Metagenome / Metatranscriptome Family F058465

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F058465
Family Type	Metagenome / Metatranscriptome
Number of Sequences	135
Average Sequence Length	75 residues
Representative Sequence	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Number of Associated Samples	112
Number of Associated Scaffolds	135

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	54.07 %
% of genes near scaffold ends (potentially truncated)	48.89 %
% of genes from short scaffolds (< 2000 bps)	92.59 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.333 % of family members)
Environment Ontology (ENVO)	Unclassified (45.926 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (70.370 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.20% β-sheet: 0.00% Coil/Unstructured: 33.80%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 135 Family Scaffolds
PF00171	Aldedh	45.93
PF13440	Polysacc_synt_3	13.33
PF01943	Polysacc_synt	2.22
PF12852	Cupin_6	0.74
PF13466	STAS_2	0.74
PF00067	p450	0.74
PF12411	Choline_sulf_C	0.74

COG ID	Name	Functional Category	% Frequency in 135 Family Scaffolds
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	45.93
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	45.93
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	45.93
COG2124	Cytochrome P450	Defense mechanisms [V]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	64.44 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	60.74 %
Unclassified	root	N/A	33.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.48 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.74 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	60.74 %
Unclassified	root	N/A	33.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.48 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.74 %

Name	Rank	Taxonomy	Distribution
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	42.22 %
Unclassified	root	N/A	33.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.48 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.74 %
Actinomycetospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.48 %
Mycobacterium tuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex	0.74 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.74 %
Actinomycetospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.48 %
Pseudonocardia sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp.	0.74 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.74 %
Actinomycetospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001977\|JGI24746J21847_1070932	Not Available	507	Open in IMG/M
3300002568\|C688J35102_119269950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	665	Open in IMG/M
3300004463\|Ga0063356_103913904	Not Available	641	Open in IMG/M
3300005093\|Ga0062594_101087338	Not Available	780	Open in IMG/M
3300005327\|Ga0070658_10745302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	851	Open in IMG/M
3300005328\|Ga0070676_10580948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	806	Open in IMG/M
3300005329\|Ga0070683_102263095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	521	Open in IMG/M
3300005330\|Ga0070690_101601047	Not Available	528	Open in IMG/M
3300005337\|Ga0070682_100022991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3699	Open in IMG/M
3300005338\|Ga0068868_100390902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1198	Open in IMG/M
3300005338\|Ga0068868_102407969	Not Available	503	Open in IMG/M
3300005344\|Ga0070661_100087417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2305	Open in IMG/M
3300005344\|Ga0070661_101061766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	674	Open in IMG/M
3300005355\|Ga0070671_100203535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1679	Open in IMG/M
3300005356\|Ga0070674_101631487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	582	Open in IMG/M
3300005364\|Ga0070673_101758561	Not Available	587	Open in IMG/M
3300005367\|Ga0070667_101175659	Not Available	718	Open in IMG/M
3300005435\|Ga0070714_100515447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1142	Open in IMG/M
3300005435\|Ga0070714_100721068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	963	Open in IMG/M
3300005435\|Ga0070714_102202724	Not Available	537	Open in IMG/M
3300005436\|Ga0070713_102411554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	509	Open in IMG/M
3300005437\|Ga0070710_10777800	Not Available	682	Open in IMG/M
3300005438\|Ga0070701_10245929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1078	Open in IMG/M
3300005456\|Ga0070678_102399396	Not Available	501	Open in IMG/M
3300005466\|Ga0070685_10761244	Not Available	711	Open in IMG/M
3300005564\|Ga0070664_100149474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2061	Open in IMG/M
3300005578\|Ga0068854_101031535	Not Available	730	Open in IMG/M
3300005614\|Ga0068856_100149948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2340	Open in IMG/M
3300005617\|Ga0068859_103089199	Not Available	508	Open in IMG/M
3300005842\|Ga0068858_100189845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp.	1941	Open in IMG/M
3300006028\|Ga0070717_10576601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1020	Open in IMG/M
3300006046\|Ga0066652_101238641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	706	Open in IMG/M
3300006163\|Ga0070715_10968567	Not Available	528	Open in IMG/M
3300006175\|Ga0070712_101440567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	601	Open in IMG/M
3300006572\|Ga0074051_11114022	Not Available	687	Open in IMG/M
3300006575\|Ga0074053_10019631	Not Available	514	Open in IMG/M
3300006755\|Ga0079222_10080367	Not Available	1641	Open in IMG/M
3300006755\|Ga0079222_10125088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1409	Open in IMG/M
3300006804\|Ga0079221_10272422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	976	Open in IMG/M
3300006844\|Ga0075428_101437930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	723	Open in IMG/M
3300006880\|Ga0075429_101910118	Not Available	514	Open in IMG/M
3300006914\|Ga0075436_101079165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	604	Open in IMG/M
3300009011\|Ga0105251_10069031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1648	Open in IMG/M
3300009093\|Ga0105240_10458428	Not Available	1425	Open in IMG/M
3300009094\|Ga0111539_10216190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2233	Open in IMG/M
3300009156\|Ga0111538_10056416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5019	Open in IMG/M
3300009156\|Ga0111538_11743356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	784	Open in IMG/M
3300009174\|Ga0105241_10421623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1175	Open in IMG/M
3300009176\|Ga0105242_11908313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	634	Open in IMG/M
3300010154\|Ga0127503_10122190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	881	Open in IMG/M
3300010154\|Ga0127503_10517343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1212	Open in IMG/M
3300010371\|Ga0134125_10521755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1315	Open in IMG/M
3300010371\|Ga0134125_11019773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	907	Open in IMG/M
3300010396\|Ga0134126_10233419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora	2184	Open in IMG/M
3300010401\|Ga0134121_11448532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	700	Open in IMG/M
3300010401\|Ga0134121_13095860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	513	Open in IMG/M
3300010403\|Ga0134123_10255057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1529	Open in IMG/M
3300011119\|Ga0105246_12147460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	542	Open in IMG/M
3300012212\|Ga0150985_104757188	Not Available	613	Open in IMG/M
3300012212\|Ga0150985_107353417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1819	Open in IMG/M
3300012212\|Ga0150985_112456441	Not Available	994	Open in IMG/M
3300012469\|Ga0150984_103817152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1170	Open in IMG/M
3300012469\|Ga0150984_105271890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1860	Open in IMG/M
3300012469\|Ga0150984_119549649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	770	Open in IMG/M
3300012899\|Ga0157299_10050941	Not Available	928	Open in IMG/M
3300012951\|Ga0164300_11177530	Not Available	506	Open in IMG/M
3300012958\|Ga0164299_11119785	Not Available	590	Open in IMG/M
3300012960\|Ga0164301_10609579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	807	Open in IMG/M
3300012961\|Ga0164302_10566692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	816	Open in IMG/M
3300012985\|Ga0164308_10536525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	985	Open in IMG/M
3300012987\|Ga0164307_10093551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1861	Open in IMG/M
3300013102\|Ga0157371_10532007	Not Available	870	Open in IMG/M
3300013102\|Ga0157371_10591033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	825	Open in IMG/M
3300013104\|Ga0157370_10354449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1352	Open in IMG/M
3300013297\|Ga0157378_11421992	Not Available	737	Open in IMG/M
3300013307\|Ga0157372_12637971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	577	Open in IMG/M
3300013308\|Ga0157375_10587136	Not Available	1274	Open in IMG/M
3300013308\|Ga0157375_11838362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	718	Open in IMG/M
3300015371\|Ga0132258_10108191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	6573	Open in IMG/M
3300015371\|Ga0132258_13227599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1124	Open in IMG/M
3300015373\|Ga0132257_103674045	Not Available	558	Open in IMG/M
3300017792\|Ga0163161_10290022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1286	Open in IMG/M
3300017965\|Ga0190266_10150171	Not Available	1046	Open in IMG/M
3300018431\|Ga0066655_10139588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1422	Open in IMG/M
3300018476\|Ga0190274_10015216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	4896	Open in IMG/M
3300019767\|Ga0190267_10091006	Not Available	1183	Open in IMG/M
3300020069\|Ga0197907_10184166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	661	Open in IMG/M
3300020069\|Ga0197907_10373684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1901	Open in IMG/M
3300020070\|Ga0206356_11580679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	511	Open in IMG/M
3300020070\|Ga0206356_11668986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	542	Open in IMG/M
3300020078\|Ga0206352_10163293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	554	Open in IMG/M
3300020080\|Ga0206350_10452755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	548	Open in IMG/M
3300020080\|Ga0206350_11516933	Not Available	864	Open in IMG/M
3300020081\|Ga0206354_10799539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1091	Open in IMG/M
3300020081\|Ga0206354_11406052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	532	Open in IMG/M
3300020082\|Ga0206353_10313417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	838	Open in IMG/M
3300021384\|Ga0213876_10155303	Not Available	1217	Open in IMG/M
3300021951\|Ga0222624_1268083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1010	Open in IMG/M
3300022467\|Ga0224712_10475527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	602	Open in IMG/M
3300022467\|Ga0224712_10670632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	509	Open in IMG/M
3300022756\|Ga0222622_11354006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	524	Open in IMG/M
3300025321\|Ga0207656_10274946	Not Available	829	Open in IMG/M
3300025908\|Ga0207643_10282782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1029	Open in IMG/M
3300025908\|Ga0207643_10447471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	822	Open in IMG/M
3300025909\|Ga0207705_10189878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1553	Open in IMG/M
3300025911\|Ga0207654_10946580	Not Available	625	Open in IMG/M
3300025916\|Ga0207663_10935117	Not Available	694	Open in IMG/M
3300025926\|Ga0207659_11711893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	535	Open in IMG/M
3300025928\|Ga0207700_11018102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	741	Open in IMG/M
3300025935\|Ga0207709_11106382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	651	Open in IMG/M
3300025937\|Ga0207669_10918412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	732	Open in IMG/M
3300025944\|Ga0207661_10615630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	997	Open in IMG/M
3300025944\|Ga0207661_10839454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	846	Open in IMG/M
3300025949\|Ga0207667_11258536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	718	Open in IMG/M
3300025972\|Ga0207668_11307230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	653	Open in IMG/M
3300026023\|Ga0207677_12092482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	526	Open in IMG/M
3300026041\|Ga0207639_11037014	Not Available	768	Open in IMG/M
3300026067\|Ga0207678_11719285	Not Available	551	Open in IMG/M
3300026075\|Ga0207708_10228159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1494	Open in IMG/M
3300026088\|Ga0207641_11396951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	701	Open in IMG/M
3300026089\|Ga0207648_11421619	Not Available	652	Open in IMG/M
3300026121\|Ga0207683_11090178	Not Available	741	Open in IMG/M
3300027725\|Ga0209178_1415691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	513	Open in IMG/M
3300028589\|Ga0247818_10736478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	685	Open in IMG/M
3300028596\|Ga0247821_10786226	Not Available	627	Open in IMG/M
3300028705\|Ga0307276_10013266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1510	Open in IMG/M
3300028717\|Ga0307298_10125181	Not Available	739	Open in IMG/M
3300028778\|Ga0307288_10015149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2417	Open in IMG/M
3300028880\|Ga0307300_10295803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	547	Open in IMG/M
3300030336\|Ga0247826_10376566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1042	Open in IMG/M
3300030902\|Ga0308202_1052307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	752	Open in IMG/M
3300031058\|Ga0308189_10437254	Not Available	550	Open in IMG/M
3300031093\|Ga0308197_10215320	Not Available	662	Open in IMG/M
3300031114\|Ga0308187_10323324	Not Available	586	Open in IMG/M
3300034817\|Ga0373948_0161234	Not Available	566	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.59%
Host-Associated	Host-Associated	47.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.63%
Plants	Host-Associated → Plants	47.41%
Aquatic	Environmental → Aquatic	2.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.52%
Freshwater	Environmental → Aquatic → Freshwater	2.22%
Sediment	Environmental → Aquatic → Sediment	0.74%
Roots	Host-Associated → Plants → Roots	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.81%
Loam	Environmental → Terrestrial → Soil → Loam	14.07%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.44%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.48%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.74%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.44%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.22%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.74%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	8.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.44%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.22%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.22%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.22%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.22%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.22%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.22%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.22%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.96%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.48%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.48%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.74%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.74%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.74%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001977	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24746J21847_10709322	3300001977	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDAL
C688J35102_1192699502	3300002568	Soil	MTSTTDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0063356_1039139041	3300004463	Arabidopsis Thaliana Rhizosphere	MTSTSDDNTFAEIVGTDVETSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLR
Ga0062594_1010873382	3300005093	Soil	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDAMV*
Ga0070658_107453021	3300005327	Corn Rhizosphere	MTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0070676_105809482	3300005328	Miscanthus Rhizosphere	NGRFPAGRGGKPLFMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0070683_1022630952	3300005329	Corn Rhizosphere	IAPNGRFPAGRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0070690_1016010471	3300005330	Switchgrass Rhizosphere	MTSTSDDNTFAEIVGADVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0070682_1000229911	3300005337	Corn Rhizosphere	TFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0068868_1003909022	3300005338	Miscanthus Rhizosphere	VDCGKLIIHIAPNGRFSDAGAGKLQSMTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0068868_1024079692	3300005338	Miscanthus Rhizosphere	MTSTSDDSRFAEIVGAQTDSGDRLAAIDDQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTGASV*
Ga0070661_1000874172	3300005344	Corn Rhizosphere	MTSTSDDSTFAEIVGTEVDTSDRLEAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0070661_1010617662	3300005344	Corn Rhizosphere	TFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0070671_1002035352	3300005355	Switchgrass Rhizosphere	MTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYQADIDALLDLRLWLTELAV*
Ga0070674_1016314871	3300005356	Miscanthus Rhizosphere	HFLMTSTSDDSRFAEIVGAQTDSGDRLAAIDDQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTGASV*
Ga0070673_1017585612	3300005364	Switchgrass Rhizosphere	MTSTSDDSTFAEIVGTEVDTSDRLEAIDHQIATLSARVKATSPRFAALVPHYQADIDALL
Ga0070667_1011756591	3300005367	Switchgrass Rhizosphere	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLR
Ga0070714_1005154472	3300005435	Agricultural Soil	MTSTSEDSRFAEIVGADTENSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTDAAV*
Ga0070714_1007210682	3300005435	Agricultural Soil	MTSTSNDSRFAEIVGAQTDTDDRLAAIDHQIATLNARAKATSPRFAALVPHYRADIDALLDLRLWLTGASV*
Ga0070714_1022027241	3300005435	Agricultural Soil	MTSTSDDNTFAEIVGTDVETSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0070713_1024115542	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	PVFRRWGGELHCMTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0070710_107778001	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTSDDNTFAEIIGTDVETSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0070701_102459292	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0070678_1023993961	3300005456	Miscanthus Rhizosphere	MTSTSEDSRFAEIVGADTENSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTEAAI*
Ga0070685_107612442	3300005466	Switchgrass Rhizosphere	MTSTSDDSRFAEIVGAQTDSGDRLAAIDDPISTLNARVKATSPRFAALVPHYRADIDALLDLRLWLTGASV*
Ga0070664_1001494743	3300005564	Corn Rhizosphere	MTSTSDDNTFAEIVGADVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDA
Ga0068854_1010315352	3300005578	Corn Rhizosphere	MTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLR
Ga0068856_1001499482	3300005614	Corn Rhizosphere	MTSTSDDNTFAEIVGTDVTTGDRLAAIDHQIATLNARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0068859_1030891991	3300005617	Switchgrass Rhizosphere	ETDHPHCSEWPVFRRWGRELKSMTSTSDDNTFAEIVGADVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0068858_1001898451	3300005842	Switchgrass Rhizosphere	SMTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0070717_105766012	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTSDDSRFAEIIGAQTDSGDRLAAIDDQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTDAAV*
Ga0066652_1012386411	3300006046	Soil	TDHPHCSEWPVFRRRGRELQSMTSTSDDNTFAEIIGTDVETSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTGASV*
Ga0070715_109685672	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARAKATSPRFAALVPHYRADIDALLDLRL
Ga0070712_1014405672	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTSDDNTFAEIIGTDVETSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTEAAI*
Ga0074051_111140222	3300006572	Soil	MTRTSDAESFAQIVGADPSGRDSLVAIDQQIAALHERAKATSPRYAALIPHYWADI
Ga0074053_100196312	3300006575	Soil	MTSTSEDSRFAEIVGANTDADDRLAAIDHQIATLNARAKATSPRFAALVPHYRADIDALLDLRLWLTGSI*
Ga0079222_100803672	3300006755	Agricultural Soil	MTSTSDDSTFADIVGAEVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYQADIDALLDLRLWLTDAAV*
Ga0079222_101250882	3300006755	Agricultural Soil	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVRATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0079221_102724222	3300006804	Agricultural Soil	MTSTSDDSTFADIVGAEVDTSDRLAAIDHQIATLSARVRATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0075428_1014379301	3300006844	Populus Rhizosphere	DDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0075429_1019101182	3300006880	Populus Rhizosphere	RFPAGRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0075436_1010791651	3300006914	Populus Rhizosphere	RRCGLRETDHPHCSEWPVFRRWGGELHCMTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0105251_100690311	3300009011	Switchgrass Rhizosphere	RRWGRELKSMTSTSDDNTFADIVGADVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0105240_104584282	3300009093	Corn Rhizosphere	VDRRRLIIYIAPNGRFPAGRGGKPLFMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0111539_102161902	3300009094	Populus Rhizosphere	VDRGRLIIYIAPNGRFPAGRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0111538_100564165	3300009156	Populus Rhizosphere	VDRGRLIIYIAPNGRFPADRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0111538_117433561	3300009156	Populus Rhizosphere	QSMTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0105241_104216232	3300009174	Corn Rhizosphere	VDRGRLIIYIAPNGRFPADRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRIWLTDATV*
Ga0105242_119083132	3300009176	Miscanthus Rhizosphere	MTSTTADNTLAEIVGTDVDASDRLAAIDHQIATLSARVKATSSRFAALVPHYQADIDALLDLRLWLTELAV*
Ga0127503_101221901	3300010154	Soil	DSRFAEIVGERTDTDDRLAAIDHQIATLNARAKATSPRFAALVPHYQADIDALLDLRLWLTGATA*
Ga0127503_105173432	3300010154	Soil	MTTSSDAADFAEIVGAETQACDNLAAIDHQIAALHERVKSTSPRFAALIPHYRADIDALLDLRLWLTGAIAS*
Ga0134125_105217552	3300010371	Terrestrial Soil	RRRLNIHIAPNGRFPAGRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0134125_110197732	3300010371	Terrestrial Soil	MTSTSDDNTFAEIVGTDVDASDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0134126_102334192	3300010396	Terrestrial Soil	VDRGRLIIYIAPNGRFPAGRGGKPLFMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0134121_114485322	3300010401	Terrestrial Soil	GTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV*
Ga0134121_130958602	3300010401	Terrestrial Soil	ELSCMTSTSDDNTFAEIVGADVETSDRLAAIDHQIATLNARAKATSPRFAALVPHYRADIDALLDLRLWLTGAAV*
Ga0134123_102550572	3300010403	Terrestrial Soil	VDRGRLIIYIAPNGRFPAGRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0105246_121474602	3300011119	Miscanthus Rhizosphere	EIVGAQTDSGDRLAAIDDQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTGASV
Ga0150985_1047571882	3300012212	Avena Fatua Rhizosphere	MTSTSDDNTFAEIVGTDVTTGDRLAAIDHQIATLNARVKATSPRFAALVPHYQADIDALLDLRLWLTEAAV*
Ga0150985_1073534172	3300012212	Avena Fatua Rhizosphere	MTSTSDDSTFAEIVGTEVDTGDRLAAIDHQIATLNARVKATSPRFAALVPHYQADIDALLDLRLWLTDVAV*
Ga0150985_1124564412	3300012212	Avena Fatua Rhizosphere	MSSTSDDSRFAEIVGAQTDSGDRLAAIDDQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTGASV*
Ga0150984_1038171522	3300012469	Avena Fatua Rhizosphere	MASTSEDSRFAEIVGADTENSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTDDSF*
Ga0150984_1052718902	3300012469	Avena Fatua Rhizosphere	VDRGRLIIHIAPNGRFPAVRAGKPSFMTSTSDDNTFAEIVGTDVTTGDRLAAIDHQIATLNARVKATSPRFAALVPHYQADIDALLDLRLWLTEAAV*
Ga0150984_1195496492	3300012469	Avena Fatua Rhizosphere	MTSTSDDSRFAEIIGAQTDSGDRLAAIDDQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTGASV*
Ga0157299_100509412	3300012899	Soil	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0164300_111775302	3300012951	Soil	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0164299_111197852	3300012958	Soil	MTSTSDDNTFAEIVGTDVEPSDRLAAIDHQIATLNARVKATSPRFAALVPPYRADIDALLDLRLWLTDTVV*
Ga0164301_106095791	3300012960	Soil	PETDHLHCSEWPVFRPWGRELHGMTSTSDDNTFAEIVGTDMEPSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0164302_105666922	3300012961	Soil	VDRGRLIIYIAPNGRFPADRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0164308_105365252	3300012985	Soil	MTSTSDDNTFAEIVGTDMEPSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0164307_100935511	3300012987	Soil	DDNTFAEIVGTDVETSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0157371_105320072	3300013102	Corn Rhizosphere	VDRRRLIIYIAPNGRFPAGRGGKPLFMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0157371_105910331	3300013102	Corn Rhizosphere	MTSTSDDNTFAEIVGADVDTSDRLAAVDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0157370_103544492	3300013104	Corn Rhizosphere	MTSTSDDNTFAEIVGADVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLR
Ga0157378_114219922	3300013297	Miscanthus Rhizosphere	MTSTSDDSRFAEIVGAQTDSGDRLAAIDDQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTG
Ga0157372_126379712	3300013307	Corn Rhizosphere	CGKLIIHIAPNGRFSDAGAGKLQSMTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0157375_105871362	3300013308	Miscanthus Rhizosphere	MTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWL
Ga0157375_118383621	3300013308	Miscanthus Rhizosphere	RWGGELHCMTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV*
Ga0132258_101081914	3300015371	Arabidopsis Rhizosphere	MTSTSEDSRYAEIVGANTDTDDRLAAIDHQIATLNARAKATSPRFAALVPHYRADIDALLDLRLWLTGAF*
Ga0132258_132275992	3300015371	Arabidopsis Rhizosphere	MTTTSDAEGFAQIVGADARGCDNLAAIDHQIAALHARAKATSPRFAALIPHYQADIDALLDLRLWLSGYASCAAC*
Ga0132257_1036740452	3300015373	Arabidopsis Rhizosphere	MTTTSDAEGFAQIVGADARGCDNLAAIDHQIAALHARAKATSPRFAALIPHYQADIDALLDL
Ga0163161_102900222	3300017792	Switchgrass Rhizosphere	APNGRFSDAGAGKLQSMTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0190266_101501712	3300017965	Soil	MTSTSEDSRFAEIVGADTENSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTDAAV
Ga0066655_101395882	3300018431	Grasslands Soil	MTPTSDDSRFAEVVGADAGTPDRLAAIDDQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTGASV
Ga0190274_100152163	3300018476	Soil	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDAMV
Ga0190267_100910062	3300019767	Soil	MTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDAAV
Ga0197907_101841661	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	LRETDHPHCSEWPVFRRWGRELQSMTSTSDDNTFAEIVGTDVETSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Ga0197907_103736842	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTSDDSTFAEIVGTEVDTSDRLEAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0206356_115806791	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	RRWGRELQSMTSTSDDNTFAEIVGTDVETSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Ga0206356_116689861	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	DDSTFAEIVGTEVDTSDRLEAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0206352_101632931	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	SDDSTFAEIVGTEVDTSDRLEAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0206350_104527551	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	TFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Ga0206350_115169332	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0206354_107995392	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Ga0206354_114060522	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	RGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0206353_103134171	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	QRQDGVDRRRLIIYIAPNGRFPAGRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0213876_101553033	3300021384	Plant Roots	MTSTSDDSRFAEVVGAQTDSGDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTGASV
Ga0222624_12680831	3300021951	Groundwater Sediment	SDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDAMV
Ga0224712_104755271	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	DDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0224712_106706321	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	SDDKTFAEIVGTDVETSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Ga0222622_113540062	3300022756	Groundwater Sediment	GGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0207656_102749462	3300025321	Corn Rhizosphere	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Ga0207643_102827822	3300025908	Miscanthus Rhizosphere	GRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0207643_104474712	3300025908	Miscanthus Rhizosphere	MTSTSEDSRFAEIVGADTENSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTGASV
Ga0207705_101898782	3300025909	Corn Rhizosphere	MTSTSDDNTFAEIVGADVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Ga0207654_109465801	3300025911	Corn Rhizosphere	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALL
Ga0207663_109351172	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTSNDSRFAEIVGAQTDTDDRLAAIDHQIATLNARAKATSPRFAALVPHYRADIDALLDLRLWLTGASV
Ga0207659_117118932	3300025926	Miscanthus Rhizosphere	DRGRLIIYIAPNGRFPAGRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0207700_110181022	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MDGFRPWVVRELSHMTSTSDDSRFAEIVGAQTETGDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Ga0207709_111063821	3300025935	Miscanthus Rhizosphere	RLIIYIAPNGRFPAGRGGKPLFMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0207669_109184121	3300025937	Miscanthus Rhizosphere	DRRRLNIHIAPNGRFPAGRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0207661_106156301	3300025944	Corn Rhizosphere	LQSMTSTSDDNTFAEIVGTDVETSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Ga0207661_108394541	3300025944	Corn Rhizosphere	RLIIYIAPNGRFPAGRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0207667_112585362	3300025949	Corn Rhizosphere	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTELAV
Ga0207668_113072302	3300025972	Switchgrass Rhizosphere	AGRGGKPLFMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0207677_120924822	3300026023	Miscanthus Rhizosphere	GAGKLQSMTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Ga0207639_110370141	3300026041	Corn Rhizosphere	MTSTSDDNTFAEIVGADVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRL
Ga0207678_117192851	3300026067	Corn Rhizosphere	MTSTSDDSRFAEIVGAQTDSGDRLAAIDDQIATLNARVKATSPRFAALVPHYRADIDALLDL
Ga0207708_102281592	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	GELHCMTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTELAV
Ga0207641_113969512	3300026088	Switchgrass Rhizosphere	ATNGRFPAGRGGKPSCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSAWVKATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0207648_114216192	3300026089	Miscanthus Rhizosphere	MTSTSDDNTFAEIVGTDVDTSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTE
Ga0207683_110901782	3300026121	Miscanthus Rhizosphere	MTSTSEDSRFAEIVGADTENSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTEAAI
Ga0209178_14156912	3300027725	Agricultural Soil	SCMTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVRATSPRFAALVPHYQADIDALLDLRLWLTDATV
Ga0247818_107364782	3300028589	Soil	GQLIVHIAPNGGFSGCGAGNPACMTSTSEDSRFAEIVGADTENSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTDAAV
Ga0247821_107862261	3300028596	Soil	MTSTSEDSRFAEIVGADTENSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTDATV
Ga0307276_100132662	3300028705	Soil	MTSTSDDNTFAEIVGTDVTTGDRLAAIDHQIATLNARVKATSPRFAALVPHYQADIDALLDLRLWLTEATV
Ga0307298_101251812	3300028717	Soil	MTSTSEDSRFAEIVGADTENSDRLAAIDHQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTEFAV
Ga0307288_100151492	3300028778	Soil	MTSTSDDSTFAEIVGTTVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDAMV
Ga0307300_102958032	3300028880	Soil	NGRFPAGRGGKPSCMTSTSDDSTFAEIVGTTVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDAMV
Ga0247826_103765661	3300030336	Soil	RQDGLDRRRLIVHIAPNGGVSGRHGRELSPMTSTSDDSTFADIVGTDVETSDRLAAIDHQIATLNARAKATSPRFAALVPHYRADIDALLDLRLWLTDAAF
Ga0308202_10523071	3300030902	Soil	DDSTFAEIVGTTVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDAMV
Ga0308189_104372542	3300031058	Soil	MTSTSDDNTFAEIVGTDVTTGDRLAAIDHQIATLNARVKATSPRFAALVPHYQADIDALLDLRLWLTEVTV
Ga0308197_102153202	3300031093	Soil	MTSTSGDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVKATSPRFAALVPHYQADIDALLDLRLWLTDAMV
Ga0308187_103233241	3300031114	Soil	MTSTSDDSTFAEIVGTEVDTSDRLAAIDHQIATLSARVRATSPRFAALVPHYQADIDALLDLRLWLTEAVV
Ga0373948_0161234_302_517	3300034817	Rhizosphere Soil	MTSTSDDSRFAEIIGAQTDSGDRLAAIDDQIATLNARVKATSPRFAALVPHYRADIDALLDLRLWLTGASV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F058465

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences