Metagenome / Metatranscriptome Family F057179

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F057179
Family Type	Metagenome / Metatranscriptome
Number of Sequences	136
Average Sequence Length	63 residues
Representative Sequence	MASSRPWPFDDDDRPSGSVRPLSQADLQAILAHLGDDPDQLLAGTGADRPVVAVRVRASVGRPGGSA
Number of Associated Samples	66
Number of Associated Scaffolds	136

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	97.78 %
% of genes near scaffold ends (potentially truncated)	95.59 %
% of genes from short scaffolds (< 2000 bps)	94.85 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (85.294 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (34.559 % of family members)
Environment Ontology (ENVO)	Unclassified (40.441 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (38.971 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.16% β-sheet: 0.00% Coil/Unstructured: 76.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 136 Family Scaffolds
PF02371	Transposase_20	2.94
PF13604	AAA_30	2.94
PF01548	DEDD_Tnp_IS110	1.47
PF07907	YibE_F	0.74
PF07077	DUF1345	0.74
PF15420	Abhydrolase_9_N	0.74
PF14759	Reductase_C	0.74
PF00872	Transposase_mut	0.74
PF00589	Phage_integrase	0.74
PF13683	rve_3	0.74
PF08378	NERD	0.74

COG ID	Name	Functional Category	% Frequency in 136 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	4.41
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.74
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.74
COG5438	Uncharacterized membrane protein	Function unknown [S]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
All Organisms	root	All Organisms	14.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
cellular organisms	root	All Organisms → cellular organisms	14.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	12.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.62 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.21 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.21 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.47 %
Thermoleophilum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.74 %
Streptomyces bingchenggensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bingchenggensis	0.74 %
Thermoleophilum album	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Streptomyces bingchenggensis BCW-1	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bingchenggensis → Streptomyces bingchenggensis BCW-1	0.74 %
Streptomyces sp. 891-h	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 891-h	0.74 %
Thermoleophilum album	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_100208595	Not Available	684	Open in IMG/M
3300000956\|JGI10216J12902_108734264	Not Available	793	Open in IMG/M
3300000956\|JGI10216J12902_112588221	Not Available	535	Open in IMG/M
3300003203\|JGI25406J46586_10244131	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300003373\|JGI25407J50210_10000360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8572	Open in IMG/M
3300003373\|JGI25407J50210_10003730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3673	Open in IMG/M
3300003373\|JGI25407J50210_10144309	Not Available	586	Open in IMG/M
3300003373\|JGI25407J50210_10166982	Not Available	542	Open in IMG/M
3300004114\|Ga0062593_103342606	Not Available	514	Open in IMG/M
3300005981\|Ga0081538_10016714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5610	Open in IMG/M
3300006847\|Ga0075431_100783083	Not Available	928	Open in IMG/M
3300006847\|Ga0075431_101657738	Not Available	597	Open in IMG/M
3300006880\|Ga0075429_100137622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	2137	Open in IMG/M
3300006880\|Ga0075429_101027926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	720	Open in IMG/M
3300006904\|Ga0075424_101301247	Not Available	773	Open in IMG/M
3300006904\|Ga0075424_102083423	Not Available	598	Open in IMG/M
3300009147\|Ga0114129_10974776	Not Available	1069	Open in IMG/M
3300009147\|Ga0114129_11926704	Not Available	716	Open in IMG/M
3300009147\|Ga0114129_13098853	Not Available	544	Open in IMG/M
3300009162\|Ga0075423_12560028	Not Available	557	Open in IMG/M
3300009789\|Ga0126307_10507376	Not Available	974	Open in IMG/M
3300009789\|Ga0126307_10744117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces bingchenggensis → Streptomyces bingchenggensis BCW-1	791	Open in IMG/M
3300009789\|Ga0126307_10763130	Not Available	780	Open in IMG/M
3300009789\|Ga0126307_11058285	Not Available	656	Open in IMG/M
3300009789\|Ga0126307_11468315	Not Available	553	Open in IMG/M
3300009840\|Ga0126313_11528370	Not Available	555	Open in IMG/M
3300010036\|Ga0126305_11129335	Not Available	540	Open in IMG/M
3300010038\|Ga0126315_10509268	Not Available	768	Open in IMG/M
3300010038\|Ga0126315_10759109	Not Available	636	Open in IMG/M
3300010041\|Ga0126312_10749869	Not Available	706	Open in IMG/M
3300010041\|Ga0126312_10958890	Not Available	625	Open in IMG/M
3300010041\|Ga0126312_11308045	Not Available	536	Open in IMG/M
3300010042\|Ga0126314_10695014	Not Available	745	Open in IMG/M
3300010045\|Ga0126311_10353622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1120	Open in IMG/M
3300010045\|Ga0126311_10676508	Not Available	823	Open in IMG/M
3300010166\|Ga0126306_10894120	All Organisms → cellular organisms → Bacteria → Terrabacteria group	720	Open in IMG/M
3300010166\|Ga0126306_11690820	Not Available	528	Open in IMG/M
3300010329\|Ga0134111_10532905	Not Available	519	Open in IMG/M
3300010395\|Ga0058701_10743491	Not Available	537	Open in IMG/M
3300011107\|Ga0151490_1259995	Not Available	546	Open in IMG/M
3300018072\|Ga0184635_10275992	Not Available	663	Open in IMG/M
3300018073\|Ga0184624_10545717	Not Available	500	Open in IMG/M
3300018466\|Ga0190268_10177482	Not Available	1129	Open in IMG/M
3300019377\|Ga0190264_10655725	Not Available	763	Open in IMG/M
3300019869\|Ga0193705_1093569	Not Available	559	Open in IMG/M
3300020016\|Ga0193696_1161353	Not Available	546	Open in IMG/M
3300021073\|Ga0210378_10399347	Not Available	510	Open in IMG/M
3300021078\|Ga0210381_10154502	Not Available	780	Open in IMG/M
3300021078\|Ga0210381_10323113	Not Available	560	Open in IMG/M
3300025933\|Ga0207706_11170815	Not Available	640	Open in IMG/M
3300026118\|Ga0207675_101404156	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300026704\|Ga0208581_102013	Not Available	910	Open in IMG/M
3300027209\|Ga0209875_1008308	Not Available	1227	Open in IMG/M
3300027809\|Ga0209574_10039409	Not Available	1163	Open in IMG/M
3300027873\|Ga0209814_10165314	Not Available	951	Open in IMG/M
3300027873\|Ga0209814_10219900	Not Available	822	Open in IMG/M
3300027954\|Ga0209859_1083788	Not Available	503	Open in IMG/M
3300028707\|Ga0307291_1047169	Not Available	1032	Open in IMG/M
3300028708\|Ga0307295_10003509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3578	Open in IMG/M
3300028710\|Ga0307322_10175933	Not Available	577	Open in IMG/M
3300028710\|Ga0307322_10211639	Not Available	531	Open in IMG/M
3300028711\|Ga0307293_10037135	Not Available	1488	Open in IMG/M
3300028711\|Ga0307293_10105489	Not Available	894	Open in IMG/M
3300028720\|Ga0307317_10108669	Not Available	922	Open in IMG/M
3300028722\|Ga0307319_10111051	Not Available	880	Open in IMG/M
3300028722\|Ga0307319_10196688	Not Available	659	Open in IMG/M
3300028722\|Ga0307319_10286461	Not Available	544	Open in IMG/M
3300028744\|Ga0307318_10070184	Not Available	1169	Open in IMG/M
3300028744\|Ga0307318_10090371	Not Available	1031	Open in IMG/M
3300028744\|Ga0307318_10360775	Not Available	512	Open in IMG/M
3300028771\|Ga0307320_10476845	Not Available	504	Open in IMG/M
3300028791\|Ga0307290_10249781	Not Available	650	Open in IMG/M
3300028793\|Ga0307299_10075055	Not Available	1256	Open in IMG/M
3300028793\|Ga0307299_10354324	Not Available	550	Open in IMG/M
3300028810\|Ga0307294_10372495	Not Available	532	Open in IMG/M
3300028819\|Ga0307296_10067429	All Organisms → cellular organisms → Bacteria	1898	Open in IMG/M
3300028828\|Ga0307312_10760600	Not Available	642	Open in IMG/M
3300028876\|Ga0307286_10240288	Not Available	662	Open in IMG/M
3300028876\|Ga0307286_10363226	Not Available	540	Open in IMG/M
3300028889\|Ga0247827_11225875	Not Available	521	Open in IMG/M
3300030336\|Ga0247826_10226949	Not Available	1296	Open in IMG/M
3300030336\|Ga0247826_10228255	Not Available	1293	Open in IMG/M
3300030336\|Ga0247826_11682261	Not Available	518	Open in IMG/M
3300030336\|Ga0247826_11787888	Not Available	503	Open in IMG/M
3300030336\|Ga0247826_11794538	Not Available	502	Open in IMG/M
3300030516\|Ga0268255_10204512	Not Available	571	Open in IMG/M
3300030516\|Ga0268255_10220313	Not Available	547	Open in IMG/M
3300031548\|Ga0307408_100202916	Not Available	1606	Open in IMG/M
3300031548\|Ga0307408_100459138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1106	Open in IMG/M
3300031548\|Ga0307408_101670436	Not Available	606	Open in IMG/M
3300031548\|Ga0307408_101969170	Not Available	561	Open in IMG/M
3300031548\|Ga0307408_102189088	Not Available	534	Open in IMG/M
3300031548\|Ga0307408_102445004	Not Available	507	Open in IMG/M
3300031731\|Ga0307405_10880235	Not Available	756	Open in IMG/M
3300031824\|Ga0307413_10181621	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1501	Open in IMG/M
3300031824\|Ga0307413_10341533	Not Available	1152	Open in IMG/M
3300031824\|Ga0307413_11179144	Not Available	665	Open in IMG/M
3300031824\|Ga0307413_11326013	Not Available	630	Open in IMG/M
3300031824\|Ga0307413_11410855	Not Available	613	Open in IMG/M
3300031824\|Ga0307413_11603413	Not Available	578	Open in IMG/M
3300031852\|Ga0307410_10079939	Not Available	2292	Open in IMG/M
3300031852\|Ga0307410_10612641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	909	Open in IMG/M
3300031852\|Ga0307410_10761887	Not Available	820	Open in IMG/M
3300031852\|Ga0307410_11839067	Not Available	538	Open in IMG/M
3300031852\|Ga0307410_11968385	Not Available	521	Open in IMG/M
3300031852\|Ga0307410_12126261	Not Available	502	Open in IMG/M
3300031901\|Ga0307406_11005446	Not Available	716	Open in IMG/M
3300031903\|Ga0307407_10114561	Not Available	1698	Open in IMG/M
3300031903\|Ga0307407_10503277	Not Available	888	Open in IMG/M
3300031903\|Ga0307407_11182041	Not Available	597	Open in IMG/M
3300031903\|Ga0307407_11204394	Not Available	592	Open in IMG/M
3300031903\|Ga0307407_11331890	Not Available	564	Open in IMG/M
3300031903\|Ga0307407_11488397	Not Available	535	Open in IMG/M
3300031903\|Ga0307407_11529825	Not Available	528	Open in IMG/M
3300031903\|Ga0307407_11584127	Not Available	519	Open in IMG/M
3300031911\|Ga0307412_11718838	Not Available	575	Open in IMG/M
3300031995\|Ga0307409_100165613	Not Available	1939	Open in IMG/M
3300031995\|Ga0307409_100180864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1866	Open in IMG/M
3300031995\|Ga0307409_101540711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	692	Open in IMG/M
3300031995\|Ga0307409_102507756	Not Available	544	Open in IMG/M
3300031995\|Ga0307409_102662586	Not Available	528	Open in IMG/M
3300032002\|Ga0307416_100339136	Not Available	1515	Open in IMG/M
3300032002\|Ga0307416_101885205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. 891-h	701	Open in IMG/M
3300032002\|Ga0307416_103147834	Not Available	552	Open in IMG/M
3300032004\|Ga0307414_12267393	Not Available	507	Open in IMG/M
3300032005\|Ga0307411_10452168	Not Available	1075	Open in IMG/M
3300032005\|Ga0307411_10764551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	847	Open in IMG/M
3300032005\|Ga0307411_11976540	Not Available	544	Open in IMG/M
3300032126\|Ga0307415_100360670	Not Available	1227	Open in IMG/M
3300032126\|Ga0307415_100485479	Not Available	1077	Open in IMG/M
3300032126\|Ga0307415_101069094	Not Available	754	Open in IMG/M
3300032126\|Ga0307415_101346796	Not Available	678	Open in IMG/M
3300032126\|Ga0307415_101965509	Not Available	569	Open in IMG/M
3300032126\|Ga0307415_102567049	Not Available	502	Open in IMG/M
3300034172\|Ga0334913_133608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	529	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	52.21%
Environmental	Environmental	47.79%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.21%
Terrestrial	Environmental → Terrestrial	44.12%
Aquatic	Environmental → Aquatic	3.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	44.12%
Roots	Host-Associated → Plants → Roots	3.68%
Phylloplane	Host-Associated → Plants → Phylloplane	2.94%
Freshwater	Environmental → Aquatic → Freshwater	2.21%
Sediment	Environmental → Aquatic → Sediment	1.47%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.47%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	43.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.68%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.47%
Sand	Environmental → Terrestrial → Soil → Sand	1.47%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.47%
Loam	Environmental → Terrestrial → Soil → Loam	0.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	43.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.41%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	3.68%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.21%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.47%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.47%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.74%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	34.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.12%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	13.24%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.41%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	3.68%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	2.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.21%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.47%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.74%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.74%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010395	Agave microbial communities from Guanajuato, Mexico - Or.Ma.e	Host-Associated	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026704	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN606 (SPAdes)	Environmental	Open in IMG/M
3300027209	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027954	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1002085952	3300000956	Soil	MASSRPWPFHDDDRPGGSVQPLRQADLQAILAHLGEDPDQLVAGTIGDRPVVAVRVRASVGRPGRSAHVQ
JGI10216J12902_1087342642	3300000956	Soil	MASSRPSPFDDEDRPSGSVWPLSQADLRAILAHLGDDADQLLAGTDADQPLVAVRVRASVGPP
JGI10216J12902_1125882212	3300000956	Soil	MANARAWPFDDDADRPSGSVRPLSQADLQAILAHLNSDDPDELLAGTSADRLVVAVRVRASVGQPGGSARATWRQ
JGI25406J46586_102441311	3300003203	Tabebuia Heterophylla Rhizosphere	MASPSPHRFPFDDHDRPSGSVQPLSQADLQAILAHLGDDPDQLLAGTIGDRPVVAMRVRATVGRPGGSAQAKWRQL
JGI25407J50210_100003608	3300003373	Tabebuia Heterophylla Rhizosphere	MASPRPWPFDDDNRPSGSVRPLSHADLQAILAHLNDDTDQLLAATGAGRPVMAGRVRASVGQPGGS
JGI25407J50210_100037302	3300003373	Tabebuia Heterophylla Rhizosphere	MASSRSWPFDDEDRPSGSVRPLSHADLEAILANLTSDPDQLLAGTDADRPVVAVRVRATVGRPGGSAQA
JGI25407J50210_101443092	3300003373	Tabebuia Heterophylla Rhizosphere	MASSRPWPFDDDDDRPSGSVRPLSQADLQAILAHLNNEEPDELLAGTGAERPVVAI
JGI25407J50210_101669821	3300003373	Tabebuia Heterophylla Rhizosphere	MASSRPWPFDDDDDRPSGSVRPLSQADLQAILAHLGDDSDQLLADTGADRPVVAVRVWASVGRPGGSAQARWR
Ga0062593_1033426062	3300004114	Soil	MASPRPWPFDYDDRPSGSVRPLSQADLQAILAHLGDDSDQLLADTGADRPVVAMRVRTSVGRPGGSAQAR
Ga0081538_100167146	3300005981	Tabebuia Heterophylla Rhizosphere	MASSRPWPFDGDDRPSGSVQPLSQADPQAILAHLNDDPDRLLTGTSAGRPVVAVRARASVG*
Ga0075431_1007830831	3300006847	Populus Rhizosphere	MAGSPPWPFDANDRPSGSVQPLSHADLQAILAHLSDDPDQLLAGTGADRPVVAVRVRASVGRPGGSA
Ga0075431_1016577382	3300006847	Populus Rhizosphere	MASSRPWPFDDDDRPSGSVRPLSQADLQAILAHLGDDPDQLLAGTGADRPVVAVRVRASVGRPGGSA
Ga0075429_1001376221	3300006880	Populus Rhizosphere	MASSRPWPFDDDEDRPSGSVRPLSQADLQAILAHLGDDPDQLLAGTIGDRPVVAVRV
Ga0075429_1010279262	3300006880	Populus Rhizosphere	MASPRPWPFDDDRPSGSIQPLSHADLQAILAHLDNNPDELLAGTSADRPVVAVPVRASVGRPGG
Ga0075424_1013012472	3300006904	Populus Rhizosphere	MASPRPWHSDDDDRASGSVRPLSQADLQAILAHLSEDPDQLLAGTGADQPVVAMRVRASVGR
Ga0075424_1020834231	3300006904	Populus Rhizosphere	MASPRPWPFDDDDRPSGSVRPLNQADLQAILAHLGDDPGQLLAGTGADRPVVALRVRASVGR
Ga0114129_109747761	3300009147	Populus Rhizosphere	MANPRPCPFDDDDRPSGSVRPLTQADLQVILAHLSDNPDQLLAGTDADQPVVAVRVRASVGRPGG
Ga0114129_119267042	3300009147	Populus Rhizosphere	MASSRPWPFDDEDRPSGSVRPLSRADLQAILAHLNNEEPDELLAGTGADRPVVAVRVRATVGRPGGS
Ga0114129_130988532	3300009147	Populus Rhizosphere	MASSQSWPFEDEDRPSGSVRPLSQADLQAILAHLTHFDNQEPDELLAGTDVDRPVVAVRVRA
Ga0075423_125600282	3300009162	Populus Rhizosphere	MASSRPWPFDDEDRPSGSVRPLTHADLQAILAHLDDDPDELLAGTGADRPVVAVRVRASV
Ga0126307_105073762	3300009789	Serpentine Soil	MANPRLWPFEDDDRPSGSVRPLRQADLRAILAHLASDDPDELLAGTGADRPVV
Ga0126307_107441171	3300009789	Serpentine Soil	MANPRPWPFDEDRPSGSVRPLSQADLQAILAHLGDDPNELLAGTDAGQPVVAVRA
Ga0126307_107631303	3300009789	Serpentine Soil	MAIPRSWPFDDDDDRPSGSVRPLSQADLQAILAHLGDDPDELLAGTDVDRPVVAVRVRATVGRPGGSA
Ga0126307_110582851	3300009789	Serpentine Soil	MANARAWPFDDDADRPSGSVRPLSQADLQAILAHLNSDDPDELLAGTSADRPVAAVR
Ga0126307_114683152	3300009789	Serpentine Soil	MSISRPWPFDEDDRPSGSVRPLSQADLQAILAHLSDDPDELLAGTGADRPVVAVRVRASVGRPGGSAQARWRQ
Ga0126313_115283701	3300009840	Serpentine Soil	MASSRPWPFDDEDRPSGSVRPLSQADLQAILAHLNEDLDELLAGTSADQPVVAMRVRATVGRPGGSAQARWRRL
Ga0126305_111293352	3300010036	Serpentine Soil	MASSRPWPFDDEDRPSGSVRPLSRADLQAILAHLADDRDELLAGTGADQPVVAIRVRASV
Ga0126315_105092681	3300010038	Serpentine Soil	MASPRPWPFDDDDRPSGSVRPLSQADLQAILAHLGDDSDELLAGTSADRPVPALRLGASV
Ga0126315_107591092	3300010038	Serpentine Soil	MANARPWPFEDDDRPSGSVRPLTQADLQAILAHLNSDDPDELPAGTSADRPVVAVRVRASVGQ
Ga0126312_107498691	3300010041	Serpentine Soil	MASSRPWPFDDHDDRPSGSVQPLSQADLQAIMAHLDDDPDQLLAYTSADRPVVAMRVRASVGR
Ga0126312_109588902	3300010041	Serpentine Soil	MASSRPWPFDDQDRPSGSVQPLTQADLQAILAHLTNDPDQLLASTSVGSPVVAVRVRASVGRP
Ga0126312_113080451	3300010041	Serpentine Soil	MANSQPWPFDDDDRTSGSVRPLSQADLAAILAYLGDRPEDLLVGNGTDRPLVTRLV
Ga0126314_106950141	3300010042	Serpentine Soil	MASPTPRRFPFDDDDRPSGSVRPLSQADLQAILAHLGDDPDQLLAGTNADQPVVAVRVRTTVGRPGGSA
Ga0126311_102660051	3300010045	Serpentine Soil	VEHNDRPSGSVRPLSQADLQAILARLTSDDPDELLAGTSADRPVVAVRVRAS
Ga0126311_103536221	3300010045	Serpentine Soil	MASPQPWPFDDDERPSGSVRPLSQADLQAILAHLSDDPDELLAGTGADRPVVAMWVRASVGRPGG
Ga0126311_106765081	3300010045	Serpentine Soil	MARLRSWPFDDDDRPSGSVRPLSQADLQAILAHLTSDDPDELLAGTSADRPVVAVR
Ga0126306_108941202	3300010166	Serpentine Soil	MASPQRFPFDDHDRPSGSVRPLSQADLQALLAHLTSDPDELLADTRADRPVVAMRVRASVGRPGGSA
Ga0126306_116908202	3300010166	Serpentine Soil	MSISRPWPFDEDDRPSGSVRPLSQADLQAILAHLSDDPDRLLAGTDADRSVVTVRVRASMGRP
Ga0134111_105329051	3300010329	Grasslands Soil	MASSRSWPFDDDRPSGSVRSLSQADLQAILAHLGGDPDELLAGTGADRPVVAV*
Ga0058701_107434912	3300010395	Agave	MASPRPWPFDDDDRPSGSVRPLSQADLQAILAHFTDDDPEELLAGSADRPVVAVRVRATI
Ga0151490_12599951	3300011107	Soil	MASSRPWPFDDDDGRPSGSVRPLSQADLQAILAHLGDDPDQLLAGTTADRPVVAVRVRASVG
Ga0184635_102759922	3300018072	Groundwater Sediment	MASPRRFPFDDDDRPSGSVQPLSQADLQAILAHLGDDPDELLAGTSVDQPVVAVRVRA
Ga0184624_105457172	3300018073	Groundwater Sediment	MASGRPWPLDDDDRPSGSVRPLSQADLQAILTRLGDDPDELLAGTGADRPVVAVRVRASVGRPGGSAQ
Ga0190268_101774821	3300018466	Soil	MASSRSWPFDDDEDRPSGSVRPLSQADLQAILAHLSDDPDEILAGTEADRPVVAVRVRASVGRP
Ga0190264_106557252	3300019377	Soil	MASPRSWPFDDDDRPSGSVRPLSPADLQAILAHLSDDPDELLAGTGADRPVAAVRVRATVGRPGGSAQ
Ga0193705_10935692	3300019869	Soil	MASSGPWPFDDDDRPSGSVRPLSQADLQAILAHLNSDPDQLLGGTGVDRPVVAVRVRASVGRPGG
Ga0193696_11613531	3300020016	Soil	MASPRPWPFDDDDRPSGSVRPLSQADLQAIVAHLGDDPDQLLAGTSAGRPAVVATGVRAS
Ga0210378_103993472	3300021073	Groundwater Sediment	MARPRRFPSGDDDRPSGSVQPLSQADLEAILAHLGDDPDQLLAGTGADRPVVA
Ga0210381_101545021	3300021078	Groundwater Sediment	MASPRPWPFDDDDRSSGSVRPLSRADLQAILAHLAEDRDELLAGTGAHQPVVAIRVRASVGRPGGSAQ
Ga0210381_103231132	3300021078	Groundwater Sediment	MARPRRFPSGDDDRPSGSVQPLSQADLEAILAHLGDDPDQLLAGTGADRPVVAVRVRASVGRPGGSAQAR
Ga0207706_111708152	3300025933	Corn Rhizosphere	MASPRPWPFDDDDRPSGSVRPLSQADLQAILAHLINDDPEELLAGTGVDRPVVAVRVRASVG
Ga0207675_1014041561	3300026118	Switchgrass Rhizosphere	MASPRPWPFDDDDRPSGSVRPLSQADLQAILAHLDDDPDQLPARTGAGRPVVAIRVR
Ga0208581_1020132	3300026704	Soil	MASSPTPHRFPFDDDDRPSGSVRPLSQADLPAILAHLGDDPDELLAGTGADRAVVAVRVRGSVGRPGGSAQARWRR
Ga0209875_10083082	3300027209	Groundwater Sand	MASSQPWSFEDDDRPSGSIQPLSQADLQAILAHLSDDPDQLLTGTGADRPVVAMRVRASVGQPGGSAQRRWRR
Ga0209574_100394092	3300027809	Agave	MASSRSWPFDDDDRPSGSVRPLSQADLQAILAHLGDDPDELLAGTSADQPVVAV
Ga0209814_101653142	3300027873	Populus Rhizosphere	MASSRPWPFDDDEDRPSGSVRPLSQADLQAILAHLGDDPDQLLAGTIGDRPVVAVRVQAS
Ga0209814_102199001	3300027873	Populus Rhizosphere	MASSRPWPFEDDDRPRGSVRPLSQADLQAILAHFSDDPDELLAGTNADRPVVAVRVRASSSSG
Ga0209859_10837881	3300027954	Groundwater Sand	MASSRPWPFDDNRPSGSVRPLSQADLQAILAHLSDDHDELLAGTGADRPVVAVRVRTSVGRPGGSAQARWRQE
Ga0307291_10471691	3300028707	Soil	MASSRPWPFDEEDRPSGSVRPLSQADVRAILAHLIDDPDELLAGTGADWPVVAVRVRASVGRPGGSAQ
Ga0307295_100035091	3300028708	Soil	MASPRPWPFDDDDRPSGSVRPLSHADLQAILAHLEDDPDQLPTGTSAGRPVLARRVRASVGQ
Ga0307322_101759332	3300028710	Soil	MASSRPWPFDEEDRPSGSVRPLSQADVRAILAHLIDDPDELLAGTGADWPVVAVR
Ga0307322_102116391	3300028710	Soil	MASPRPWPLDDDDRPSGSVRPLSHADLQAILAHLEDDPDQLPTGTSAGRPVLARRVRASVGQPGGSAHAQ
Ga0307293_100371351	3300028711	Soil	MASPRPWPFDDDDRPSGSVRPLSPADLQAILAHLGNDPDQLLAGTDADRPVVAVRVRATVGRPGGSAQARWR
Ga0307293_101054891	3300028711	Soil	MASSRPWPFDEEDRPSGSVRPLSQADVRAILAHLIDDPDELLAGTGADWPVVAVRVRASVGRPG
Ga0307317_101086691	3300028720	Soil	MATSRPWPFEDDDRPSGSVRPLSQADLQAILAHLSDDSDELLVGTSADQPVVAMRVRASVGRAGGSAHARWRQL
Ga0307319_101110511	3300028722	Soil	MASPRPWPFDDDRPSGSVQPLSQADLQAIIAHLGDDPDQLLTGTGAGRPVVGMRVRASVGQPGG
Ga0307319_101966882	3300028722	Soil	MASSPPWPFDDNDRPSGSVQPLSQADLQAILAHLGDDPDQLVAGTSADRPVVAVRVRAS
Ga0307319_102864612	3300028722	Soil	MASSRPWPFEDDDRPSGSVQPLSQADLQAILAHLDDDPDELLAGTGVDRPVVAVRMR
Ga0307318_100701841	3300028744	Soil	MASPRPWPFDDDDRPSGSVRPLSHADLQAILAHLEDDPDQLPTGTSAGRPVL
Ga0307318_100903711	3300028744	Soil	MANSRAWPFDDEDRPSGSVRPLSQSDLQAILVHLNGDDPDQLLAGTGADRPVVAVRVRA
Ga0307318_103607751	3300028744	Soil	MASSRPWPFDDDDRPSGSVQPLSQADLQAILAHLGDEPDELLAGTDADRPVVALRVRASVGRPGGSAHAQWR
Ga0307320_104768451	3300028771	Soil	MTNPRSWPLDDDEDRPSGSVRPLSQADLQAILAHLADDPDELLAGTGADRPVVAVR
Ga0307290_102497811	3300028791	Soil	MASPRSWPFDDDDRPSGSVRPLSQADLQAILAHLNSDPDQLLGGTGVDRPVVAVRVRASV
Ga0307299_100750552	3300028793	Soil	MASSRSWPFGDEDRPSGSVRPLSQADLQAILAYLDDDPDQLLSGTSAGSPVVAVRVRASVGRPGGS
Ga0307299_103543241	3300028793	Soil	MASPRPWPLDDDEDRPSGSVRPLSQADLQAILAHLNNDRDELLSGTSGGFPVVAVRVRAS
Ga0307294_103724951	3300028810	Soil	MASPRPWPFEDDDRPSGSVRPLSQADLEAILAHLGDNPDELLAGTSADRPVVAVRVR
Ga0307296_100674291	3300028819	Soil	MASPRPWPFDDDDRPSGSVRPLSHADLQAILAHLEDDPDQLPTGTSAGRPVLARRVRASVGQPGGSAHAQ
Ga0307312_107606002	3300028828	Soil	MASPRPWPFDDDDRPSGSVQPLSQADLQAILAHLGDDPDELLAGTDAGRPVVAV
Ga0307286_102402881	3300028876	Soil	MASPRPWPFDDDDRPSGSVQPLSHADLQAILAHLGDDPDQLLAGTSAGRPVVAMRVRAS
Ga0307286_103632261	3300028876	Soil	MASPRPWPFDDDDRPSGSVRPLSQADLQAILTHLGDDPDRLLAGTGTGAGRPVVAVRVRASV
Ga0247827_112258752	3300028889	Soil	MASPRPWPFDDDDRPSGSVRPLSQADLQAILAHLGDDDPDHLLTGTGADRPVPVSRWSG
Ga0247826_102269491	3300030336	Soil	MASSRPWPFDDEDRPSGSVRPLSQADLQAILAHLNNEEPDELLAGTGEDRPVVAVRVRASMGR
Ga0247826_102282552	3300030336	Soil	MASSRPWPFDDNDRPSGSVQPLSQADLQAILAHLSDDPDELLAGTGADRPVVAVRVRASV
Ga0247826_116822612	3300030336	Soil	MASSRPWPFDDEDRPSGSVRPLSQADLQAILAHLTSGDPDQLLAGTDADRPVVAVRVRASVGRPGGSA
Ga0247826_117878881	3300030336	Soil	MASPRPWPFDDDDRPSGSVRPLSQADLQAILAHLGDDDPDHLLTGTGADRPVVAVRVRASVGQPGGSA
Ga0247826_117945382	3300030336	Soil	MANARPWPFDDDRPSGSVQPLRQADLQAILAHLDDHPDRLLAGTSADRPVVAVRVRASVGQPGGAG
Ga0268255_102045122	3300030516	Agave	MASSRPWPLDDDENRPSGSVRPLSQADLRAILALLGDDPDELLAGTGADRPVVAVRVRATVGRAGGSAQAA
Ga0268255_102203131	3300030516	Agave	MARSRPWPFDDEDRPSGSVRPLSHADLHAILAHLGDDPDQLLAGTDADQPVVAIRVRASVGRPGGSAQATWR
Ga0307408_1002029162	3300031548	Rhizosphere	MARSRPWPFDDDEDRPSGSVRPLSQADLQAILAHLSDDPDQLLAGTGEDRPVVAVRV
Ga0307408_1004591381	3300031548	Rhizosphere	MANSRLWPFDDEDRPSGSVRPLSQADLQAILVHLGDDPDGLLAGTGADRPLVAVRVRASVGRPGGSAQARWR
Ga0307408_1016704361	3300031548	Rhizosphere	MASSRPWPFEADDRPSGSVRPLSQADLRAILAHLDSDPDELLAGTGVDRPVVAVRVRATVGRP
Ga0307408_1019691701	3300031548	Rhizosphere	MASSPPWPFDDDDDRPSGSVRPLSQADLQAILAHLGDDPNELLAGTDAGQPVVAV
Ga0307408_1021890882	3300031548	Rhizosphere	MASSRPWPFDDDDRPSGSVRPLSQADLQAILAHLSDDPDQLLAGTDADRPVVAVRVRASVGRPGGSAHARWR
Ga0307408_1024450041	3300031548	Rhizosphere	MANARAWPFDDDDRPSGSVRPLSQADLQAILAHLTSDDPDELLAGTSADWPVVAVR
Ga0307405_108802351	3300031731	Rhizosphere	MASPRPWPFDDDDRPSGSVRPLSQADLQAIVAHLEAEPDQLLAGTGADRPVVAERVRASVGRPGGS
Ga0307413_101816212	3300031824	Rhizosphere	MASPQRFPFDDNDRPSGSMRPLSQADLQAILAHLSDDPDQLLTGTGEDRPVVAVRVRASV
Ga0307413_103415332	3300031824	Rhizosphere	MASSPPWPLEDDDRPSGSVGPLSHADLQAILAHLNEDSDELLADTSADRPVVAMRVRASVGRPG
Ga0307413_111791441	3300031824	Rhizosphere	MASPQRFPFDDHDRPSGSVRPLSQADLQAILTHLTSDPDELLADTRADRPVVAVRVRASV
Ga0307413_113260131	3300031824	Rhizosphere	MASPRRFPFDDEDRPSGSVRPLSQADLQAILAHLNEDSDELLAGTSADQPVVAMRVRAS
Ga0307413_114108551	3300031824	Rhizosphere	MANARPWPFEDDDRPSGSVRPLTQADLQAILAHLTSDDPDELLAGTSADRPAVAVRVRASVGQP
Ga0307413_116034131	3300031824	Rhizosphere	MASPRPWPFEDDDRPSGSVRPLSQADLQAILAHLGDNPDELLAGTSADRPVVAVRVRASVGRPGGSAQ
Ga0307410_100799391	3300031852	Rhizosphere	MASSRPWPFDDDEDRPSGSVRPLSQADLQAILAHLNNDRDELLAGTGADRPVVAVRV
Ga0307410_106126412	3300031852	Rhizosphere	MASPRWFPFDDEERPSGSVRPLSQADLQAILAHLNEDSEELLAGTSGDQPVVAMRVRASVDRPGG
Ga0307410_107618872	3300031852	Rhizosphere	MARSRPWPFDDDERPSGSVRPLSQADLQAILAHLDDDPDQLLVSTSAGRPVVAMRVRASVGQPGGSAHAQWRR
Ga0307410_118390671	3300031852	Rhizosphere	MASSQSWPFDDEDRPSGSVRPLSQADLQAILAHLGDDPNELLAATGAGQPVVAVRVRASV
Ga0307410_119683851	3300031852	Rhizosphere	MASSRPWPFDDEDRPSGSVRPLSQADLQAILAHLSDDPEELLASTSADRRVVGVGVRATVGRPG
Ga0307410_121262612	3300031852	Rhizosphere	MASSRSWPLDDDDRPSGSVQPLSQADLQAILGYLADNPYELLTATGADRPVVAARVRASVGRPGG
Ga0307406_110054461	3300031901	Rhizosphere	MANARAWPFDDDADRPSGSVRPLSQADLQAILAHLNSDDPDELLAGTSADRPVVAVRAR
Ga0307407_101145611	3300031903	Rhizosphere	MARSRPWPFDEDRPSGSVRPLSQADLQTILAHLSDDPDQLLTGTGEDRPVVAVRVRASVG
Ga0307407_105032771	3300031903	Rhizosphere	MASPTPQRFPFHDDDRPSGSVRPLSQADLQAILGYLGDDSEELLAGTGADRPVVAMRVRATVGR
Ga0307407_111820411	3300031903	Rhizosphere	MASSPPWPFDDDDRPSGSVRPLSQADLPAILAHLASDNPDELLASTSADRPVVAVRVRATVGRPGGSAQARW
Ga0307407_112043942	3300031903	Rhizosphere	MANARPWPFEDDDRPSGSVRPLTQADLQAILAHLTSDDPDQLLAGTSADRPAVAV
Ga0307407_113318902	3300031903	Rhizosphere	MASPTPRRFPFDDDDRPSGSVRPLSQADLQAILAHLSDDPDELLAATAADRPVVAVRVRATVGRPGGSAQ
Ga0307407_114883971	3300031903	Rhizosphere	MASSRPWPFDEEDRPSGSVQPLSQADLQAILAHLGDDPDELLAGTIGDRSVVAMRVRARVGRPG
Ga0307407_115298251	3300031903	Rhizosphere	MASPRPWPFDDEDRPSGSVRPLSQADLQAILAHLSDDPDQLLAGTGADRPVVAVR
Ga0307407_115841271	3300031903	Rhizosphere	MASPQRFPFDDHDRPSGSVRPLSQADLQAILTHLTSDPDELLADTRADRPVVAVRVRASVGRPGGSAQARWRQ
Ga0307412_117188382	3300031911	Rhizosphere	MAHSRPWPFDDDDRPSGSVRPLSQADLQAILAHLGDDSDELLAGTSADRPVPALRLGASVGRPGG
Ga0307409_1001656131	3300031995	Rhizosphere	MASSRPWPFDEEDRPSGSVRPLSQADLQAILAHLGDDPDQLLADTIGDRAVVAMRVRAKVGR
Ga0307409_1001808641	3300031995	Rhizosphere	MASSRPWPFDDDDRPSGSVQPLSQADLQAILAHLNSDPDQLLAGTGADRPVVAVRVRASVGRPG
Ga0307409_1015407112	3300031995	Rhizosphere	RPSGSVRPLSQADLQAILAHLGDDPDQLLAGTGANQPVVAVRVRASVGRPGGSAQATWQRLRAAE
Ga0307409_1025077562	3300031995	Rhizosphere	MASPTPRRFPFDDDDRPSGSVQPLCQADLQAILAHLGDDPDELLAGTIGDRPVVAVR
Ga0307409_1026625862	3300031995	Rhizosphere	MASSRPWPFDDDDDRPSGSVRPLSQADLQAILAHLSDDPDGLLAGTGADQPVVAIRVPAS
Ga0307416_1003391362	3300032002	Rhizosphere	MASSPPWPFDDDDRPSGSVRPLSQADLQAILAHLGDDPDQLLANTGADRPVVALRVRT
Ga0307416_1018852051	3300032002	Rhizosphere	DDDRPSGSVRPLSQADLQAILAHVNHDPDQLLAGTGADRPVVAVQVRASVGRPGGSGQAR
Ga0307416_1031478342	3300032002	Rhizosphere	LASSRSCPFDDDERPSGSVQPLSQADLQAVLAHLGDDPNQLLAGSGADRP
Ga0307414_122673931	3300032004	Rhizosphere	MASPRPWPFDDDDDRPSGSVQPLSQADLQAILAHVNHDPDQLLAGTGADRPVVAVQVRASVGRPGGSGQAR
Ga0307411_104521682	3300032005	Rhizosphere	MASSQPWPFDDDDRPSGSVQPLSPADLQAILAHLADDPDQLLASTDADRPVLAVQVR
Ga0307411_107645511	3300032005	Rhizosphere	MARPRSWPFDDDDRPSGSVRPLSQADLQAILAHLTDDPDELLAGTHVDRPVVAV
Ga0307411_119765401	3300032005	Rhizosphere	MASSRPWPFEDDDRPSGSVQPLSQADLQAILAHLDDDPDELLAGTGVDRPVVAVRMRASVGRPGGSALDRW
Ga0307415_1003606702	3300032126	Rhizosphere	MANPRPWPFDDDDRPSGSVRPLSQADVQAILAQLNDDPDQLLASTSAGQPVVAMRVRASVGQPGG
Ga0307415_1004854791	3300032126	Rhizosphere	MASSRSWPFDDDDDHPSGSVRPLSQADLQAILAHLSDDPDELLAGTEADRPVVAVRIR
Ga0307415_1010690942	3300032126	Rhizosphere	MASPRSWPYDDEDRPSGSVRPLSQTDLQAILAHLDDDPDQLLTSTSAGRPVVAMRVR
Ga0307415_1013467962	3300032126	Rhizosphere	MASPRRFPFDDDDRPSGSVRPLSQADLQAILAHLGDDPEELLAGTGADRQVVAIRVRA
Ga0307415_1019655092	3300032126	Rhizosphere	LASSRSCPFDDDERPSGSVQPLSQADLQAVLAHLGDDPNQLLAGSGADRPVVAVRVRA
Ga0307415_1025670492	3300032126	Rhizosphere	MASSRSWPFDDDEDRPSGSVRPLSQADLQTVLAHLTDDDPDQPLVGTDADRPLVVVRVRASVGRPGGSTQQR
Ga0334913_133608_325_492	3300034172	Sub-Biocrust Soil	MLSTNRLSQADRQAILAHVSHDPGQLLADIDADRPVAAVQVRTRVGHPDGSAQAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F057179

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences