Metagenome / Metatranscriptome Family F058325

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F058325
Family Type	Metagenome / Metatranscriptome
Number of Sequences	135
Average Sequence Length	46 residues
Representative Sequence	MSRTSPAPTPAETESAARARRRAQEAVQEAMDRRDNGGDGATITDN
Number of Associated Samples	70
Number of Associated Scaffolds	135

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.48 %
% of genes near scaffold ends (potentially truncated)	23.70 %
% of genes from short scaffolds (< 2000 bps)	75.56 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.111 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (18.518 % of family members)
Environment Ontology (ENVO)	Unclassified (41.481 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.704 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.14% β-sheet: 0.00% Coil/Unstructured: 64.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 135 Family Scaffolds
PF01063	Aminotran_4	26.67
PF00456	Transketolase_N	2.22
PF08940	DUF1918	1.48
PF01965	DJ-1_PfpI	1.48
PF14789	THDPS_M	1.48
PF09339	HTH_IclR	0.74
PF13374	TPR_10	0.74
PF01810	LysE	0.74
PF02311	AraC_binding	0.74
PF01614	IclR	0.74
PF02776	TPP_enzyme_N	0.74
PF00296	Bac_luciferase	0.74
PF08028	Acyl-CoA_dh_2	0.74
PF00330	Aconitase	0.74
PF02384	N6_Mtase	0.74
PF02780	Transketolase_C	0.74

COG ID	Name	Functional Category	% Frequency in 135 Family Scaffolds
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	53.33
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	2.22
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	2.22
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.74
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.74
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.74

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.11 %
All Organisms	root	All Organisms	48.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.11 %
cellular organisms	root	All Organisms → cellular organisms	48.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.11 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.11 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	40.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.11 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.63 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.11 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	17.78 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.22 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.11 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	17.78 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.22 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.11 %
Actinoalloteichus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus	17.78 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.22 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.11 %
unclassified Actinoalloteichus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus	17.78 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.22 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.11 %
Actinoalloteichus sp. GBA129-24	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	17.78 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.22 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10294789	Not Available	660	Open in IMG/M
3300004091\|Ga0062387_100135405	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300005332\|Ga0066388_102437232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	950	Open in IMG/M
3300005332\|Ga0066388_104364157	Not Available	721	Open in IMG/M
3300005602\|Ga0070762_10818804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	631	Open in IMG/M
3300005602\|Ga0070762_10983556	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300005602\|Ga0070762_10991580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	576	Open in IMG/M
3300005610\|Ga0070763_10145379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1234	Open in IMG/M
3300005610\|Ga0070763_10167636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1156	Open in IMG/M
3300005712\|Ga0070764_10003723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	7085	Open in IMG/M
3300005764\|Ga0066903_100010030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8990	Open in IMG/M
3300006028\|Ga0070717_10038321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3896	Open in IMG/M
3300006176\|Ga0070765_100010107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	6547	Open in IMG/M
3300006176\|Ga0070765_100915676	Not Available	829	Open in IMG/M
3300009826\|Ga0123355_10023563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9887	Open in IMG/M
3300009826\|Ga0123355_10430341	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300010043\|Ga0126380_10200222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	1336	Open in IMG/M
3300010043\|Ga0126380_11989114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	531	Open in IMG/M
3300010046\|Ga0126384_10526893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	1023	Open in IMG/M
3300010048\|Ga0126373_10001256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17832	Open in IMG/M
3300010048\|Ga0126373_10002286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14092	Open in IMG/M
3300010048\|Ga0126373_10040909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4076	Open in IMG/M
3300010048\|Ga0126373_10160768	All Organisms → cellular organisms → Bacteria	2144	Open in IMG/M
3300010048\|Ga0126373_10280546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1653	Open in IMG/M
3300010048\|Ga0126373_10346975	All Organisms → cellular organisms → Bacteria	1495	Open in IMG/M
3300010048\|Ga0126373_10655861	Not Available	1105	Open in IMG/M
3300010048\|Ga0126373_11922846	Not Available	654	Open in IMG/M
3300010361\|Ga0126378_10021125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5626	Open in IMG/M
3300010361\|Ga0126378_11051987	Not Available	916	Open in IMG/M
3300010361\|Ga0126378_11661360	Not Available	726	Open in IMG/M
3300010361\|Ga0126378_13433370	Not Available	503	Open in IMG/M
3300010376\|Ga0126381_100524281	Not Available	1675	Open in IMG/M
3300010376\|Ga0126381_100668939	Not Available	1483	Open in IMG/M
3300010376\|Ga0126381_101787113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	887	Open in IMG/M
3300010376\|Ga0126381_102116763	Not Available	810	Open in IMG/M
3300010376\|Ga0126381_104682895	Not Available	527	Open in IMG/M
3300010379\|Ga0136449_100019123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17669	Open in IMG/M
3300016422\|Ga0182039_11434761	Not Available	627	Open in IMG/M
3300017822\|Ga0187802_10083312	Not Available	1194	Open in IMG/M
3300017926\|Ga0187807_1130421	Not Available	798	Open in IMG/M
3300017926\|Ga0187807_1179957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	681	Open in IMG/M
3300017926\|Ga0187807_1291123	Not Available	541	Open in IMG/M
3300017928\|Ga0187806_1041708	Not Available	1381	Open in IMG/M
3300017928\|Ga0187806_1230245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	636	Open in IMG/M
3300017928\|Ga0187806_1238029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	627	Open in IMG/M
3300017932\|Ga0187814_10041332	Not Available	1703	Open in IMG/M
3300017932\|Ga0187814_10223121	Not Available	711	Open in IMG/M
3300017932\|Ga0187814_10412195	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300017942\|Ga0187808_10089864	Not Available	1329	Open in IMG/M
3300017942\|Ga0187808_10290083	Not Available	736	Open in IMG/M
3300017946\|Ga0187879_10618920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	602	Open in IMG/M
3300017970\|Ga0187783_10001221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18971	Open in IMG/M
3300017970\|Ga0187783_10002710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13148	Open in IMG/M
3300017970\|Ga0187783_10012441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6261	Open in IMG/M
3300017970\|Ga0187783_10320789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1129	Open in IMG/M
3300017970\|Ga0187783_10470612	Not Available	911	Open in IMG/M
3300017970\|Ga0187783_10786820	Not Available	686	Open in IMG/M
3300017970\|Ga0187783_10859459	Not Available	654	Open in IMG/M
3300017972\|Ga0187781_10318127	Not Available	1105	Open in IMG/M
3300017972\|Ga0187781_10438518	Not Available	934	Open in IMG/M
3300017972\|Ga0187781_11155794	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300017995\|Ga0187816_10293297	Not Available	713	Open in IMG/M
3300017995\|Ga0187816_10519924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	537	Open in IMG/M
3300018007\|Ga0187805_10206975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	896	Open in IMG/M
3300018025\|Ga0187885_10461883	Not Available	567	Open in IMG/M
3300018060\|Ga0187765_10110329	Not Available	1510	Open in IMG/M
3300018062\|Ga0187784_10009908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	7679	Open in IMG/M
3300018062\|Ga0187784_10773118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	767	Open in IMG/M
3300020150\|Ga0187768_1104469	Not Available	646	Open in IMG/M
3300020582\|Ga0210395_10072747	Not Available	2529	Open in IMG/M
3300020582\|Ga0210395_10169139	Not Available	1635	Open in IMG/M
3300020582\|Ga0210395_10580562	Not Available	842	Open in IMG/M
3300020583\|Ga0210401_10009448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9598	Open in IMG/M
3300021180\|Ga0210396_10475957	Not Available	1094	Open in IMG/M
3300021181\|Ga0210388_10094779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2550	Open in IMG/M
3300021402\|Ga0210385_11304942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	556	Open in IMG/M
3300021403\|Ga0210397_10042376	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2889	Open in IMG/M
3300021403\|Ga0210397_10734295	Not Available	760	Open in IMG/M
3300021404\|Ga0210389_10829027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	722	Open in IMG/M
3300021433\|Ga0210391_10067225	Not Available	2839	Open in IMG/M
3300021433\|Ga0210391_10593186	Not Available	870	Open in IMG/M
3300021474\|Ga0210390_10378840	Not Available	1196	Open in IMG/M
3300021475\|Ga0210392_10323126	Not Available	1111	Open in IMG/M
3300021478\|Ga0210402_10049187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3683	Open in IMG/M
3300021560\|Ga0126371_10002454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15962	Open in IMG/M
3300021560\|Ga0126371_10013091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7526	Open in IMG/M
3300021560\|Ga0126371_10822120	Not Available	1075	Open in IMG/M
3300021560\|Ga0126371_11319745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	854	Open in IMG/M
3300021560\|Ga0126371_11501237	Not Available	802	Open in IMG/M
3300022533\|Ga0242662_10292425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	541	Open in IMG/M
3300022709\|Ga0222756_1021417	Not Available	831	Open in IMG/M
3300027879\|Ga0209169_10014323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4356	Open in IMG/M
3300027884\|Ga0209275_10099697	Not Available	1485	Open in IMG/M
3300027884\|Ga0209275_10900362	Not Available	510	Open in IMG/M
3300027895\|Ga0209624_10158209	Not Available	1498	Open in IMG/M
3300027908\|Ga0209006_10005999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11030	Open in IMG/M
3300027908\|Ga0209006_10015318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6942	Open in IMG/M
3300028877\|Ga0302235_10224690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	822	Open in IMG/M
3300028906\|Ga0308309_11803311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	517	Open in IMG/M
3300028906\|Ga0308309_11858045	Not Available	509	Open in IMG/M
3300029701\|Ga0222748_1067079	Not Available	646	Open in IMG/M
3300030056\|Ga0302181_10241054	Not Available	822	Open in IMG/M
3300030730\|Ga0307482_1093914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	810	Open in IMG/M
3300030862\|Ga0265753_1070925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	658	Open in IMG/M
3300030969\|Ga0075394_11746256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	690	Open in IMG/M
3300031231\|Ga0170824_111884417	Not Available	1467	Open in IMG/M
3300031231\|Ga0170824_111926651	Not Available	509	Open in IMG/M
3300031231\|Ga0170824_120184309	Not Available	523	Open in IMG/M
3300031446\|Ga0170820_11834508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	638	Open in IMG/M
3300031474\|Ga0170818_103803683	Not Available	577	Open in IMG/M
3300031708\|Ga0310686_103200039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	530	Open in IMG/M
3300031708\|Ga0310686_112794719	Not Available	1133	Open in IMG/M
3300031708\|Ga0310686_117657126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinoalloteichus → unclassified Actinoalloteichus → Actinoalloteichus sp. GBA129-24	1377	Open in IMG/M
3300031720\|Ga0307469_12101531	Not Available	549	Open in IMG/M
3300031823\|Ga0307478_10831715	Not Available	773	Open in IMG/M
3300032160\|Ga0311301_10126399	All Organisms → cellular organisms → Bacteria	4781	Open in IMG/M
3300032174\|Ga0307470_10812178	Not Available	726	Open in IMG/M
3300032261\|Ga0306920_104379700	Not Available	506	Open in IMG/M
3300032783\|Ga0335079_10454059	Not Available	1373	Open in IMG/M
3300032895\|Ga0335074_10072207	All Organisms → cellular organisms → Bacteria	4654	Open in IMG/M
3300032895\|Ga0335074_10115276	Not Available	3498	Open in IMG/M
3300032895\|Ga0335074_10392398	Not Available	1512	Open in IMG/M
3300032895\|Ga0335074_10415831	Not Available	1448	Open in IMG/M
3300032895\|Ga0335074_10686857	Not Available	991	Open in IMG/M
3300032896\|Ga0335075_10008239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16008	Open in IMG/M
3300032896\|Ga0335075_10104612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3691	Open in IMG/M
3300032896\|Ga0335075_10232439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2151	Open in IMG/M
3300032896\|Ga0335075_10247168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2060	Open in IMG/M
3300032896\|Ga0335075_10376187	Not Available	1527	Open in IMG/M
3300032896\|Ga0335075_10529854	Not Available	1192	Open in IMG/M
3300032896\|Ga0335075_10996942	Not Available	752	Open in IMG/M
3300032896\|Ga0335075_11222805	Not Available	649	Open in IMG/M
3300032898\|Ga0335072_10894267	Not Available	832	Open in IMG/M
3300033134\|Ga0335073_11055412	Not Available	834	Open in IMG/M
3300033134\|Ga0335073_11286402	Not Available	725	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.52%
Host-Associated	Host-Associated	1.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.19%
Aquatic	Environmental → Aquatic	13.33%
Arthropoda	Host-Associated → Arthropoda	1.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.70%
Freshwater	Environmental → Aquatic → Freshwater	13.33%
Peat	Environmental → Terrestrial → Peat	1.48%
Digestive System	Host-Associated → Arthropoda → Digestive System	1.48%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.19%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	22.96%
Loam	Environmental → Terrestrial → Soil → Loam	15.56%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.48%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	1.48%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.22%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	22.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	11.11%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.22%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.48%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	1.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.74%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.07%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	12.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	11.11%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	10.37%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.48%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.48%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.48%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	1.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_102947891	3300003505	Forest Soil	MSTTKTKAETESQARARRWAQEAVQEAMDRRDNGGDAATATDN*
Ga0062387_1001354051	3300004091	Bog Forest Soil	MTRNRPAPTPAETESAARARRRAQEAVQEAMDRRDNGGNGATITEN*
Ga0066388_1024372321	3300005332	Tropical Forest Soil	MSRTQSAAVTVEAESDMHTRRRAQEAVQEAMDRRDNGGDSAATDN*
Ga0066388_1043641572	3300005332	Tropical Forest Soil	MSRANPTVEPAMTESEARARRRAQEAVQEAMDRRDNGGDGATATNN*
Ga0070762_108188042	3300005602	Soil	MSRTSPAPTPAETESAARARRRAQEAVQEAMDRRDNGGDGATITDN*
Ga0070762_109835561	3300005602	Soil	MSRTRPAQTQAESENQARARRHAQEAVQEAMDRRDNGGDAATATDN*
Ga0070762_109915801	3300005602	Soil	NGPARRSQMQATRSNPTPAETESQARARQRAQEAVQEAMDRRDNGGDGATATDH*
Ga0070763_101453792	3300005610	Soil	MTSNRPAQTPAEIESDARARRRAQEAVQEAMDRRDNGGDGATITDN*
Ga0070763_101676362	3300005610	Soil	MSRTSQAPTPAETESAARARRRAQEAVQEAMDRRDNGGDSVTITDN*
Ga0070764_100037234	3300005712	Soil	MSRTRPAQTAAETESQNRARRYAQEAVQEAMDRRDNGGDAATATDN*
Ga0066903_10001003010	3300005764	Tropical Forest Soil	MLRTQSVAAAVEAESEVHSRRRALEAVQEAMDRRDNGGDSAATDN*
Ga0070717_100383212	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSRTRPSPTSAEAESQARARRWAQEAVQEAMDRRDNGGDAATATDN*
Ga0070765_1000101077	3300006176	Soil	MSRTSPAPTPAETESAARARRRAQEAVQEAMDRRDNGGDGATITDK*
Ga0070765_1009156762	3300006176	Soil	MTSNRPAQTPAEIESDARARRRAQEAVQEAMDRRDNGGDGATITD
Ga0123355_100235633	3300009826	Termite Gut	MPRTQSAPAVAEAESEIHTRRRAQEAVQEAMDRRDNGGDGAASDNN*
Ga0123355_104303412	3300009826	Termite Gut	MSRTQSAPAVAEAESDVHTRRRAQEAVQEAMDRRDNGGDGAAGDNI*
Ga0126380_102002222	3300010043	Tropical Forest Soil	MSRTKPSPTPAEKESQARTRRWAQEAVQEAMDRRDNGGDAATATEN*
Ga0126380_119891141	3300010043	Tropical Forest Soil	PARRSPEMLRTQSAPVAVEAESEMHTRRRAQEAVQEAMDRRDNGGDSAATDN*
Ga0126384_105268932	3300010046	Tropical Forest Soil	MSRANPTAEPAMTESEARARRRAQEAVQEAMDRRDNGGDGATATNN*
Ga0126373_100012561	3300010048	Tropical Forest Soil	MSRTSRTPTSAETESAARARRRAQEAVQEAMDRRDNGGDSVTITDN*
Ga0126373_1000228613	3300010048	Tropical Forest Soil	MSRTTHAPTPAETESAARARRRAQEAVQEAMDRRDNGGDSVTITDN*
Ga0126373_100409094	3300010048	Tropical Forest Soil	MLRTRMTPTPVETETQARARRRALKAVQEAMDRRDNGGDAATATDN*
Ga0126373_101607681	3300010048	Tropical Forest Soil	MSRTSQATMAATTESDACARQRGQEAVQEAMDRRDNGGDGATATDN*
Ga0126373_102805462	3300010048	Tropical Forest Soil	MSRTSQAPPAPDTDSAARARRRAQEAVQEAMDRRDNGGDGATITDN*
Ga0126373_103469752	3300010048	Tropical Forest Soil	MSSTSQTATAATTESEARARQRAQEAVQEAMDRRDNGGDGATATDN*
Ga0126373_106558611	3300010048	Tropical Forest Soil	MSRTSQAHTQAETESAANARRRAQEAVQEAMDRRDHGGDSVTITDN*
Ga0126373_119228461	3300010048	Tropical Forest Soil	MSRKQSAAASVEVESEMHTRRRAQEAVQEAMDRRDNGGDSAATDS*
Ga0126378_100211257	3300010361	Tropical Forest Soil	MSRTQSVPTAVEAESEVHTRRRAQEAVQEAMDRRDNGGDSAADN*
Ga0126378_110519871	3300010361	Tropical Forest Soil	KATAGRTQMSRTSQADTQAETESAANARRRAQEAVQEAMDRRDHGGDSVTITDN*
Ga0126378_116613601	3300010361	Tropical Forest Soil	MSRTRQAPPTPDTDSAARARRRAQEAVQEAMDRRDNGGDGATITDN*
Ga0126378_134333701	3300010361	Tropical Forest Soil	MSRTSQAHTQAETESAANARRRAQEAVQEAMDRRDHGGDS
Ga0126381_1005242811	3300010376	Tropical Forest Soil	MSRTSQTATAATTETEARARQRAQEAVQEAMDRRDNGGDGATATDN*
Ga0126381_1006689392	3300010376	Tropical Forest Soil	MSRTSQAPPAPDTDSAALARRRAQEAVQEAMDRRDNGGDGATITDN*
Ga0126381_1017871132	3300010376	Tropical Forest Soil	MFRTQATRTAAEADAEAHTRRRAQEAVQEAMDRRDNGGDSAAADN*
Ga0126381_1021167632	3300010376	Tropical Forest Soil	MSRTRQAPPTPDTDSAARARRRAQEAVQEAMDRRDN
Ga0126381_1046828952	3300010376	Tropical Forest Soil	MSRKQSTPAAVEVESEMHTRRRAQEAVQEAMDRRDNGGDSAATDN*
Ga0136449_1000191232	3300010379	Peatlands Soil	MSRTTQTQTPTETESAARARRRAQEAVQEAMDRRDNGGDGATVTDN*
Ga0182039_114347611	3300016422	Soil	MSRANPTAEPAMSESEARARRRAQEAVQEAMDRRDNGGDGANATDN
Ga0187802_100833122	3300017822	Freshwater Sediment	MSRTQSAPTAAEAESEARRRAQEAVQEAMDRRDNGGDSATATNNYS
Ga0187807_11304211	3300017926	Freshwater Sediment	MSRTQSATVAVEAESEVHTRRRAQEAVQEAMDRRDNGGDSAATDN
Ga0187807_11799571	3300017926	Freshwater Sediment	MYRTSPTTTPVMTESEARARRRAQEAVQEAMDRRDNGGDGATATDN
Ga0187807_12911232	3300017926	Freshwater Sediment	MSRTQSSVVAETESQRARRRAQEAVQEAMDRRDNGGDGATATDTCN
Ga0187806_10417082	3300017928	Freshwater Sediment	MSRTQSAPAAAEAESDVRTRRRAQEAVQEAMDRRDNGGDSAATDN
Ga0187806_12302451	3300017928	Freshwater Sediment	RTSPTTTPVMTESEARARRRAQEAVQEAMDRRDNGGDGATATDN
Ga0187806_12380292	3300017928	Freshwater Sediment	MSRTSQAQTPAETESAARARRRAQAAVQEAMDRRDNGGDSVTITDN
Ga0187814_100413321	3300017932	Freshwater Sediment	MSRTSPTTTPVMTESEARARRRAQEAVQEAMDRRDNGGDGATATDN
Ga0187814_102231211	3300017932	Freshwater Sediment	MSRTQSAPAAAEAESDVRTRRRAQEAVQEAMDRRDNGGD
Ga0187814_104121951	3300017932	Freshwater Sediment	PDMSRTQSATVAVEAESEVHTRRRAQEAVQEAMDRRDNGGDSAATDN
Ga0187808_100898642	3300017942	Freshwater Sediment	MSRTSQTATAATTESEACARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0187808_102900832	3300017942	Freshwater Sediment	MSRTRPAQSPADAEMQARARQRAQEAVQEAMDRRDNGGDAAAATDD
Ga0187879_106189201	3300017946	Peatland	TFCREERPQMSRTSQTAAPAMTESEARARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0187783_1000122113	3300017970	Tropical Peatland	MSRTQPGPAAEAESLNARRRAQEAVQEAMDRRDNGGDSATATDAYN
Ga0187783_100027109	3300017970	Tropical Peatland	MSRTQSSATEAESQNARRRAQEAVQEAMDRRDNGGDGATATDPYN
Ga0187783_100124412	3300017970	Tropical Peatland	MTRPKPSPRQAETESQVRARQRGQEAVQEAMDRRDNGGDAATATDN
Ga0187783_103207892	3300017970	Tropical Peatland	MTRTKPSHSTAETESQARARQRGQEAVQEAMDRRDNGGDAATATDN
Ga0187783_104706122	3300017970	Tropical Peatland	MSRAQSSPAAEAESQSTRRRAQEAVQEAMDRRDNGGDGATATDPYN
Ga0187783_107868201	3300017970	Tropical Peatland	MTRTKTSPNRAETESQARARQRGQEAVQEAMDRRDNGGDAATATDN
Ga0187783_108594591	3300017970	Tropical Peatland	MTRTKPTASRAETESQARARQRGQEAVQEAMDRRDNGGDAATATDN
Ga0187781_103181272	3300017972	Tropical Peatland	MSRTQSSATEAESHYARRRAQEAVQEAMDRRDNGGDGATATDTHY
Ga0187781_104385182	3300017972	Tropical Peatland	MTRTKPRRSPAETETQARARQRGQEAVQEAMDRRDNGGDAATATDS
Ga0187781_111557943	3300017972	Tropical Peatland	TLRLLRRTAMTRPKPSPRQAETESQVRARQRGQEAVQEAMDRRDNGGDAATATDS
Ga0187816_102932972	3300017995	Freshwater Sediment	MSRTQSATVAVEAESEVHTRRRAQEAVQEAMDRRDNGGDSAAADSN
Ga0187816_105199242	3300017995	Freshwater Sediment	PRGEPQMTRTRPAPTPAETESAARARRRAQEAVQEAMDRRDNGGDSVTITDN
Ga0187805_102069752	3300018007	Freshwater Sediment	MSRTHTVPAAAEAESEAHTRRRAQEAVQEAMDRRDNGGDSATTADS
Ga0187885_104618831	3300018025	Peatland	MSRTSQTAAPAMTESEARARQRAQEAVQEAIDRRDNGGDGATATDN
Ga0187765_101103291	3300018060	Tropical Peatland	MSRANPAAEQAMTESEARARRRAQEAVQEAMDRRDNGGDGATATSN
Ga0187784_100099081	3300018062	Tropical Peatland	RTQSSATEAESLYARRRAQEAVQEAMDRRDNGGDGATATDTHY
Ga0187784_107731182	3300018062	Tropical Peatland	MTRSKPSQRPAETESQVRARQRGQEAVQEAMDRRDNGGDAATATDS
Ga0187768_11044691	3300020150	Tropical Peatland	MSRTQSAPTAAEAESEARRRAQEAVQKAMDRRDNGGDSATATDNYS
Ga0210395_100727472	3300020582	Soil	MSTTKTKAETESQARARRWAQEAVQEAMDRRDNGGDAATATDN
Ga0210395_101691391	3300020582	Soil	MTRTRPAPTPAETESEARARRRAQEAVQEAMDRRDNGGDGATITDN
Ga0210395_105805622	3300020582	Soil	PAQTPAEIESDARARRRAQEAVQEAMDRRDNGGDGATITDN
Ga0210401_100094489	3300020583	Soil	MSRTSQTTTAATTESEARARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0210396_104759572	3300021180	Soil	MTSNRPAQTPAEIESDARARRRAQEAVQEAMDRRDNGGDGATITDN
Ga0210388_100947792	3300021181	Soil	MSRTVQAPAETEASARARRRAQEAVQEAMDRRDNGGDAATATEN
Ga0210385_113049422	3300021402	Soil	TSRTRASPKAADTESQARARRWAQEAVQEAMDRRDNGGDAATATDN
Ga0210397_100423762	3300021403	Soil	MSRTKASPTAAETESQARARRWAQEAVQEAMDRRDNGGDAATATEN
Ga0210397_107342951	3300021403	Soil	GETEMSRTKASPTAAETESQARARRWAQEAVQEAMDRRDNGGDAATATDN
Ga0210389_108290271	3300021404	Soil	MSRTMQAPAETEASARARRRAQEAVQEAMDRRDNGGDAATATEN
Ga0210391_100672253	3300021433	Soil	MSMTRHNQTPAENEAQARIRRRAQEAVQEAMDRRDNGGDGATATEN
Ga0210391_105931862	3300021433	Soil	PTPAETESQDRARRYAQEAVQEAMDRRDNGGDAATATDN
Ga0210390_103788401	3300021474	Soil	MTSNRPAQTPAEIESDARARRRAQEAVQEAMDRRDN
Ga0210392_103231261	3300021475	Soil	PTPAETESEARARRRAQEAVQEAMDRRDNGGDGATITDN
Ga0210402_100491874	3300021478	Soil	MSRTSRATTTAESESAADARRRAQEAVQEAMDRRDNGGDSVTITDN
Ga0126371_100024548	3300021560	Tropical Forest Soil	MLRTQSVAAAVEAESEVHSRRRALEAVQEAMDRRDNGGDSAATDN
Ga0126371_100130912	3300021560	Tropical Forest Soil	MLRTRMTPTPVETETQARARRRALKAVQEAMDRRDNGGDAATATDN
Ga0126371_108221201	3300021560	Tropical Forest Soil	MSRTKPSPTPAEKESQARTRRWAQEAVQEAMDRRDKGGDAATATEN
Ga0126371_113197452	3300021560	Tropical Forest Soil	MLRTQSVGVAAEAESEMHTRRRAQEAVQEAMDRRDNGGDGAASDNS
Ga0126371_115012371	3300021560	Tropical Forest Soil	MSRTSQAHTQAETESAANARRRAQEAVQEAMDRRDHGGDSVTITDN
Ga0242662_102924251	3300022533	Soil	TSRATTTAESESAADARRRAQEAVQEAMDRRDNGGDSVTITDN
Ga0222756_10214171	3300022709	Soil	SNRPAQTPAEIESDARARRRAQEAVQEAMDRRDNGGDGATITDN
Ga0209169_100143233	3300027879	Soil	MSRTRPAQTAAETESQNRARRYAQEAVQEAMDRRDNGGDAATATDN
Ga0209275_100996972	3300027884	Soil	MSRTRPAQTQAESENQARARRHAQEAVQEAMDRRDNGGDAATATDN
Ga0209275_109003621	3300027884	Soil	MSRTSPAPTPAETESAARARRRAQEAVQEAMDRRDNGGD
Ga0209624_101582092	3300027895	Forest Soil	MPATRSNPTPAETESQARARQRGQEAVQEAMDRRDNGGDGATATDH
Ga0209006_1000599911	3300027908	Forest Soil	MFRTKASPTAAETESQARARRWAQEAVQEAMDRRDNGGDAATATDN
Ga0209006_100153184	3300027908	Forest Soil	MTRSKPNPTPAEADSQARTRRWAQEAVQEAMDRRDNGGDAATATDN
Ga0302235_102246902	3300028877	Palsa	MSRTSQTAAPAMTESEASARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0308309_118033111	3300028906	Soil	RRPKMSRTRPAQTAAETESQNRARRYAQEAVQEAMDRRDNGGDAATATDN
Ga0308309_118580452	3300028906	Soil	MSRTKPSPTPADTENQARTRRWAQEAVQEAMDRRDNGGDAATATEN
Ga0222748_10670791	3300029701	Soil	HAMRGEPQMTSNRPAQTPAEIESDARARRRAQEAVQEAMDRRDNGGDGATITDN
Ga0302181_102410541	3300030056	Palsa	MSRTSQTAAPAMTESEARARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0307482_10939142	3300030730	Hardwood Forest Soil	MSRANQTAEPAMTESEARARRRAQEAVQEAMDRRDNGGDGATTTDN
Ga0265753_10709251	3300030862	Soil	MTRTRPAPTPAETESDARARRRAQEAVQEAMDRRDNGGDGAAMLNK
Ga0075394_117462561	3300030969	Soil	MSRANPAAEPAMTESEARARRRAQEAVQEAMDRRDNGGDGATATDN
Ga0170824_1118844172	3300031231	Forest Soil	MSRTIQAPAQAEAESAARARRRAQEAVQEAMDRRDNGGDAATATDN
Ga0170824_1119266511	3300031231	Forest Soil	MSRTSQTTTAATTESEACARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0170824_1201843091	3300031231	Forest Soil	MSRANPAAEPAMTESEARASRRAQEAVQEAMDRRDNGGDGATATNN
Ga0170820_118345082	3300031446	Forest Soil	MSRTIQAPAQAETESAARARRRAQEAVQEAMDRRDNGGDAATATDN
Ga0170818_1038036831	3300031474	Forest Soil	MSRANPAAEPAMTESEARASRRAQEAVQEAMDRRDNGGDGATATDS
Ga0310686_1032000391	3300031708	Soil	EALDVPARRTAMSRTSPARKSAETESAARARQRAQAAVQEAMDRRDNGGDGATATEN
Ga0310686_1127947191	3300031708	Soil	MSRTSQAPTPAETESAARARRRAQEAVQEAMDRRDNGGDSVTITDN
Ga0310686_1176571262	3300031708	Soil	MSRTKPTTTPAETESAARARRRAQQAVQEAMDRRDNGGDGATATDN
Ga0307469_121015311	3300031720	Hardwood Forest Soil	MSRTRPNPTPAEAESQARTRRWAQEAVQEAMDRRDNGGDAATATDN
Ga0307478_108317151	3300031823	Hardwood Forest Soil	MSRTSQTATAATTESEARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0311301_101263992	3300032160	Peatlands Soil	MSRTTQTQTPTETESAARARRRAQEAVQEAMDRRDNGGDGATVTDN
Ga0307470_108121781	3300032174	Hardwood Forest Soil	MSRTSQTATAATTESEARVRQRALEAVQEAMDRRDNGGDRATATDN
Ga0306920_1043797002	3300032261	Soil	RGEPQMSRANPTAEPAMSESEARARRRAQEAVQEAMDRRDNGGDGANATDN
Ga0335079_104540592	3300032783	Soil	MSRTKPSPTPAEAESQARTRRWAQEAVQEAMDRRDNGGDAAMATDS
Ga0335074_100722075	3300032895	Soil	MSRTSQTATAAITESEACARQRAQEAVQEAMDRRDNGGDGATATEN
Ga0335074_101152761	3300032895	Soil	MSRTSQTATAATTESEARARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0335074_103923981	3300032895	Soil	RTSQTATAATTESDARARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0335074_104158312	3300032895	Soil	MSRTKHSPAETDTQARARQRALEAVQEAMDRRDNGGDAAAATEN
Ga0335074_106868571	3300032895	Soil	MPSTTTSPTPARTEPDDRARRRAQEAVQEALDRRDNGGDGITDTDS
Ga0335075_100082392	3300032896	Soil	MSRTSRTTTAATTESEACARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0335075_101046122	3300032896	Soil	MSRTSQTVTAATTESEACARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0335075_102324393	3300032896	Soil	MSRTGQATSAATRDSDTHARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0335075_102471683	3300032896	Soil	TSQNAYAARAESEARARQRAQEAVQEAMDRRDNGGDGATATDS
Ga0335075_103761871	3300032896	Soil	MSSTSQNTYAARAESEARARQRAQEAVQEAMDRRDNGGDGATATDS
Ga0335075_105298542	3300032896	Soil	SQTATAATTESEARQRAQEAVQEAMDRRDNGGDGATATDN
Ga0335075_109969422	3300032896	Soil	HSPAETDTQARARQRALEAVQEAMDRRDNGGDAAAATEN
Ga0335075_112228051	3300032896	Soil	VPREEETAMSRTKHSPAETDTQARARQRALEAVQEAMDRRDNGGDAAAATEN
Ga0335072_108942671	3300032898	Soil	MSRANPAAEPAMTESEARARRRAQEAVQEAMDRRDNGGDGATATSN
Ga0335073_110554121	3300033134	Soil	MQATRSNPTPAETDSQARARQRAQEAVQEAMDRRDNGGDGATATDH
Ga0335073_112864022	3300033134	Soil	MSRTPTVVPVASEPDNATRRRAQKAVQEAMDRRDNGGDGATETDN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F058325

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences