Metagenome Family F058676

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F058676
Family Type	Metagenome
Number of Sequences	134
Average Sequence Length	50 residues
Representative Sequence	VKERIIRMELTDLEKLLREQGTIKKNEYLNDAHIEPGELVIRVLAEDKPKG
Number of Associated Samples	80
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	86.57 %
% of genes near scaffold ends (potentially truncated)	23.88 %
% of genes from short scaffolds (< 2000 bps)	77.61 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.194 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (29.105 % of family members)
Environment Ontology (ENVO)	Unclassified (31.343 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (52.985 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.92% β-sheet: 21.52% Coil/Unstructured: 64.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF02768	DNA_pol3_beta_3	8.21
PF11171	DUF2958	1.49
PF02371	Transposase_20	1.49
PF12728	HTH_17	1.49
PF07508	Recombinase	1.49
PF13408	Zn_ribbon_recom	0.75
PF01037	AsnC_trans_reg	0.75
PF01145	Band_7	0.75
PF13426	PAS_9	0.75
PF08281	Sigma70_r4_2	0.75
PF00145	DNA_methylase	0.75
PF02767	DNA_pol3_beta_2	0.75
PF00589	Phage_integrase	0.75
PF00005	ABC_tran	0.75
PF00528	BPD_transp_1	0.75
PF02535	Zip	0.75
PF07676	PD40	0.75
PF02645	DegV	0.75
PF13683	rve_3	0.75
PF08241	Methyltransf_11	0.75
PF01648	ACPS	0.75
PF07963	N_methyl	0.75
PF01935	DUF87	0.75
PF00717	Peptidase_S24	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	Replication, recombination and repair [L]	8.96
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.49
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.49
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.75
COG0428	Zinc transporter ZupT	Inorganic ion transport and metabolism [P]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.19 %
All Organisms	root	All Organisms	38.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.19 %
cellular organisms	root	All Organisms → cellular organisms	36.57 %
Viruses	superkingdom	All Organisms → Viruses	2.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.19 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.19 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.19 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	27.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.19 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	26.12 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.24 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.19 %
Dehalococcoidales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales	20.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.24 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	1.49 %
Chloroflexi bacterium RBG_16_51_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_51_9	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.19 %
Dehalococcoidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae	20.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.24 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1.49 %
Chloroflexi bacterium RBG_16_51_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_51_9	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.19 %
Dehalococcoides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides	20.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.24 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1.49 %
Chloroflexi bacterium RBG_16_51_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_51_9	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.19 %
Dehalococcoides mccartyi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	20.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.24 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1.49 %
Chloroflexi bacterium RBG_16_51_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_51_9	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002465\|LO132_10294221	Not Available	517	Open in IMG/M
3300003141\|Ga0052246_1000656	Not Available	1989	Open in IMG/M
3300003141\|Ga0052246_1001875	Not Available	1405	Open in IMG/M
3300003144\|Ga0052244_1033220	Not Available	779	Open in IMG/M
3300003852\|Ga0031655_10062843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	1580	Open in IMG/M
3300005235\|Ga0066637_10105275	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300005645\|Ga0077109_1069058	Not Available	1061	Open in IMG/M
3300008516\|Ga0111033_1233750	Not Available	1838	Open in IMG/M
3300008517\|Ga0111034_1012213	All Organisms → cellular organisms → Bacteria	2595	Open in IMG/M
3300009034\|Ga0115863_1469853	Not Available	1445	Open in IMG/M
3300009136\|Ga0118735_10000196	All Organisms → cellular organisms → Bacteria	18608	Open in IMG/M
3300009136\|Ga0118735_10119543	Not Available	828	Open in IMG/M
3300009136\|Ga0118735_10345069	Not Available	520	Open in IMG/M
3300009149\|Ga0114918_10345412	Not Available	822	Open in IMG/M
3300009488\|Ga0114925_10613380	Not Available	771	Open in IMG/M
3300009499\|Ga0114930_10298219	Not Available	774	Open in IMG/M
3300009499\|Ga0114930_10357548	Not Available	685	Open in IMG/M
3300009499\|Ga0114930_10453948	Not Available	585	Open in IMG/M
3300009528\|Ga0114920_10293919	Not Available	1094	Open in IMG/M
3300009529\|Ga0114919_10006208	All Organisms → cellular organisms → Bacteria	9509	Open in IMG/M
3300009529\|Ga0114919_10264813	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300009529\|Ga0114919_10316584	Not Available	1093	Open in IMG/M
3300009529\|Ga0114919_10396798	Not Available	959	Open in IMG/M
3300009529\|Ga0114919_10438876	Not Available	905	Open in IMG/M
3300009529\|Ga0114919_10457812	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300009529\|Ga0114919_10655980	Not Available	716	Open in IMG/M
3300009529\|Ga0114919_10696723	Not Available	692	Open in IMG/M
3300010243\|Ga0136485_1018995	Not Available	529	Open in IMG/M
3300010319\|Ga0136653_10153162	All Organisms → Viruses → Predicted Viral	1080	Open in IMG/M
3300010319\|Ga0136653_10157432	Not Available	1062	Open in IMG/M
3300010328\|Ga0129298_10124672	Not Available	1217	Open in IMG/M
3300012964\|Ga0153916_13150655	Not Available	519	Open in IMG/M
3300013088\|Ga0163200_1022008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	1932	Open in IMG/M
3300013088\|Ga0163200_1106200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	855	Open in IMG/M
3300013090\|Ga0163209_1209288	Not Available	669	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10187813	All Organisms → Viruses → Predicted Viral	1330	Open in IMG/M
(restricted) 3300013130\|Ga0172363_10094955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_51_9	2101	Open in IMG/M
3300014613\|Ga0180008_1042571	Not Available	1827	Open in IMG/M
3300014613\|Ga0180008_1347251	Not Available	561	Open in IMG/M
3300014656\|Ga0180007_10332183	Not Available	935	Open in IMG/M
3300014656\|Ga0180007_10576277	Not Available	673	Open in IMG/M
3300015370\|Ga0180009_10264558	Not Available	735	Open in IMG/M
3300018018\|Ga0187886_1010268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	5803	Open in IMG/M
3300018055\|Ga0184616_10134647	Not Available	905	Open in IMG/M
3300018070\|Ga0184631_10145223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	953	Open in IMG/M
3300018070\|Ga0184631_10401987	Not Available	565	Open in IMG/M
3300022553\|Ga0212124_10499134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	634	Open in IMG/M
3300022556\|Ga0212121_10073244	All Organisms → Viruses → Predicted Viral	2706	Open in IMG/M
3300024262\|Ga0210003_1125075	Not Available	1133	Open in IMG/M
3300024353\|Ga0209979_1221035	Not Available	651	Open in IMG/M
3300024433\|Ga0209986_10015896	All Organisms → cellular organisms → Bacteria	5325	Open in IMG/M
3300024433\|Ga0209986_10364737	Not Available	667	Open in IMG/M
3300025164\|Ga0209521_10273607	Not Available	973	Open in IMG/M
3300025824\|Ga0208325_1034605	Not Available	1148	Open in IMG/M
3300025843\|Ga0209182_10114824	Not Available	757	Open in IMG/M
3300027740\|Ga0214474_1122366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	975	Open in IMG/M
3300027740\|Ga0214474_1342434	Not Available	524	Open in IMG/M
3300027893\|Ga0209636_10340938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1300	Open in IMG/M
3300028169\|Ga0268279_1014561	Not Available	2840	Open in IMG/M
3300028169\|Ga0268279_1201266	Not Available	500	Open in IMG/M
3300028191\|Ga0265595_1144172	Not Available	739	Open in IMG/M
3300028276\|Ga0268282_1064555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	853	Open in IMG/M
3300028299\|Ga0268276_1132790	Not Available	798	Open in IMG/M
3300030613\|Ga0299915_10173850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	1534	Open in IMG/M
3300031257\|Ga0315555_1000749	All Organisms → cellular organisms → Bacteria	23285	Open in IMG/M
3300031257\|Ga0315555_1271502	Not Available	643	Open in IMG/M
3300031275\|Ga0307437_1015662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	3244	Open in IMG/M
3300031275\|Ga0307437_1092874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	915	Open in IMG/M
3300031278\|Ga0307431_1005459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	5641	Open in IMG/M
3300031278\|Ga0307431_1013605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	3072	Open in IMG/M
3300031331\|Ga0307432_1110122	Not Available	746	Open in IMG/M
3300031337\|Ga0307430_1079900	Not Available	970	Open in IMG/M
3300031351\|Ga0307427_1041441	Not Available	1322	Open in IMG/M
3300031365\|Ga0307443_1033223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	1807	Open in IMG/M
3300031369\|Ga0307422_1116394	Not Available	781	Open in IMG/M
3300031379\|Ga0307434_1208751	Not Available	513	Open in IMG/M
3300031539\|Ga0307380_10091990	All Organisms → cellular organisms → Bacteria	3155	Open in IMG/M
3300031539\|Ga0307380_10124249	Not Available	2610	Open in IMG/M
3300031539\|Ga0307380_10549177	Not Available	1005	Open in IMG/M
3300031551\|Ga0315548_1002740	Not Available	13541	Open in IMG/M
3300031551\|Ga0315548_1100260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	1135	Open in IMG/M
3300031553\|Ga0315547_1019534	Not Available	3046	Open in IMG/M
3300031565\|Ga0307379_10165279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	2307	Open in IMG/M
3300031565\|Ga0307379_10446908	Not Available	1225	Open in IMG/M
3300031565\|Ga0307379_10784122	Not Available	842	Open in IMG/M
3300031565\|Ga0307379_10879510	Not Available	778	Open in IMG/M
3300031565\|Ga0307379_10907395	Not Available	762	Open in IMG/M
3300031566\|Ga0307378_10521350	Not Available	1061	Open in IMG/M
3300031566\|Ga0307378_10569205	Not Available	1001	Open in IMG/M
3300031566\|Ga0307378_11369211	Not Available	548	Open in IMG/M
(restricted) 3300031587\|Ga0315308_1000920	Not Available	16837	Open in IMG/M
(restricted) 3300031587\|Ga0315308_1033595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	2415	Open in IMG/M
(restricted) 3300031587\|Ga0315308_1118842	Not Available	1062	Open in IMG/M
(restricted) 3300031587\|Ga0315308_1263880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	607	Open in IMG/M
3300031650\|Ga0315539_1124637	Not Available	851	Open in IMG/M
3300031650\|Ga0315539_1166423	Not Available	676	Open in IMG/M
3300031651\|Ga0315543_1001292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	27575	Open in IMG/M
3300031669\|Ga0307375_10482918	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300031707\|Ga0315291_10283893	Not Available	1633	Open in IMG/M
3300031707\|Ga0315291_11042265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	684	Open in IMG/M
3300031707\|Ga0315291_11269620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	597	Open in IMG/M
3300031746\|Ga0315293_10054829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	3449	Open in IMG/M
3300031746\|Ga0315293_10926536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	627	Open in IMG/M
3300031772\|Ga0315288_10664924	Not Available	990	Open in IMG/M
3300031862\|Ga0315280_10021778	Not Available	6805	Open in IMG/M
3300031862\|Ga0315280_10055717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	3295	Open in IMG/M
3300031862\|Ga0315280_10061343	Not Available	3051	Open in IMG/M
3300031862\|Ga0315280_10109887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1895	Open in IMG/M
3300031864\|Ga0315538_1009817	All Organisms → cellular organisms → Bacteria	4000	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10000186	Not Available	41667	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10234027	Not Available	805	Open in IMG/M
(restricted) 3300031876\|Ga0315310_10377069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	578	Open in IMG/M
(restricted) 3300031877\|Ga0315314_1146343	Not Available	911	Open in IMG/M
3300031952\|Ga0315294_10452033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	1188	Open in IMG/M
3300031999\|Ga0315274_10663984	Not Available	1136	Open in IMG/M
3300031999\|Ga0315274_10698840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1097	Open in IMG/M
3300031999\|Ga0315274_11229349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	739	Open in IMG/M
3300031999\|Ga0315274_12054423	Not Available	511	Open in IMG/M
3300032020\|Ga0315296_10001538	All Organisms → cellular organisms → Bacteria	20122	Open in IMG/M
3300032020\|Ga0315296_10001637	Not Available	19479	Open in IMG/M
3300032020\|Ga0315296_10170912	Not Available	1323	Open in IMG/M
3300032020\|Ga0315296_10509655	Not Available	634	Open in IMG/M
3300032029\|Ga0315546_1020325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	2398	Open in IMG/M
3300032046\|Ga0315289_11230726	Not Available	600	Open in IMG/M
3300032053\|Ga0315284_10101858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	3839	Open in IMG/M
3300032069\|Ga0315282_10216323	Not Available	1367	Open in IMG/M
3300032069\|Ga0315282_10228171	Not Available	1309	Open in IMG/M
3300032070\|Ga0315279_10336408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	1072	Open in IMG/M
3300032070\|Ga0315279_10464942	Not Available	843	Open in IMG/M
3300032070\|Ga0315279_10548497	Not Available	743	Open in IMG/M
3300032118\|Ga0315277_10568752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	1120	Open in IMG/M
3300032118\|Ga0315277_11564037	Not Available	561	Open in IMG/M
3300032401\|Ga0315275_11386216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	759	Open in IMG/M
3300033486\|Ga0316624_11154235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	703	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	87.31%
Terrestrial	Environmental → Terrestrial	12.69%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	44.03%
Marine	Environmental → Aquatic → Marine	33.58%
Soil	Environmental → Terrestrial → Soil	12.69%
Sediment	Environmental → Aquatic → Sediment	5.22%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	4.48%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	36.57%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.67%
Oceanic	Environmental → Aquatic → Marine → Oceanic	14.18%
Clay	Environmental → Terrestrial → Soil → Clay	8.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.22%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	4.48%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	4.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	2.99%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.24%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.49%
Coastal	Environmental → Aquatic → Marine → Coastal	1.49%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.75%
Microbialites	Environmental → Aquatic → Freshwater → Microbialites	0.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.75%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	30.60%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	14.93%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	14.18%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	8.96%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	5.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.22%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	4.48%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	4.48%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.24%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.49%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.49%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.49%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.75%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Freshwater → Microbialites → Unclassified	0.75%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	29.10%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	13.43%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	8.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	7.46%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	7.46%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	4.48%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.73%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	3.73%
Anoxic Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water	2.24%
Marine Sediment	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment	2.24%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.24%
Marine Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment	2.24%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	1.49%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	1.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.49%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.75%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.75%
Freshwater Lake	Environmental → Aquatic → Freshwater → Microbialites → Unclassified → Freshwater Lake	0.75%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.75%
Sediment, Intertidal	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal	0.75%
Brackish Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Brackish Water	0.75%
Marine Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002465	Anoxic frehswater biofilm from Lago dell Orsa, Frasassi caves, Italy	Environmental	Open in IMG/M
3300003141	Marine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf	Environmental	Open in IMG/M
3300003144	Marine sediment microbial communities from deep subseafloor - Sample from 18.6 mbsf	Environmental	Open in IMG/M
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental	Open in IMG/M
3300005235	Groundwater microbial communities from aquifer - Crystal Geyser CG08_land_8/20/14_0.20	Environmental	Open in IMG/M
3300005645	Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m)	Environmental	Open in IMG/M
3300008516	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3	Environmental	Open in IMG/M
3300008517	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4	Environmental	Open in IMG/M
3300009034	Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea	Environmental	Open in IMG/M
3300009136	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsf	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental	Open in IMG/M
3300009499	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG	Environmental	Open in IMG/M
3300009528	Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG	Environmental	Open in IMG/M
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental	Open in IMG/M
3300010243	Marine sediment microbial community from clay-turbidite interface sediment within the South China Sea	Environmental	Open in IMG/M
3300010319	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 275m metaG	Environmental	Open in IMG/M
3300010328	Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I19B2 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013088	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_200m	Environmental	Open in IMG/M
3300013090	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_160m	Environmental	Open in IMG/M
3300013128 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm	Environmental	Open in IMG/M
3300013130 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2	Environmental	Open in IMG/M
3300014613	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG	Environmental	Open in IMG/M
3300014656	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG	Environmental	Open in IMG/M
3300015370	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PC_MetaG	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300022553	Powell_combined assembly	Environmental	Open in IMG/M
3300022556	Kivu_combined assembly	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300024353	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG (SPAdes)	Environmental	Open in IMG/M
3300024433	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025824	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_330m (SPAdes)	Environmental	Open in IMG/M
3300025843	Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes)	Environmental	Open in IMG/M
3300027740	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214 HiSeq	Environmental	Open in IMG/M
3300027893	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes)	Environmental	Open in IMG/M
3300028169	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m	Environmental	Open in IMG/M
3300028191	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_50m	Environmental	Open in IMG/M
3300028276	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_120m	Environmental	Open in IMG/M
3300028299	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m	Environmental	Open in IMG/M
3300030613	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227	Environmental	Open in IMG/M
3300031257	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-80	Environmental	Open in IMG/M
3300031275	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-90	Environmental	Open in IMG/M
3300031278	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-170	Environmental	Open in IMG/M
3300031331	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-150	Environmental	Open in IMG/M
3300031337	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-130	Environmental	Open in IMG/M
3300031351	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-190	Environmental	Open in IMG/M
3300031365	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1601-220	Environmental	Open in IMG/M
3300031369	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-90	Environmental	Open in IMG/M
3300031379	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-220	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031551	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-110	Environmental	Open in IMG/M
3300031553	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-240	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031566	Soil microbial communities from Risofladan, Vaasa, Finland - UN-1	Environmental	Open in IMG/M
3300031587 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP3	Environmental	Open in IMG/M
3300031650	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-150	Environmental	Open in IMG/M
3300031651	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-210	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300031864	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-230	Environmental	Open in IMG/M
3300031876 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP5	Environmental	Open in IMG/M
3300031877 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032020	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18	Environmental	Open in IMG/M
3300032029	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-170	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300032070	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
LO132_102942212	3300002465	Freshwater Lake	VKERIIRMELTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPNG*
Ga0052246_10006561	3300003141	Marine Sediment	VKERIIRMDLTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPSE*
Ga0052246_10018754	3300003141	Marine Sediment	VKERIIRMELTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDK
Ga0052244_10332201	3300003144	Marine Sediment	VKERIIRLELTDLEDILKEKGSIKEEESLNDAHIEPGELVLRVLYEDEKAT*
Ga0031655_100628432	3300003852	Freshwater Lake Sediment	MPRKGGFVKERIIRMELPNLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAED*
Ga0066637_101052751	3300005235	Groundwater	VKERIIRMELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPKG*
Ga0077109_10690583	3300005645	Brackish Water	VKERIIRMELTDLEKILREQGTIKKIECLNDAHIEPGELVIRVLAEDKPKG*
Ga0111033_12337502	3300008516	Marine Sediment	MELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPKG*
Ga0111034_10122133	3300008517	Marine Sediment	MELTDLEKLLREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPKG*
Ga0115863_14698534	3300009034	Sediment, Intertidal	MELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAX
Ga0118735_100001968	3300009136	Marine Sediment	MKERIIRMELTDLEKLLREQGTIKKIEYLNDAHIEPGELVIRVLAEDKPRPS*
Ga0118735_101195433	3300009136	Marine Sediment	MKEIILRIDLPQLEKILKKQGTIKKNESLNDAHIEPNELVIRVLAEDKD*
Ga0118735_103450692	3300009136	Marine Sediment	MELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLTEDKPKG*
Ga0114918_103454121	3300009149	Deep Subsurface	MALTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPRG*
Ga0114925_106133802	3300009488	Deep Subsurface	MKLTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPKG*
Ga0114930_102982192	3300009499	Deep Subsurface	IRMNLTDLEKLLKEQDSIKKDEFLNDAHIEPNELVLRVLYEDKKS*
Ga0114930_103575481	3300009499	Deep Subsurface	EGGIVKERIIRMGLTDLEKLLREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPKG*
Ga0114930_104539482	3300009499	Deep Subsurface	MKERIIRMELTDLEKILREQGTIKKIECLNDAHIEPGELVIRVLAEDKPKG*
Ga0114920_102939193	3300009528	Deep Subsurface	VKERIIRMGLTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPRPS*
Ga0114919_100062081	3300009529	Deep Subsurface	ELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPRPS*
Ga0114919_102648132	3300009529	Deep Subsurface	VKERIIRMELTDLEKILREQGTIKKIECLNDAHIEPGELVIRVLAEDKPSE*
Ga0114919_103165842	3300009529	Deep Subsurface	VKEIIIRIDLPQLEKILKKQGTIKKNEYLNDAHIEPNELVIRVLAENKDGR*
Ga0114919_103967981	3300009529	Deep Subsurface	ELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPKG*
Ga0114919_104388762	3300009529	Deep Subsurface	MELTDLEKILREQGTIKKIECLNDAHIEPGELVIRVLAEDKPKG*
Ga0114919_104578121	3300009529	Deep Subsurface	VKERIIRMGLTDLEKLLREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPSE*
Ga0114919_106559801	3300009529	Deep Subsurface	MGLTDLEKLLREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPKG*
Ga0114919_106967232	3300009529	Deep Subsurface	MELTDLEKILWEQGTIKKNEHLNDAHIEPGELVITVLAEDKPSE*
Ga0136485_10189952	3300010243	Marine Sediment	VKERIIRMELTDLEKILREQGTIKKNEHLNDAHIEPSELVIRVLAEDKPSE*
Ga0136653_101531622	3300010319	Anoxic Lake Water	MKERIIRMELTDLEKILKKQGTIKANEYLNDAHIEPNELVIRVLAEDKQNN*
Ga0136653_101574322	3300010319	Anoxic Lake Water	MELTDLEKLLRKQGTIKKNEHLNDAHIEPGELVIRVLAEDKPKG*
Ga0129298_101246723	3300010328	Lake Sediment	MDLRDLEKILRKAGTIKANEHLNDTHIEPGELVIRVLAEDSQNERR*
Ga0153916_131506552	3300012964	Freshwater Wetlands	MKERIIRMDLPDLEKLLRKQGTIKKNEYLNDPHIEPNELVIRVLAEDRKKGG*
Ga0163200_10220083	3300013088	Freshwater	VKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDRKKGG*
Ga0163200_11062002	3300013088	Freshwater	VKERIIRMELPNLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDEKRGGN*
Ga0163209_12092882	3300013090	Freshwater	ELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDRKKGG*
(restricted) Ga0172366_101878134	3300013128	Sediment	MELTDLEKILKKQGTIKANEYLNDAHIEPNELVIRVLAEDKQNN*
(restricted) Ga0172363_100949551	3300013130	Sediment	KGGIVKERIIRMELTDLEKLLRKQGTIKKNEHLNDAHIEPGELVIRVLAEDKPKG*
Ga0180008_10425714	3300014613	Groundwater	VKERIIRMGLTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPKG*
Ga0180008_13472511	3300014613	Groundwater	MELTDLEKILREQGTIEKNEHLNDAHIEPGELVIRVLVEDKPKG*
Ga0180007_103321832	3300014656	Groundwater	MELTDLEKLLRKQGTIKKNECLNDAHIEPGELVIRVLAEDKPKG*
Ga0180007_105762772	3300014656	Groundwater	MALTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPK*
Ga0180009_102645581	3300015370	Groundwater	ERIIRMELTDLERILKKQGTIKKGECLNDAHIEPGELVIRVLSEEENVL*
Ga0187886_10102685	3300018018	Peatland	VKERIIRMELPDLEKVLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDRKKGG
Ga0184616_101346471	3300018055	Groundwater Sediment	VKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDEKRGGN
Ga0184631_101452232	3300018070	Groundwater Sediment	VKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVLRVLAED
Ga0184631_104019872	3300018070	Groundwater Sediment	VKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDRKKGG
Ga0212124_104991342	3300022553	Freshwater	VKDRIIRMELPDLEQLLRKQGTIKENEYLNDAHIEPNELVIRVLVEDEKKGG
Ga0212121_100732442	3300022556	Anoxic Lake Water	MKERIIRMELTDLEKILKKQGTIKANEYLNDAHIEPNELVIRVLAEDKQNN
Ga0210003_11250752	3300024262	Deep Subsurface	VKERIIRMALTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPRG
Ga0209979_12210351	3300024353	Deep Subsurface	EGGIVKERIIRMGLTDLEKLLREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPKG
Ga0209986_100158967	3300024433	Deep Subsurface	VKERIIRMELTDLEKILREQGTIKKIECLNDAHIEPGELVIRVLAEDKPSE
Ga0209986_103647371	3300024433	Deep Subsurface	VKEIIIRIDLPQLEKILKKQGTIKKNEYLNDAHIEPNELVIRVLAENKDGR
Ga0209521_102736073	3300025164	Soil	VKERIIRMELPDLEKLLRQQGTIKKNEYLNDAHIEPNELVIRVLVEDEKKGG
Ga0208325_10346053	3300025824	Freshwater	VKEIIIRMELPNLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLVED
Ga0209182_101148242	3300025843	Lake Sediment	RMELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPKG
Ga0214474_11223662	3300027740	Soil	VKERIIRMELPDLEKLLRKQGTIKKNEYLNDAHIEPNELVIRVLAEDRKKGG
Ga0214474_13424342	3300027740	Soil	KGGFVKERIIRMELTDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDEKKGG
Ga0209636_103409383	3300027893	Marine Sediment	VKERIIRMELPDLEKLLRKQNTIKKNEYLNDAHIEPNELVIRVLVEDGKKGG
Ga0268279_10145611	3300028169	Saline Water	IIRMELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPKG
Ga0268279_12012662	3300028169	Saline Water	MKERIIRMELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPSE
Ga0265595_11441722	3300028191	Saline Water	VKERIIRMELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDK
Ga0268282_10645551	3300028276	Saline Water	VKERIIRMELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPRLS
Ga0268276_11327902	3300028299	Saline Water	MKERIIRMELTDLEKLLRKQGTIKKNECLNDAHIEPGELVIRVLAEDKPKG
Ga0299915_101738502	3300030613	Soil	VKERIIRMELTDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDEKKGG
Ga0315555_100074926	3300031257	Salt Marsh Sediment	VKQRGMKERIIRMDLTDLEKILKKQDTIKRDEFLNDAHIEPNELVIRVLSEDKKS
Ga0315555_12715022	3300031257	Salt Marsh Sediment	VKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLVEDEKKGG
Ga0307437_10156622	3300031275	Salt Marsh	VKERIIRMELPNLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLVED
Ga0307437_10928742	3300031275	Salt Marsh	VKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELLIRVLAEDRKKGG
Ga0307431_10054597	3300031278	Salt Marsh	VKDRIIRMELPDLEKLLKKQGTIKKNEYLNGAHIEPNELVIRVLAEDKKKGV
Ga0307431_10136052	3300031278	Salt Marsh	VKDRVIRMEIPDLEKLLRKQGTIKENEYLNDAHIEPNELVIRVLVEDKKKGG
Ga0307432_11101222	3300031331	Salt Marsh	VKDRIIRMELPDLEKLLKKQGTIKKNEYLNGAHIEPNELVIRVLAED
Ga0307430_10799002	3300031337	Salt Marsh	VKDRIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLVED
Ga0307427_10414411	3300031351	Salt Marsh	VKERIIRMELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPRPS
Ga0307443_10332232	3300031365	Salt Marsh	VKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAKDRKKGG
Ga0307422_11163941	3300031369	Salt Marsh	KERIIRMKLPDLEKLLREQGTIKKNEYLNDAHIEPNELVIRVLVED
Ga0307434_12087512	3300031379	Salt Marsh	MELPNLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLVED
Ga0307380_100919903	3300031539	Soil	VKERIIRMALTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPGE
Ga0307380_101242493	3300031539	Soil	VKERIIRMELTDLEKILREQGTIKRNEYLNDAHIEPGELVIRVLAEDKPKG
Ga0307380_105491772	3300031539	Soil	MKERIIRMELTDLEKLLRKQGTIKKNECLNDAHIEPGELVIRVLAEDKPRLS
Ga0315548_10027404	3300031551	Salt Marsh Sediment	MKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDD
Ga0315548_11002601	3300031551	Salt Marsh Sediment	MKERIIRMELTDLEGILKKQGTIKEDECLNDAHIEPGELVIRVLTDDD
Ga0315547_10195342	3300031553	Salt Marsh Sediment	VKERIIRMELPNLERLLRKQGTIKKNEYLNDAHIEPNELVIRVLVED
Ga0307379_101652793	3300031565	Soil	VKERIIRMELPNLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDEKRGGN
Ga0307379_104469083	3300031565	Soil	VKERIIRMDLTDLEKILREQGKIKKNEHLNDAHIEPGELVIRVLAEDKPGE
Ga0307379_107841222	3300031565	Soil	VKERIIRMELTDLEKLLREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPSE
Ga0307379_108795101	3300031565	Soil	MKERIIRMELTDLEKLLRKQGTIKKNECLNDAHIEPGELVIRVLAEDKPRL
Ga0307379_109073951	3300031565	Soil	VKERIIRMELTDLEKLLWEQGTIKKNECLNDAHIEPGELVIRVLAENKPRG
Ga0307378_105213502	3300031566	Soil	GIVKERIIRMELTDLEKILREQGTIKKNECLNDAHIEPGELVIRVLAENKPRG
Ga0307378_105692053	3300031566	Soil	TDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPGE
Ga0307378_113692111	3300031566	Soil	MKERIIRMDLTDLEKILKEQGSIKKDEFLNDAHIEPNELVIRVLSEDKKS
(restricted) Ga0315308_10009203	3300031587	Sediment	VKERIIRMELGDLEKLLREQGTLKKNEYLNDAHIEPNELVLRVLVDDKAKG
(restricted) Ga0315308_10335953	3300031587	Sediment	VKERTIRMELGDLEKLLREQGTIKKNEYLNDAHIEPNELVLRVLVDDKAKG
(restricted) Ga0315308_11188424	3300031587	Sediment	VKERIIRMELGDLEKLLREQGKIKKNEYLNDAHIEPGELVLRVLVDDKAKG
(restricted) Ga0315308_12638802	3300031587	Sediment	MDLRDLEKILRKVGTIKANEYLNDAHIEPGELVIRVLAEDSQSERR
Ga0315539_11246373	3300031650	Salt Marsh Sediment	GGIVKERIIRMELTDLEKLLREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPKG
Ga0315539_11664232	3300031650	Salt Marsh Sediment	MKERIIRMELTDLEGILKKQGTIKEDECLNDAHIEPGELVI
Ga0315543_100129225	3300031651	Salt Marsh Sediment	VKERIIRMELPNLEKLLKKQGKIKKNEYLNDAHIEPNELVIRVLAEDEKRGGN
Ga0307375_104829182	3300031669	Soil	VKERIIRMELTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDKPRG
Ga0315291_102838932	3300031707	Sediment	VKERIIRMELTDLENLLQEQGTIKKNEHLNDAHIEPGELVIRVLAEDKPKG
Ga0315291_110422652	3300031707	Sediment	VKERIIRMELPDLEKLLRKQGMIKKNEYLNDAHIEPNELVIRVLAEDRKKGG
Ga0315291_112696202	3300031707	Sediment	VKDRIIRMELPDLEKLLRKQGTIKENEYLNDAHIEPNELVIRVLVEDEKKGG
Ga0315293_100548295	3300031746	Sediment	VKERIIRMGLPDLEKLLRKQGTIKKKEYLNDAHIEPNELVIRVLAEDKKKGGN
Ga0315293_109265362	3300031746	Sediment	VKERIIRMELPVLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLVEDEKKGG
Ga0315288_106649241	3300031772	Sediment	VKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDEKKGG
Ga0315280_100217789	3300031862	Sediment	MGPKERIIRLELDNLETLLKAQHIIKKAESLNDVHIEPGELVIRVLAEEKQG
Ga0315280_100557175	3300031862	Sediment	VKERIIRMELPNLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLVEDEKKGG
Ga0315280_100613435	3300031862	Sediment	MKERIIRMDLTDLEKILKKQGSIKKDEFLNDAHIEPNELVIRVLSEDKKNS
Ga0315280_101098871	3300031862	Sediment	MKERIIRMELLDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAED
Ga0315538_10098172	3300031864	Salt Marsh Sediment	MKERIIRMDLTDLEKILKKQDTIKRDEFLNDAHIEPNELVIRVLSEDKKS
(restricted) Ga0315310_1000018648	3300031876	Sediment	VKERIIRMELLDLEKLLKEQGTIKKNEYLNDAHIEPNELVIRVLVED
(restricted) Ga0315310_102340272	3300031876	Sediment	MKERIIRMELTDLEKILKEQGTIKDEEFLNDAHIEPNELVIRVLAEDKNKERG
(restricted) Ga0315310_103770692	3300031876	Sediment	VKERIIRMDLRDLEKILRKAGTIKANEYLNDAHIEPGELVIRVLAEDSQNEKR
(restricted) Ga0315314_11463433	3300031877	Sediment	VKERIIRMELGDLEKLLRKQGEIKKNEYLSDAHIEPGELVLRVLVDDKVKG
Ga0315294_104520333	3300031952	Sediment	VKERIIRIELPDLEELLRKQGTIKKNEYLNDAHIEPNELVIRVLAEDEK
Ga0315274_106639842	3300031999	Sediment	MGMKERIIRMDLTDLEKILKEQGSIKKDEFLNDAHIEPGELVLRVLAEDKKSI
Ga0315274_106988402	3300031999	Sediment	MLKKEELSVKERIIRMELTHLEKILREQGTIKANEYLNDAHIEPNELVIRVLAEDKQNER
Ga0315274_112293492	3300031999	Sediment	VKERIIRMELPDLEKLLRKQGTIKKNEYLNDAHIEPNELVIRVLVED
Ga0315274_120544232	3300031999	Sediment	MKERRIRMDLTDLEKILKKQGSIKKDEFLNDAHIEPNELVIRVLSEDKKSS
Ga0315296_1000153813	3300032020	Sediment	MKERIIRMDLTDLEKILKEQGTIKEEEFLNDAHIEPGELVLRVLAEDKETDFKERR
Ga0315296_1000163721	3300032020	Sediment	MGMKERIIRIDLTDLEKILKEQGTIKKDEFLNDAHIEPNELVIRVLSEDK
Ga0315296_101709122	3300032020	Sediment	VKERIIRMELTDLEKLLREQGTIKKNEYLNDAHIEPGELVIRVLAEDKPKG
Ga0315296_105096551	3300032020	Sediment	KGGFVKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDRKKGG
Ga0315546_10203252	3300032029	Salt Marsh Sediment	VKERIIRMELPDLEKLLREQGTIKKNEYLNDAHIEPNELVIRVLVEDEKKGG
Ga0315289_112307261	3300032046	Sediment	RIIRMELPDLEKLLRKQGTIKKNEYLNDAHIEPNELVIRVLVEDEKKGG
Ga0315284_101018582	3300032053	Sediment	VKDRIIRIELPDLEKLLRKQGTIKKNEHLNDAHIEPNELVIRVLVED
Ga0315282_102163232	3300032069	Sediment	MKERIIRMDLTDLETILKEQGSIKKDEFLNDAHIEPNELVIRVLSEDKESS
Ga0315282_102281712	3300032069	Sediment	MNERTIRLDLNELENILKRAGTLKADDHLNDAHIEPNELVLRVLSEDVPSLNIENK
Ga0315279_103364082	3300032070	Sediment	VKERIIRMELPDLEKLLRKQGTIKKKEYLNDAHIEPNELVIRVLVEDEKKGG
Ga0315279_104649421	3300032070	Sediment	VKERIIRMELTDLEKLLREQGTIKKNECLNDAHIEPGELVIRVLAEDKPEG
Ga0315279_105484971	3300032070	Sediment	VKERIIRMELPDLEKLLRKQGTIKKNEYLNDAHIEPNELVIRVLAED
Ga0315277_105687522	3300032118	Sediment	VKERIIRMELPDLEKLLRKQGTIKKNEYLNDAHIEPNELVIRLLAEDKKKGDKN
Ga0315277_115640371	3300032118	Sediment	VKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVIRVLAEDKKKGG
Ga0315275_113862162	3300032401	Sediment	MKERIIRMELPDLEKLLRKQGTIKKNEYLNDAHIEPNELVIRVLAEDEKRGGN
Ga0316624_111542351	3300033486	Soil	VKERIIRMELPDLEKLLKKQGTIKKNEYLNDAHIEPNELVLRVLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters