Metagenome / Metatranscriptome Family F056832

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056832
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	62 residues
Representative Sequence	LGIVEVPKSEAEVSADLRDEADRINNLAHALADLFGRKVVVVWPDDKEVVVEPRPELRLDG
Number of Associated Samples	97
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	65.69 %
% of genes near scaffold ends (potentially truncated)	29.93 %
% of genes from short scaffolds (< 2000 bps)	93.43 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.562 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.438 % of family members)
Environment Ontology (ENVO)	Unclassified (54.015 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (72.263 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.21% β-sheet: 8.99% Coil/Unstructured: 61.80%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF00072	Response_reg	27.74
PF16868	NMT1_3	2.92
PF02954	HTH_8	1.46
PF10098	DUF2336	0.73
PF13340	DUF4096	0.73
PF00872	Transposase_mut	0.73
PF17200	sCache_2	0.73
PF02518	HATPase_c	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.56 %
Unclassified	root	N/A	20.44 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.56 %
Unclassified	root	N/A	20.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.56 %
Unclassified	root	N/A	20.44 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.45 %
Unclassified	root	N/A	20.44 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.73 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.73 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	44.53 %
Unclassified	root	N/A	20.44 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.73 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.73 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	42.34 %
Unclassified	root	N/A	20.44 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.73 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.73 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	41.61 %
Unclassified	root	N/A	20.44 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.73 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.73 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	40.15 %
Unclassified	root	N/A	20.44 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	0.73 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.73 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.44 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	18.98 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1.46 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.46 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.73 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.73 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.44 %
Bradyrhizobium sp. G22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	17.52 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.46 %
Bradyrhizobium sp. 6(2017)	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	0.73 %
Bradyrhizobium japonicum SEMIA 5079	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum → Bradyrhizobium japonicum SEMIA 5079	0.73 %
unclassified Polyangiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae	0.73 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	0.73 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.73 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.44 %
Bradyrhizobium sp. G22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	17.52 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.46 %
Polyangiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	0.73 %
Bradyrhizobium sp. 6(2017)	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	0.73 %
Bradyrhizobium japonicum SEMIA 5079	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum → Bradyrhizobium japonicum SEMIA 5079	0.73 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	0.73 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.73 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459015\|G14TP7Y02IL8RI	Not Available	642	Open in IMG/M
3300004114\|Ga0062593_103280601	Not Available	519	Open in IMG/M
3300004157\|Ga0062590_100391211	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300005339\|Ga0070660_101318484	Not Available	613	Open in IMG/M
3300005343\|Ga0070687_100059655	All Organisms → cellular organisms → Bacteria → Proteobacteria	2010	Open in IMG/M
3300005344\|Ga0070661_100256180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1352	Open in IMG/M
3300005345\|Ga0070692_10089551	All Organisms → cellular organisms → Bacteria → Proteobacteria	1670	Open in IMG/M
3300005355\|Ga0070671_100527774	Not Available	1017	Open in IMG/M
3300005356\|Ga0070674_100350844	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300005364\|Ga0070673_100413211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1208	Open in IMG/M
3300005364\|Ga0070673_100459797	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300005441\|Ga0070700_100067768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2268	Open in IMG/M
3300005455\|Ga0070663_101051011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	710	Open in IMG/M
3300005455\|Ga0070663_101761603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	555	Open in IMG/M
3300005456\|Ga0070678_101870027	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300005459\|Ga0068867_100427781	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300005459\|Ga0068867_100855468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	815	Open in IMG/M
3300005459\|Ga0068867_101552494	Not Available	618	Open in IMG/M
3300005543\|Ga0070672_101051052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	723	Open in IMG/M
3300005544\|Ga0070686_101911152	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300005548\|Ga0070665_100649870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1068	Open in IMG/M
3300005548\|Ga0070665_100725861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1007	Open in IMG/M
3300005615\|Ga0070702_101636152	Not Available	534	Open in IMG/M
3300005617\|Ga0068859_100276669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1771	Open in IMG/M
3300005719\|Ga0068861_101419009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	679	Open in IMG/M
3300005843\|Ga0068860_102603503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	525	Open in IMG/M
3300006038\|Ga0075365_10900121	Not Available	624	Open in IMG/M
3300006046\|Ga0066652_101416000	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300006173\|Ga0070716_100905760	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300006578\|Ga0074059_10008646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	924	Open in IMG/M
3300006580\|Ga0074049_12868141	Not Available	507	Open in IMG/M
3300006604\|Ga0074060_11980834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	540	Open in IMG/M
3300006881\|Ga0068865_100838540	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300006893\|Ga0073928_10407080	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	994	Open in IMG/M
3300006953\|Ga0074063_13825443	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300009098\|Ga0105245_12323544	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300009101\|Ga0105247_11140615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	617	Open in IMG/M
3300009176\|Ga0105242_10709311	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300009176\|Ga0105242_12621594	Not Available	553	Open in IMG/M
3300009545\|Ga0105237_10293931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1627	Open in IMG/M
3300009545\|Ga0105237_11742322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	630	Open in IMG/M
3300010375\|Ga0105239_12333404	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300010403\|Ga0134123_11072218	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300011107\|Ga0151490_1076596	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300011119\|Ga0105246_10682695	All Organisms → cellular organisms → Bacteria → Proteobacteria	898	Open in IMG/M
3300011119\|Ga0105246_10819856	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300012212\|Ga0150985_107397091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	512	Open in IMG/M
3300012212\|Ga0150985_119847441	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300012469\|Ga0150984_119983050	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300012885\|Ga0157287_1049494	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300012941\|Ga0162652_100086694	Not Available	549	Open in IMG/M
3300012951\|Ga0164300_10703009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300012957\|Ga0164303_11452381	Not Available	516	Open in IMG/M
3300012960\|Ga0164301_10441464	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300012960\|Ga0164301_10800784	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300012961\|Ga0164302_10872728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	687	Open in IMG/M
3300012984\|Ga0164309_10775436	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300012984\|Ga0164309_11208079	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300012984\|Ga0164309_11711495	Not Available	539	Open in IMG/M
3300012985\|Ga0164308_11135811	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300012986\|Ga0164304_11131696	Not Available	628	Open in IMG/M
3300012988\|Ga0164306_10106122	All Organisms → cellular organisms → Bacteria	1842	Open in IMG/M
3300013296\|Ga0157374_12166151	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300013297\|Ga0157378_11027166	Not Available	859	Open in IMG/M
3300013297\|Ga0157378_12024974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	626	Open in IMG/M
3300013297\|Ga0157378_12481073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	570	Open in IMG/M
3300013306\|Ga0163162_11297891	Not Available	827	Open in IMG/M
3300013306\|Ga0163162_12541355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	589	Open in IMG/M
3300013306\|Ga0163162_12883015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	553	Open in IMG/M
3300013308\|Ga0157375_10689947	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300013308\|Ga0157375_12534751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	612	Open in IMG/M
3300014325\|Ga0163163_10548690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1218	Open in IMG/M
3300014326\|Ga0157380_10114910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2269	Open in IMG/M
3300014326\|Ga0157380_11151871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	817	Open in IMG/M
3300014969\|Ga0157376_10901301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	902	Open in IMG/M
3300014969\|Ga0157376_12227247	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300014969\|Ga0157376_13035818	Not Available	508	Open in IMG/M
3300015373\|Ga0132257_101988339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	749	Open in IMG/M
3300015373\|Ga0132257_102977431	Not Available	617	Open in IMG/M
3300015374\|Ga0132255_103040228	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300015374\|Ga0132255_103537478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	664	Open in IMG/M
3300017792\|Ga0163161_10440527	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300017792\|Ga0163161_11242018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	646	Open in IMG/M
3300018073\|Ga0184624_10234655	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300018432\|Ga0190275_10293069	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300018469\|Ga0190270_10098112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2235	Open in IMG/M
3300018469\|Ga0190270_10884791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	909	Open in IMG/M
3300018469\|Ga0190270_12272269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	603	Open in IMG/M
3300018476\|Ga0190274_10202098	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300018476\|Ga0190274_11121389	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300018476\|Ga0190274_11590925	Not Available	746	Open in IMG/M
3300018481\|Ga0190271_10267212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1753	Open in IMG/M
3300018481\|Ga0190271_10384034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1494	Open in IMG/M
3300018481\|Ga0190271_10804555	Not Available	1064	Open in IMG/M
3300018481\|Ga0190271_11428749	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300018481\|Ga0190271_12305935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	643	Open in IMG/M
3300019362\|Ga0173479_10502761	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300021403\|Ga0210397_10776908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	739	Open in IMG/M
3300021475\|Ga0210392_10519213	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300022557\|Ga0212123_10722029	Not Available	610	Open in IMG/M
3300025315\|Ga0207697_10027921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2307	Open in IMG/M
3300025315\|Ga0207697_10060576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1574	Open in IMG/M
3300025893\|Ga0207682_10460682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	602	Open in IMG/M
3300025899\|Ga0207642_10014249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2928	Open in IMG/M
3300025900\|Ga0207710_10196919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	994	Open in IMG/M
3300025908\|Ga0207643_10151672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1390	Open in IMG/M
3300025918\|Ga0207662_10135611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1555	Open in IMG/M
3300025919\|Ga0207657_11357865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	535	Open in IMG/M
3300025926\|Ga0207659_11724492	Not Available	533	Open in IMG/M
3300025930\|Ga0207701_10148055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2082	Open in IMG/M
3300025930\|Ga0207701_10549413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	986	Open in IMG/M
3300025930\|Ga0207701_10962973	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300025937\|Ga0207669_10726158	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300025937\|Ga0207669_11170433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	651	Open in IMG/M
3300025938\|Ga0207704_10051975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2481	Open in IMG/M
3300025940\|Ga0207691_10254335	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300025941\|Ga0207711_11706339	Not Available	573	Open in IMG/M
3300025961\|Ga0207712_11869153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	538	Open in IMG/M
3300025972\|Ga0207668_11203861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	681	Open in IMG/M
3300026067\|Ga0207678_10736357	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300026067\|Ga0207678_11888474	Not Available	521	Open in IMG/M
3300026088\|Ga0207641_11809348	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	613	Open in IMG/M
3300026089\|Ga0207648_10073345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2983	Open in IMG/M
3300026089\|Ga0207648_11669298	Not Available	598	Open in IMG/M
3300026118\|Ga0207675_100582065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1121	Open in IMG/M
3300026121\|Ga0207683_10258721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1589	Open in IMG/M
3300026121\|Ga0207683_10440568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum → Bradyrhizobium japonicum SEMIA 5079	1201	Open in IMG/M
3300026142\|Ga0207698_11476377	Not Available	695	Open in IMG/M
3300028712\|Ga0307285_10249662	Not Available	504	Open in IMG/M
3300031057\|Ga0170834_108239623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	653	Open in IMG/M
3300031231\|Ga0170824_119332126	Not Available	775	Open in IMG/M
3300031231\|Ga0170824_123030132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1006	Open in IMG/M
3300031366\|Ga0307506_10106883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	926	Open in IMG/M
3300031366\|Ga0307506_10217935	Not Available	710	Open in IMG/M
3300031469\|Ga0170819_17058502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	565	Open in IMG/M
3300031854\|Ga0310904_11205813	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300032205\|Ga0307472_101471590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G22	664	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.20%
Environmental	Environmental	43.07%
Engineered	Engineered	0.73%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.20%
Terrestrial	Environmental → Terrestrial	40.88%
Aquatic	Environmental → Aquatic	2.19%
Solid Waste	Engineered → Solid Waste	0.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.12%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.63%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.46%
Roots	Host-Associated → Plants → Roots	1.46%
Sediment	Environmental → Aquatic → Sediment	0.73%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.73%
Grass	Engineered → Solid Waste → Grass	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.06%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.33%
Loam	Environmental → Terrestrial → Soil → Loam	5.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.38%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.19%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.73%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.73%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.73%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.73%
Composting	Engineered → Solid Waste → Grass → Composting	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.19%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.46%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.73%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.73%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.73%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.73%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.11%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.11%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	2.19%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.19%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.19%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.19%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.46%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.46%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.73%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.73%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.73%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.73%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.73%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4PV_04134830	2170459015	Switchgrass, Maize And Mischanthus Litter	LGIVEVPKSKPEVSADLRDEADRLVDLAHALADLFGRKAVLVWPDDKEVVVEPRPKPRLH
Ga0062593_1032806011	3300004114	Soil	LGIVEVPKSEAEVSADLRGKADRIDKLAHALADLFGRKVVVVWPDDKEVVVEPRPELRPDG*
Ga0062590_1003912112	3300004157	Soil	DFASGAKLGIVEVPKSEAEVSADLRDEADRINNLAHALADLFGRKVVVVWPDDKEVVVEPRPELRPDG*
Ga0070660_1013184841	3300005339	Corn Rhizosphere	LGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG*
Ga0070687_1000596553	3300005343	Switchgrass Rhizosphere	MARTETYQFWLGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG*
Ga0070661_1002561801	3300005344	Corn Rhizosphere	LGIVEVPKSKTRVLADLRTEADRIDKLAHALADHFGRKVVLAWPDDKEVVVEPRCEQRPDGTPLRSN*
Ga0070692_100895513	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MARTETYQFRLGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG*
Ga0070671_1005277742	3300005355	Switchgrass Rhizosphere	LGIVEVPKSEAEVSADLRDEAERIEALAHALADLFGRKAVLVWPDDKEVVVEPRPKPRLHR*
Ga0070674_1003508442	3300005356	Miscanthus Rhizosphere	VEVPKSKTYAPADLRTEADRLDDLVQALADHFGRKVVLVWPDDKEVVVEPRPELRPDG*
Ga0070673_1004132112	3300005364	Switchgrass Rhizosphere	MARTETYQFRLGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRPELKLDR*
Ga0070673_1004597972	3300005364	Switchgrass Rhizosphere	VEVPKSEAEVSADLRDEADRINNLAHALADLFGRKVVVVWPDDKEVVVEPRPELRPDG*
Ga0070700_1000677682	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG*
Ga0070663_1010510111	3300005455	Corn Rhizosphere	VPKSEAEVSADLRDEADRIDKLAHALADLFGRKVVVVWPDHKEVVVEPHPALRLDG*
Ga0070663_1017616031	3300005455	Corn Rhizosphere	VEVPKSKTQVPADLRTEADRLDDLVQALADHFGRKVVLVWPDDKEVVVEPRPELRLEG*
Ga0070678_1018700272	3300005456	Miscanthus Rhizosphere	APADLRTEADRLDDLVHALADHFGRKVVLMWPDDKEVVVEPRPKPRLDR*
Ga0068867_1004277813	3300005459	Miscanthus Rhizosphere	LGIVEVPKSEAEVSADLRDEADRINNLAHALADLFGRKVVVVWPDDKEVVVEPRPELRLDG*
Ga0068867_1008554681	3300005459	Miscanthus Rhizosphere	LGIVEVPKSKTQVPANLRTEADRLDDLVQALADHFGRKVVLVWPDDKEVVVEPRPELRLDG*
Ga0068867_1015524941	3300005459	Miscanthus Rhizosphere	MARTETYHFWLGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG*
Ga0070672_1010510522	3300005543	Miscanthus Rhizosphere	LGIVEVPKSEAEVSADLRDEADRINNLAHALADLFGRKVVVVWPDDKEVVVEPRPELRPDG*
Ga0070686_1019111522	3300005544	Switchgrass Rhizosphere	LGIVEVPKSEAEVSADLRDEADRINNLAHALADLFGRKVVVVWPDDKEVVIEPRPELRPDG*
Ga0070665_1006498704	3300005548	Switchgrass Rhizosphere	ITARTETYQFWLGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG*
Ga0070665_1007258613	3300005548	Switchgrass Rhizosphere	MTSANKSEAQVSPDLRDEADSIDDLAHALADHFGRKVLLVWPDDNEVVVEPRPEQWLDS*
Ga0070702_1016361522	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	FWLGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG*
Ga0068859_1002766691	3300005617	Switchgrass Rhizosphere	VEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAER
Ga0068861_1014190093	3300005719	Switchgrass Rhizosphere	LGIVEVPKSEAEVSADLRDEADRIDNLAHALADLFGRKVVVVWPDHKEVVVEPHPALRLDG*
Ga0068860_1026035032	3300005843	Switchgrass Rhizosphere	LGIVEVPKSEAEVSADLRDEADRINNLAHALADLFGRKVVVVWPDDKEEVVEPRPERRLDG*
Ga0075365_109001211	3300006038	Populus Endosphere	LGIVEVPKSEAEVSADLRDEADRIDKLAHALADLFGRKVVVVWPDDREVVVEPRPELRPDG*
Ga0066652_1014160001	3300006046	Soil	LGIVEVPKSKTQVPADLRTEAERLDDLVHALADHFGRKVVLVLPDDKEVVVEPRPALRLDG*
Ga0070716_1009057602	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VPKSKTQVPADSRTEADRLDDLVHALADHFGRRVVLVWPDDKELVVEPRHELRLDD*
Ga0074059_100086462	3300006578	Soil	LGIVEVPKSKTQVPDDLRTEADRLDDLVHALADHFGRKVVLVWPDDKEVVVEPRPKPRLDR*
Ga0074049_128681411	3300006580	Soil	LGIVEMPKSKPEVSADLRDEADRLVDLAHALADLFGRKAVLVWPDDKEVVVEPRPKPRLHR*
Ga0074060_119808342	3300006604	Soil	LGIVEVPKSKPEVSADLRDEADGLVDLAHALADLFGRKAVLVWPDDKEVVVEPRPKPRLHR*
Ga0068865_1008385402	3300006881	Miscanthus Rhizosphere	VEVPKSKTQVPADSRTEADRLDDLVHALADHFGRKVVLVWPDDKEVVVEPRPELRPDG*
Ga0073928_104070802	3300006893	Iron-Sulfur Acid Spring	VEVPKSKTQVPHDLRTEADRLDDLLHALADHFGRKVVLVWPDDKEVVVEPRPELRLDG*
Ga0074063_138254432	3300006953	Soil	LGIVEVPKAKIQVPADLRTEADRLDDLVHALADHFGRKVVLVWPDDKEVVVEPRPELRLDG*
Ga0105245_123235441	3300009098	Miscanthus Rhizosphere	LGTVEVPKSKTQVPANLRTEADRLDDLVQALADHFGRKVVLVWPDDKEVVVEPRPELKREG*
Ga0105247_111406151	3300009101	Switchgrass Rhizosphere	VEVSKSKTQVPADLRTDADRLDNLAHALADHFGRKVVLVWPDDKEVVVEPRTELRPDS*
Ga0105242_107093114	3300009176	Miscanthus Rhizosphere	LGIVEVPKSKPEVSADLRDEAERIDALARALADQFGRKVVVVWPDDTEEVVEPRPERRRDG*
Ga0105242_126215941	3300009176	Miscanthus Rhizosphere	LGIVEVPKSKPEVSADLRDEADRLVDLAHALADLFGRKAVLVWPDDKEEVFEPRPELRPHG*
Ga0105237_102939313	3300009545	Corn Rhizosphere	MALTAAYRFWLGGELGIVEVPKSEAEVSADQREEADGINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG*
Ga0105237_117423222	3300009545	Corn Rhizosphere	LGTVEVPKSKTQVPANLRTEADRLDDLVQALADHFGRKVVLVWPDDKEVVVEPRPELRLEG*
Ga0105239_123334041	3300010375	Corn Rhizosphere	LGIVEVPKSEAEVSADLRTEADRLDNLAHALADHFGRKVVLVWPDDKEVVVEPRTELRPDS*
Ga0134123_110722181	3300010403	Terrestrial Soil	SLWHSRRPTIFGSGAKLGIVEVQKSEAEVSADLRDEADRINNLAHALADLFGRKVVVVWPDDKEVVVEPRPELRPDG*
Ga0151490_10765962	3300011107	Soil	VEVPKSKTQVPADLRTEADRLDDLVHALADHFGRKVVLVWPDDKEVVVEPRPELRLDG*
Ga0105246_106826952	3300011119	Miscanthus Rhizosphere	MTSANKSEAQVSPDLRDEADSIDDLAHALADHFGRKVLLVWPDDNEVVVETRPEQWLDS*
Ga0105246_108198562	3300011119	Miscanthus Rhizosphere	LGIVEVPKSEAEVSADLRDEADRIDKLAHALADLFGRKVVVVWPDDKEVVVEPRPELRPDG*
Ga0150985_1073970911	3300012212	Avena Fatua Rhizosphere	LGIVEVPKSKPEASADLRDEAERIDALARALADQFGRKVVVVWPDDEEEVIEPRPALRPDG*
Ga0150985_1198474411	3300012212	Avena Fatua Rhizosphere	EVPKSKPEVSADLRDEAEKIEALARALADLFGRKAVLVWPDDKEEVFEPRPELRPHG*
Ga0150984_1199830503	3300012469	Avena Fatua Rhizosphere	VEVPKSDAELSADLQDEADRIKALARALADLFGRKAVVVWPDDTEVVVEPRPELKRDS*
Ga0157287_10494942	3300012885	Soil	MISVRGDVGGVEMPKSEAEVSADLRDEAGRIDDLARLLADHFGRKVVLVWPDDEEVVVEPRPELRLDG*
Ga0162652_1000866943	3300012941	Soil	MEIYDFRFGDVVGIVEVPKSKTQVPADLRTEADRLDNLAHALADHFGRKVVLVWPDKEVVVEPRTELRPDG*
Ga0164300_107030092	3300012951	Soil	VPKSKTQVPADLRTEADRLDDLVQALADHFGRKVVLVWPDDKEVVVEPRPELKREG*
Ga0164303_114523811	3300012957	Soil	LGIVEVPKSKTQVPADLRTEADRLDDLVHALADHFGRKVVLVWPDDKEVVVEPRPELRPDG*
Ga0164301_104414641	3300012960	Soil	VPKSKTQVPAASRTEADRLDDLVHALADHFGRKVVLVWPDDKEVVVEPRPELKLDR*
Ga0164301_108007842	3300012960	Soil	VEVPKSKTQVPANLRTEADRLDDLMHALADHFGRKVVLVWPDNKEVVVEPRPELRVDG*
Ga0164302_108727281	3300012961	Soil	VEVPKSEAEVSADQRDEADRIDDLAHALADHFGRKVVLVWPDDKEVVVEPRPELRPDG*
Ga0164309_107754362	3300012984	Soil	IVEVPKSKTQVSAGLRTEADRLDNLVHALADLFGRKAVLVWPDDKEVVVEPRPKLRLDG*
Ga0164309_112080791	3300012984	Soil	LGIVEVPKSKPEVSADLRDEADRLVDLAHALADLFGRKAVLVWPDDKEVVVEPRPKPRLHR*
Ga0164309_117114951	3300012984	Soil	VEVPKSKTRVLADLRTEADRIDKLAHALADHFGRKVVLAWPDDKEVVVEPRSEQRPDGTPLRSN*
Ga0164308_111358112	3300012985	Soil	LGIVEVPKSKPEVSADLRDEAERIDALARALADQFGRKVVVVWPDDKEEVVEPRPELRPDG*
Ga0164304_111316961	3300012986	Soil	LGIVEVPKSKTQVPADLRTEAERLDDLVHALADHFGRKVVLVWPDDKEVVVEPRPELRLDG*
Ga0164306_101061224	3300012988	Soil	LGIVEVPKSKTQVPADSRTEADRLDDLVHALADHFGRRVVLVWPDDKELVVEPRHELRLDD*
Ga0157374_121661511	3300013296	Miscanthus Rhizosphere	VPKSKTKVPADLRSEAERLDDLMHALADHFGRKVVLVWPDDKEVVVEPRPELRPDG*
Ga0157378_110271663	3300013297	Miscanthus Rhizosphere	LGIVEVPKSKPEVSADLRDEADRLVDLAHALADLFGRKAVLVLPDDKEVVVEPRSKPRLHR*
Ga0157378_120249741	3300013297	Miscanthus Rhizosphere	VEVPKSETQVSADLWDEADTIDLAHALADYYGRKVVVVWTDDQEVVVESRVERGLRSGQIDMLY*
Ga0157378_124810732	3300013297	Miscanthus Rhizosphere	PADLRTEAVRLDDLVQALADHFGRKVVLVWPDAKEVVVEPRPELRPDV*
Ga0163162_112978912	3300013306	Switchgrass Rhizosphere	MALAETYDFGSGAKLGIVEVPKSKTQVPVDLRTEADRLDDLVQALADHFGRKVVLVWPDDKEVVVEPRPELRL
Ga0163162_125413551	3300013306	Switchgrass Rhizosphere	LGIVEMPKSKPEVSADLRDEADRLVDLAHALADLFGRKAVLVWPDDKEVVVEPRPKPRLDR*
Ga0163162_128830151	3300013306	Switchgrass Rhizosphere	LGIVEVPKSKAEVSADQRDEADRIDDRAHALADHFGRKVVLVWPGDKEVVVEPRPELRP
Ga0157375_106899472	3300013308	Miscanthus Rhizosphere	LGIVEVPKSKTQVPADPRTEADRLDDLVHALADHFGRRVVLVWPDDKELVVEPRHELRLDD*
Ga0157375_125347511	3300013308	Miscanthus Rhizosphere	LGIVEVPKSKPEVSADLRDEADRLVDLAHALADLFGRKAVLVWPDDKEVVVEPRRKPRLHR*
Ga0163163_105486902	3300014325	Switchgrass Rhizosphere	LGIVEVPKSEAEVSADLEADRMDALARALADLFGRKAVLVWPDDKEEVFEPRAGRSRDG*
Ga0157380_101149101	3300014326	Switchgrass Rhizosphere	FETQVLADLRDGDEADRIDALAHALADCFGRKVVLVWPDDKEVVVEPHPALRLDG*
Ga0157380_111518711	3300014326	Switchgrass Rhizosphere	LGIVEVPKSEAEVSADLRDEADRIDNLAHALADLFGRKVVLVWPDDKEVVVEPRPELGPDG*
Ga0157376_109013011	3300014969	Miscanthus Rhizosphere	LGIVEVPKSKPEVSADLRDEAERIDALARALADQFGRKVVVVWPDDKEEVVEPRPERRLDG*
Ga0157376_122272472	3300014969	Miscanthus Rhizosphere	KPTISILGTYWGIVEVSKSKTQVPANLRTEADRLDDLAHALADLFGRKAVLVWPDDKEVVVEPRPKPRLHR*
Ga0157376_130358182	3300014969	Miscanthus Rhizosphere	VPKSKTKVPADLRSEAERLDDLMHALADQFGRKVVVVWPDDEEVVVEPRPERRLDG*
Ga0132257_1019883391	3300015373	Arabidopsis Rhizosphere	RFRYRGRSWGSVEVPKSKTQVPADLRTEADRLDDLVHALADHFGRKVVLVWPDDKEVVVEPRPELRLDG*
Ga0132257_1029774312	3300015373	Arabidopsis Rhizosphere	LGIVEVPKSEAEVSADLRGKADRIDKLAHALADLFGRKVVVVWPDDKEVVVEPRPELSPDG*
Ga0132255_1030402282	3300015374	Arabidopsis Rhizosphere	VEVPKSETHVSTDQRDEADRIDNLAHALADQFGRKVVVVWPDDKEVVVEPRPELRLDG*
Ga0132255_1035374781	3300015374	Arabidopsis Rhizosphere	LGTVEVPKSKTQVPADLRTDTDRLNDLVHALADHFGRKVVLVWPDDKEVVVEPRPQLRLDG*
Ga0163161_104405272	3300017792	Switchgrass Rhizosphere	VEVPKSKTQVSADQRDEADRIDALAHALADQFGRKVVVVWPDDEEVVVEPRPERRLDG
Ga0163161_112420182	3300017792	Switchgrass Rhizosphere	MEVPKSETQVSTDLRDEADRIDDLAHALADHFGRTVVVVWTDDKEVVVEPRVERRLDN
Ga0184624_102346552	3300018073	Groundwater Sediment	LGIVEVPKSKPEVSADLRDEADRLVDLAHALADLFGRKAVLVWPDDKEVVVEPRPELRPD
Ga0190275_102930691	3300018432	Soil	VPKSEAEKSEADVSADLRDEADRLDDLARALADHFGRKVVLVWPDDTEVEIEPCPELRLD
Ga0190270_100981124	3300018469	Soil	MVSVRGDVGGVEMPKSEAEVSADLRDEAGRIDDLARLLADHFGRKVVLVWPDDEEVVVEPRPELRLDG
Ga0190270_108847912	3300018469	Soil	MVEVPKSETEAGKSEAEVSAGLRDEADRIDDLARALADHFGRKVVLVWPDDTEVGIEPCPELRLDG
Ga0190270_122722691	3300018469	Soil	MALMATYDLGRERSWGIVEVPKSETQSSTDLRDEADRIEDLAHALADRFGRKVVLVWPDDKEVVVEPRAGRNLDG
Ga0190274_102020982	3300018476	Soil	MAHRRCMIFGSGTLGIVEVPKSEAEKSEADVSAGLRDEADRIDDLARALADHFGRKAVLVGPDDTEVEIEPCPELRLGG
Ga0190274_111213892	3300018476	Soil	VEVPKSVAEVSTDQRDEAERLDDLAHALADHFGRKVVLVWPDDTEVVVEPCPELRLDG
Ga0190274_115909251	3300018476	Soil	VPKFETQVLADLRDGDEAARIDALAHALADCFGRKVVLVWPDDKEVVVEPCAGRSLES
Ga0190271_102672121	3300018481	Soil	MVSVRGDVGGVEMPKSEAEVSADLRDEAGRIDDLARLLADHFDRKVVLVWPDDEEVVVEPRHELRLDG
Ga0190271_103840343	3300018481	Soil	VPKSKVEVPADLRTEAERLDDLVHALADQLGRKVVLVLPDDTEVVVEPSPEPRLDG
Ga0190271_108045553	3300018481	Soil	MALTATYDLGRGNSWGIVEVPKSETQVLADLRDEADRIGALAHALADRFGRKVVLVWPDDKEVVVEPRAGRNLDG
Ga0190271_114287492	3300018481	Soil	LGIVEVPKSEAEAEKSEAEVSAGLRDEADRIDDLARALADHFGREVVLVWPDDT
Ga0190271_123059351	3300018481	Soil	SEAEVSAGLRDEADRIDDLARALADHFGRKVVLVWPDDTEVGIEPCPELRLDG
Ga0173479_105027612	3300019362	Soil	TKTYDFGTGDVVGVVEVPKSQTQVPADLRTEAERLDDLVHALADHFGRRVVLVWPDDKELVVEPRHELRLDD
Ga0210397_107769081	3300021403	Soil	LGIVKVPKSKTPVSADLRTEADRLDKLMHSLADHFGRKVVLVWPDDEEVVVEPRPELRLD
Ga0210392_105192132	3300021475	Soil	LGIVKVPKSKTPVSADLRTEADRLDKLMHSLADHFGRKVVLVWPDDKEVAVEPRPELRLD
Ga0212123_107220292	3300022557	Iron-Sulfur Acid Spring	VPKSKTQVPHDLRTEADRLDDLLHALADHFGRKVVLVWPDDKEVVVEPRP
Ga0207697_100279211	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG
Ga0207697_100605764	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	LGIVEVPKSEAEVSADLRDEADRINNLAHALADLFGRKVVVVWPDDKEVVVEPRPELRPD
Ga0207682_104606821	3300025893	Miscanthus Rhizosphere	LGIVEVPKSEAEVSADLRDEAERIDALARALADQFGRKVVVVWPDDKEVVVEPRPELRLD
Ga0207642_100142493	3300025899	Miscanthus Rhizosphere	MARTETYQFRLGGELRIVEVPKSEAEVSEDLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG
Ga0207710_101969194	3300025900	Switchgrass Rhizosphere	ELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG
Ga0207643_101516723	3300025908	Miscanthus Rhizosphere	MARTETYQFWLGGELGIVEVPKSEAEVSADLRDEADRINNLAHALADLFGRKVVVVWPDDKEVVVEPRPELRPDG
Ga0207662_101356113	3300025918	Switchgrass Rhizosphere	MARTETYQFWLGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG
Ga0207657_113578652	3300025919	Corn Rhizosphere	GRSRDRGLPKSKSQVSADLRTEADRLDNLAHALADHFGRKVVLVWPDDKEVVVEPRTELRPDG
Ga0207659_117244921	3300025926	Miscanthus Rhizosphere	LGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLD
Ga0207701_101480551	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVWPDDTEVVVE
Ga0207701_105494133	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VEVPKSEAEVSEDLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG
Ga0207701_109629732	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	GIVEVPKSEAEVSADQREEADRINALARALADLFGRKAVVVWPDDTEVVVEPRPELKLDR
Ga0207669_107261581	3300025937	Miscanthus Rhizosphere	FQKLGIVEVPKSKAEVSADQRDEADRIDDLAHALADHFGRKVVLVWPDDKEVVVEPRPELRPDG
Ga0207669_111704332	3300025937	Miscanthus Rhizosphere	MISVRGDVGGGVEMPKSEADVSADLRDEAGRIDDLARLLADHFGRKVVLVWPDDEEVVVEPRPELRLDG
Ga0207704_100519754	3300025938	Miscanthus Rhizosphere	MARTETYQFRLGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG
Ga0207691_102543352	3300025940	Miscanthus Rhizosphere	LGIVEVPKSEAEVSADLRDEADRINNLAHALADLFGRKVVLVWPDDKEVVVEPRPELGPD
Ga0207711_117063391	3300025941	Switchgrass Rhizosphere	YLPFLARGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG
Ga0207712_118691532	3300025961	Switchgrass Rhizosphere	LGIVEVPKSEAEVSADLRDEADRIDNLAHALADLFGRKVVVVWPDHKEVVVEPHPALRLD
Ga0207668_112038612	3300025972	Switchgrass Rhizosphere	VPKSETQMSPDLRGEADRIDTLARALADLFGRKVVVVWPDDKEVVVEPRPE
Ga0207678_107363572	3300026067	Corn Rhizosphere	LGIAEVSKSKTQVSVDLRTEAERLNELVQALADHFGRKVVLVWPDDKEVVVEPRPELRPD
Ga0207678_118884742	3300026067	Corn Rhizosphere	LGIVEVPKSKTRVLADLRTEADRIDKLAHALADHFGRKVVLAWPDDKEVVVEPRCEQRPDGTPLRSN
Ga0207641_118093482	3300026088	Switchgrass Rhizosphere	MARTETYHFWLGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEHRAERRLDG
Ga0207648_100733454	3300026089	Miscanthus Rhizosphere	MARTETYHFWLGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG
Ga0207648_116692983	3300026089	Miscanthus Rhizosphere	LGIVEVPKSEAEVSADLRGKADRIDKLAHALPDLFGRKVVVVWPDDKEVVVEPRPELRPD
Ga0207675_1005820651	3300026118	Switchgrass Rhizosphere	LGIVEVPKSEAEVSADLRDEADRIDNLAHALADLFGRKVVVVWPDHKEVVVEPHPALR
Ga0207683_102587211	3300026121	Miscanthus Rhizosphere	TETYQFWLGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG
Ga0207683_104405683	3300026121	Miscanthus Rhizosphere	EVPKSKTYAPADLRTEADRLDDLVHALADHFGRKVVLMWPDDKEVVVEPRPKPRLDR
Ga0207698_114763773	3300026142	Corn Rhizosphere	LGGELGIVEVPKSEAEVSADLRDEADRINALARALADLFGRKAVVVWPDDTEVVVEPRAERRLDG
Ga0307285_102496622	3300028712	Soil	VPKSKTQVPANLRTEADRLDDLAHALADLFGRKAVLVWPDDKEVVFEPRPGQRLDG
Ga0170834_1082396232	3300031057	Forest Soil	LGIVEVPKSKMPADLRTEADRLDNLMHALADHFGRKVVLVWPDDKEVVVEPRPELRLDG
Ga0170824_1193321261	3300031231	Forest Soil	LGIVEVPKSKTQVPADLRTEADRLDDLVHALADHFGRKVVLVWPDDKEVVVEPRPELRLE
Ga0170824_1230301324	3300031231	Forest Soil	LGIVEVPKSKMPADLRTEADRLDNLMHALADHFGRKVVLVWPDDKEVVVEPRPE
Ga0307506_101068831	3300031366	Soil	VPKSKPEVSADLRDEAERIDALARALADQFGRKVVVVWPDDKEVVVEPRPERRLDG
Ga0307506_102179351	3300031366	Soil	LGIVEVPKSKPEVSADLRDEADRLVDLAHALADLFGRKAVLVWPDDKEVVVEPRPKLRLD
Ga0170819_170585022	3300031469	Forest Soil	MALTETYDFGTGEVVGIVEVPKSKTQVPADLRTEADRLDDLVHALADHFGRKVVLVWPDDKEVVVEPRPELRLDG
Ga0310904_112058132	3300031854	Soil	EVSADKRDEADRIDDLAHVLADHFGRKVVLVWPDDKEVVVEPRPQLRLDG
Ga0307472_1014715901	3300032205	Hardwood Forest Soil	LGIVEVPKSKAEVSADQRDEADRIDDLAHALADHFGRKVVLVWPDDKEVVVEPRPELRLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056832

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences