Metagenome / Metatranscriptome Family F058774

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F058774
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	77 residues
Representative Sequence	FPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKAIYAKFV
Number of Associated Samples	111
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.75 %
% of genes near scaffold ends (potentially truncated)	97.76 %
% of genes from short scaffolds (< 2000 bps)	92.54 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.060 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (8.209 % of family members)
Environment Ontology (ENVO)	Unclassified (26.866 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.284 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.57% β-sheet: 1.94% Coil/Unstructured: 50.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF00005	ABC_tran	20.90
PF13442	Cytochrome_CBB3	11.19
PF00528	BPD_transp_1	8.96
PF08402	TOBE_2	4.48
PF04072	LCM	4.48
PF01436	NHL	2.24
PF00296	Bac_luciferase	2.24
PF03215	Rad17	1.49
PF00106	adh_short	0.75
PF01343	Peptidase_S49	0.75
PF13416	SBP_bac_8	0.75
PF07687	M20_dimer	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG3315	O-Methyltransferase involved in polyketide biosynthesis	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.48
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	2.24
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.49

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.06 %
Unclassified	root	N/A	11.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.06 %
Unclassified	root	N/A	11.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.06 %
Unclassified	root	N/A	11.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.61 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	22.39 %
Unclassified	root	N/A	11.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.24 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	22.39 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.15 %
Unclassified	root	N/A	11.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.24 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	22.39 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.18 %
Unclassified	root	N/A	11.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.24 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	13.43 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.69 %
Unclassified	root	N/A	11.94 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.75 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.43 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.94 %
Unclassified	root	N/A	11.94 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.75 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.43 %
Unclassified	root	N/A	11.94 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	2.24 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.49 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.75 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.75 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.43 %
Unclassified	root	N/A	11.94 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	2.24 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.49 %
Bradyrhizobium sp. G22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	0.75 %
Amycolatopsis methanolica group	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis methanolica group	0.75 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.43 %
Unclassified	root	N/A	11.94 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	2.24 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.49 %
Amycolatopsis thermoflava	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis methanolica group → Amycolatopsis thermoflava	0.75 %
Bradyrhizobium sp. G22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10099130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	596	Open in IMG/M
3300000891\|JGI10214J12806_11347937	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300001915\|JGI24741J21665_1059535	Not Available	563	Open in IMG/M
3300004058\|Ga0055498_10086939	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300004156\|Ga0062589_100664394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	918	Open in IMG/M
3300004156\|Ga0062589_101797778	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300004156\|Ga0062589_102234550	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300004156\|Ga0062589_102340642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	550	Open in IMG/M
3300004157\|Ga0062590_101939349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	609	Open in IMG/M
3300004157\|Ga0062590_102057704	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300005093\|Ga0062594_100007986	All Organisms → cellular organisms → Bacteria	3564	Open in IMG/M
3300005093\|Ga0062594_100696091	All Organisms → cellular organisms → Bacteria → Proteobacteria	916	Open in IMG/M
3300005330\|Ga0070690_100814129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300005332\|Ga0066388_107941583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	531	Open in IMG/M
3300005336\|Ga0070680_100061591	All Organisms → cellular organisms → Bacteria	3072	Open in IMG/M
3300005347\|Ga0070668_100600694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	963	Open in IMG/M
3300005439\|Ga0070711_100143546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1793	Open in IMG/M
3300005440\|Ga0070705_100439347	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300005458\|Ga0070681_11544547	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300005471\|Ga0070698_101562123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	612	Open in IMG/M
3300005529\|Ga0070741_11402068	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300005543\|Ga0070672_100252673	All Organisms → cellular organisms → Bacteria	1485	Open in IMG/M
3300005543\|Ga0070672_101189023	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300005545\|Ga0070695_100448508	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300005546\|Ga0070696_100161800	All Organisms → cellular organisms → Bacteria	1649	Open in IMG/M
3300005546\|Ga0070696_100219528	All Organisms → cellular organisms → Bacteria → Proteobacteria	1426	Open in IMG/M
3300005547\|Ga0070693_100688096	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300005558\|Ga0066698_10222888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1295	Open in IMG/M
3300005598\|Ga0066706_11470296	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300005719\|Ga0068861_102094864	Not Available	565	Open in IMG/M
3300005764\|Ga0066903_100037033	All Organisms → cellular organisms → Bacteria	5668	Open in IMG/M
3300005764\|Ga0066903_100143200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3407	Open in IMG/M
3300005764\|Ga0066903_102415066	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1017	Open in IMG/M
3300005843\|Ga0068860_101925199	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005844\|Ga0068862_102419325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis methanolica group → Amycolatopsis thermoflava	537	Open in IMG/M
3300006845\|Ga0075421_101454460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	752	Open in IMG/M
3300006845\|Ga0075421_102579741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	528	Open in IMG/M
3300006852\|Ga0075433_10414729	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300006854\|Ga0075425_100823073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1063	Open in IMG/M
3300006914\|Ga0075436_100423438	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	967	Open in IMG/M
3300006954\|Ga0079219_11875358	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300009094\|Ga0111539_12437415	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300009094\|Ga0111539_13237283	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300009553\|Ga0105249_13276367	Not Available	521	Open in IMG/M
3300010046\|Ga0126384_10254259	Not Available	1422	Open in IMG/M
3300010359\|Ga0126376_10751252	Not Available	946	Open in IMG/M
3300010359\|Ga0126376_11728047	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	661	Open in IMG/M
3300010360\|Ga0126372_10949264	Not Available	867	Open in IMG/M
3300010362\|Ga0126377_13044395	Not Available	541	Open in IMG/M
3300010397\|Ga0134124_10020012	All Organisms → cellular organisms → Bacteria	5485	Open in IMG/M
3300010397\|Ga0134124_11711372	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300010400\|Ga0134122_10856532	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	874	Open in IMG/M
3300010403\|Ga0134123_12989552	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300012205\|Ga0137362_10523049	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1025	Open in IMG/M
3300012209\|Ga0137379_10838315	Not Available	824	Open in IMG/M
3300012905\|Ga0157296_10167385	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	673	Open in IMG/M
3300012907\|Ga0157283_10359551	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	527	Open in IMG/M
3300012971\|Ga0126369_12579570	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300013297\|Ga0157378_11437734	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	733	Open in IMG/M
3300013297\|Ga0157378_11570910	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300013297\|Ga0157378_12271053	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	594	Open in IMG/M
3300013306\|Ga0163162_11488535	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	771	Open in IMG/M
3300014326\|Ga0157380_10707738	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1013	Open in IMG/M
3300014968\|Ga0157379_11579639	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300015245\|Ga0137409_10801510	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	777	Open in IMG/M
3300015261\|Ga0182006_1236762	Not Available	600	Open in IMG/M
3300015372\|Ga0132256_102317841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	640	Open in IMG/M
3300015372\|Ga0132256_103810571	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300015373\|Ga0132257_100764587	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1204	Open in IMG/M
3300015374\|Ga0132255_102471684	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300015374\|Ga0132255_103782448	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300015374\|Ga0132255_105887373	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300016270\|Ga0182036_11156769	Not Available	642	Open in IMG/M
3300016371\|Ga0182034_10196659	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300016422\|Ga0182039_11076604	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	723	Open in IMG/M
3300017961\|Ga0187778_10047548	All Organisms → cellular organisms → Bacteria	2619	Open in IMG/M
3300018058\|Ga0187766_11141211	Not Available	561	Open in IMG/M
3300018064\|Ga0187773_10659972	Not Available	647	Open in IMG/M
3300018089\|Ga0187774_10159448	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1193	Open in IMG/M
3300018476\|Ga0190274_13447818	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	533	Open in IMG/M
3300018920\|Ga0190273_11456078	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	602	Open in IMG/M
3300019269\|Ga0184644_1335682	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300019377\|Ga0190264_10827248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	710	Open in IMG/M
3300020015\|Ga0193734_1091724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	511	Open in IMG/M
3300021086\|Ga0179596_10404013	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300021178\|Ga0210408_10621626	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300021560\|Ga0126371_13740920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300025325\|Ga0209341_11264630	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300025905\|Ga0207685_10603423	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300025922\|Ga0207646_11027008	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	728	Open in IMG/M
3300025928\|Ga0207700_11147943	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	694	Open in IMG/M
3300025930\|Ga0207701_11141385	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	644	Open in IMG/M
3300025932\|Ga0207690_11023102	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	687	Open in IMG/M
3300025932\|Ga0207690_11276972	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300025937\|Ga0207669_10622642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	880	Open in IMG/M
3300025986\|Ga0207658_11357420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	650	Open in IMG/M
3300026121\|Ga0207683_11315883	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300026142\|Ga0207698_11248558	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300026285\|Ga0209438_1150472	Not Available	613	Open in IMG/M
3300027846\|Ga0209180_10517356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	667	Open in IMG/M
3300027907\|Ga0207428_11221910	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300028380\|Ga0268265_11787455	Not Available	621	Open in IMG/M
3300031538\|Ga0310888_10343849	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	863	Open in IMG/M
3300031546\|Ga0318538_10439567	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300031713\|Ga0318496_10818746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300031720\|Ga0307469_10421736	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1146	Open in IMG/M
3300031720\|Ga0307469_11570740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	631	Open in IMG/M
3300031740\|Ga0307468_100722256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	836	Open in IMG/M
3300031744\|Ga0306918_10200764	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300031768\|Ga0318509_10677132	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300031779\|Ga0318566_10610801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M
3300031797\|Ga0318550_10224790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	910	Open in IMG/M
3300031805\|Ga0318497_10041913	All Organisms → cellular organisms → Bacteria → Proteobacteria	2331	Open in IMG/M
3300031820\|Ga0307473_10698529	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300031879\|Ga0306919_10835330	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300031896\|Ga0318551_10723098	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	577	Open in IMG/M
3300031903\|Ga0307407_10072961	All Organisms → cellular organisms → Bacteria	2049	Open in IMG/M
3300031949\|Ga0214473_10283524	All Organisms → cellular organisms → Bacteria	1896	Open in IMG/M
3300031954\|Ga0306926_10202523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2463	Open in IMG/M
3300031954\|Ga0306926_10815050	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1124	Open in IMG/M
3300032002\|Ga0307416_101433318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	796	Open in IMG/M
3300032003\|Ga0310897_10261514	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	779	Open in IMG/M
3300032005\|Ga0307411_10984468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	754	Open in IMG/M
3300032012\|Ga0310902_11248652	Not Available	524	Open in IMG/M
3300032013\|Ga0310906_10293929	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300032041\|Ga0318549_10547501	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300032063\|Ga0318504_10327935	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300032067\|Ga0318524_10321477	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300032180\|Ga0307471_101643482	Not Available	797	Open in IMG/M
3300033004\|Ga0335084_10117737	All Organisms → cellular organisms → Bacteria	2762	Open in IMG/M
3300033004\|Ga0335084_11972375	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	569	Open in IMG/M
3300033551\|Ga0247830_10813301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	744	Open in IMG/M
3300034818\|Ga0373950_0116110	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300034819\|Ga0373958_0209982	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.40%
Host-Associated	Host-Associated	30.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.91%
Plants	Host-Associated → Plants	30.60%
Aquatic	Environmental → Aquatic	1.49%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.96%
Freshwater	Environmental → Aquatic → Freshwater	0.75%
Marine	Environmental → Aquatic → Marine	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Loam	Environmental → Terrestrial → Soil → Loam	13.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.43%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.22%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.99%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.75%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.75%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.16%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.21%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.48%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.99%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.75%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.75%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.73%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.99%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.24%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.49%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.49%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.49%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.49%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.49%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.49%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.75%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.75%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001915	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7	Host-Associated	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015261	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_100991301	3300000891	Soil	ISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWGEEKIKAIYAKFA*
JGI10214J12806_113479372	3300000891	Soil	ASTGYDTPFLKTFAKGPLPVISEDPKLKPLEKSPEYHYTMGYPGPCSAAADEVYQQFIMIDAVAQFCTDKMDLEQTVKWGEDKLKAIYSKFV*
JGI24741J21665_10595352	3300001915	Corn Rhizosphere	KPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWGEEKIKAIYAKFA*
Ga0055498_100869392	3300004058	Natural And Restored Wetlands	KLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWAEEKIKAIYAKF*
Ga0062589_1006643942	3300004156	Soil	DPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKLDLEQTIKWGEEKIKSIYAKFA*
Ga0062589_1017977782	3300004156	Soil	YDMPFLRDYAKGPYPIISEDPKLKPLEQDTEYHFTTGYPGPLTVPADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEDKIKAIYAKSA*
Ga0062589_1022345502	3300004156	Soil	DPKLKPLEQDAEYHFTTGYPGTLTPAADEVYQQFVMVDALAQFCADKLDLEGAVRWGEEKIKSIYGKFA*
Ga0062589_1023406422	3300004156	Soil	KPLEQDAEYHFTTGYPGPLTPAADEVYQQFILVDALAQYCVDKLDLEAAVKWGEEKIKAIHAKFA*
Ga0062590_1019393491	3300004157	Soil	PFLKGYAKGPLPIISEDPKLKLLEKSPEYHFTQGYPGPVTAASDEVYQQFVMIDACAQFCSDKMDLEQTVKWAEEKIKGIYAKFV*
Ga0062590_1020577042	3300004157	Soil	AKPPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFILVDALAQYCVDKLDLEAAVKWGEEKIKAIHAKFA*
Ga0062594_1000079861	3300005093	Soil	SEDPKLKPLEKSPEYHYTMGYPGPCSAAADEVYQQFIMIDAVAQFCTDKMDLEQTVKWGEDKLKAIYSKFV*
Ga0062594_1006960912	3300005093	Soil	KTYAKGPLPIISEDPKLKVLEKSPEYHYTIGYPGPLTVAADEVYQQFVLIDAAAQFCTDKMDLEQTIKWGEDKLKAIYSKFV*
Ga0070690_1008141291	3300005330	Switchgrass Rhizosphere	ISEDPKLKVLEKSPEYHYTIGYPGPLTVAADEVYQQFVLIDAAAQFCTDKMDLEQTIKWGEDKLKAIYAKFI*
Ga0066388_1079415831	3300005332	Tropical Forest Soil	EQDADYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWADEKIKAIYAKFA*
Ga0070680_1000615915	3300005336	Corn Rhizosphere	IISEDPKLKVLEKSPEYHYTIGYPGPLTVAADEVYQQFVLIDAAAQFCTDKMDLEQTIKWGEDKLKAIYSKFV*
Ga0070668_1006006941	3300005347	Switchgrass Rhizosphere	KLKPLEQDADYHFTTGYPGPLTAAADEVYQQFVMVDALAQYCVDKLDLEAAVKWGEEKIKAIHAKFA*
Ga0070711_1001435463	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	KPLEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQFCTDKMDLEQTVKWGEEKIKGVHAKFA*
Ga0070705_1004393473	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	AKGPLPIISEDPKLKPLEKSPEYHYTMGYPGPCTVAADEVYQQFVMIDAVAQFCTDKMDLEQTVKWGEDKIKAIYSKFV*
Ga0070681_115445471	3300005458	Corn Rhizosphere	PKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQFCTDKMDLEQTVKWADEKIKAIYAKF*
Ga0070698_1015621231	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	EDPKLKLLEKSPEYHFTQGYPGPVTAASDEVYQQFVMIDACAQFCADKMDLEQTVKWAEEKIKGIYAKFV*
Ga0070741_114020681	3300005529	Surface Soil	EDPKLKVLEKSPEYHYTIGYPGPLTVAADEVYQQFVLIDAVAQFCTDKMDLEQTVKWSEDKLKAIYAKFA*
Ga0070672_1002526732	3300005543	Miscanthus Rhizosphere	FMKNYAKPPFPIISEDPKLKPLEQDADYHFTTGYPGPLTAAADEVYQQFVLVDALAQYCVDKLDLEAAVKWGEEKIKAIHAKFA*
Ga0070672_1011890232	3300005543	Miscanthus Rhizosphere	DAFRASTGYDTPFLKTFAKGPLPVISEDPKLKPLEKSPEYHYTMGYPGPCSAAADEVYQQFIMIDAVAQFCTDKMDLEQTVKWGEDKLKAIYSKFV*
Ga0070695_1004485081	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	KGPLPIVSEDPKLKPLEKSPEYHYTMGYPGPCSAAADEVYQQFIMIDAVAQFCTDKMDLEQTVKWGEDKLKAIYSKFV*
Ga0070696_1001618001	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	PIISEDPKLKPLEQDTEYHFTTGYPGPLTVPADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEDKIKAIYAKSA*
Ga0070696_1002195284	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	EDPKLKVLEKSPEYHYTIGYPGPLTVAADEVYQQFILIDAAAQFCTDKMDLEQTIKWGEDKLKAIYAKSI*
Ga0070693_1006880962	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	PKLKPLEKSPEYHYTMGYPGSCSAAADEVYQQFIMIDAVAQFCTDKMDLEQTVKWGEDKLKAIYSKFV*
Ga0066698_102228882	3300005558	Soil	PIISEDPKLKPLEKSPEYHYTMGYPGPCSPAADEVYQQFVMIDAVAQFCTDKMDLETTIKWGEDRIRAIYAKFA*
Ga0066706_114702961	3300005598	Soil	EDPRLKPLEQDADYHFTMGYPGTLTSAAEEVYRQFIMVDALAQFCTDKLDLESAIKWGEEKIKAVYAKFA*
Ga0068861_1020948641	3300005719	Switchgrass Rhizosphere	ASTGYDNPFLKTFAKGPLPIISEDPKLKVLEKSPEYHYTIGYPGPLTVAADEVYQQFVLIDAAAQFCTDKMDLEQTIKWGEDKLKAIYAKFI*
Ga0066903_1000370339	3300005764	Tropical Forest Soil	LKPLEKSPEYHFTMGYPGPCSPAADEVYQQFVMIDAVAQFCTDKMDLETTIKWGEDKIKAIYAKFA*
Ga0066903_1001432004	3300005764	Tropical Forest Soil	YAKPPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDAVAQFATDKMDLEQTVKWAEDKIKAIYGKFV*
Ga0066903_1024150662	3300005764	Tropical Forest Soil	KVLEKSPEYHVTVGYPGPLTPAADEVYQQFVMIDAAAQFCTDKMDLEATIKWGEEKIRGIYAKFV*
Ga0068860_1019251991	3300005843	Switchgrass Rhizosphere	AKPPFPVISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWAEDKIKAVYAKYV*
Ga0068862_1024193251	3300005844	Switchgrass Rhizosphere	KVLEKSPEYHYTIGYPGPLTVAADEVYQQFVLIDAAAQFCTDKMDLEQTIKWGEDKLKAIYAKFI*
Ga0075421_1014544602	3300006845	Populus Rhizosphere	PFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCVDKMDLEQAVKWGEEKIKSVYAKFA*
Ga0075421_1025797411	3300006845	Populus Rhizosphere	LTDNFKDAFRASTGYDNPFLKEFAKGPLPIISEDPKLKLLEKSPEYHYTIGYPGPLTPAADEVYQQFVLIDAAAQFCADKMDLEQTIKWGEDKLKSIYAKFV*
Ga0075433_104147292	3300006852	Populus Rhizosphere	LKNYAKPPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQFATDKMDLEQTVKWAEDKIKAVYAKYV*
Ga0075425_1008230732	3300006854	Populus Rhizosphere	AFRASTGYDTPFLKDFAKGPLPIISEDPKLKPLEKSPEYHFTMGYPGPCSPAADEVYQQFVMIDAVAQFCTDKMDLETTIKWGEDRIRAIYAKFA*
Ga0075436_1004234381	3300006914	Populus Rhizosphere	FAKGPLPIISEDPKLKPLEKSPEYHFTMGYPGPCTPAADEVYQQFVMVDALAQFCTDKMDLETTIKWGEDKIKAIYAKFA*
Ga0079219_118753581	3300006954	Agricultural Soil	EKSPEYHYTVGYPGPLTPAADEVYQQFVMIDTVAQFCSDRLDLEAAVKWGEEKIRGIYAKFA*
Ga0111539_124374152	3300009094	Populus Rhizosphere	SKPPLPIISEDPKLKPLEQDAEYHFTTGFPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWAEDKIKAIYAKFV*
Ga0111539_132372831	3300009094	Populus Rhizosphere	PKLKPLEQDADYHFTTGYPGPLTPAADEVYQQFVMVDALAQYCVDKLDLEAAVKWGEEKIKAIHAKFA*
Ga0105249_132763671	3300009553	Switchgrass Rhizosphere	FLKTFAKGPLPIISEDPKLKVLEKSPEYHYTIGYPGPLTVAADEVYQQFILIDAAAQFCTDKMDLEQTIKWGEDKLKAIYAKFI*
Ga0126384_102542592	3300010046	Tropical Forest Soil	PFPIISEDPKLKPLEQDADYHFTTGYPGPLTVPADEVYQQFVMVDALAQFCTDKMDLETTVKWGDEKIKAIYAKSV*
Ga0126376_107512521	3300010359	Tropical Forest Soil	SDDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKGIHAKFA*
Ga0126376_117280471	3300010359	Tropical Forest Soil	FPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWAEDKIKAIYGKFV*
Ga0126372_109492641	3300010360	Tropical Forest Soil	KPPFPVISDDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKGIHAKFA*
Ga0126377_130443952	3300010362	Tropical Forest Soil	SEDPKLKPLEKSPEYHFTMGYPGPCSPAADEVYQQFVMVDALAQFCTDKMDLETTIKWGEDKIKAIYAKFA*
Ga0134124_100200121	3300010397	Terrestrial Soil	TDNFKEAFRASTGYDTPFLKDFAKGPLPIISEDPKLKPLEKSPEYHFTMGYPGPCSPAADEVYQQFVMIDAVAQFCTDKMDLEATIKWGEDRIRAIYAKFA*
Ga0134124_117113721	3300010397	Terrestrial Soil	KPPLPVISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDATAQFCTDKLDLEATIKWGEEKIKAIYSKFA*
Ga0134122_108565321	3300010400	Terrestrial Soil	AKPPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWAEDKIKAVYAKYV*
Ga0134123_129895522	3300010403	Terrestrial Soil	KGYAKPPLPIISENPKFKPLEQDAEYHFTVGYPGALTPAADEVYQQFVMVDALAQFCTDKMDLEATIKWGEDKIKAVYAKFV*
Ga0137362_105230491	3300012205	Vadose Zone Soil	NYAKPPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQFATDKMDLEQTIKWGEEKIKAIYAKFV*
Ga0137379_108383151	3300012209	Vadose Zone Soil	LVALTSAGASFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQFATDKMDLEQTIKWGEEKIKAIYAKFV*
Ga0157296_101673851	3300012905	Soil	KFKPLEQDAEYHYTVGYPGPLTPAADEVYQQFVMVDAIAQFATDKMDLEQTIKWGEEKIKAIYAKFA*
Ga0157283_103595511	3300012907	Soil	AKGPYPIISEDPKLKPLEQDTEYNFTTGYPGPLTVPADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEDKIKAIYSKFV*
Ga0126369_125795701	3300012971	Tropical Forest Soil	FPIISEDPKLKPLEQDADYHFTTGFPGPLTPAADEVYQQFVMVDALAQFCVDKLDLEGAVKWGEEKIKAIYAKFA*
Ga0157378_114377341	3300013297	Miscanthus Rhizosphere	PFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWGEEKIKAIYAKFA*
Ga0157378_115709101	3300013297	Miscanthus Rhizosphere	KNYAKPPFPVISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQYCVDKLDLEAAVKWGEEKIKAIHAKFA*
Ga0157378_122710531	3300013297	Miscanthus Rhizosphere	KGPLPIISEDPKLKVLEKSPEYHYTIGYPGPLTVAADEVYQQFVLIDAAAQFCTDKMDLEQTIKWGEDKLKAIYSKFV*
Ga0163162_114885353	3300013306	Switchgrass Rhizosphere	ISEDPKLKPLEKSPEYHYTMGYPGPCSAAADEVYQQFIMIDAVAQFCTDKMDLEQTVKWGEDKLKAIYSKFV*
Ga0157380_107077382	3300014326	Switchgrass Rhizosphere	SEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWGEEKIKAIYAKFA*
Ga0157379_115796392	3300014968	Switchgrass Rhizosphere	RDYAKGPYPIISEDPKLKPLEQDTEYHFTTGYPGPLTVPADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEDKIKAIYAKSA*
Ga0137409_108015101	3300015245	Vadose Zone Soil	LKNYAKPPLPIISEDPKLKPLEKSPEYHYTMGYPGPCSPAADEVYQQFVMIDATAQFCTDKMDLETTVKWGEDKIRAIYAKFA*
Ga0182006_12367621	3300015261	Rhizosphere	FLKNYAKPPLPVISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWGEEKIKAIYAKFA*
Ga0132256_1023178411	3300015372	Arabidopsis Rhizosphere	LKAFAKPPFPIISDDPKLKPLEQDAEYHFTTGHPGPLTPAADEVYQQFIMVDALAQFCTDKMDLEQTVKWGEEKIKGVHAKFA*
Ga0132256_1038105711	3300015372	Arabidopsis Rhizosphere	NYAKPPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQYCVDKLDLEAAVKWGEEKIKAIHAKFA*
Ga0132257_1007645872	3300015373	Arabidopsis Rhizosphere	GYDTPFLKDFAKGPLPIISEDPKLKPLEKSPEYHYTMGYPGPCTPAADEVYQQFVMVDALAQFCTDKMDLEATIKWGEDRIKAIYAKFS*
Ga0132255_1024716841	3300015374	Arabidopsis Rhizosphere	EQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQYCVDKLDLEGAVKWGEEKIKAIHAKFA*
Ga0132255_1037824482	3300015374	Arabidopsis Rhizosphere	KPPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQYCVDKLDLEAAVKWGEEKIKAIHAKFA*
Ga0132255_1058873731	3300015374	Arabidopsis Rhizosphere	PFPIISEDPKLKPLEQDAEYHFTTGSPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEDKIKAIYAKSA*
Ga0182036_111567692	3300016270	Soil	PKLKPLEKSPEYHFTMGYPGPCSPAADEVYQQFVMIDAVAQFCTDKMDLETTIKWGEDKIKAIYAKFA
Ga0182034_101966592	3300016371	Soil	MPMLHAFATPPFPIISEDPKLKPLEQDAEYHFTIGYPGLFTPAADEVYQQFIMVDALAQFCTDKLDLERAIKWGEEKIKAVHATVAGAGPGSG
Ga0182039_110766041	3300016422	Soil	KPLEKSPEYHFTMGYPGPCSPAADEVYQQFVMIDAVAQFCTDKMDLETTIKWGEDKIKAIYAKFA
Ga0187778_100475481	3300017961	Tropical Peatland	PKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKLDLEQAVKWGDERIKSIYAKFV
Ga0187766_111412111	3300018058	Tropical Peatland	FPIISEDPKLKPLEQDTDYHFTTGYPGPLTISADEVYQQFVMVDALAQFCTDKMDLEQTVKWGDEKIKAIYAKSA
Ga0187773_106599721	3300018064	Tropical Peatland	AKPPLPIISEEPKLKPLEQDADYHFTIGYPGTFTPAADEVYQQFIMVDALAQYCTDKLDLEATVKWAEDKIKAVYAKYV
Ga0187774_101594482	3300018089	Tropical Peatland	FRASTGYDNPFLKDFAKGPLPIISEDPKLKPLEKSPEYHFTMGYPGPCSPAADEVYQQFIMVDALAQFCTDKMDLETTVKWGEDRIRAIYAKFA
Ga0190274_134478181	3300018476	Soil	KTYAKGSLPIISEDPKLKLLEKSPEYHYTIGYPGPLTVPADEVYQQFILIDAVAQFCTDKMDLEQTVKWGEDKLKAIYSKFV
Ga0190273_114560781	3300018920	Soil	KVLEKSPEYHYTIGYPGPLTVPADEVYQQFVLIDAVAQFCTDKMDLEQTVKWGEDKLKAIYAKFV
Ga0184644_13356821	3300019269	Groundwater Sediment	AKPPFPIISDDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCVDKMDLEQAVKWGEEKIKSIYAKFA
Ga0190264_108272481	3300019377	Soil	PLPIISDNPKLKPLEQDAEYHFTVGYPGPLTPAADEVYQQFVMVDALAQFCVDKMDLEQAVKWGEEKIKSVYAKFA
Ga0193734_10917241	3300020015	Soil	KLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQFATDKMDLEQTIKWGEEKIKAIYAKFV
Ga0179596_104040132	3300021086	Vadose Zone Soil	DPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQFATDKMDLEQTVKWGEEKIKAIYAKFV
Ga0210408_106216261	3300021178	Soil	PPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKAIYAKFV
Ga0126371_137409201	3300021560	Tropical Forest Soil	AKPPFPVISDDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKGIHAKFA
Ga0209341_112646302	3300025325	Soil	YNYPFLKTYAKGPLPIISVDPKLKVLEKSPEYHYTIGHPGPLTVPADEVYQQFVLIDAAAQFCTDKMDVEQTVKWGEDKLKAIYSKFV
Ga0207685_106034231	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	LEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQFATDKMDLEQTVKWAEEKIKAIYAKYV
Ga0207646_110270081	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	YAKPPFPIISEDPKLKPLEQGAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQFATDKMDLEQTIKWGEEKIKAIYAKFV
Ga0207700_111479431	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	KNYAKPPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKAIYAKFV
Ga0207701_111413851	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	LKTFAKGPLPVISEDPKLKPLEKSPEYHYTMGYPGPCSAAADEVYQQFIMIDAVAQFCTDKMDLEQTVKWGEDKLKAIYSKFV
Ga0207690_110231021	3300025932	Corn Rhizosphere	LPVISEDPKLKPLEKSPEYHYTMGYPGSCSAAADEVYQQFIMIDAVAQFCTDKMDLEQTVKWGEDKLKAIYSKFV
Ga0207690_112769722	3300025932	Corn Rhizosphere	PFPIISEDPKLKPLEQDAEYHFTTGYPGQLTPAADEVYQQFVLVDALAQFCADKLDLEGAVRWGEEKIKSIYGKFA
Ga0207669_106226422	3300025937	Miscanthus Rhizosphere	NYAKPPFPVISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFILVDALAQYCVDKLDLEAAVKWGEEKIKAIHAKFA
Ga0207658_113574201	3300025986	Switchgrass Rhizosphere	LEQDADYHFTTGYPGPLTAAADEVYQQFVLVDALAQYCVDKLDLEAAVKWGEEKIKAIHAKFA
Ga0207683_113158831	3300026121	Miscanthus Rhizosphere	PIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFILVDALAQYCVDKLDLEAAVKWGEEKIKAIHAKFA
Ga0207698_112485581	3300026142	Corn Rhizosphere	PKLKPLEQDAEYHFTTGYPGTLTPAADEVYQQFVMVDALAQFCADKLDLEGAVRWGEEKIKSIYGKFA
Ga0209438_11504722	3300026285	Grasslands Soil	LKPLEKSPEYHYTMGYPGPCSPAADEVYQQFVMIDATAQFCTDKMDLETTVKWGEDKIRAIYAKFA
Ga0209180_105173561	3300027846	Vadose Zone Soil	PFLKNYAKPPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFIMVDALAQFATDKMDLEQTVKWGEEKIKAIYAKFV
Ga0207428_112219102	3300027907	Populus Rhizosphere	NYSKPPLPIISEDPKLKPLEQDAEYHFTTGFPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWAEDKIKAIYAKFV
Ga0268265_117874552	3300028380	Switchgrass Rhizosphere	FPIISEDPKLKPLEQDADYHFTTGYPGPLTAAADEVYQQFVLIDAAAQFCTDKMDLEQTIKWGEDKLKAIYAKFI
Ga0310888_103438492	3300031538	Soil	IISEDPKLKPLEKSPEYHFTMGYPGPCTPAADEVYQQFIMVDATAQFCTDKMDLETTIKWGEDKIRAIYAKFA
Ga0318538_104395671	3300031546	Soil	GYNMPMLHAFATPPFPIISEDPKLKPLEQDAEYHFTIGYPGLFTPAADEVYQQFIMVDALAQFCTDKLDLERAIKWGEEKIKAVYTTVA
Ga0318496_108187462	3300031713	Soil	DPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKGIHAKFA
Ga0307469_104217361	3300031720	Hardwood Forest Soil	PFLKDFAKGPLPIISEDPKLKPLEKSPEYHFTMGYPGPCSPAADEVYQQFVMIDATAQFCTDKMDLETTIKWGEDRIRAIYAKFA
Ga0307469_115707401	3300031720	Hardwood Forest Soil	NYAKPPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKAIYAKFV
Ga0307468_1007222561	3300031740	Hardwood Forest Soil	PLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWAEEKIKAIYAKFA
Ga0306918_102007641	3300031744	Soil	TPPFPIISEDPKLKPLEQDAEYHFTIGYPGSFTPAAAEVYQQFIMVDALAQFCTDKLDLERAIKWGEEKIKAVYTTVA
Ga0318509_106771322	3300031768	Soil	FATPPFPIISEDPKLKPLEQDAEYHFTIGYPGLFTPAADEVYQQFIMVDALAQFCTDKLDLERAIKWGEEKIKAVYTTVA
Ga0318566_106108012	3300031779	Soil	PFLKAYAKPPFPVISDDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKGIHAKFA
Ga0318550_102247901	3300031797	Soil	PKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKGIHAKFA
Ga0318497_100419133	3300031805	Soil	MPMLHAFATPPFPIISEDPKLKPLEQDAEYHFTIGYPGLFTPAADEVYQQFIMVDALAQFCTDKLDLERAIKWGEEKIKAVYTTVA
Ga0307473_106985291	3300031820	Hardwood Forest Soil	FPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKAIYAKFV
Ga0306919_108353301	3300031879	Soil	AFATPPFPIISEDPKLKPLEQDAEYHFTIGYPGLFTPAADEVNQQFIKVDAHAQFCTDKLDLERAIKWGEEKIKAVYTTVA
Ga0318551_107230981	3300031896	Soil	PLEKSPEYHFTMGYPGPCSPAADEVYQQFVMIDAVAQFCTDKMDLETTIKWGEDKIKAIYAKFA
Ga0307407_100729614	3300031903	Rhizosphere	YAKGPLPIISEDPKLKVLEKSPEYHYTIGFPGSLTVPADEVYQQFVMIDTVAQFCSDRLDLEAAVKWGEEKIKSIYAKFV
Ga0214473_102835242	3300031949	Soil	AKASTDYNMPMLKAFAKQPPLPILSEDPKLKPLEQDADYHFTIGYPGTFTPTADEVYQQFIMVDALAQYCADKLDLEATVKWADEKIKAVYAKFA
Ga0306926_102025233	3300031954	Soil	LKPLEQDADYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKLDLEQAVKWGEEKIKAIHAKFV
Ga0306926_108150502	3300031954	Soil	FKDAFRASTGYDTPFLKEFAKGPLPIISEDPKLKPLEKSPEYHFTMGYPGPCSPAADEVYQQFVMIDAVAQFCTDKMDLETTIKWGEDKIKAIYAKFA
Ga0307416_1014333182	3300032002	Rhizosphere	LEALTDNFTEAFRASTGYDNPFLKKYAEGPLPIISEDPKLKVLEKSPEYHFTIGYPGPLTPAADEVYQQFVMIDTVAQFCSDRLDLEAAMKWGEDKIKSIYAKFA
Ga0310897_102615143	3300032003	Soil	PLPIVSEDPKLKPLEKSPEYHYTMGYPGPCSAAADEVYQQFIMIDAVAQFCTDKMDLEQTVKWGEDKLKAIYSKFV
Ga0307411_109844682	3300032005	Rhizosphere	MPFLKNYAKPPFPIISEDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEEKIKAIYAKFA
Ga0310902_112486521	3300032012	Soil	AFRASTGYDTPFLKDFAKGPLPIISEDPKLKPLEKSPEYHFTMGYPGPCTPAADEVYQQFIMVDATAQFCTDKMDLETTIKWGEDKIRAIYAKFA
Ga0310906_102939293	3300032013	Soil	KGPLPVISEDPKLKPLEKSPEYHYTMGYPGPCSAAADEVYQQFIMIDAVAQFCTDKMDLEQTVKWGEDKLKAIYSKFV
Ga0318549_105475012	3300032041	Soil	LEQDAEYHFTIGYPGLFTPAADEVYQQFIMVDALAQFCTDKLDLERAIKWGEEKIKAVYATVA
Ga0318504_103279351	3300032063	Soil	MPFLKNYAKPPFPIISEDPKLKPLEQDADYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKLDLEQAVKWGEEKIKAIHAKFV
Ga0318524_103214771	3300032067	Soil	NMPFLKNYAKPPFPIISEDPKLKPLEQDADYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCTDKLDLEQAVKWGEEKIKAIHAKFV
Ga0307471_1016434822	3300032180	Hardwood Forest Soil	EQDTEYHFTTGYPGPLTVPADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEERIKAIYAKFV
Ga0335084_101177371	3300033004	Soil	GYDMPFLKDFAKGPFPIISEDPKLKPLEQDADYHFTTGYPGPLTVAADEVYQQFVMVDALAQFCTDKMDLEQTVKWGEDKIKAIYAKSA
Ga0335084_119723751	3300033004	Soil	LEKSPEYHYTMGYPGPCTPAADEVYQQFVLVDALAQFCTDKMDLEQTIKWGDDKLKAIYAKFV
Ga0247830_108133011	3300033551	Soil	FMKALAKPPLPIISDDPKLKPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFCVDKMDLEQAVKWGEEKIKSVYAKFA
Ga0373950_0116110_353_586	3300034818	Rhizosphere Soil	PPFPIISDDPKLKPLEQDAEYHFTTGYPGTLTPAADEVYQQFVMVDALAQFCADKLDLEGAVRWGEEKIKSIYGKFA
Ga0373958_0209982_232_492	3300034819	Rhizosphere Soil	MPFLKAYAKPPFPIISDDPKLKPLEQDAEYHFTTGYPGTLTPAADEVYQQFVMVDALAQFCADKLDLEGAVRWGEEKIKSIYGKFA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F058774

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences