Metagenome / Metatranscriptome Family F056855

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056855
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	63 residues
Representative Sequence	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVANGQIGNRQRDAA
Number of Associated Samples	91
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.86 %
% of genes near scaffold ends (potentially truncated)	18.98 %
% of genes from short scaffolds (< 2000 bps)	72.99 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.234 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.438 % of family members)
Environment Ontology (ENVO)	Unclassified (27.737 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.474 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.33% β-sheet: 0.00% Coil/Unstructured: 36.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF01145	Band_7	27.74
PF02163	Peptidase_M50	16.06
PF00072	Response_reg	0.73
PF00496	SBP_bac_5	0.73
PF00158	Sigma54_activat	0.73
PF07238	PilZ	0.73
PF03928	HbpS-like	0.73
PF08309	LVIVD	0.73
PF14384	BrnA_antitoxin	0.73
PF02852	Pyr_redox_dim	0.73
PF01968	Hydantoinase_A	0.73
PF00037	Fer4	0.73
PF13419	HAD_2	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.23 %
Unclassified	root	N/A	35.77 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.23 %
Unclassified	root	N/A	35.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.23 %
Unclassified	root	N/A	35.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.77 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.47 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.77 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.38 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.65 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.73 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.65 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.73 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.77 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	2.92 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.73 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.73 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.77 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	2.92 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	0.73 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.73 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.77 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	2.92 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.73 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.73 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10054644	All Organisms → cellular organisms → Bacteria	2107	Open in IMG/M
3300002245\|JGIcombinedJ26739_101543263	Not Available	560	Open in IMG/M
3300004139\|Ga0058897_10807059	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300004152\|Ga0062386_100037956	All Organisms → cellular organisms → Bacteria	3601	Open in IMG/M
3300005534\|Ga0070735_10457561	Not Available	762	Open in IMG/M
3300005538\|Ga0070731_10006576	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	9231	Open in IMG/M
3300005541\|Ga0070733_10282079	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300005541\|Ga0070733_10958264	Not Available	575	Open in IMG/M
3300005542\|Ga0070732_10500932	Not Available	735	Open in IMG/M
3300005610\|Ga0070763_10164342	All Organisms → cellular organisms → Bacteria → Acidobacteria	1167	Open in IMG/M
3300006041\|Ga0075023_100160939	Not Available	836	Open in IMG/M
3300006041\|Ga0075023_100482789	Not Available	554	Open in IMG/M
3300006050\|Ga0075028_100013626	All Organisms → cellular organisms → Bacteria	3428	Open in IMG/M
3300006050\|Ga0075028_100299226	Not Available	896	Open in IMG/M
3300006050\|Ga0075028_100316154	Not Available	874	Open in IMG/M
3300006050\|Ga0075028_100538795	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	686	Open in IMG/M
3300006052\|Ga0075029_100808268	Not Available	638	Open in IMG/M
3300006172\|Ga0075018_10670957	Not Available	558	Open in IMG/M
3300006176\|Ga0070765_100038698	All Organisms → cellular organisms → Bacteria → Acidobacteria	3796	Open in IMG/M
3300006176\|Ga0070765_101289041	Not Available	689	Open in IMG/M
3300006354\|Ga0075021_10059363	All Organisms → cellular organisms → Bacteria → Acidobacteria	2224	Open in IMG/M
3300006354\|Ga0075021_10256773	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300006864\|Ga0066797_1268370	Not Available	595	Open in IMG/M
3300009523\|Ga0116221_1218582	Not Available	824	Open in IMG/M
3300010379\|Ga0136449_100023501	All Organisms → cellular organisms → Bacteria	15476	Open in IMG/M
3300010379\|Ga0136449_100552142	All Organisms → cellular organisms → Bacteria → Acidobacteria	1980	Open in IMG/M
3300010379\|Ga0136449_100890704	All Organisms → cellular organisms → Bacteria → Acidobacteria	1452	Open in IMG/M
3300010379\|Ga0136449_101914108	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	880	Open in IMG/M
3300011120\|Ga0150983_12452207	Not Available	595	Open in IMG/M
3300011269\|Ga0137392_10174764	All Organisms → cellular organisms → Bacteria → Acidobacteria	1746	Open in IMG/M
3300011270\|Ga0137391_10368104	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300011270\|Ga0137391_10412514	All Organisms → cellular organisms → Bacteria → Acidobacteria	1153	Open in IMG/M
3300011270\|Ga0137391_10825839	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	762	Open in IMG/M
3300012010\|Ga0120118_1057372	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300012202\|Ga0137363_11037909	Not Available	696	Open in IMG/M
3300012357\|Ga0137384_10886847	Not Available	719	Open in IMG/M
3300012361\|Ga0137360_11902145	Not Available	501	Open in IMG/M
3300012363\|Ga0137390_10876881	All Organisms → cellular organisms → Bacteria → Acidobacteria	853	Open in IMG/M
3300012363\|Ga0137390_11280006	Not Available	679	Open in IMG/M
3300014165\|Ga0181523_10326611	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300014501\|Ga0182024_10063758	All Organisms → cellular organisms → Bacteria	5658	Open in IMG/M
3300016750\|Ga0181505_10447702	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300017822\|Ga0187802_10001470	All Organisms → cellular organisms → Bacteria	6369	Open in IMG/M
3300017822\|Ga0187802_10010920	All Organisms → cellular organisms → Bacteria → Acidobacteria	2932	Open in IMG/M
3300017823\|Ga0187818_10005931	All Organisms → cellular organisms → Bacteria	5215	Open in IMG/M
3300017823\|Ga0187818_10025120	All Organisms → cellular organisms → Bacteria	2550	Open in IMG/M
3300017823\|Ga0187818_10147149	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300017927\|Ga0187824_10004661	All Organisms → cellular organisms → Bacteria	3784	Open in IMG/M
3300017927\|Ga0187824_10018484	All Organisms → cellular organisms → Bacteria	2046	Open in IMG/M
3300017928\|Ga0187806_1051582	All Organisms → cellular organisms → Bacteria → Acidobacteria	1252	Open in IMG/M
3300017928\|Ga0187806_1260438	Not Available	602	Open in IMG/M
3300017930\|Ga0187825_10007567	All Organisms → cellular organisms → Bacteria → Acidobacteria	3636	Open in IMG/M
3300017930\|Ga0187825_10280546	Not Available	617	Open in IMG/M
3300017933\|Ga0187801_10010637	All Organisms → cellular organisms → Bacteria	3012	Open in IMG/M
3300017933\|Ga0187801_10358066	Not Available	601	Open in IMG/M
3300017933\|Ga0187801_10439769	Not Available	546	Open in IMG/M
3300017936\|Ga0187821_10004405	All Organisms → cellular organisms → Bacteria → Acidobacteria	4661	Open in IMG/M
3300017955\|Ga0187817_10059534	All Organisms → cellular organisms → Bacteria	2362	Open in IMG/M
3300017955\|Ga0187817_10621927	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	689	Open in IMG/M
3300017975\|Ga0187782_10744179	Not Available	757	Open in IMG/M
3300017994\|Ga0187822_10008974	All Organisms → cellular organisms → Bacteria → Acidobacteria	2347	Open in IMG/M
3300017995\|Ga0187816_10066826	All Organisms → cellular organisms → Bacteria → Acidobacteria	1519	Open in IMG/M
3300018006\|Ga0187804_10123254	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300018006\|Ga0187804_10188713	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300018007\|Ga0187805_10011726	All Organisms → cellular organisms → Bacteria → Acidobacteria	3709	Open in IMG/M
3300018042\|Ga0187871_10371554	Not Available	790	Open in IMG/M
3300018088\|Ga0187771_10576534	All Organisms → cellular organisms → Bacteria → Acidobacteria	954	Open in IMG/M
3300020580\|Ga0210403_10528140	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300020580\|Ga0210403_10860494	Not Available	717	Open in IMG/M
3300020581\|Ga0210399_10127287	All Organisms → cellular organisms → Bacteria → Acidobacteria	2096	Open in IMG/M
3300020581\|Ga0210399_10661589	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300020581\|Ga0210399_11394867	Not Available	548	Open in IMG/M
3300020582\|Ga0210395_10850554	Not Available	679	Open in IMG/M
3300020583\|Ga0210401_10001058	All Organisms → cellular organisms → Bacteria → Acidobacteria	32891	Open in IMG/M
3300021088\|Ga0210404_10046282	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
3300021168\|Ga0210406_11292453	Not Available	526	Open in IMG/M
3300021170\|Ga0210400_10315484	All Organisms → cellular organisms → Bacteria → Acidobacteria	1284	Open in IMG/M
3300021171\|Ga0210405_10743435	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300021178\|Ga0210408_10018224	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5638	Open in IMG/M
3300021178\|Ga0210408_10539451	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300021178\|Ga0210408_10987009	Not Available	652	Open in IMG/M
3300021180\|Ga0210396_11693869	Not Available	514	Open in IMG/M
3300021407\|Ga0210383_11376224	Not Available	588	Open in IMG/M
3300021420\|Ga0210394_10541131	Not Available	1024	Open in IMG/M
3300021420\|Ga0210394_11266757	Not Available	631	Open in IMG/M
3300021420\|Ga0210394_11510411	Not Available	568	Open in IMG/M
3300021433\|Ga0210391_10869769	Not Available	704	Open in IMG/M
3300021433\|Ga0210391_11495042	Not Available	518	Open in IMG/M
3300021478\|Ga0210402_10868569	Not Available	828	Open in IMG/M
3300021479\|Ga0210410_11046203	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300021559\|Ga0210409_10002004	All Organisms → cellular organisms → Bacteria	25167	Open in IMG/M
3300021559\|Ga0210409_10007438	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	11281	Open in IMG/M
3300021861\|Ga0213853_10954520	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300022731\|Ga0224563_1009762	Not Available	767	Open in IMG/M
3300024227\|Ga0228598_1007939	All Organisms → cellular organisms → Bacteria → Acidobacteria	2151	Open in IMG/M
3300026514\|Ga0257168_1016660	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300026557\|Ga0179587_10497325	All Organisms → cellular organisms → Bacteria → Acidobacteria	800	Open in IMG/M
3300027570\|Ga0208043_1117044	Not Available	712	Open in IMG/M
3300027674\|Ga0209118_1043510	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300027674\|Ga0209118_1100169	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300027824\|Ga0209040_10296528	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300027842\|Ga0209580_10095662	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300027854\|Ga0209517_10635311	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300027855\|Ga0209693_10348470	Not Available	719	Open in IMG/M
3300027867\|Ga0209167_10744042	Not Available	535	Open in IMG/M
3300027869\|Ga0209579_10038156	All Organisms → cellular organisms → Bacteria	2594	Open in IMG/M
3300027894\|Ga0209068_10154521	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300027894\|Ga0209068_10210273	Not Available	1072	Open in IMG/M
3300027905\|Ga0209415_10037149	All Organisms → cellular organisms → Bacteria	6747	Open in IMG/M
3300027905\|Ga0209415_10074779	All Organisms → cellular organisms → Bacteria → Acidobacteria	3976	Open in IMG/M
3300027905\|Ga0209415_11147450	Not Available	501	Open in IMG/M
3300027908\|Ga0209006_10070150	All Organisms → cellular organisms → Bacteria	3124	Open in IMG/M
3300027908\|Ga0209006_10149607	All Organisms → cellular organisms → Bacteria	2050	Open in IMG/M
3300027910\|Ga0209583_10039221	All Organisms → cellular organisms → Bacteria → Acidobacteria	1618	Open in IMG/M
3300027911\|Ga0209698_10160142	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300027911\|Ga0209698_10196899	All Organisms → cellular organisms → Bacteria → Acidobacteria	1631	Open in IMG/M
3300028792\|Ga0307504_10010150	All Organisms → cellular organisms → Bacteria → Acidobacteria	2106	Open in IMG/M
3300028906\|Ga0308309_11502700	Not Available	575	Open in IMG/M
3300029636\|Ga0222749_10019360	All Organisms → cellular organisms → Bacteria	2804	Open in IMG/M
3300030738\|Ga0265462_11776590	Not Available	590	Open in IMG/M
3300031231\|Ga0170824_112712480	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	626	Open in IMG/M
3300031234\|Ga0302325_10117158	All Organisms → cellular organisms → Bacteria	4908	Open in IMG/M
3300031446\|Ga0170820_10533712	Not Available	744	Open in IMG/M
3300031708\|Ga0310686_104561293	All Organisms → cellular organisms → Bacteria	6064	Open in IMG/M
3300031708\|Ga0310686_107169259	All Organisms → cellular organisms → Bacteria → Acidobacteria	12519	Open in IMG/M
3300031708\|Ga0310686_109158869	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300031708\|Ga0310686_112579981	All Organisms → cellular organisms → Bacteria → Acidobacteria	1588	Open in IMG/M
3300031708\|Ga0310686_114020021	Not Available	513	Open in IMG/M
3300031708\|Ga0310686_118016489	All Organisms → cellular organisms → Bacteria → Acidobacteria	1459	Open in IMG/M
3300031823\|Ga0307478_10356416	All Organisms → cellular organisms → Bacteria → Acidobacteria	1206	Open in IMG/M
3300031823\|Ga0307478_10540202	All Organisms → cellular organisms → Bacteria → Acidobacteria	973	Open in IMG/M
3300031962\|Ga0307479_10311446	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300031962\|Ga0307479_11080289	Not Available	769	Open in IMG/M
3300032160\|Ga0311301_11376298	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300032160\|Ga0311301_11814163	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300032174\|Ga0307470_10092342	All Organisms → cellular organisms → Bacteria	1707	Open in IMG/M
3300032783\|Ga0335079_11981276	Not Available	561	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.27%
Host-Associated	Host-Associated	0.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.88%
Aquatic	Environmental → Aquatic	31.39%
Plants	Host-Associated → Plants	0.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.15%
Freshwater	Environmental → Aquatic → Freshwater	20.44%
Sediment	Environmental → Aquatic → Sediment	10.95%
Peat	Environmental → Terrestrial → Peat	0.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.95%
Loam	Environmental → Terrestrial → Soil → Loam	8.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.65%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.55%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	16.06%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.19%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.46%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.73%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.44%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	16.06%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	10.95%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.49%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.84%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.11%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.46%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.46%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.46%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.73%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.73%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.73%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100546442	3300000567	Peatlands Soil	METFMSGAMVIEGALLSFLLALCMTWLGLNGLFRLMPVTAKIVQPIQLVANGQIGNRQRDAA*
JGIcombinedJ26739_1015432631	3300002245	Forest Soil	MDTFMNGAIVIEAALLSFLLALCMTWLGLDGLFRLMPATAKIVQPIRLVPNGQIGDRQSNAA*
Ga0058897_108070591	3300004139	Forest Soil	AMETFMNGAMVIEGGLLSFLLAPWMTWAGLRGLFRLLPVTSAPAAGRVVQPIQLIAGRQQGNRQRDAA*
Ga0062386_1000379564	3300004152	Bog Forest Soil	METFMNGAMVVEGALLSFLLALWMTWLGLNGLFRLMPATTRPVMRRLAQPVRFLANQQ*
Ga0070735_104575612	3300005534	Surface Soil	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIQLFANGQIGNRQRDAS*
Ga0070731_100065763	3300005538	Surface Soil	METFMSGAMVIEGALLSFLLALWMTWMGLRGLFRLMPVTGSPNAGRTVQPIRFAVNRQQENRRRDAA*
Ga0070733_102820792	3300005541	Surface Soil	METFMSGAMVIEAALLSFLLALWMTWLGLRGLFRLMPVTGAPATGGTVHPILFVAGRPQGNRQRNAA*
Ga0070733_109582642	3300005541	Surface Soil	METFMSGAMVIEGALLSFLVALWLTWLVLRGLFRLMPSASRPVTSRIVQQIRFVANPQEANRRRDTA*
Ga0070732_105009321	3300005542	Surface Soil	METFLSEAIVIEGALLSFLLALCMTWLGLHGLFRLMPVTRKIVQPIRLVADGQIGNRQRDAA*
Ga0070763_101643422	3300005610	Soil	METFMNGAMVIEGGLLSFLLALWMTWTGLRGLFRLLPATSAPAVDRVVQPIHLNASRQQSNRQRDAA*
Ga0075023_1001609391	3300006041	Watersheds	METFLSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTTKIVQPVRLVADGQIGNRQRDAA*
Ga0075023_1004827892	3300006041	Watersheds	METFMNGAMVIEGGLLSFLLALWMTWAGLRGLFRLLPVTIAPAAGRVVQPIQLIAGRQQGNRQRDAA*
Ga0075028_1000136263	3300006050	Watersheds	METFMSEAIIIEGALVSVLLALWMTWLALRGLFWLMPSKGRTPQPIRFFANREQGNRRRDAA*
Ga0075028_1002992262	3300006050	Watersheds	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTRKIVQPIRLVADGQIGNRQRDAA*
Ga0075028_1003161542	3300006050	Watersheds	METFMNGAMVIEGGLLSFLLALWMTWAGLRGLFRLLPVTSAPAAGRVVQPIQLIAGRQQGNRQRDAA*
Ga0075028_1005387951	3300006050	Watersheds	METFMSGAMVIEGALLSFLLALCMTWLGLSGLFRLMPATARLVQPIRLVASGQEENRRHYAA*
Ga0075029_1008082682	3300006052	Watersheds	METFMNGAVVIEGAMLSFLLALWMTWIGLRGLFRLMPATSSQAASRIVQPIRFVANRQ*
Ga0075018_106709572	3300006172	Watersheds	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTRKIVQPIRLVADGQIGNRQHDAA*
Ga0070765_1000386984	3300006176	Soil	METFMSGARVVEGALLSFVLALGMTWFGLRGLFRLMPVTARPATSPAAQPMRFVANGLEASRRSTAA*
Ga0070765_1012890412	3300006176	Soil	METFLSEAVVVEGALLSFLLALWLTWMGLRGLFRLMPVMAQPITVRIVQPIRFFAHRPEANRRSNAA*
Ga0075021_100593632	3300006354	Watersheds	METFMNSAMVVEGALLSFLLALWMTWLGLNGLFRLLPATVRPIQSRLARPVIFAASRR*
Ga0075021_102567731	3300006354	Watersheds	ARLVPFLSAKKARNAMETFMSEAIIIEGALISVLLALWMTWLALRGLFWLMPSKGRTPQPIRFFANREQGNRRRDAA*
Ga0066797_12683702	3300006864	Soil	MESFMNGAMVIEGALLSFLLALWMTWLGLRGLFQLMPVTIRPVTVRSLTSPSVQPIRFVANRREADRRRDAA*
Ga0116221_12185821	3300009523	Peatlands Soil	METFMNGAMVIEAALLSFLLALWMTWLGLRGLFRLMPVRSSLATGRIIQPIRFVAKRQQGNRRRDAA*
Ga0136449_10002350110	3300010379	Peatlands Soil	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVANGQIGNRQRDAA*
Ga0136449_1005521422	3300010379	Peatlands Soil	METFLSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVANGQIGNRQRDAA*
Ga0136449_1008907042	3300010379	Peatlands Soil	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIQLVANGQIGDRQRDAA*
Ga0136449_1019141082	3300010379	Peatlands Soil	METFVSGAIVIEGALLSFLLALCMTWLGLHGLFRLMPVTRKIVQPIRLVADGPIGNRQRDAA*
Ga0150983_124522071	3300011120	Forest Soil	METFMNGAMVIEGGLLSFLLAPWMTWAGLRGLFRLLPVTSAPAAGRVVQPIQLIAGRQQGNRQRDAA*
Ga0137392_101747642	3300011269	Vadose Zone Soil	METFMSGAMVIEGALLSFLLALWMTWLGLRGLFHLMPATSQSAQPIRFAANQQQGNRRSHAA*
Ga0137391_103681042	3300011270	Vadose Zone Soil	METFMSGAMVIEGALFSFLLALWMTWLGLRGLFHLMPATSRSAQPIRFAANRQQGNRRRHAA*
Ga0137391_104125141	3300011270	Vadose Zone Soil	METFMSGAMVIEGALLSFLLALWMTWLVLRGLFRLMPGTSRPPASRIVQPIRFVATEQR
Ga0137391_108258391	3300011270	Vadose Zone Soil	METFMSAAMVVEGALLSFLLALWMAWMGLRGLFRLMPVMVRPVTSRIVQPIRFVANRQEPNRRSDAA*
Ga0120118_10573722	3300012010	Permafrost	MESFMSGAMVIEGALLSFLLALWMTWLGLCGLFQLMPVTIRPVTVRSLTSPSVQPIRFVANRREADRRRDAA*
Ga0137363_110379092	3300012202	Vadose Zone Soil	AMETFMSGAMVIEGAMLSFLLALWMTWIALRGLFRLMPVTSNPVSDHTFQPIRFVANRQQGNRRRNAA*
Ga0137384_108868472	3300012357	Vadose Zone Soil	SGAMVIEGAMLSFLLALWMTWLVLRGLFRLMPVTSNPITDRTFQPIRLVANRQQGDRRRDAA*
Ga0137360_119021451	3300012361	Vadose Zone Soil	METFMSGAMVIEGAMLSFLLALWMTWIALRGLFRLMPVTSNPVSDHTFQPIRFVANRQQGNRRRDAA*
Ga0137390_108768811	3300012363	Vadose Zone Soil	METFMSGAMVIEGALLSFLLALWMTWLGLRGLFHLMPATSRSAQPIRFAENQQQGNRGRHAA*
Ga0137390_112800061	3300012363	Vadose Zone Soil	MVIEGAMLSFLLALWMTWLVLRGLFRLMPVTSTPVTDHTFQPIRFVANRQQGNRQRDAA*
Ga0181523_103266112	3300014165	Bog	METFMSGAIAIEGALLSFLLALCMTWLALDGLFRLMPGFSRPVTRRLTPPVRLVANQR*
Ga0182024_100637584	3300014501	Permafrost	METFMSRAMVIEGALLSFLLALWVTWLGLCGLFRLMPATSGPAIGHTVQPIRFAPNRQQGNRRRDAA*
Ga0181505_104477022	3300016750	Peatland	AAMETFMSGAIAIEGALLSFLLALCMTWLALDGLFRLMPGFSRPVTRRLTPPVRLVANQR
Ga0187802_100014704	3300017822	Freshwater Sediment	METFMNGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIQLVAGREMGTRRRDAA
Ga0187802_100109202	3300017822	Freshwater Sediment	METFMNGAMVIEGALFSFLLGLCMTWLGLHGLFRLMPATAKIVQPIRLVAEGRDANRQSHAA
Ga0187818_100059312	3300017823	Freshwater Sediment	METFMNGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVADRQVANRQSNAA
Ga0187818_100251202	3300017823	Freshwater Sediment	METFMNAAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIQLVAGREMGTRRRDAA
Ga0187818_101471492	3300017823	Freshwater Sediment	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVANGQIGNRQRDAA
Ga0187824_100046613	3300017927	Freshwater Sediment	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIQLVANGQIGNRQRDAS
Ga0187824_100184842	3300017927	Freshwater Sediment	METFMNGAMVIEGGLLSFLLALWMTWVALGGLFRMLPSTSAPAAGRVIQPIQLMASRQQENRQRDAA
Ga0187806_10515822	3300017928	Freshwater Sediment	METFMNGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVAGREMGTRRRDAA
Ga0187806_12604382	3300017928	Freshwater Sediment	METFISGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVANGQIGNRQRDAA
Ga0187825_100075673	3300017930	Freshwater Sediment	METFMNGAMVIEGGLLSFLLALWMTWVALGGLFRMLPSTSAPAAGRVIQPIQLMASRHQENRQRDAA
Ga0187825_102805462	3300017930	Freshwater Sediment	METFMSGAMVIEGALFSFLLGLCMTWLGLHGLFRLMPATAKIVQPIRLVAEGHEANRQSHAA
Ga0187801_100106372	3300017933	Freshwater Sediment	MESFMNGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVADRQVANRQSNAA
Ga0187801_103580662	3300017933	Freshwater Sediment	METFMNGAMVIEGALFSFLLGLCMTWLGLHGLFRLMPATAKIVQPIRLVAEGREANRQSHAA
Ga0187801_104397691	3300017933	Freshwater Sediment	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVANGQIG
Ga0187821_100044054	3300017936	Freshwater Sediment	MSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIQLFANGQIGNRQRDAS
Ga0187817_100595342	3300017955	Freshwater Sediment	METFMNAAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIQLVAGKEMGTRRRDAA
Ga0187817_106219272	3300017955	Freshwater Sediment	METFMNGAMVIEGALFSFLLGLCMTWLGLHGLFRLMPATAKIVQPIRLVAEGHEANRQSHAA
Ga0187782_107441791	3300017975	Tropical Peatland	METLMNTAMVIEGALLSFLLALWMTWLALRCLFRLMPVTTQVAQPIRFVANRHRQAA
Ga0187822_100089743	3300017994	Freshwater Sediment	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIQLFANGQIGNRQRDAS
Ga0187816_100668262	3300017995	Freshwater Sediment	METFMNGAMVIEGALFSFLLGLCMTWLGLHGLFRLMPATAKIVQPIRLVAEGHESSRQSHAA
Ga0187804_101232541	3300018006	Freshwater Sediment	KRGPAMETFMNAAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIQLVAGREMGTRRRDAA
Ga0187804_101887131	3300018006	Freshwater Sediment	MNGAMVIEGALFSFLLGLCMTWLGLHGLFRLMPATAKIVQPIRLVAEGRDANRQSHAA
Ga0187805_100117262	3300018007	Freshwater Sediment	METFMNGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIQLVAGRAMGTRRRDAA
Ga0187871_103715542	3300018042	Peatland	METFMSGAMVIEGALLSFLLALWTTWLGLRGLFRLMPATSSPAAGRTVQPIRFVPNRQQGNRRRDAA
Ga0187771_105765342	3300018088	Tropical Peatland	METFTSRAMEVVAATLLSFLLALWVTWLGLRGLFHLLPVNTRIVQPIHNAANRRRS
Ga0210403_105281402	3300020580	Soil	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIQLVANGQIGDRQRDAA
Ga0210403_108604941	3300020580	Soil	METFMNGAVVIEGTLLSFLVALWMTWLGLRGLFRLMPATSQSVQTIRFAANRQQGNRGREAA
Ga0210399_101272872	3300020581	Soil	METFMNGAMVIEGGLLSFLLALWMTWAGLRGLFRLLPVTSAPAAGRVVQPIQLIAGRQQGNRQRDAA
Ga0210399_106615892	3300020581	Soil	METFMSGARVVEGALLSFVLALGMTWFGLRGLFRLMPVTARPATSPAAQPMRFVANGLEASRRSTAA
Ga0210399_113948671	3300020581	Soil	METFMSEAMVIEGALLSFLLALCMTWLGLSGLFRLMPITSRIVQPFRLEPNRQPEDQQHHHA
Ga0210395_108505541	3300020582	Soil	METFMNGAMVIEGALLSFLLALCMTWLGLHGLFRLMPGTAKIVQPIRLVADGREANRQSHAA
Ga0210401_100010589	3300020583	Soil	METFMNGAMVIEGGLLSFLLALGMTWIGLHGLFRLMPVTSARAAGRVVQPVQIIARRQQGNRQRDAA
Ga0210404_100462822	3300021088	Soil	METFMNGAMVIEGGLLSFLLALWMTWTGLRGLFRLLPATSAPALDRVVQPIHLNASRQQSNRQRDAA
Ga0210406_112924531	3300021168	Soil	METFMNGAMVIEGALLSFLVALWMTWLGLRGLFRLMPATSQSVRSVRFAANQ
Ga0210400_103154841	3300021170	Soil	METFMNGAIVIETALLSFLLALCMTWLGLHGLFRLLPATAKIVQPVRLVSNQQSGDRRTSAA
Ga0210405_107434352	3300021171	Soil	METFMNGAMVIEGGLLSFLLALWMTWAGLRGLFRLLPVTIAPAAGRVVQPIQLIAGRQQGNRQRDAA
Ga0210408_100182242	3300021178	Soil	METFMSSAMVIEAALLSFLLALWMTWLTLRGLFLLMPVTRRPFTGHIVQPIQLVANREQGHRRRDAA
Ga0210408_105394511	3300021178	Soil	IEGGLLSFLLALWMTWAGLRGLFRLLPVTSAPAAGRVVQPIQLIAGRQQGNRQRDAA
Ga0210408_109870091	3300021178	Soil	MENFMSGAMVIEGALLSFLLALWMTWLALRGLFRLMPVATRPAATCVVPPIRLVANRQRDAA
Ga0210396_116938691	3300021180	Soil	METFMNGAMMIEGAMLSFLLALWMTWIGLRGLFRLMPATSSPAAGRIVQPIRFVANRQQGNRRRDAA
Ga0210383_113762241	3300021407	Soil	METFMSGAMVIEAVLLSFLLALWMAWLGLRGLFRLMPATSQTFQPIRFATSRQQGNRRSH
Ga0210394_105411312	3300021420	Soil	METFLSDAMVIEGALLSFLLALCMTWLGLSGLFRLLPGTARIVQPIRLVADSQEANRQSGAA
Ga0210394_112667572	3300021420	Soil	METFMDGAMVIEGALFSFLLALCMTWLGLHGLFRLMPATAKIVQPIRLVAGSQESNRQSHAA
Ga0210394_115104111	3300021420	Soil	METFMNGAMVIEGAMLSFLLALWMTWTGLRGLFRLMPATSSPAAGRIVQPIRFVANRQQGNRR
Ga0210391_108697691	3300021433	Soil	HFFVRRKRGPAMETFMDGAMVIEGALFSFLLALCMTWLGLHGLFRLMPATAKIVQPIRLVAGSQESNRQSHAA
Ga0210391_114950421	3300021433	Soil	METFMNGAMVIEGALLSFLLALCMTWLGLHGLFRLMPGTAKIVQPIRLVADGREANRQGHAA
Ga0210402_108685691	3300021478	Soil	METFMSGATVIEGALLSFVLALGMTWFGLRGLFRLMPVTARPATSPAAQPMRFVANGLEASRRSTAA
Ga0210410_110462032	3300021479	Soil	METFMNGAMVIEGALLSFLVALWMTWLGLRGLFRLMPATSQSVRPVRFAANQ
Ga0210409_1000200415	3300021559	Soil	METFMNGAMVIEGGLLSFLLAPWMTWAGLRGLFRLLPVTSAPAAGRVVQPIQLIAGRQQGNRQRDAA
Ga0210409_100074382	3300021559	Soil	METFMNGAMMIEGAMLSFLLALWMTWIGLRGLFRLMPATSSPAAGRIVQPIRFGANRQQGNRRRDAA
Ga0213853_109545202	3300021861	Watersheds	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTRKIVQPIRLVADGQIGNRQHDAA
Ga0224563_10097621	3300022731	Soil	METFMNGAMVIEATLLSFLLALWITWMGLRGLFRLIPATIRVVQPIRFVAAPRQANRRLDAA
Ga0228598_10079391	3300024227	Rhizosphere	METFMNGAMVIEATLLSFLLALWITWMGLRGLFRLIPATIRVVQPIRFVAAPRQAN
Ga0257168_10166602	3300026514	Soil	METFMSGAMVIEGALLSFLLALWMTWLVLRGLFRLMPGTSRPPASRIVQPIRFVATEQRANRRLDAA
Ga0179587_104973251	3300026557	Vadose Zone Soil	METFMNGAMVIEGALLSFLLALCMTWLGLNGLFRLMPATARRVTSRLAEPVRFAAN
Ga0208043_11170442	3300027570	Peatlands Soil	METFMSGAMVIEGALLSFLLALCMTWLGLNGLFRLMPVTAKIVQPIQLVANGQIGNRQRDAA
Ga0209118_10435102	3300027674	Forest Soil	MENFVSGAMVIEGALLSFLLALWMTWLALRGLFRLLPVATRPAATCVIPPIRLVANRQRDAA
Ga0209118_11001692	3300027674	Forest Soil	METFLSRAMVIEGALLSFLLALCMTWLGLHGLFRLMPATTKIVQPIQLVANGQIGNRRRDAA
Ga0209040_102965281	3300027824	Bog Forest Soil	GAMVVEGALLSFLLALWMTWLGLNGLFRLMPATTRPVMRRLAQPVRFLANQQ
Ga0209580_100956622	3300027842	Surface Soil	METFLSEAIVIEGALLSFLLALCMTWLGLHGLFRLMPVTRKIVQPIRLVADGQIGNRQRDAA
Ga0209517_106353111	3300027854	Peatlands Soil	METFLSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVANGQI
Ga0209693_103484702	3300027855	Soil	METFMNGAMVIEGGLLSFLLALWMTWTGLRGLFRLLPATSAPAVDRVVQPIHLNASRQQSNRQRDAA
Ga0209167_107440421	3300027867	Surface Soil	GTFMSEAMVIEAALLSFLLALWMTRLVLRGLFWLMPVTTGPGTARAVQPIRFAAKGQHSNQRLA
Ga0209579_100381562	3300027869	Surface Soil	METFMSGAMVIEGALLSFLLALWMTWMGLRGLFRLMPVTGSPNAGRTVQLIRFAVNRQQENRRRDAA
Ga0209068_101545211	3300027894	Watersheds	VLLALWMTWLALRGLFWLMPSKGRTPQPIRFFANREQGNRRRDAA
Ga0209068_102102732	3300027894	Watersheds	METFMNSAMVVEGALLSFLLALWMTWLGLNGLFRLLPATVRPIQSRLARPVIFAASRR
Ga0209415_100371493	3300027905	Peatlands Soil	METFMNGAMVIEAALLSFLLALWMTWLGLRGLFRLMPVRSSLATGRIIQPIRFVAKRQQGNRRRDAA
Ga0209415_100747794	3300027905	Peatlands Soil	METFLSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVANGQIGNRQRDAA
Ga0209415_111474501	3300027905	Peatlands Soil	IEGALLSFLLALCMTWLGLHGLFRLMPVTRKIVQPIRLVADGPIGNRQRDAA
Ga0209006_100701502	3300027908	Forest Soil	METFMSGATVVEGALLSFVLALGMTWFGLRGLFRLMPVTARPATSPAAQPMRFVANGLEASRRSTAA
Ga0209006_101496072	3300027908	Forest Soil	METFMSGAMVVEGALLSFLLALWMTWMGLRGLFRLMPVMAQPVTGRIVQPIRFFAKRQELNRRRNAA
Ga0209583_100392211	3300027910	Watersheds	METFLSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTTKIVQPVRLVADGQIGNRQRDAA
Ga0209698_101601422	3300027911	Watersheds	METFMSGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTRKIVQPIRLVADGQIGNRQRDAA
Ga0209698_101968992	3300027911	Watersheds	METFISGAMVIEAALLSFLLALWMTWTCLRGLFRLMPATSRPATGRTVQPIRFVANPQQGNRQSHAA
Ga0307504_100101502	3300028792	Soil	METFMSGAMVVEGALLSFLLALWMTWLGLRGLFRLMPATVRPVTTRIVQPIRFVANRPEGSRRRGAA
Ga0308309_115027001	3300028906	Soil	METFLSEAVVVEGALLSFLLALWLTWMGLRGLFRLMPVMAQPITVRIVQPIRFFAHRPEANRRSNAA
Ga0222749_100193602	3300029636	Soil	METFMNGAMMIEGAMLSFLLALWMTWTGLRGLFRLLPATSAPALDRVVQPIHLNASRQQSNRQRDAA
Ga0265462_117765901	3300030738	Soil	TMETLMNGAMVVEGALLSFLLALWMTWLGLNGLFRLMPATSRPVAGRVTQPARLAANQQ
Ga0170824_1127124802	3300031231	Forest Soil	MNTLMSGAMAVEGALLSFPLALWMTWLALGGLFRLMPAISHPVTRRLAPPVRQIVK
Ga0302325_101171585	3300031234	Palsa	METFMSAAMVIEGVMLSFLLALWMTWLALRGLFRLMPVTTQVLQPIRFVANRQIANRRRETA
Ga0170820_105337121	3300031446	Forest Soil	RGSAMDTFMNGAMVIEGALLSFLLALWMTWLGLRGLFRLMPATSQSVQRIRFAATQQQGNRRREVA
Ga0310686_1045612932	3300031708	Soil	METFMNGAMVIEGALLSFLLALCMTWLGLHGLFRLMPVTAKIVQPIRLVADSEEPNRRRNAA
Ga0310686_1071692595	3300031708	Soil	METFMDGAMVIEGALFSFLLALCMTWLGLHGLFRLMPATAKIVQPIRLVAGRQDSNRQSHAA
Ga0310686_1091588692	3300031708	Soil	METFMSGAMVIEGALLSFLLAVWMTWLGLRGLFLLLPATNRPVASGIVQPTQFVANRQ
Ga0310686_1125799812	3300031708	Soil	METFMNGAMVIEAALLSFLLALWMTWLGLCGLFRLMPVMSSPAAGRIVQPIRFVVNR
Ga0310686_1140200211	3300031708	Soil	KRGHAMETFLSGAMVIEGALLSFLLALSMTWLGLHGLFRLMPVTAKIVQPIRLIANGQIGNRERDAA
Ga0310686_1180164892	3300031708	Soil	METFMSGVMVIEGALLSFLLALWMTWIGLRGLFRLMPATSSPATRHVGQPIRLVANRQVGNRQRDAA
Ga0307478_103564162	3300031823	Hardwood Forest Soil	MDTFMNGAIVIETALLSFLLALCMTWLGLHGLFRLLPATAKLVQPVRLVSNRQSGDRRTSAA
Ga0307478_105402021	3300031823	Hardwood Forest Soil	METFMNGAIVVETALLSFLLALCMTWLGLHGLFRLLPVTAKMVQPVRLVSNR
Ga0307479_103114461	3300031962	Hardwood Forest Soil	MQTFMNGAMVIEGGLLSFLLALGMTWIGLHGLFRLMPVTSARAAGRVVQPVQIIARRQQGNRQRDAA
Ga0307479_110802892	3300031962	Hardwood Forest Soil	MESFMSGAMVIEGALLSFLLALWMTWIALRGLFRLMPVTRRPFTGHIVQPVHFVTNRQESIRRRDAA
Ga0311301_113762982	3300032160	Peatlands Soil	METFVSGAIVIEGALLSFLLALCMTWLGLHGLFRLMPVTRKIVQPIRLVADGPIGNRQRDAA
Ga0311301_118141631	3300032160	Peatlands Soil	METFMNGAMVIEGALLSFLLALWMTWLGLRGLFRLMPVRSSLATGRIIQPIRFVAKLHQ
Ga0307470_100923422	3300032174	Hardwood Forest Soil	MEPILNGTIVLEGALLSFMLALWITWLALRGLFRLMPLTSRPAAGRVTQHRRGLAQQQRA
Ga0335079_119812762	3300032783	Soil	METFMNAAMVIEGGLLSFLLALWMTWLALRGLFRLMPVTTQVIQPIRFVVKGQFANRRREAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056855

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences