATDAAPEDDERVPIFGTWPRIYGAVILCELVAMALIALFSSWNY
Ga0307497_1044714923300031226SoilEDDERVPIFGTWPRIYAAVILCELVSMALIAVFSSWNY
Ga0299913_1002313813300031229SoilMDEPPDDPVPIFGTWPRIYAAVIVWTLANLALIALFSAWAY
Ga0307506_1030918923300031366SoilMAVGPREDTMPATDAAPDDEERVPIFGTWPRIYAAVILCELVSMALIAVFSAWNY
Ga0307506_1037629723300031366SoilDTMPVTSAPPNDDERVPIFGTWPRIYAAVLLCALAVMALIAVFSGWKY
Ga0310888_1059869523300031538SoilMPATTPVPDDDERVPIFGTWPRIYAAVILCELASLALIALFSSWNY
Ga0310900_1014785823300031908SoilDDERVPIFGTWPRIYAAVILCELASMALIALFSSWNY
Ga0326597_1040529623300031965SoilMDEEPDERVPIFGTWPRIYAAVIVCNLAIMALIALFSAWNY
Ga0307416_10220048513300032002RhizosphereMSVGPQEDTMPPTSAAPDDDERVPIFGTWARIYAAVILCALAVMGLIAVFSGWKY
Ga0310906_1123715513300032013SoilMSVGFQEDRMPATTPVPDDEERVPIFGTWPRIYAAVILCELASMALIALFSSWNY
Ga0310895_1002459223300032122SoilMPATTPVPDDDERVTIFGTWPRIYAAVILCELASMALIALFSSWNY
Ga0335085_1142841323300032770SoilVEPPDDERVPLFGTWPRIYAAVILVNLLVLALVALFSAGTY
Ga0326726_1168812723300033433Peat SoilLPDDDHVPIFGTWPRIYAAVVISALAVMALVALFSSWTY
Ga0247829_1087541123300033550SoilMAVPTMQEPPDDPVPVFGTWPRIYAAVILCALFSMALIALFSGWPF
Ga0314862_0083492_368_5083300033803PeatlandVEPAGQPPTDDERVPIFGSWPRIYAAVVLCALAWMGLIAAFQRWPY
Ga0314862_0177441_341_4723300033803PeatlandMDQEGPDEGTVPVFGTWRRIYAAVILTALIAIGLTAVFSHWDY
Ga0326723_0020190_209_3283300034090Peat SoilLPDDDHVPIFGTWPRIYAAVVATALVVMAFVALFSSWPY
Ga0364935_0135621_61_1953300034151SedimentVKEDRPEVEERVPLFGTWPRIYAAVIVNALILMALITVFSRWRY

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.