NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F058348

Metagenome / Metatranscriptome Family F058348

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F058348
Family Type Metagenome / Metatranscriptome
Number of Sequences 135
Average Sequence Length 42 residues
Representative Sequence LDRWTQPGANLSLGKFGFYIPGNDQVALSSFAHYADLNIR
Number of Associated Samples 114
Number of Associated Scaffolds 135

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.50 %
% of genes near scaffold ends (potentially truncated) 97.04 %
% of genes from short scaffolds (< 2000 bps) 88.15 %
Associated GOLD sequencing projects 109
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (91.111 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil
(11.852 % of family members)
Environment Ontology (ENVO) Unclassified
(30.370 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(59.259 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 135 Family Scaffolds
PF01408GFO_IDH_MocA 3.70
PF12838Fer4_7 2.96
PF05544Pro_racemase 2.96
PF01019G_glu_transpept 2.22
PF13620CarboxypepD_reg 2.22
PF00072Response_reg 1.48
PF13432TPR_16 1.48
PF10079BshC 1.48
PF07602DUF1565 1.48
PF03551PadR 1.48
PF10646Germane 1.48
PF10509GalKase_gal_bdg 1.48
PF00248Aldo_ket_red 1.48
PF02810SEC-C 1.48
PF04307YdjM 0.74
PF01436NHL 0.74
PF01292Ni_hydr_CYTB 0.74
PF00034Cytochrom_C 0.74
PF14698ASL_C2 0.74
PF05362Lon_C 0.74
PF13483Lactamase_B_3 0.74
PF00903Glyoxalase 0.74
PF02965Met_synt_B12 0.74
PF02652Lactate_perm 0.74
PF01339CheB_methylest 0.74
PF12800Fer4_4 0.74
PF13565HTH_32 0.74
PF09862DUF2089 0.74
PF04191PEMT 0.74
PF02463SMC_N 0.74
PF028262-Hacid_dh_C 0.74
PF02954HTH_8 0.74
PF08450SGL 0.74
PF00211Guanylate_cyc 0.74
PF03176MMPL 0.74
PF13431TPR_17 0.74
PF16916ZT_dimer 0.74
PF00005ABC_tran 0.74
PF01120Alpha_L_fucos 0.74
PF01061ABC2_membrane 0.74
PF01833TIG 0.74
PF01638HxlR 0.74
PF13460NAD_binding_10 0.74
PF07876Dabb 0.74
PF13884Peptidase_S74 0.74
PF06762LMF1 0.74
PF14871GHL6 0.74
PF13229Beta_helix 0.74
PF00037Fer4 0.74
PF00691OmpA 0.74
PF07676PD40 0.74
PF13424TPR_12 0.74
PF12840HTH_20 0.74
PF06739SBBP 0.74
PF00069Pkinase 0.74
PF13502AsmA_2 0.74
PF07690MFS_1 0.74
PF01244Peptidase_M19 0.74
PF12867DinB_2 0.74
PF00326Peptidase_S9 0.74
PF00141peroxidase 0.74

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 135 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 2.96
COG3938Proline racemase/hydroxyproline epimeraseAmino acid transport and metabolism [E] 2.96
COG0405Gamma-glutamyltranspeptidaseAmino acid transport and metabolism [E] 2.22
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 2.22
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 1.48
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 1.48
COG2201Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domainsSignal transduction mechanisms [T] 1.48
COG0376Catalase (peroxidase I)Inorganic ion transport and metabolism [P] 0.74
COG0466ATP-dependent Lon protease, bacterial typePosttranslational modification, protein turnover, chaperones [O] 0.74
COG1033Predicted exporter protein, RND superfamilyGeneral function prediction only [R] 0.74
COG1067Predicted ATP-dependent proteasePosttranslational modification, protein turnover, chaperones [O] 0.74
COG1410Methionine synthase I, cobalamin-binding domainAmino acid transport and metabolism [E] 0.74
COG1620L-lactate permeaseEnergy production and conversion [C] 0.74
COG1750Predicted archaeal serine protease, S18 familyGeneral function prediction only [R] 0.74
COG1969Ni,Fe-hydrogenase I cytochrome b subunitEnergy production and conversion [C] 0.74
COG1988Membrane-bound metal-dependent hydrolase YbcI, DUF457 familyGeneral function prediction only [R] 0.74
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.74
COG2355Zn-dependent dipeptidase, microsomal dipeptidase homologPosttranslational modification, protein turnover, chaperones [O] 0.74
COG2409Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamilyGeneral function prediction only [R] 0.74
COG2864Cytochrome b subunit of formate dehydrogenaseEnergy production and conversion [C] 0.74
COG3038Cytochrome b561Energy production and conversion [C] 0.74
COG3386Sugar lactone lactonase YvrECarbohydrate transport and metabolism [G] 0.74
COG3391DNA-binding beta-propeller fold protein YncEGeneral function prediction only [R] 0.74
COG3480Predicted secreted protein YlbL, contains PDZ domainSignal transduction mechanisms [T] 0.74
COG3658Cytochrome b subunit of Ni2+-dependent hydrogenaseEnergy production and conversion [C] 0.74
COG3669Alpha-L-fucosidaseCarbohydrate transport and metabolism [G] 0.74
COG4117Thiosulfate reductase cytochrome b subunitInorganic ion transport and metabolism [P] 0.74


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms91.85 %
UnclassifiedrootN/A8.15 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001175|JGI12649J13570_1022043All Organisms → cellular organisms → Bacteria → Acidobacteria685Open in IMG/M
3300001356|JGI12269J14319_10316010All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium559Open in IMG/M
3300003368|JGI26340J50214_10000396All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis15696Open in IMG/M
3300004080|Ga0062385_10513372All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis742Open in IMG/M
3300004091|Ga0062387_100503935All Organisms → cellular organisms → Bacteria846Open in IMG/M
3300004091|Ga0062387_100586421All Organisms → cellular organisms → Bacteria → Acidobacteria796Open in IMG/M
3300004092|Ga0062389_103666688All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium576Open in IMG/M
3300004102|Ga0058888_1392348All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium552Open in IMG/M
3300004470|Ga0068967_1261893All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium826Open in IMG/M
3300004479|Ga0062595_101192339All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300005526|Ga0073909_10197586All Organisms → cellular organisms → Bacteria867Open in IMG/M
3300005529|Ga0070741_10208515All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1895Open in IMG/M
3300005529|Ga0070741_11452246All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium567Open in IMG/M
3300005534|Ga0070735_10159683All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1394Open in IMG/M
3300005538|Ga0070731_10278219All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1111Open in IMG/M
3300005542|Ga0070732_10246928All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300005557|Ga0066704_10332849All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1021Open in IMG/M
3300005569|Ga0066705_10343589All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium942Open in IMG/M
3300005610|Ga0070763_10872185All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium534Open in IMG/M
3300005712|Ga0070764_10273915All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium967Open in IMG/M
3300005712|Ga0070764_10680678All Organisms → cellular organisms → Bacteria → Acidobacteria632Open in IMG/M
3300005921|Ga0070766_10746910All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300005952|Ga0080026_10145835All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium682Open in IMG/M
3300006059|Ga0075017_100264445All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1261Open in IMG/M
3300006059|Ga0075017_100748915All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.753Open in IMG/M
3300006102|Ga0075015_100015000All Organisms → cellular organisms → Bacteria3339Open in IMG/M
3300006175|Ga0070712_100295630All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1309Open in IMG/M
3300006354|Ga0075021_11058621All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium530Open in IMG/M
3300009088|Ga0099830_11817383All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium509Open in IMG/M
3300009520|Ga0116214_1379937All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium549Open in IMG/M
3300009521|Ga0116222_1212249All Organisms → cellular organisms → Bacteria834Open in IMG/M
3300009523|Ga0116221_1012665All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4784Open in IMG/M
3300009524|Ga0116225_1465728All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300009617|Ga0116123_1178668All Organisms → cellular organisms → Bacteria → Proteobacteria541Open in IMG/M
3300009633|Ga0116129_1053027All Organisms → cellular organisms → Bacteria → Acidobacteria1250Open in IMG/M
3300009638|Ga0116113_1051830All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae949Open in IMG/M
3300009698|Ga0116216_10855284All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium545Open in IMG/M
3300009759|Ga0116101_1059108All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae838Open in IMG/M
3300010343|Ga0074044_10261456All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1141Open in IMG/M
3300010343|Ga0074044_10923778All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium571Open in IMG/M
3300010379|Ga0136449_100272072All Organisms → cellular organisms → Bacteria3121Open in IMG/M
3300010379|Ga0136449_102978329All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium662Open in IMG/M
3300010379|Ga0136449_104013244All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium549Open in IMG/M
3300010397|Ga0134124_11105588All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium809Open in IMG/M
3300011271|Ga0137393_11433006All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium580Open in IMG/M
3300012203|Ga0137399_10471386All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio1051Open in IMG/M
3300014657|Ga0181522_10082966All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 891837Open in IMG/M
3300014657|Ga0181522_10375158All Organisms → cellular organisms → Bacteria → Acidobacteria849Open in IMG/M
3300015052|Ga0137411_1018423All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1094Open in IMG/M
3300017822|Ga0187802_10178636All Organisms → cellular organisms → Bacteria814Open in IMG/M
3300017823|Ga0187818_10036987All Organisms → cellular organisms → Bacteria2096Open in IMG/M
3300017933|Ga0187801_10337331All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300017942|Ga0187808_10212703All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium861Open in IMG/M
3300017943|Ga0187819_10455724Not Available732Open in IMG/M
3300017946|Ga0187879_10464659All Organisms → cellular organisms → Bacteria → Acidobacteria702Open in IMG/M
3300017959|Ga0187779_11287673All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium517Open in IMG/M
3300017966|Ga0187776_10759804All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium692Open in IMG/M
3300018006|Ga0187804_10185561All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300018013|Ga0187873_1067092All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1491Open in IMG/M
3300018013|Ga0187873_1077000All Organisms → cellular organisms → Bacteria1361Open in IMG/M
3300018019|Ga0187874_10144760All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1008Open in IMG/M
3300018020|Ga0187861_10460536All Organisms → cellular organisms → Bacteria → Proteobacteria527Open in IMG/M
3300018023|Ga0187889_10122057All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Bryocella → Bryocella elongata1263Open in IMG/M
3300018042|Ga0187871_10271192All Organisms → cellular organisms → Bacteria941Open in IMG/M
3300018042|Ga0187871_10348453All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300018062|Ga0187784_11095244Not Available632Open in IMG/M
3300018085|Ga0187772_10615986All Organisms → cellular organisms → Bacteria → Acidobacteria773Open in IMG/M
3300018085|Ga0187772_10778400Not Available690Open in IMG/M
3300018086|Ga0187769_11044855All Organisms → cellular organisms → Bacteria → Acidobacteria618Open in IMG/M
3300018088|Ga0187771_10921070All Organisms → cellular organisms → Bacteria741Open in IMG/M
3300018090|Ga0187770_11560807All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae538Open in IMG/M
3300019082|Ga0187852_1338526All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300020582|Ga0210395_10435417All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium986Open in IMG/M
3300020583|Ga0210401_11094067All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium655Open in IMG/M
3300021088|Ga0210404_10150711All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1218Open in IMG/M
3300021178|Ga0210408_11331773All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium543Open in IMG/M
3300021180|Ga0210396_10354598All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1293Open in IMG/M
3300021403|Ga0210397_11036011All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium637Open in IMG/M
3300021405|Ga0210387_10637487All Organisms → cellular organisms → Bacteria → Acidobacteria946Open in IMG/M
3300021475|Ga0210392_11259166Not Available554Open in IMG/M
3300021478|Ga0210402_10846251All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae841Open in IMG/M
3300021479|Ga0210410_10057355All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3398Open in IMG/M
3300021479|Ga0210410_11225609All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium642Open in IMG/M
3300021479|Ga0210410_11463155All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300021559|Ga0210409_10781100All Organisms → cellular organisms → Bacteria827Open in IMG/M
3300021560|Ga0126371_10534608All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium1321Open in IMG/M
3300021560|Ga0126371_11565226All Organisms → cellular organisms → Bacteria → Acidobacteria786Open in IMG/M
3300022840|Ga0224549_1036035All Organisms → cellular organisms → Bacteria → Acidobacteria671Open in IMG/M
3300022873|Ga0224550_1007133Not Available1568Open in IMG/M
3300025404|Ga0208936_1042724All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300027024|Ga0207819_1029237All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium697Open in IMG/M
3300027039|Ga0207855_1027244Not Available775Open in IMG/M
3300027297|Ga0208241_1050153All Organisms → cellular organisms → Bacteria → Acidobacteria661Open in IMG/M
3300027330|Ga0207777_1006649All Organisms → cellular organisms → Bacteria2597Open in IMG/M
3300027575|Ga0209525_1123930All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium602Open in IMG/M
3300027604|Ga0208324_1033900All Organisms → cellular organisms → Bacteria1528Open in IMG/M
3300027604|Ga0208324_1062968Not Available1066Open in IMG/M
3300027783|Ga0209448_10014307All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2570Open in IMG/M
3300027783|Ga0209448_10172712All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300027867|Ga0209167_10200125All Organisms → cellular organisms → Bacteria1063Open in IMG/M
3300027884|Ga0209275_10602747All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium630Open in IMG/M
3300027889|Ga0209380_10551512All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300027905|Ga0209415_10351844All Organisms → cellular organisms → Bacteria1226Open in IMG/M
3300027905|Ga0209415_10904080All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300029914|Ga0311359_10089863All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3017Open in IMG/M
3300029915|Ga0311358_10649830All Organisms → cellular organisms → Bacteria → Acidobacteria785Open in IMG/M
3300029917|Ga0311326_10350755All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300029953|Ga0311343_10100598All Organisms → cellular organisms → Bacteria → Acidobacteria3322Open in IMG/M
3300030042|Ga0302300_1214185All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium534Open in IMG/M
3300030044|Ga0302281_10387655All Organisms → cellular organisms → Bacteria → Acidobacteria541Open in IMG/M
3300030057|Ga0302176_10022457All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2387Open in IMG/M
3300030503|Ga0311370_11136911All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium854Open in IMG/M
3300030524|Ga0311357_10420819All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1257Open in IMG/M
3300030813|Ga0265750_1036328All Organisms → cellular organisms → Bacteria → Acidobacteria698Open in IMG/M
3300030906|Ga0302314_10869824All Organisms → cellular organisms → Bacteria → Acidobacteria890Open in IMG/M
3300030916|Ga0075386_11340482All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium641Open in IMG/M
3300031234|Ga0302325_11065636All Organisms → cellular organisms → Bacteria → Acidobacteria1094Open in IMG/M
3300031238|Ga0265332_10361419All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300031241|Ga0265325_10475280All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300031711|Ga0265314_10229626All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales1077Open in IMG/M
3300031715|Ga0307476_10190818Not Available1485Open in IMG/M
3300031715|Ga0307476_10375338All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1048Open in IMG/M
3300032160|Ga0311301_10140043All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4438Open in IMG/M
3300032180|Ga0307471_103142591All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium585Open in IMG/M
3300032515|Ga0348332_14269058All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium995Open in IMG/M
3300032770|Ga0335085_11167681All Organisms → cellular organisms → Bacteria820Open in IMG/M
3300032770|Ga0335085_11651939All Organisms → cellular organisms → Bacteria → Acidobacteria662Open in IMG/M
3300032782|Ga0335082_10132734All Organisms → cellular organisms → Bacteria2431Open in IMG/M
3300032805|Ga0335078_10914090All Organisms → cellular organisms → Bacteria1052Open in IMG/M
3300032893|Ga0335069_10116690All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3349Open in IMG/M
3300032893|Ga0335069_10834415All Organisms → cellular organisms → Archaea → TACK group1035Open in IMG/M
3300032897|Ga0335071_11061769Not Available756Open in IMG/M
3300032898|Ga0335072_10465895All Organisms → cellular organisms → Bacteria1325Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil11.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.37%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland6.67%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil5.93%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil5.93%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland5.93%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil5.19%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.44%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.44%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.44%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland3.70%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.22%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.22%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere2.22%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.96%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.96%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.96%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog2.96%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.48%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.48%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.48%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.74%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.74%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.74%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.74%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.74%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.74%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001175Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3EnvironmentalOpen in IMG/M
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300003368Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004102Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF212 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004470Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004620Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005952Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009617Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100EnvironmentalOpen in IMG/M
3300009633Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10EnvironmentalOpen in IMG/M
3300009638Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10EnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009759Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018013Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100EnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018020Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100EnvironmentalOpen in IMG/M
3300018023Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300019082Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40EnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022840Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5EnvironmentalOpen in IMG/M
3300022873Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14EnvironmentalOpen in IMG/M
3300025404Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027024Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42 (SPAdes)EnvironmentalOpen in IMG/M
3300027039Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)EnvironmentalOpen in IMG/M
3300027297Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)EnvironmentalOpen in IMG/M
3300027330Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)EnvironmentalOpen in IMG/M
3300027575Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027604Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027783Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300029914III_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029915III_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029917I_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029953II_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300030042Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_1EnvironmentalOpen in IMG/M
3300030044Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2EnvironmentalOpen in IMG/M
3300030057Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1EnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030813Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030906Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3EnvironmentalOpen in IMG/M
3300030916Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031238Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaGHost-AssociatedOpen in IMG/M
3300031241Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaGHost-AssociatedOpen in IMG/M
3300031711Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaGHost-AssociatedOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12649J13570_102204313300001175Forest SoilRQGDSWIVLDRFAPAGNNLSLGRFGFYIPGNDQVALANFGHYVDLSSR*
JGI12269J14319_1031601033300001356Peatlands SoilAWFVLDRWTLPGTNLASGRFGFYIPGGDQVSLANFNHYADLNIH*
JGI26340J50214_10000396183300003368Bog Forest SoilWTVLDRWSQPGINLGRGKFGFLIPGDDQVAVSSFAHYAVSW*
Ga0062385_1051337223300004080Bog Forest SoilDRWTQPGANLSLGKFGFYIPGNDEVALSSFSHYGDLNAH*
Ga0062387_10050393523300004091Bog Forest SoilILDKWTAPGTNLAAGKFGFYIPGNDQVALASFSFYADLNAQH*
Ga0062387_10058642123300004091Bog Forest SoilGDSWVVLDRWTPSGNNLSLGEFGFYIPGNDQVALSNFGHYVDLTIR*
Ga0062389_10366668813300004092Bog Forest SoilHQIRQGDSWVVLDRWIQSGTNLSLGRFGFYIPGSDQVALSSFGHYADFSPR*
Ga0058888_139234813300004102Forest SoilDRWTQPGANLSLGKFGFYIPGSDQVALSSFAHYADLNIG*
Ga0068967_126189313300004470Peatlands SoilVVLDRWTQPGSNLSLGKFGFYIPGNDQVALSSFGHYVDLNTR*
Ga0062595_10119233913300004479SoilTSLIRQGENWAILERWAQAGSNLSLGRFGFYIPGNDQVALSSFGHYVDLNTR*
Ga0068957_141812923300004620Peatlands SoilVHQIKHGDSWTVLDRWTQPGANLSVGKFGFYIPGDDQVALSSFAHYVELKLR*
Ga0073909_1019758613300005526Surface SoilGDSWTVVDRWTQPGSNPGQGKFGLYIPGSDQVELSGFAHYADLKIR*
Ga0070741_1020851543300005529Surface SoilDRWTQPGANLSLGKFGFYIPGNDEVVLSGFAHYADLNIR*
Ga0070741_1145224613300005529Surface SoilWTQPGANLSLGKFGFYIPGNDEVVLSGFAHYADLNIR*
Ga0070735_1015968313300005534Surface SoilPGTNLGLGKFGFYIPGSDQVALSSFAHYVDLNLR*
Ga0070731_1027821933300005538Surface SoilILDKWTAPGSNLASGKFGFYIPGNDQVVLASFSFYADLNIQH*
Ga0070732_1000480783300005542Surface SoilHQIKHGDSWTVLDRWTHPGADLSLGKFGFYLPGTDQLALSSFAHYGDLNIR*
Ga0070732_1024692823300005542Surface SoilSWTVVDRWTQPGANLSQGKFGFYLPGNDQVALSGFAHYADLNIH*
Ga0066704_1033284923300005557SoilWSQPGTDLSAGKFGFYIPGKDQVALSNFRHYAELKAN*
Ga0066705_1034358913300005569SoilIKQGNSWTVLDRWTHPGTNLSLGKFGFYIPGSDQVVLSSFAHYADLNIR*
Ga0070763_1087218513300005610SoilLDKWTAPGSNLAAGKFGFYIPGNDQVILASFSFYGDLNMQH*
Ga0070764_1027391523300005712SoilQPGSNLSLGRFGFYIPGSDQVALSSFAHYVDFSPR*
Ga0070764_1068067813300005712SoilIRQGDNWVVLDRWADPEDNLTLGRFGFFIPGNDQVALSSFSHYVDLNPR*
Ga0070766_1074691023300005921SoilTQPGSNLSSGKFGFYIPGDDQVALSNFAHYADLSIR*
Ga0080026_1014583513300005952Permafrost SoilDRWKQSGTNLNQSKFGFYIPGSDEVALSSFAHYADLNIR*
Ga0075017_10026444513300006059WatershedsVLDRWTQPGANLSLGKFGFYIPGNDEDALSSFAHYVDLNIR*
Ga0075017_10074891523300006059WatershedsLDRWAQPAGNLNLGKFGFYIPGNDQVALSSFGHYVDLNTR*
Ga0075015_10001500013300006102WatershedsRWTLAGTNLSSGKFGFYLPGGDQVSLASFGHYLDLNLH*
Ga0070712_10029563023300006175Corn, Switchgrass And Miscanthus RhizosphereKHGESWTVLDRWTQPGVSLSQGKFGFYIPGSDQVALSSFAHYADLNIR*
Ga0075021_1105862113300006354WatershedsVLDRWTQPGANLGLGKFGFYLPGNDEVALSGFAYYADLNIH*
Ga0099830_1181738313300009088Vadose Zone SoilDSWSQPGTNLAAGKFGFYIPSNDEVSLANFTHYPDLVSH*
Ga0116214_137993713300009520Peatlands SoilVTLDKWTAPGTNLTAGKFGFYIPGSDQVALASFGYYADLNAQH*
Ga0116222_121224923300009521Peatlands SoilWVVLDRWTQPGNNLSLGRFGFYIPGNDQVALSTFGHYVDLNTR*
Ga0116221_101266543300009523Peatlands SoilDRWTQPGSNLSLGKFGFYIPGNDQVALSNFGYYVDLNTR*
Ga0116225_146572813300009524Peatlands SoilRWTQPGSNLSLGKFGFYIPGNDQVALSNFGYYVDLNTR*
Ga0116123_117866823300009617PeatlandWVVLDRWTQPGSNLSLGRFGFYIPGNDQVALSSFGHYVDLNTR*
Ga0116129_105302713300009633PeatlandRFSPPGSNLSQGKFGFHISNNDQVSLSNFGHYVDLNVK*
Ga0116113_105183023300009638PeatlandHGESWTVLDRWTQPGANLSLGKFGFYIPGNDQVAISSFAHYVDLNLR*
Ga0116216_1085528413300009698Peatlands SoilRWTQPGSNLSLGKFGFYIPGNDQVALSSFGHYVDLNIR*
Ga0116101_105910823300009759PeatlandTVLDRWTQPGANLSLGKFGFYIPGNDQVAISSFAHYVDLNLR*
Ga0074044_1026145613300010343Bog Forest SoilDAWIVLDRWTLPGSNLAAGRFGFYLPGGDQMSLANFNHYADLNLH*
Ga0074044_1092377823300010343Bog Forest SoilWTQPGTNLSLGKFGFYIPGNDQVALSSFSHYVDLNTR*
Ga0136449_10027207213300010379Peatlands SoilSWTILDRWTQPGANLSVGKVGFYIPGDDQVALSSFVHYADLNIR*
Ga0136449_10297832923300010379Peatlands SoilRWTQPGSNLSLGRFGFYIPGNDQVALSSFGHYVDLNTR*
Ga0136449_10401324413300010379Peatlands SoilVILDKWSVPGTNLAAGKFGFYIPGNDQVSLASFSHYADLNAQH*
Ga0134124_1110558833300010397Terrestrial SoilDRWDETGANPGSGKFGFYIPGGDQVGLSSFGHYIDLNLR*
Ga0137393_1143300613300011271Vadose Zone SoilGDNWTVLDRWTQPGANLSLGKFGFYIPGNDQVALSSFAHYGDLKIR*
Ga0137399_1047138633300012203Vadose Zone SoilLIRQGENWAILERWAQAGSNLSLGRFGFYIPGNDQVALSSFGHYVDLNTR*
Ga0181522_1008296613300014657BogQIKHGDSWTVLDRWTQPGADFSQGKFGFYLPGNDEVALSSFAHYGDLNIH*
Ga0181522_1037515813300014657BogPSGNLTLGKFGFYIPGNDQVALSSFGHYLDLNIH*
Ga0137411_101842313300015052Vadose Zone SoilVTIGSSHWIVLDRWTQPGANLSQGKFGFYIPGNDQVALSSFTHYADLNIR*
Ga0187802_1017863613300017822Freshwater SedimentLDRWTQPGTNLSLGKFGFYIPGDDQVALSSFAHYAVNW
Ga0187818_1003698713300017823Freshwater SedimentVLDKWTSPGTNLSLGKFGFYIPGNDQVALVNFSHYAELNTQH
Ga0187801_1033733113300017933Freshwater SedimentILDKWTAPGSNLAAAKFGFYIPGNDQVILASFSFYADLNMQH
Ga0187808_1021270313300017942Freshwater SedimentPVLDRWKDPGTNPSLGKFGFYIPGDDQVSLASFAHYADLNVR
Ga0187819_1045572413300017943Freshwater SedimentWTVLDRWTQPGANLSLGKFGFYIPGNDEVALSSFAHYVDLNLR
Ga0187879_1046465913300017946PeatlandFAPAGNNLSLGRFGFYIPGNDQVALANFGHYVDLSSR
Ga0187779_1128767323300017959Tropical PeatlandVNQVRDGDSWTVLDRWTQPGVNLSAGKFGFLIPGNDQVTLSSFAHYADLNIR
Ga0187776_1075980413300017966Tropical PeatlandRWTQPGANLSLGKFGFYIPGNDQVALSSFAHYGDLSLR
Ga0187804_1018556123300018006Freshwater SedimentDKWTVAGTNLAAGKFGFYIPGNDQVALASFSHYADLNAQH
Ga0187873_106709223300018013PeatlandVLDRWTQPGSNLSLGKFGFYIPGNDQVALSSFGHYVDLNTR
Ga0187873_107700013300018013PeatlandLIRHGDSWTVLDRWTQPGANLSLGKFGFYIPGDDQVALSSFAHYADLNIR
Ga0187874_1014476013300018019PeatlandVVLDRWTQPGSNLSLGKFGFYIPGNDQVALSSFGHYVDLNTR
Ga0187861_1046053623300018020PeatlandVLDRWTQPGSNLSLGRFGFYIPGNDQVALSSFGHYVDLNTR
Ga0187889_1012205713300018023PeatlandVVLDRWTQPGSNLSLGRFGFYIPGNDQVALSSFGHYVDLNTR
Ga0187871_1027119213300018042PeatlandSWVVLDRWTQPGSNLSLGRFGFYIPGNDQVDLSTFGHYVDLNTR
Ga0187871_1034845323300018042PeatlandHQIKQGDNWVVLDHWTQAGSTLSLGRFGFYIPGNDQVALANFGHYVDLNTR
Ga0187784_1109524423300018062Tropical PeatlandWSTLDRWTQPGVNPSLGKFGFYIPGEYQVAISNFAHYPDLNLR
Ga0187772_1061598613300018085Tropical PeatlandGDRWSVVDRWTQPSFVVGKFGFYIPGNDQVALSSFAHYAELNLR
Ga0187772_1077840013300018085Tropical PeatlandINHGNSVTVLDRWTQPGTNLSLGKFGFYIPGNDEVVLSSFAYYADLNIR
Ga0187769_1104485523300018086Tropical PeatlandVLDRWTKPGANLSVGKFGFYIPGNDEVALSSFAYYADLNIR
Ga0187771_1092107013300018088Tropical PeatlandQPGVIFGLGKFGFYIPGDDQVALSGFAHYPDLNIR
Ga0187770_1156080723300018090Tropical PeatlandSWTVLDRWRQPGANLTGKFGFYIPGNDEVALSSFAHYADLNLR
Ga0187852_133852623300019082PeatlandGDSWVVLDRWTQPGSNLSLGRFGFYIPGNDQVDLSTFGHYVDLNTR
Ga0210395_1043541723300020582SoilKHGDRWSLLDRWTQPGANLSLGKFGFYIPGSDQVALSSFAHYADLNIG
Ga0210401_1109406723300020583SoilWTQPGAQPAANLSLGKFGFYIPGDDQVALSSFAHYAVNW
Ga0210404_1015071123300021088SoilQGNSWTVVDRWTQPGANLSLGKFGFYIPGSDQVALSSFAHYAVNW
Ga0210408_1133177333300021178SoilTVLDRWTQPGANLSMGKFGFYIPGNEEVSLSSFAHYPDLNIR
Ga0210396_1035459813300021180SoilKQRNSWTIVDRWTQPGANLSLGKFGFYIPGNDQVALSSFAHYADLNIR
Ga0210397_1103601113300021403SoilPGTNLAAGKFGFYIPGNDQVALASFSFYADLNIQH
Ga0210387_1063748723300021405SoilQIRQGDAWVVLDRWTQPGTNLSAGRFGFYLPGGDQVSLANFSHYLDLNVH
Ga0210392_1125916623300021475SoilQIKQGNSWTVLDRWTQPGANLSLGKFGFYIPGNDQVALSSFAHYADLNLH
Ga0210402_1084625113300021478SoilRWTQPGANLSLGKFGFYIPGNDEVALSSFADYADLNLR
Ga0210410_1005735533300021479SoilNSWIVVDRWTQPGANLSLGKFGFYIPGSDQVALSSFAHYADLNIG
Ga0210410_1122560913300021479SoilVILDKWTAPGSNLAAGKFGFYIPGNDQVILASFSFYGDLNMQH
Ga0210410_1146315513300021479SoilHQIKHGDSVTVLDRWTQPGDNLALGKFGFYIPGNDQVALSSFAHYVELNIR
Ga0210409_1078110023300021559SoilWTAPGSNLAAGKFGFYIPGNDQVLLASFSFYADLNMQH
Ga0126371_1053460833300021560Tropical Forest SoilQPGVNLSTGKFGFYIPSNDEVALSSFSQYADLNIR
Ga0126371_1156522613300021560Tropical Forest SoilKNGNSWTVVDRWTQPGANLSAGKFGFYIPGDDQIAVSSFAHYADLNGR
Ga0224549_103603523300022840SoilLLAGWAQPASNLTLGRFGFYIPGNDQVALSSFGHYLDLNVH
Ga0224550_100713323300022873SoilLDRWTQAGSNLSLGRFGFYIPGNDQVALSSFGHYVELNTR
Ga0208936_104272413300025404PeatlandRWTRPGTNLGLGKFGFYIPGNDQVALSNFAHYVDLNIR
Ga0207819_102923723300027024Tropical Forest SoilVSWTVLDRWTQPGANLSAGKFGFYIPGNDEITVSNFSHYADLNIH
Ga0207855_102724413300027039Tropical Forest SoilQFKKGDSWTVLDRWTQPGTNLSQGKFGFYIPGNDQVALSSFAHYADLNIR
Ga0208241_105015313300027297Forest SoilIRQGDNWVVLDRWADPEDNLTLGRFGFFIPGNDQVALSSFSHYVDLNPR
Ga0207777_100664943300027330Tropical Forest SoilRWTLPGTNLASGRFGFYIPGGDQVSLASFGHYLDLNIH
Ga0209525_112393023300027575Forest SoilGDHWTVLDRWTQPGANLSFGKFGFYIPGNDEIALSSFAHYADLNVR
Ga0208324_103390013300027604Peatlands SoilDRWTLPGTNLASGRFGFYIPGGDQVSLANFNHYADLNIH
Ga0208324_106296823300027604Peatlands SoilWTQPGSNLSLGKFGFYIPGNDQVALSSFGHYVDLNIR
Ga0209448_1001430733300027783Bog Forest SoilDSWTVLDRWTQPGANLSLGKFGFYIPGNDEVALSNFAHYADLNTH
Ga0209448_1017271213300027783Bog Forest SoilWTVLDRWTQPGANLSLGKFGFYIPGNDEVAISSFAHYVDLNIH
Ga0209167_1020012533300027867Surface SoilWTAPGTNLAAGKFGFYIPGNDQVALATFSHYADLNIPH
Ga0209275_1060274713300027884SoilQPGANLSLGKFGFYIPGSDQVALSSFAHYADLNIR
Ga0209380_1055151213300027889SoilRWTQPGSNLSSGKFGFYIPGDDQVALSNFAHYADLSIR
Ga0209415_1035184413300027905Peatlands SoilRWTVLDRCTQPGANLSLGKFGFYIPGNDQVALSSFAHYADLNIR
Ga0209415_1090408013300027905Peatlands SoilDRWTQPGSNLSLGKFGFYIPGNDQVALSNFGYYVDLNTR
Ga0311359_1008986313300029914BogWTQPGSNLTLGKFGFYIPGNDQVALSTFGHYLDLNTR
Ga0311358_1064983023300029915BogRQGDNWVVLDRWAQPSSNLALGKFGFYIPGNDQVALSSFGHYLDLNVH
Ga0311326_1035075523300029917BogQPGTNLSLGKFGFYIPGNDQVALSSFAHYVDLNIR
Ga0311343_1010059823300029953BogQPSSNLTLGKFGFYIPGNDQVALSSFGHYLDLNVH
Ga0302300_121418523300030042PalsaQGDSWVVLDRWTQAGSNLSLGRFGFYIPGNDQVALSSFGHYVELNTR
Ga0302281_1038765513300030044FenWVALDRWTQPGSNLTLGKFGFYIPGNDQVALSTFGHYLDLNTR
Ga0302176_1002245723300030057PalsaGESWVVLDRFAQPGANLNAGRFGFYVPGNDQVTLSSFSHYVDLNTK
Ga0311370_1113691113300030503PalsaWSQSGSNLSLGKFGFLIPGNDQVALSSFGHYADLNTR
Ga0311357_1042081923300030524PalsaWVVLDRWTSPGTNLSAGRFGFYLPGGDQISLANFSHYADLNLH
Ga0265750_103632823300030813SoilIRQGDGWLVLDRWALSGSNLSLGKFGFYIPGNDQVALSSFSHYVDLSTR
Ga0302314_1086982423300030906PalsaVLDRWAQPASNLTLGRFGFYIPGNDQVALSSFGHYLDLNVH
Ga0075386_1134048223300030916SoilLDRWTQPGANLSLGKFGFYIPGNDQVALSSFAHYADLNIR
Ga0302325_1106563613300031234PalsaWTQSGSNLSLGKFGFYIPGNDQVALSSFSHYVDFSSR
Ga0265332_1036141923300031238RhizosphereLDHWTQSGANISQGKFGFYLPGNDQITLSSFAHYGELNTR
Ga0265325_1047528013300031241RhizosphereERWTQPGSNLSLGRFGFYIPGNDQVVLSSFGHYVELNPR
Ga0265314_1022962623300031711RhizosphereRWTQPGANLGLGKFGFYIPGNDEVALSSFAHYADLNIR
Ga0307476_1019081813300031715Hardwood Forest SoilDRFTQSGANLSLGRFGFYIPGNDQVALANFGHYVDLNTK
Ga0307476_1037533833300031715Hardwood Forest SoilKHGDSWTVLDRWTHPGADLSLGKFGFYLPGTDQLALSSFAHYGDLNIH
Ga0311301_1014004313300032160Peatlands SoilLDKWTAPGTNLAAGKFGFYIPGNDQVALATFSHYADLNIQH
Ga0307471_10314259123300032180Hardwood Forest SoilLSIPGVDLSSGKFGFLIPGSDEVALSNFSHYADPGAK
Ga0348332_1426905813300032515Plant LitterIRQGDTWVVLDRWTLPGTNLSAGRFGFYLPGGDQISLTNFSHYADLNLH
Ga0335085_1116768113300032770SoilWTQPGVNLSAGKFGFYIPGNDQVALSGFSHYADLSTR
Ga0335085_1165193913300032770SoilRWTQPGANLSQGKFGFYIPGNDQIEVSSFAHYAELNTR
Ga0335082_1013273413300032782SoilSWKVLDRWTQPGANLSQGKFGFYVPGNDQIAVSSFIHYADLNIR
Ga0335078_1091409013300032805SoilTVLDRWTQPGANLSQGKFGFYIPGSDQISLSSFSHYADLNTR
Ga0335069_1011669013300032893SoilTDIVHQVRRGDSWTVLDHWTQPGTNLSQGKFGFYIPGNEQVELSSFSHYTDLTIR
Ga0335069_1083441523300032893SoilWTQPGTNLALGKFGFYLPGNDEVAVSGFTHYADLNIR
Ga0335071_1106176913300032897SoilQAGTNLGQGKFGFYLPGNEQVELSSFAHYADLNTR
Ga0335072_1046589523300032898SoilQQGSNLAAGKFGFLLPGNDEVAIANFSYYLDLNVH


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