NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F057723

Metagenome / Metatranscriptome Family F057723

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F057723
Family Type Metagenome / Metatranscriptome
Number of Sequences 136
Average Sequence Length 71 residues
Representative Sequence MRPMRRSLCVFSFLLVLLSAASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFT
Number of Associated Samples 110
Number of Associated Scaffolds 136

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 94.85 %
% of genes near scaffold ends (potentially truncated) 94.85 %
% of genes from short scaffolds (< 2000 bps) 94.85 %
Associated GOLD sequencing projects 102
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (98.529 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(27.206 % of family members)
Environment Ontology (ENVO) Unclassified
(34.559 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 59.18%    β-sheet: 0.00%    Coil/Unstructured: 40.82%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 136 Family Scaffolds
PF04072LCM 3.68
PF13432TPR_16 2.94
PF00854PTR2 2.21
PF13174TPR_6 2.21
PF13884Peptidase_S74 2.21
PF07721TPR_4 2.21
PF14366DUF4410 1.47
PF03459TOBE 1.47
PF00196GerE 0.74
PF09912DUF2141 0.74
PF01596Methyltransf_3 0.74
PF03681Obsolete Pfam Family 0.74
PF05598DUF772 0.74
PF13302Acetyltransf_3 0.74
PF028262-Hacid_dh_C 0.74
PF01740STAS 0.74
PF13414TPR_11 0.74
PF01551Peptidase_M23 0.74
PF13181TPR_8 0.74
PF00701DHDPS 0.74
PF13371TPR_9 0.74
PF07719TPR_2 0.74
PF02353CMAS 0.74
PF12697Abhydrolase_6 0.74
PF00561Abhydrolase_1 0.74

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 136 Family Scaffolds
COG3315O-Methyltransferase involved in polyketide biosynthesisSecondary metabolites biosynthesis, transport and catabolism [Q] 3.68
COG3104Dipeptide/tripeptide permeaseAmino acid transport and metabolism [E] 2.21
COG03294-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyaseCell wall/membrane/envelope biogenesis [M] 1.47
COG2226Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenGCoenzyme transport and metabolism [H] 0.74
COG22272-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylaseCoenzyme transport and metabolism [H] 0.74
COG2230Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferasesLipid transport and metabolism [I] 0.74
COG2518Protein-L-isoaspartate O-methyltransferasePosttranslational modification, protein turnover, chaperones [O] 0.74
COG4122tRNA 5-hydroxyU34 O-methylase TrmR/YrrMTranslation, ribosomal structure and biogenesis [J] 0.74
COG4123tRNA1(Val) A37 N6-methylase TrmN6Translation, ribosomal structure and biogenesis [J] 0.74

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms98.53 %
UnclassifiedrootN/A1.47 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2065487018|GPINP_F5MS3JC02F7VTWAll Organisms → cellular organisms → Bacteria527Open in IMG/M
3300000559|F14TC_101590640All Organisms → cellular organisms → Bacteria → Proteobacteria1906Open in IMG/M
3300000890|JGI11643J12802_12285326All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300000956|JGI10216J12902_109788688All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300001431|F14TB_100568926All Organisms → cellular organisms → Bacteria645Open in IMG/M
3300002911|JGI25390J43892_10083526All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300004479|Ga0062595_101297362All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300005166|Ga0066674_10311571All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300005172|Ga0066683_10375658All Organisms → cellular organisms → Bacteria881Open in IMG/M
3300005177|Ga0066690_10744554All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300005186|Ga0066676_10133331All Organisms → cellular organisms → Bacteria → Proteobacteria1545Open in IMG/M
3300005186|Ga0066676_10333085All Organisms → cellular organisms → Bacteria1011Open in IMG/M
3300005186|Ga0066676_11182410All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300005289|Ga0065704_10018306All Organisms → cellular organisms → Bacteria1626Open in IMG/M
3300005294|Ga0065705_10523041All Organisms → cellular organisms → Bacteria760Open in IMG/M
3300005295|Ga0065707_10004773All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium4268Open in IMG/M
3300005338|Ga0068868_100866690All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300005355|Ga0070671_101200478All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia668Open in IMG/M
3300005446|Ga0066686_10439257All Organisms → cellular organisms → Bacteria891Open in IMG/M
3300005446|Ga0066686_10824254All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300005454|Ga0066687_10201934All Organisms → cellular organisms → Bacteria1085Open in IMG/M
3300005471|Ga0070698_101672873All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300005536|Ga0070697_100441648All Organisms → cellular organisms → Bacteria1132Open in IMG/M
3300005549|Ga0070704_100278460All Organisms → cellular organisms → Bacteria1385Open in IMG/M
3300005555|Ga0066692_10315023All Organisms → cellular organisms → Bacteria992Open in IMG/M
3300005557|Ga0066704_10325997All Organisms → cellular organisms → Bacteria1034Open in IMG/M
3300005559|Ga0066700_10009368All Organisms → cellular organisms → Bacteria → Proteobacteria5004Open in IMG/M
3300005574|Ga0066694_10362259All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300005598|Ga0066706_10220093All Organisms → cellular organisms → Bacteria1466Open in IMG/M
3300005617|Ga0068859_100070728All Organisms → cellular organisms → Bacteria3525Open in IMG/M
3300005618|Ga0068864_102264253All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium550Open in IMG/M
3300005937|Ga0081455_10242926All Organisms → cellular organisms → Bacteria1322Open in IMG/M
3300006031|Ga0066651_10389098All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300006031|Ga0066651_10393548All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300006031|Ga0066651_10634649All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300006034|Ga0066656_11069045All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300006163|Ga0070715_10066163All Organisms → cellular organisms → Bacteria1602Open in IMG/M
3300006163|Ga0070715_10335526All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300006172|Ga0075018_10072433All Organisms → cellular organisms → Bacteria1480Open in IMG/M
3300006175|Ga0070712_100261232All Organisms → cellular organisms → Bacteria1387Open in IMG/M
3300006791|Ga0066653_10340356All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium758Open in IMG/M
3300006791|Ga0066653_10366983All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300006796|Ga0066665_11672839All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300006845|Ga0075421_102339913All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300006852|Ga0075433_11623075All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300006880|Ga0075429_100289676All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia1434Open in IMG/M
3300009012|Ga0066710_101223761All Organisms → cellular organisms → Bacteria1164Open in IMG/M
3300009012|Ga0066710_103335420All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300009012|Ga0066710_104069608All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300009137|Ga0066709_102920728All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300009143|Ga0099792_10759848All Organisms → cellular organisms → Bacteria632Open in IMG/M
3300010323|Ga0134086_10169841All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300010323|Ga0134086_10469149All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300010376|Ga0126381_102405985Not Available755Open in IMG/M
3300012208|Ga0137376_10367367All Organisms → cellular organisms → Bacteria1249Open in IMG/M
3300012285|Ga0137370_10331065All Organisms → cellular organisms → Bacteria914Open in IMG/M
3300012285|Ga0137370_10630297All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300012356|Ga0137371_10611795All Organisms → cellular organisms → Bacteria836Open in IMG/M
3300012357|Ga0137384_10873093All Organisms → cellular organisms → Bacteria725Open in IMG/M
3300012930|Ga0137407_10315679All Organisms → cellular organisms → Bacteria1432Open in IMG/M
3300012957|Ga0164303_11213845All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300012958|Ga0164299_10342552All Organisms → cellular organisms → Bacteria937Open in IMG/M
3300012960|Ga0164301_10212687All Organisms → cellular organisms → Bacteria1242Open in IMG/M
3300012960|Ga0164301_10854362All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium702Open in IMG/M
3300012972|Ga0134077_10257551All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300012975|Ga0134110_10218963All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300012984|Ga0164309_10045113All Organisms → cellular organisms → Bacteria2520Open in IMG/M
3300012989|Ga0164305_11246952All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300013297|Ga0157378_12970687All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium526Open in IMG/M
3300015358|Ga0134089_10348667All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300015372|Ga0132256_101729777All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium734Open in IMG/M
3300015373|Ga0132257_102270908All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium703Open in IMG/M
3300015374|Ga0132255_104085838All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300016371|Ga0182034_10274457All Organisms → cellular organisms → Bacteria1340Open in IMG/M
3300018051|Ga0184620_10084047All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300018054|Ga0184621_10329947All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300018431|Ga0066655_10116317All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1527Open in IMG/M
3300018431|Ga0066655_10560668All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300018468|Ga0066662_12914949All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300019789|Ga0137408_1278385All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300019881|Ga0193707_1021304All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira2146Open in IMG/M
3300019883|Ga0193725_1015134All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira2150Open in IMG/M
3300019885|Ga0193747_1043123All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1124Open in IMG/M
3300019996|Ga0193693_1043082All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium747Open in IMG/M
3300020004|Ga0193755_1091088All Organisms → cellular organisms → Bacteria971Open in IMG/M
3300020018|Ga0193721_1109125All Organisms → cellular organisms → Bacteria704Open in IMG/M
3300020018|Ga0193721_1158954All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300021344|Ga0193719_10110646All Organisms → cellular organisms → Bacteria1194Open in IMG/M
3300021344|Ga0193719_10175000All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300021344|Ga0193719_10416157All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300021411|Ga0193709_1036033All Organisms → cellular organisms → Bacteria1180Open in IMG/M
3300021411|Ga0193709_1116898All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300021478|Ga0210402_10959057All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300022756|Ga0222622_10159788All Organisms → cellular organisms → Bacteria1461Open in IMG/M
3300022756|Ga0222622_10385147All Organisms → cellular organisms → Bacteria984Open in IMG/M
3300022756|Ga0222622_10576593All Organisms → cellular organisms → Bacteria810Open in IMG/M
3300022756|Ga0222622_11002817All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300022756|Ga0222622_11038354All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia602Open in IMG/M
3300025271|Ga0207666_1066196All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium580Open in IMG/M
3300025916|Ga0207663_11562002All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300025935|Ga0207709_10434586All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1011Open in IMG/M
3300026326|Ga0209801_1195858All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300026327|Ga0209266_1181877All Organisms → cellular organisms → Bacteria794Open in IMG/M
3300026334|Ga0209377_1001698All Organisms → cellular organisms → Bacteria14730Open in IMG/M
3300026342|Ga0209057_1050530Not Available1962Open in IMG/M
3300026377|Ga0257171_1063735All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300026528|Ga0209378_1241349All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300026537|Ga0209157_1302390All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300026540|Ga0209376_1201218All Organisms → cellular organisms → Bacteria905Open in IMG/M
3300026547|Ga0209156_10170071All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1050Open in IMG/M
3300026547|Ga0209156_10465634All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300026548|Ga0209161_10121675All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1543Open in IMG/M
3300026550|Ga0209474_10591518All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium567Open in IMG/M
3300026552|Ga0209577_10586723All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300027748|Ga0209689_1143734All Organisms → cellular organisms → Bacteria1162Open in IMG/M
3300027880|Ga0209481_10725120All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300028711|Ga0307293_10195933All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300028715|Ga0307313_10111367All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia835Open in IMG/M
3300028819|Ga0307296_10684458All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300028828|Ga0307312_10714322All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300028878|Ga0307278_10380287All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300030916|Ga0075386_12061401All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300031057|Ga0170834_106870170All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium581Open in IMG/M
3300031231|Ga0170824_114249324All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300031231|Ga0170824_119185246All Organisms → cellular organisms → Bacteria658Open in IMG/M
3300031446|Ga0170820_13630502All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300031446|Ga0170820_15344474All Organisms → cellular organisms → Bacteria849Open in IMG/M
3300031446|Ga0170820_16335770All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1806Open in IMG/M
3300031446|Ga0170820_16608289All Organisms → cellular organisms → Bacteria794Open in IMG/M
3300031474|Ga0170818_101189832All Organisms → cellular organisms → Bacteria658Open in IMG/M
3300031547|Ga0310887_10320630All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium889Open in IMG/M
3300031716|Ga0310813_11530278All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300031847|Ga0310907_10509052All Organisms → cellular organisms → Bacteria645Open in IMG/M
3300031941|Ga0310912_10345585All Organisms → cellular organisms → Bacteria → Proteobacteria1155Open in IMG/M
3300032205|Ga0307472_100197588All Organisms → cellular organisms → Bacteria1525Open in IMG/M
3300033551|Ga0247830_11398924All Organisms → cellular organisms → Bacteria559Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil27.21%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil17.65%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.88%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.88%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil5.88%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.15%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.68%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.94%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.21%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.47%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere1.47%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.47%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.47%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.47%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.74%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.74%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.74%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.74%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.74%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.74%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2065487018Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300002911Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cmEnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300019881Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2EnvironmentalOpen in IMG/M
3300019883Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2EnvironmentalOpen in IMG/M
3300019885Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2EnvironmentalOpen in IMG/M
3300019996Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300020018Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2EnvironmentalOpen in IMG/M
3300021344Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2EnvironmentalOpen in IMG/M
3300021411Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2EnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025271Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026327Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300026377Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-BEnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026537Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300030916Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPINP_025452602065487018SoilMRPMRRSLCVFSFLLLLLSAASVAQVGNTPRPVPTTRVIAVLGAMTLEIETLGQELTDKTEMTVQGIRFT
F14TC_10159064013300000559SoilMRPMRRSLCVLSFLLLPLSAASFAQVGNTPRPAPATRVTAILSAMTLEIETLGQELTDKKEMTIQGIRFTTGSLKD
JGI11643J12802_1228532623300000890SoilMRPMRRLFCVLSFLLLLLSAASVAQVGNTPRPAPTPRVIAVLSAMTLEIETLGQQLTDKTEMTVQGIGTESREMEKLDRV*
JGI10216J12902_10978868813300000956SoilMRPMLRSLCVFSFIMLLLSAVSVAQVGNTPRPAPTTGVIAVLSAMTLEVETLGQQLTDKAEMTVQ
F14TB_10056892613300001431SoilMRPMRRSLCVLSFLLLLLSAAGVAQVGNTPRPAPTTRVIAVLSAMTLEIETLGQQLTNKTEMTVQGIRFTTGSL
JGI25390J43892_1008352623300002911Grasslands SoilMRPMRRSLWVLSSLLLLLSAASVAQVGNIPRPAPTTRVIAVLSAMTLEIETLGEQLTDKTEMTVQGIRFTTG
Ga0062595_10129736213300004479SoilMRPMRRSLCVFSFLLLLLSAASVAQVGNTPRPVPTTRVIAVLGAMTLEIETLGQELTDKTEMTVQGIRFTTGSLK
Ga0066674_1031157113300005166SoilMRPMLRSLCVFSFILLLLSAVSVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKT
Ga0066683_1037565813300005172SoilMRRSLCVFSFLLLLLSAASVAQVGNIPRPTPTTRVIGILSAMTLEIETLGQELTDKAEMTVQGIRFTTGSLKDRR
Ga0066690_1074455413300005177SoilMTPMLRSLCVLFFLLVLLSAASVAQVGNIPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTAGSLKDRRVVLTHSGM
Ga0066676_1013333113300005186SoilMRPMRRSLCVFSFILLLLSAVSVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQG
Ga0066676_1033308513300005186SoilMRPMLRSLCVFSFILLLLSAVSVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQQLTDKTEMTVQGIRFTTG
Ga0066676_1118241013300005186SoilMRRSLCVFSFLLLLLLATSVAQVGNPPQPAPNTRVIAVLSAMTLEIETLGQQLTHKTEM
Ga0065704_1001830623300005289Switchgrass RhizosphereMRSMRRSLCVLSFLLLLLPAASVAQVGNTPRPAPTTRVIGVLSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKETERLCLPTREWEQ*
Ga0065705_1052304113300005294Switchgrass RhizosphereMRSMRRSFCVLSFLLLLRSAVSVAQVGNTPRPAPATRITAVLSAMTLEIEAIGQELTDKKEMTIQGIRFTTGSLKDRRVVLAHSG
Ga0065707_1000477333300005295Switchgrass RhizosphereMRSMRRSLCVLSFLLLLLPAASVAQVGNTPRPAPTTRVIGVLSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKETERLCLPTREWEK*
Ga0068868_10086669013300005338Miscanthus RhizosphereMRRSLCVFSFLLLLLSVASVAQVGITPRPAPTTRVIAVLSAMTLEIETLGQQLTDKTEMTVQGIRFTTGSLKDRKVV
Ga0070671_10120047823300005355Switchgrass RhizosphereMRPMRRALCVFFFLLLLLSAVSVAQVGNTPRPAPTRRVIGILSAMTLEIETLGQELTDKA
Ga0066686_1043925713300005446SoilMRPMLRSLCVLSFLLLLPSAASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSL
Ga0066686_1082425423300005446SoilMRTMLRSLCVFSFILLLLSAASVAQVGNTPRPAPTKRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLK
Ga0066687_1020193413300005454SoilMRRSLCVFSFLLLLLLATSVAQVGNPPQPAPNTRVIAVLSAMTLEIETLGQQLTHKTEMTVQGIRFTTGTLKDRRVVLTH
Ga0070698_10167287313300005471Corn, Switchgrass And Miscanthus RhizosphereMRPIRRSLCVFSFILLLLSVVSVAQVGNIPRPAPTTRIIGILSAMTLEIEALGQELTDKTEMTVQGIRFTTGSLKDR
Ga0070697_10044164813300005536Corn, Switchgrass And Miscanthus RhizosphereMRRSLCVLSFLLLLLSAASVAQVGNTPRPASATRVIAVLSAMTLEIETLGQQLTDKTEMTVQGIRFTTGSLKDRRVVL
Ga0070704_10027846023300005549Corn, Switchgrass And Miscanthus RhizosphereMTPMRRSLSVFSFLLVLLAAASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEVTVQGIRFTSGSLKDRK
Ga0066692_1031502323300005555SoilMRPMLRSLCVFSFVLLLLSTVSVAQMGNTPPPAPTTRVIGVLSAMTLEIETLGQELT
Ga0066704_1032599723300005557SoilMRLMLRSLCVFSFILLLLSAVSVAQVDNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRR
Ga0066700_1000936863300005559SoilMRLMLRSLCVFSFILLLLSAVSVAQVDNTPRPAPTTRVIGILSAMTLEIETLGQDLTDKTEMTVQGIRFTTGSLKDRKVVL
Ga0066694_1036225923300005574SoilMRPMLRSLCVFSFILLLLSAASVAQVGNTPRPAPTTRIIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRRVV
Ga0066706_1022009333300005598SoilMRTMLRSLCVFSFILLLLSAASVAQVGNTPRPAPTKRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRR
Ga0068859_10007072853300005617Switchgrass RhizosphereMRPMRRSLCVFSFLLLLLSVASVAQVGITPRPAPTTRVIAVLSAMTLEIETLGQQLTDKAEMTVQGIRFTTGSLK
Ga0068864_10226425313300005618Switchgrass RhizosphereMRRSLCVFSFLLLLLSVASVAQVGITPRPAPTTRVIAVLSAMTLEIETLGQQLTDKAEMTVQGIRFT
Ga0081455_1024292643300005937Tabebuia Heterophylla RhizosphereMRRSLCVFSFLLLLLSVASVAQVGITPRPAPTTRVIAVLSAMTLEIETLGQQLTDKAEMTVQGIRFTTGSLKDRR
Ga0066651_1038909823300006031SoilMRPMRRSLCVLAFLLLLLSAAGVAQVGNTPRPAPTTRVVAVLSAMTLEIETLGQQLTHKTEM
Ga0066651_1039354813300006031SoilMRPMPRSLCVFSFVLLLISAASVAQVGNTARPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRKVV
Ga0066651_1063464913300006031SoilMRPMLRSLYVLFFLLVLLSAASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQQLTDKTEM
Ga0066656_1106904513300006034SoilMRPMRRSLCVLSFLLLLISAASLAQVGNTPRPARTTRVIAVLSAMTLEIETLGQELTDKTEMTVQGIR
Ga0070715_1006616313300006163Corn, Switchgrass And Miscanthus RhizosphereMTPMRRSLSVFSFLLVLLAAASIARMGNTPRPAPTTPIIGILSAMTLEIEALGQELTDKTEMTVQGIRFTTG
Ga0070715_1033552613300006163Corn, Switchgrass And Miscanthus RhizosphereMRPMLRSLCVFSFVLLLLSAASVAQVDTHRPAPTARVIGILSAMTLEIKTLGQQLTDKTEMTVQGI
Ga0075018_1007243313300006172WatershedsMKPMCRSLCVFSFILLLLSAGSVAQVGNTPGPAPTARIIGILSAMTLEIETLGQELTDKTEMTVEGIRFTTGSLKD
Ga0070712_10026123223300006175Corn, Switchgrass And Miscanthus RhizosphereMRPMLRSLCVFSLVLLLLSAVSVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLK
Ga0066653_1034035613300006791SoilMRRSLCVFSFLLLLLLATSVAQVGNPPQPAPNTRVIAVLSAMTLEIETLGQQLTHKTEMTVQGIRFTTG
Ga0066653_1036698323300006791SoilMRPMRRSLCVLSFLLLLISAASLAQVGNTPRPARTTRVIAVLSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDR
Ga0066665_1167283913300006796SoilMRPMLRSLCVFSFLLVLLSAANLAQVGNTPRPAPTTRVIGILSAMTLEIEALGQELTDKTEMTVQGIRF
Ga0075421_10233991313300006845Populus RhizosphereMRPMRRSLCVLSFLLLLLSAASIAQVGNTPRRAPATRVTAVLSAMTLEIETLGQELTDKKEMTVQGIRFTTG
Ga0075433_1162307513300006852Populus RhizosphereMRPMRRSLCVLSFLLLLLSAASIAQVGNTPRPAPATRVTAVLSAMTLEIETLGQELTDKKEMTVQGIRFTT
Ga0075429_10028967633300006880Populus RhizosphereMRPMRRSLCVLSFLLLLLSAASFAQVGNTPRPAPATRVTAILSAMTLEIETLGQELTDKKEMT
Ga0066710_10122376133300009012Grasslands SoilMLRSLCVFSFLLLLLSAASVAQVGNTPRPAPTTRIIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKD
Ga0066710_10333542023300009012Grasslands SoilMRPMLRSLCVFSFVLLLLSAVSVAQVGNTARPAPTTPIIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDR
Ga0066710_10406960813300009012Grasslands SoilMRPMLRLLCVFSFLLLLLLPASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQQLTDKTEMTVQGIRFTTG
Ga0066709_10292072813300009137Grasslands SoilMLRSLCVFSFVLLLISAVSVAQVGITPRPAPTTRVIGILSAMTLEIETLGQELTDKTEM
Ga0099792_1075984813300009143Vadose Zone SoilMRRSLCVFSFLLLLLLATSVAQVGNPPQPAPNTRVIAVLSAMTLEIETLGQQLTHKTEMTVQ
Ga0134086_1016984113300010323Grasslands SoilMRRSLCVLSFLLLLISAASLAQVGNTPRPARTTRVIAVLSAMTLEIETLGQELTDKTEMTVQGIR
Ga0134086_1046914913300010323Grasslands SoilMLRSLCVFSFILLLLSAVSVAQVGNTARPAPTTRVIGILSAMTLEIETLSQELTDKTETTVQGIRFTTGTLKDRR
Ga0126381_10240598523300010376Tropical Forest SoilMRRSFCVLSFLLLVRSAVSVAQVGNTPRQVPATRITAVLSAMTVEIEAIGQELTDKKEMTIQGI
Ga0137376_1036736723300012208Vadose Zone SoilMRPMRRSLCVLSFLLLLLSAASVAQVDNTPRPAPTTPIIGILSAMTLEIETLGQELTDKTEMTVQG
Ga0137370_1033106523300012285Vadose Zone SoilMRRSLCVFSFLLLLLSAASVAQVGNIPRPASTTRVIAVLSAMTLEIKTLGEQLTDKTEMTVQGIRFTTGSLKDRRVVLAHSGMG
Ga0137370_1063029723300012285Vadose Zone SoilMRPGLRSLCVFSLLLLLLSAASVAQVGNTARPVPTTRVIGILSAITLEIETLGQELTD
Ga0137371_1061179513300012356Vadose Zone SoilMRRSLCVFSFLLLLLSAASVAQVGNIPRPASTTRVIAVLSAMTLEIKTLGEQLTDKTEMTVQGIRFTTG
Ga0137384_1087309323300012357Vadose Zone SoilMRRALCVFSFLLLLFLPASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEM
Ga0137407_1031567913300012930Vadose Zone SoilMRRSLCVFSFLLLLLSVASVAQVGITPRPAPTTGVIAVLSAMTLEIETLGQQLTDKAEMTVQG
Ga0164303_1121384513300012957SoilMRRSLCVFFLVLLLLPAASIAQVGDTSRPSPSTQVIGILSAMTLEIETLGQELMDKTEM
Ga0164299_1034255223300012958SoilMLRSLCVFSFLLLLLSVASIAQVGNTHRPAPTTRVIGILSAIKLEIETLGQELTDKTEVTVQGIRF
Ga0164301_1021268713300012960SoilMAAFGLLHNKEQRMRRMRRSLFVLCFLLVLVSAASVAQVDNTPRPANTTRVIAILSAISLEIETLGQELTDKTEMTVQGIR
Ga0164301_1085436223300012960SoilMRRSLCVFSFLLLLLSAASVAQVGNTPRPVPTTRVIAVLSAMTLEIETLGQQLTDKTEMT
Ga0134077_1025755113300012972Grasslands SoilMRPMRRSLWVLSSLLLLLSAASVAQVGNIPRPAPTTRVIAVLSAMTLEIETLGEQLTDKTEMTIQGIR
Ga0134110_1021896323300012975Grasslands SoilMRRSLCVLAFLLLLLSAAGVAQVGNTPRPAPTTRVVAVLSAMTLEIETLGQQLTDKTEMTIQGIRFTTGSLKDRNVVLAHS
Ga0164309_1004511313300012984SoilMTPIRRSLCVFSFLLLLLSVASIAQVGSTPRPAPTTRVSGILSAMTLEIETLGQELTDKT
Ga0164305_1124695213300012989SoilMRRSLCVFSFLLLLLSAANVAQVGNTPRPAPTTRVIAVLSAMTLEIETLGRQLTDKTEMTVQGIRFTTGS
Ga0157378_1297068713300013297Miscanthus RhizosphereMRRSLCVFSFLLLLLSVASVAQVGITPRPAPTTRVIAVLSAMTLEIETLGQQLTDKAEMTVQGIR
Ga0134089_1034866723300015358Grasslands SoilMLRSLCVFSFILLLLSAASVAQVGNTPRPAPTTRIIGILSAMTLEIETLGQQLTDKTEMTV*
Ga0132256_10172977713300015372Arabidopsis RhizosphereMRRSLCVFFSLLLLLSAASVAQVGNTPRPAPTTRVIAVLSAMTLEIETLGQQLTDKTEMTVQGIR
Ga0132257_10227090813300015373Arabidopsis RhizosphereMRLMRRSLGIVSLLLLLLTAASVAQLGNTPGRAPVTRVVAVLSAMTVEIETLGQELTD
Ga0132255_10408583813300015374Arabidopsis RhizosphereMLLSAASIAQVGNTSRPAPTTRVIGILSAMTLEIETLGQELTDKTEVTVQGIRFTTGSLKDRK
Ga0182034_1027445713300016371SoilMRSMRRSFCVLSFLFLLRSAVSVAQVGNTPRPAPATRITAVLSAMTLEIEAIGQPLTDKKEMTIQGIRFTT
Ga0184620_1008404713300018051Groundwater SedimentMRPMRSSLCVFSFFLLLLSAASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRR
Ga0184621_1032994723300018054Groundwater SedimentMTPMRRSLCVFSFLLLLLPAASVAQVGNTPRPAPTTRVIAVLSAMTLEIETLGQELTD
Ga0066655_1011631713300018431Grasslands SoilMRPMRRSLCVFSFLLLLLSAASVAQVGNIPRPASTTRVIAVLSAMTLEIKTLGEQLTDKTEMTVQGIRFTTGSLKDRRV
Ga0066655_1056066823300018431Grasslands SoilMRPMLRSLCVFSFLLLLLSAASVAQVGNTPRPAPTTRIIGILSAMTLEIETLGQELTDKTEM
Ga0066662_1291494913300018468Grasslands SoilMRLMLRSLYVFSFILLLLSAVSVAQVDNTPRPAPTTRVIGILSAMTLEIETLGQDLTDKTEMTVQGIRFTTGSLKD
Ga0137408_127838513300019789Vadose Zone SoilMRPMRRSLCVFSFLLLLLSVASVAQVGITPRPAPTTRVIAVLSAMTLEIETLGQQLTDKAEMTVQGIRFTTGRGSG
Ga0193707_102130433300019881SoilMRPMRRSLCVFSFLLVLLSAASVAQVGNTPRPAPTARVIGILSAMTLEIETLGQELTDKTEMTVQGIR
Ga0193725_101513433300019883SoilMRPMRRSLCVFSFLLVLLSAASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFT
Ga0193747_104312323300019885SoilMRPMRRSLCVFFFLLLLLSAGSVAQVDNTHRLAPTKRVIAVLSAMTLEIKTLGQQLTDKTEMTVQGIRFTTGSLKE
Ga0193693_104308223300019996SoilMRPMRRSFCVFFFLLLLLSAGSVAQVGNTHRPAPTKRVIAVLSAMTLEIETLGQQLTDKTEMTVQGIQFTTGSLKERRIVL
Ga0193755_109108823300020004SoilMTPMLRSLCVLFFLLLLLPAASVAQVGNTPRPASTARIIGILSAMTLEIETLGQELTDKTEMTVQGI
Ga0193721_110912523300020018SoilMTPMRRSLCVFSFLLVLLSAASVAQVGNTRRPAPTTPIIGILSAMTLEIETLGQELTDKTEMTD
Ga0193721_115895413300020018SoilMTPMLRSLCALFLLLLLLPAASVAQVGNTPRPASTARIIGILSAMTLEIETLGQELTDKTEMTVHGIRFTTG
Ga0193719_1011064623300021344SoilMRPMRRSLCVFSFILLLFSAASVGQVGNTPRPAPTTRVIGILSAMTLEIETLGQQLTDKTEMTVQGIRFTTG
Ga0193719_1017500013300021344SoilMTPMRRSLCVFSFLLLLLPAASVAQVGNTPRPAPTTRVIGVLSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRK
Ga0193719_1041615723300021344SoilMRPMRRSLCVLSLLLLLLSAASVAQVGNTPRPAPTTRIIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRKVVLTH
Ga0193709_103603323300021411SoilMTPMRRSLYVFFLLLLLLPAASVAQVGSTPRSAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRKV
Ga0193709_111689813300021411SoilMRPMRRSLCVFSFILLLLSAASVAQVGNTPRPAPTTRIIGILSAMTLEIETLGQQLTDKTEMTVQGIRFTTG
Ga0210402_1095905723300021478SoilMRPMHRSLCVFSFLLLLLSAASIAQTGNNPRPAPTTRVTAVLGAMTLEIETLGQELTEKAEVTVQG
Ga0222622_1015978823300022756Groundwater SedimentMRRSLCVFSLLLVLLSAASVAQVGNTARPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSL
Ga0222622_1038514713300022756Groundwater SedimentMTSMRRSLCVFFLLLLLLPAASVAQVGSTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIQFTTGSLKDRKVVLTHS
Ga0222622_1057659323300022756Groundwater SedimentMRPMLRSPCVLFFLLLLLSAASVAQVGNTPRPASATRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRQVV
Ga0222622_1100281713300022756Groundwater SedimentMLRSLCVFFLLLLLLPTASVAQVGNTPRPAPTTRVIAVLSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRRVV
Ga0222622_1103835413300022756Groundwater SedimentMRPVLRSLCVISLLLLLLPAASVAQVGNTPRPVPTTRIIGILSAMTLEIETLGQELTDKTEMTVQGIR
Ga0207666_106619613300025271Corn, Switchgrass And Miscanthus RhizosphereMRRSLCVFSFLLLLLSVASVAQVGITPRPAPTTGVIAVLSAMTLEIETLGQQLTDKTEMTVQGIRFTAGSLKDR
Ga0207663_1156200213300025916Corn, Switchgrass And Miscanthus RhizosphereMTPMRRSLSVFSFLLVLLAAASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSL
Ga0207709_1043458613300025935Miscanthus RhizosphereMRRSLCVFSFLLLLLSVASVAQVGITPRPAPTTRVIAVLSAMTLEIETLGQQLTDKTEMTAQGIRFTTRSLKDTKVVLAHSGMGK
Ga0209801_119585823300026326SoilMRPMLRSLCVLSFLLLLLSAASVAQVGITPGPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQG
Ga0209266_118187723300026327SoilMRPMRRSLCVFSFLLLLLSAASVAQVGNIPRPTPTTRVIGILSAMTLEIETLGQELTDKAEMTVQGIRFTT
Ga0209377_100169813300026334SoilMLRSLCVFSFILLLLSAASVAQVGNTVRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRKVVLTHS
Ga0209057_105053023300026342SoilMRPMRRSLCVLAFLLLLLSAAGVAQVGNTPRPAPTTRVIAVLSAMTLEIETLGQQLTDKTEMTVQGIRFTTGSLKDRNVVLAHS
Ga0257171_106373523300026377SoilMRLMLKSLCVFSFILLLLSAVSVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQ
Ga0209378_124134913300026528SoilMRPMRRSLCVLAFLLLLLSAAGVAQVGNTPRPAPTTRVIAVLSAMTLEIETLGQQLTDKTEMTVQGIRFTTGSLKDR
Ga0209157_130239013300026537SoilMRTMLRSLCVFSFILLLLSAASVAQVGNTPRPAPTKRVIGILSAMTLEIETLGQELTDKTEMTVQ
Ga0209376_120121813300026540SoilMRPMRRSLCVFSFILLLLSAASLAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDK
Ga0209156_1017007123300026547SoilMRRSLCVFSVLLLLLSAASVAQVGNTPPPAPTTRVIAVLSAMTLEIETLGQQLTDKTEMTVQG
Ga0209156_1046563423300026547SoilMRTMLRSLCVFSFILLLLSAASVAQVGNTPRPAPTKRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRRIVLTH
Ga0209161_1012167513300026548SoilMRTMLRSLCVFSFILLLLSAASVAQVGNTPRPAPTKRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKDRRIV
Ga0209474_1059151823300026550SoilMRRSLCVFSVLLLLLSAASVAQVGNTPPPAPTTRVIAVLSAMTLEIETLGQQLTDKTEMTVQGIRFTI
Ga0209577_1058672313300026552SoilMRPMLRSLCVLFFLLLVLSAASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQ
Ga0209689_114373423300027748SoilMRPMLRSLCVFSFILLLLSAASVAQVGNTVRPAPTTRVIGILSAMTLEIETLGQELTDKAEM
Ga0209481_1072512023300027880Populus RhizosphereMRRSLGIVSLLLLLLTAASVAQLGNTPRPAPVARVVAVLSAMTVEIETLGQELTDKKELIVQGIPFTTGSLKENRGKAETSFYSA
Ga0307293_1019593313300028711SoilMTPMLRSLCVLFFLLLLLPAASVAQVGNTPRPASTARIIGILSAMTLEIETLGQELTD
Ga0307313_1011136713300028715SoilMKPMCRSLCVLFFLLVLLSATSVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQQLTDKTEMTVQGIRFTT
Ga0307296_1068445813300028819SoilMTPMLRSLCVLFFLLLLLPAASVAQVGNTPRPASTARIIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGGLKDR
Ga0307312_1071432213300028828SoilMTPMLRSLCVLFFLLLLLPAASVAQVGNTPRPASTARIIGILSAMTLEIETLGQELTDETEMTVQGIRFTTGSLKDR
Ga0307278_1038028713300028878SoilMRPMRRSLCVLFFLLVLLSAASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTAGSLK
Ga0075386_1206140113300030916SoilMRPMLRSLCVLLFHLLLLSAASVAQVGNTPRPAPTTRLIGILSAMTLEIETLGEQLTDKTEMTV
Ga0170834_10687017023300031057Forest SoilVPFFLLLLLSAASVAQVGNSSPSAPTTRVIGILSAMTLEIETLGQQLTDKTEVTVHGIRFTTGSLKDKKKDVTSRGFAIN
Ga0170824_11424932423300031231Forest SoilMLRSLCVPFFFVLLISAASVAQVGNTPRPAPTPRVIAVLSAMTLEIETLGQQLADKTEMTVQGIRFTTGSLKD
Ga0170824_11918524613300031231Forest SoilMRPMLRSLCVLLFHLLLLSAASVAQVGNTPRPAPTTRLIGILSAMTLEIETLGEQLTDKTEMTVQGIR
Ga0170820_1363050213300031446Forest SoilMRPTLRSLCVFSLLLLLLSAASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIR
Ga0170820_1534447413300031446Forest SoilMRRMRRSLFVLFFLLVLVSAASVAQVDNTPRPANTTRVIAILSAMTLEIETLGQQLTDKTEMTVQGIR
Ga0170820_1633577013300031446Forest SoilMRRSLCVFSFLLLLLSAASVAQVGNTARPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTGSLKER
Ga0170820_1660828923300031446Forest SoilMRPMLRSLCVLFFLLLLLSAVSVAQVGNTPRPASNTRIIGILSAMTLEIETLGQELTDKTEMTVQGVQFT
Ga0170818_10118983213300031474Forest SoilMRPMLRSLCVLFFHLLLLSAASVAQVGNTPRPAPTTRLIGILSAMTLEIETLGEQLTDKTEMTVQGIR
Ga0310887_1032063033300031547SoilMRLMRRSLGIVSLLLLLLTAASVAQLGNTPRPAPVARVVAVLSAMTVEIETLGQELTDKKELIVQG
Ga0310813_1153027813300031716SoilMRPMRRLFCVLSFLLLLLSAASVAQVGNTPRPAPTPRVIAVLSAMTLEIETLGQQLTDKTEMTVQGIGTESREMEKLDRVQTPKGFNPLAPAYFGLSA
Ga0310907_1050905223300031847SoilMRLMRRSLGIVSLLLLLLTAASVAQLGNTPRPAPVARVVAVLSAMTVEIETLGQELTDKKELIVQGIPFTTGSL
Ga0310912_1034558513300031941SoilMRRSLCVFSFLLLLLSVASVAQVGITPRPAPTTRAIAVLSAMTLEIETLGQQLTDKAE
Ga0307472_10019758813300032205Hardwood Forest SoilMRPMLRSLCVFSFILLLISAASVAQVGNTPRPAPTTRVIGILSAMTLEIETLGQELTDKTEMTVQGIRFTTG
Ga0247830_1139892413300033551SoilMRPMLRSLCVLFVHLLLLSAASVAQVGNTPRPAPTTRLIGILSAMTLEIETLGEQLTDKTEMTVQGIRFTTGSLKGR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.