Metagenome / Metatranscriptome Family F056448

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F056448
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	75 residues
Representative Sequence	MNYEEAIKELQDNLIVIAEIERRQSALLREHSEHMAELLEFRRRTDQNLAEITDKLNGLIGYVDGIRPPPPS
Number of Associated Samples	104
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	42.54 %
% of genes near scaffold ends (potentially truncated)	18.25 %
% of genes from short scaffolds (< 2000 bps)	76.64 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (78.832 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere (9.489 % of family members)
Environment Ontology (ENVO)	Unclassified (31.387 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.175 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.00% β-sheet: 0.00% Coil/Unstructured: 36.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF13360	PQQ_2	13.43
PF01063	Aminotran_4	5.97
PF01435	Peptidase_M48	5.22
PF13602	ADH_zinc_N_2	4.48
PF00106	adh_short	3.73
PF00180	Iso_dh	3.73
PF01261	AP_endonuc_2	3.73
PF07883	Cupin_2	3.73
PF01011	PQQ	2.24
PF03946	Ribosomal_L11_N	2.24
PF13419	HAD_2	2.24
PF08541	ACP_syn_III_C	1.49
PF08240	ADH_N	1.49
PF00056	Ldh_1_N	1.49
PF02423	OCD_Mu_crystall	0.75
PF00107	ADH_zinc_N	0.75
PF13439	Glyco_transf_4	0.75
PF02602	HEM4	0.75
PF01042	Ribonuc_L-PSP	0.75
PF08545	ACP_syn_III	0.75
PF01575	MaoC_dehydratas	0.75
PF00135	COesterase	0.75
PF01263	Aldose_epim	0.75
PF14559	TPR_19	0.75
PF00848	Ring_hydroxyl_A	0.75
PF10672	Methyltrans_SAM	0.75
PF00589	Phage_integrase	0.75
PF00298	Ribosomal_L11	0.75
PF12543	DUF3738	0.75
PF01618	MotA_ExbB	0.75
PF00694	Aconitase_C	0.75
PF00069	Pkinase	0.75
PF07927	HicA_toxin	0.75
PF02021	UPF0102	0.75
PF07693	KAP_NTPase	0.75
PF13561	adh_short_C2	0.75
PF05690	ThiG	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	11.94
COG0080	Ribosomal protein L11	Translation, ribosomal structure and biogenesis [J]	2.99
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.99
COG0039	Malate/lactate dehydrogenase	Energy production and conversion [C]	1.49
COG1486	Alpha-galactosidase/6-phospho-beta-glucosidase, family 4 of glycosyl hydrolase	Carbohydrate transport and metabolism [G]	1.49
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	1.49
COG0214	Pyridoxal 5'-phosphate synthase subunit PdxS	Coenzyme transport and metabolism [H]	0.75
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.75
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	0.75
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	0.75
COG1587	Uroporphyrinogen-III synthase	Coenzyme transport and metabolism [H]	0.75
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.75
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	0.75
COG2022	Thiazole synthase ThiGH, ThiG subunit (thiamin biosynthesis)	Coenzyme transport and metabolism [H]	0.75
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.75
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.75
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	0.75
COG4928	Predicted P-loop ATPase, KAP-like	General function prediction only [R]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.83 %
Unclassified	root	N/A	21.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.83 %
Unclassified	root	N/A	21.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.83 %
Unclassified	root	N/A	21.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	37.96 %
Unclassified	root	N/A	21.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.19 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	27.01 %
Unclassified	root	N/A	21.17 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.38 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.46 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.17 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	13.14 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9.49 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.38 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1.46 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	1.46 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.17 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	10.95 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.49 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.38 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1.46 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1.46 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.73 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.17 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	10.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.38 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	2.92 %
Alicyclobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae	1.46 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1.46 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.73 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.17 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	10.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.38 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2.92 %
Alicyclobacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus	1.46 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1.46 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.73 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.17 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	10.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.38 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2.92 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1.46 %
Candidatus Sulfopaludibacter sp. SbA6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	0.73 %
Variovorax sp. WS11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. WS11	0.73 %
Alicyclobacillus acidoterrestris	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus acidoterrestris	0.73 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100828051	All Organisms → cellular organisms → Bacteria	10855	Open in IMG/M
3300000789\|JGI1027J11758_12237742	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300003152\|Ga0052254_1167621	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	649	Open in IMG/M
3300004024\|Ga0055436_10142389	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	727	Open in IMG/M
3300004082\|Ga0062384_100018029	All Organisms → cellular organisms → Bacteria	2926	Open in IMG/M
3300004082\|Ga0062384_100018029	All Organisms → cellular organisms → Bacteria	2926	Open in IMG/M
3300004082\|Ga0062384_100798478	Not Available	659	Open in IMG/M
3300004091\|Ga0062387_100177480	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
3300004092\|Ga0062389_100305188	All Organisms → cellular organisms → Bacteria → Acidobacteria	1661	Open in IMG/M
3300004092\|Ga0062389_102389318	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	699	Open in IMG/M
3300004139\|Ga0058897_11007436	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300004152\|Ga0062386_101572368	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	548	Open in IMG/M
3300004635\|Ga0062388_100175182	All Organisms → cellular organisms → Bacteria	1662	Open in IMG/M
3300005174\|Ga0066680_10307056	Not Available	1012	Open in IMG/M
3300005334\|Ga0068869_100975179	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300005434\|Ga0070709_10984798	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300005435\|Ga0070714_100219110	All Organisms → cellular organisms → Bacteria → Proteobacteria	1748	Open in IMG/M
3300005436\|Ga0070713_100040681	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3780	Open in IMG/M
3300005439\|Ga0070711_101009132	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300005440\|Ga0070705_100064029	All Organisms → cellular organisms → Bacteria → Acidobacteria	2195	Open in IMG/M
3300005459\|Ga0068867_100431360	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300005533\|Ga0070734_10051732	All Organisms → cellular organisms → Bacteria	2489	Open in IMG/M
3300005533\|Ga0070734_10340245	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	857	Open in IMG/M
3300005537\|Ga0070730_10400608	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300005538\|Ga0070731_10026475	All Organisms → cellular organisms → Bacteria	3958	Open in IMG/M
3300005538\|Ga0070731_10601316	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300005541\|Ga0070733_10002227	All Organisms → cellular organisms → Bacteria	14015	Open in IMG/M
3300005541\|Ga0070733_10019982	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4171	Open in IMG/M
3300005591\|Ga0070761_11106494	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005617\|Ga0068859_101756974	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300005718\|Ga0068866_10051044	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
3300005719\|Ga0068861_102209577	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300005836\|Ga0074470_10641316	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	23048	Open in IMG/M
3300005836\|Ga0074470_10769251	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2037	Open in IMG/M
3300005842\|Ga0068858_101532406	Not Available	658	Open in IMG/M
3300006059\|Ga0075017_101348023	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	560	Open in IMG/M
3300006102\|Ga0075015_100292081	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300006797\|Ga0066659_10967686	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300006806\|Ga0079220_10167299	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300006881\|Ga0068865_100015429	All Organisms → cellular organisms → Bacteria	4872	Open in IMG/M
3300006893\|Ga0073928_10248146	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1362	Open in IMG/M
3300009038\|Ga0099829_10517855	Not Available	990	Open in IMG/M
3300009038\|Ga0099829_10531474	All Organisms → cellular organisms → Bacteria → Acidobacteria	977	Open in IMG/M
3300009090\|Ga0099827_10030059	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3911	Open in IMG/M
3300009098\|Ga0105245_10433241	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1320	Open in IMG/M
3300009098\|Ga0105245_10628114	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300009098\|Ga0105245_10756727	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300009098\|Ga0105245_13266384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	502	Open in IMG/M
3300009176\|Ga0105242_10011594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus acidoterrestris	6779	Open in IMG/M
3300009176\|Ga0105242_10194578	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300009177\|Ga0105248_12189364	Not Available	629	Open in IMG/M
3300009177\|Ga0105248_13088017	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300010379\|Ga0136449_100020619	All Organisms → cellular organisms → Bacteria → Acidobacteria	16855	Open in IMG/M
3300010379\|Ga0136449_100988996	All Organisms → cellular organisms → Bacteria → Acidobacteria	1356	Open in IMG/M
3300010379\|Ga0136449_102130957	Not Available	821	Open in IMG/M
3300010400\|Ga0134122_10111168	All Organisms → cellular organisms → Bacteria	2183	Open in IMG/M
3300011120\|Ga0150983_16193947	Not Available	533	Open in IMG/M
3300011269\|Ga0137392_10977799	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300011270\|Ga0137391_10431876	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1122	Open in IMG/M
3300012096\|Ga0137389_11386759	Not Available	598	Open in IMG/M
3300012917\|Ga0137395_10098035	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1943	Open in IMG/M
3300012917\|Ga0137395_10493494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. WS11	881	Open in IMG/M
3300014501\|Ga0182024_10004602	All Organisms → cellular organisms → Bacteria	31579	Open in IMG/M
3300014838\|Ga0182030_10996090	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	738	Open in IMG/M
3300014968\|Ga0157379_10628682	Not Available	1004	Open in IMG/M
3300014969\|Ga0157376_11829209	All Organisms → cellular organisms → Bacteria → Terrabacteria group	644	Open in IMG/M
3300017972\|Ga0187781_10611758	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	786	Open in IMG/M
3300017975\|Ga0187782_10503945	All Organisms → cellular organisms → Bacteria → Acidobacteria	926	Open in IMG/M
3300017975\|Ga0187782_10616208	Not Available	834	Open in IMG/M
3300018043\|Ga0187887_10928390	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300018062\|Ga0187784_10212143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1579	Open in IMG/M
3300018086\|Ga0187769_10313892	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300018088\|Ga0187771_10464926	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300018429\|Ga0190272_13119925	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	515	Open in IMG/M
3300019888\|Ga0193751_1047794	Not Available	1864	Open in IMG/M
3300020580\|Ga0210403_10587251	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300021171\|Ga0210405_10336726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1191	Open in IMG/M
3300021171\|Ga0210405_10716112	Not Available	772	Open in IMG/M
3300021402\|Ga0210385_10633232	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300021407\|Ga0210383_10858923	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300021432\|Ga0210384_10009969	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9730	Open in IMG/M
3300021432\|Ga0210384_10291092	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1470	Open in IMG/M
3300021432\|Ga0210384_10714705	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	896	Open in IMG/M
3300021474\|Ga0210390_11446539	Not Available	546	Open in IMG/M
3300021477\|Ga0210398_10531641	Not Available	957	Open in IMG/M
3300021559\|Ga0210409_10175601	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1957	Open in IMG/M
3300021860\|Ga0213851_1226517	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	719	Open in IMG/M
3300021861\|Ga0213853_11060380	All Organisms → cellular organisms → Bacteria → Acidobacteria	4875	Open in IMG/M
3300022530\|Ga0242658_1235776	Not Available	512	Open in IMG/M
3300022557\|Ga0212123_10644529	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300025165\|Ga0209108_10246369	Not Available	910	Open in IMG/M
3300025324\|Ga0209640_10165767	All Organisms → cellular organisms → Bacteria	1888	Open in IMG/M
3300025898\|Ga0207692_10193180	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300025914\|Ga0207671_11298151	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300025927\|Ga0207687_10261962	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300025927\|Ga0207687_10538657	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	978	Open in IMG/M
3300025927\|Ga0207687_10945159	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	738	Open in IMG/M
3300025928\|Ga0207700_10211790	Not Available	1639	Open in IMG/M
3300025934\|Ga0207686_10003187	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	8827	Open in IMG/M
3300025934\|Ga0207686_10004274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus	7657	Open in IMG/M
3300025934\|Ga0207686_10045906	All Organisms → cellular organisms → Bacteria	2691	Open in IMG/M
3300025934\|Ga0207686_10631389	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300027842\|Ga0209580_10330110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300027846\|Ga0209180_10754107	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	525	Open in IMG/M
3300027853\|Ga0209274_10392145	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300027857\|Ga0209166_10282114	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	876	Open in IMG/M
3300027867\|Ga0209167_10001434	All Organisms → cellular organisms → Bacteria	14024	Open in IMG/M
3300027867\|Ga0209167_10001739	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	12399	Open in IMG/M
3300027869\|Ga0209579_10106012	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300027882\|Ga0209590_10632131	Not Available	688	Open in IMG/M
3300027905\|Ga0209415_10000749	All Organisms → cellular organisms → Bacteria → Acidobacteria	61012	Open in IMG/M
3300027905\|Ga0209415_10874096	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300028566\|Ga0302147_10315043	Not Available	518	Open in IMG/M
3300028906\|Ga0308309_11405547	Not Available	598	Open in IMG/M
3300030760\|Ga0265762_1173858	Not Available	526	Open in IMG/M
3300031057\|Ga0170834_100557406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300031057\|Ga0170834_103978075	Not Available	531	Open in IMG/M
3300031057\|Ga0170834_105347095	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	529	Open in IMG/M
3300031128\|Ga0170823_13642865	Not Available	565	Open in IMG/M
3300031231\|Ga0170824_117508636	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	529	Open in IMG/M
3300031236\|Ga0302324_102122777	Not Available	700	Open in IMG/M
3300031261\|Ga0302140_10873889	Not Available	633	Open in IMG/M
3300031708\|Ga0310686_112513514	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300031753\|Ga0307477_10929888	Not Available	573	Open in IMG/M
3300032160\|Ga0311301_10025305	All Organisms → cellular organisms → Bacteria → Acidobacteria	16069	Open in IMG/M
3300032515\|Ga0348332_12834837	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	571	Open in IMG/M
3300032515\|Ga0348332_12834837	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	571	Open in IMG/M
3300032515\|Ga0348332_13944759	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	729	Open in IMG/M
3300032515\|Ga0348332_13944759	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	729	Open in IMG/M
3300032770\|Ga0335085_11003334	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	902	Open in IMG/M
3300033412\|Ga0310810_10122722	All Organisms → cellular organisms → Bacteria → Proteobacteria	3062	Open in IMG/M
3300033433\|Ga0326726_10354836	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300033977\|Ga0314861_0012882	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5753	Open in IMG/M
3300034090\|Ga0326723_0078158	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.75%
Host-Associated	Host-Associated	18.25%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.88%
Plants	Host-Associated → Plants	18.25%
Aquatic	Environmental → Aquatic	13.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.14%
Freshwater	Environmental → Aquatic → Freshwater	8.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.11%
Peat	Environmental → Terrestrial → Peat	3.65%
Sediment	Environmental → Aquatic → Sediment	2.92%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.46%
Marine	Environmental → Aquatic → Marine	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.14%
Loam	Environmental → Terrestrial → Soil → Loam	10.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.30%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.11%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.92%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.46%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.46%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.73%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.28%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.14%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.57%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.11%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.92%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.46%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.46%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.46%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.73%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.73%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	9.49%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	8.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.30%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.38%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.38%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.92%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.19%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.46%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.46%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.46%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.46%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.46%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.46%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.73%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.73%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.73%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.73%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.73%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.73%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.73%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.73%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.73%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003152	Freshwater sediment microbial communities from Loktak Lake, India	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033977	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_10082805112	3300000364	Soil	MNYEQAIKDLQDNLVVIAEIERRQSRMLLEHSEYLGEMTEYRRRIDHNLAEITDKLNGLIGYVDGFRPPPAP*
JGI1027J11758_122377422	3300000789	Soil	MNYEQAIKDLQDNLVVSAEIERRQSRMLLEHSEYLGEMTEYRRRIDHNLAEITDKLNGLIGYVDGFRPPPAP*
Ga0052254_11676212	3300003152	Sediment	MEAFGPLTVMNYEQAIKDLQDTLIVIGEIERRQSALIREHSEHLGELLEYRRRTEQNLTEITDKLNGLIGYMDGLHPPPA*
Ga0055436_101423892	3300004024	Natural And Restored Wetlands	MALKRAVADLQESMIVIAEIEKHQSKLLREHSEHLGELLEYRRRTDQNLAEITDKLNGLIGYVASSRPSLPPS*
Ga0062384_1000180293	3300004082	Bog Forest Soil	MNYEQAIKDLQDTVIVMAEMERRQSAMLREHAQMLRDTVEFRRRTDQNLAEITDKLNGLIGYVAGMPPPQPS*
Ga0062384_1000180294	3300004082	Bog Forest Soil	AMLRQHAETRQKHDEMLRDTTEFRRRTDQNLAEITDKLNGLIGYVDGMPPPQPS*
Ga0062384_1007984781	3300004082	Bog Forest Soil	MNVQNAIKELQDNLLVMADLERRQSKLLLEHSELLTGHRELIAEGDVFRRRTEQNLAEITDKLS
Ga0062387_1001774801	3300004091	Bog Forest Soil	MNYEQAIKDLQNTLVVMTEMERRQSAMLRQHAETRQKHDEMLRDTTEFRRRTDQNLAEITDKLNGLIGYVDGMPPPQPS*
Ga0062389_1003051883	3300004092	Bog Forest Soil	MNVQNAIKELQDNLLVMADLERRQSKLLLEHSELLTGHRELIAEGDVFRRRTEQNLAEITDKLSGLIGYIDGMNPPDKN*
Ga0062389_1023893182	3300004092	Bog Forest Soil	WGRQGHTLVMNYEQAIKDLQNTLVVMTEMERRQSAMLRQHAETRQKHDEMLRDTTEFRRRTDQNLAEITDKLNGLIGYVDGMPPPQPS*
Ga0058897_110074361	3300004139	Forest Soil	VFMSNIERAIKDLQDAMIVIAEIEKRQSAMLREHAEHLGELLEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPSQ*
Ga0062386_1015723682	3300004152	Bog Forest Soil	VDVERAIKEIQDALIVIAEIERRQSAMLREHSEHMGGLIEFRRGAEPKIHEIEDKLNGLIGYMDGLRPPPA*
Ga0062388_1001751823	3300004635	Bog Forest Soil	MNYEQAIKDLQDTLVVIGEIERRQSAILREHAEILHDTLEFRRRTDQNLAEITDKLNGLIGYVDGMPPPQPS*
Ga0066680_103070562	3300005174	Soil	MNYEQAIKELQDNLIVIAEIERRQSAMLLEHREVLHEHIKHMAEILEFRRRTEQNLAEITDKLNGLIGYMDGLRPPSS*
Ga0068869_1009751792	3300005334	Miscanthus Rhizosphere	VAYEQAIKDLQDNLVVIAEIEKRQSQMLREHSEYLGEMTEYRRRIDHNLAEITDKLNGLIGYVDGFRPPPAP*
Ga0070709_109847982	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSNIERAIKALQDTLIVIAEIEKRQSAMLREHSERIVNIEQHVARLNAESAEFRRRTDQNLAEITDKLNGLIGYVGGMHPPPPPQ*
Ga0070714_1002191102	3300005435	Agricultural Soil	MDYEHAIKDLQDTLLVIAEIERRQSRMLLEHSEHIGELIEYRRRIDHNLAEITDKLNGLIGYVDGLRPPPPS*
Ga0070713_1000406816	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDYEHAIKDLQDTLLVIAEIERRQSRMLLEHSEHIGELIEYRRRIDHNLAEITDKLNGLIRYVDGLRPPPPS*
Ga0070711_1010091322	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSNIERAIKALQDTLIVIAEIEKRQSAMLREHSERIVNIEQHVARLNAESAEFRRRTDQNLAEITDKLNGLIGYVGGMHPPPPK*
Ga0070705_1000640292	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNFEAAIKDLQDSMVVISEIERRQSNLLLTHSKWIAEHDAELKEYRRRTDQNLAEITDKLNGLIGFVGGHRPPQ*
Ga0068867_1004313601	3300005459	Miscanthus Rhizosphere	VGDRRTILPVAYEQAIKDLQDNLVVIAEIEKRQSRMLREHSEYLGEMTEYRRRIDHNLEEITDKLNGLIGYVDGFRPPPAP*
Ga0070734_100517322	3300005533	Surface Soil	MNYEQAIKDLQDTLVVIGEIERRQSKLLRDHAQLLREHDEHLGEMQEFRRRTERNLAEITDKLNGLIGWADGLQPPEHPA*
Ga0070734_103402453	3300005533	Surface Soil	MTNIEQAIKDLQDAMIVTAEIEKRQTRMLREHAEHLGEMLEFRRRTEENLSEITDKLNGLIGYLDRSRPPIAPS*
Ga0070730_104006082	3300005537	Surface Soil	MSNIEQAIKDLQDAMIVIAEIEKRQSALLREHAEHLGELLEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPS*
Ga0070731_100264754	3300005538	Surface Soil	MNYQEAINDLQDTLVVMAEMERRQSVMLCYHAETLLKHDEMLRDTEEFRRRTEQNLAEITDKLNGLIGYVDGMPPRRPS*
Ga0070731_106013162	3300005538	Surface Soil	MDYGQAIKELQDNLIVIAEIERRQSRMLREHSEYLGELTEYRRRIDHNLAEITDKLNGLIGYVDGLGPPPAP*
Ga0070733_100022274	3300005541	Surface Soil	MNYEQAIKELQDTLIVIGEIERRQSALLREHSELLSEHADMLRDTEVFRRRTDQNLAEITDKLNGLIGYVDGMPPPRPS*
Ga0070733_100199823	3300005541	Surface Soil	MSNIGRAIEDLQDTLIVVAEIEKRQSAMLRENSERIVRFEAESLEFRRRTDQNLAEITDKLDGFIGYVGWMNPPRSQ*
Ga0070761_111064942	3300005591	Soil	KAIKELQDNLLVIAEIEKRQSALLREHSELHPENVEFRRRTEQNLAEITDKLNGLIGYTDGLHRPPSQ*
Ga0068859_1017569741	3300005617	Switchgrass Rhizosphere	QAIKDLQDNLVVIAEIEKRQSRMLREHSEYLGEMTEYRRRIDHNLEEITDKLNGLIGYVDGFRPPPAP*
Ga0070764_105849001	3300005712	Soil	VVIAEIERRQSAMLREHAEILHETILFRRRTEQNLAEITDKLNGLIGYVDGLPPSRPS*
Ga0068866_100510442	3300005718	Miscanthus Rhizosphere	VGYGRTLFCMNYEQAIKDLQDNLVVIAEIERRQSRMLLEHSEYLGEMTEYRRRIDHNLAEITDKLNGLIGYVDGFRTPPAP*
Ga0068861_1022095771	3300005719	Switchgrass Rhizosphere	MNFEAAIKDLQDSMIVISEIEKRQSALLLTHSKWIAEHDAELKEYRRRTDQNLAEITDKLNGLIGFVGGHRPPQ*
Ga0074470_1064131610	3300005836	Sediment (Intertidal)	MDLRRAVADLQESMIIIAEIESASKLLREHAEHLGVLLEYRRRTDQNLAEITDKLNGLIGYGASSRLSLPPS*
Ga0074470_107692512	3300005836	Sediment (Intertidal)	MSYEQAIRELQDNLVVIAEIERRQSAMLKDHAGHIGELLEYRRRIDQNLAEITDKLNGLIGFVDGQQPPRPS*
Ga0068858_1015324062	3300005842	Switchgrass Rhizosphere	MNYDQVIRELQDNLLVITEIERRQSALLKEHSEHIGELIQYRLRIDQNLAEITDKLNGLIGYMDGQRPPLPS*
Ga0070766_111129122	3300005921	Soil	MSNIEQAVKELQDTLVVISEIERRQSSVLKEHSERIVYLERLAQESAEFRHRTEQNLAEITDKLNGLIGYVDGLHKPNQPN*
Ga0075017_1013480232	3300006059	Watersheds	MKAFGHGIVMNYEQAIQDLQDNLVVIAEIERRQSAMLREHAEHLGEILEFRRRTEQNLTEAAEFRRRTDQNLAEITDKLNGLIGYIDGQRPPVA*
Ga0075015_1002920812	3300006102	Watersheds	MNYEQAIKDLQDNLVVIAEIERRQSAMLRENAEHLGELLEFRRHTEQNLSEITDKLNGLIGYLDGQRPPLA*
Ga0066659_109676861	3300006797	Soil	MNYEEATKELQDNLIVIAEIERRQSAMLREHAEMLHEHNKHLAELLEFRRRTDQNLAEITGKLNGLIGYMDGLRPPPSP*
Ga0079220_101672992	3300006806	Agricultural Soil	MNYEQAIKDLQDNLVVIAEIERRQSAILREHTERIQQHERYQAEVNEYRRRIDQNLAEITDKLNGLIGCIDRLPRNPPN*
Ga0068865_1000154294	3300006881	Miscanthus Rhizosphere	MDYEHAIKDLQDTLLVIAEIERRQSRMLLEHSEHIGELIEYRRRIDHNLAEITDKLNGLIGYVDGFRPPPAP*
Ga0073928_102481461	3300006893	Iron-Sulfur Acid Spring	MNYEKMWATVAPYFAWTTRFRMDYEQAIKDRQDNLIVIAEIERRQSRLLRDHSEYLGELTEYRRRIDHNLAEITDKLNGLVGYVDGLRPPPAP
Ga0099829_105178551	3300009038	Vadose Zone Soil	MNYEEAIKELQDNLIVIAEIERRQSALLREHSEHMAELLEFRRRTDQNLAEITDKLNGLIGYVDGIRPPPPS*
Ga0099829_105314742	3300009038	Vadose Zone Soil	MSNIEQAIKDLQDTLIVIAEIGKRQSALLREHSQRIVNIEQHLEHVARLEGESAEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPSQ*
Ga0099827_100300593	3300009090	Vadose Zone Soil	MSNIEHAIKDLQDTLIVIAEIEKRQSALLREHSQRIVNIEQHLEHVARLEAESAEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPSQ*
Ga0105245_104332412	3300009098	Miscanthus Rhizosphere	MNYEQAIRELQDNLIVIAEIEKRQSALLKEHSEYIFRIDQNLAEITDKLNGLIGYMDGHGPRRPS*
Ga0105245_106281142	3300009098	Miscanthus Rhizosphere	MDYEHAIRDLQDTLLVIAEIERRQSRMLLEHSEHIGELIEYRRRIDHNRAEITDKLNGLIGYVDGFRPPPAP*
Ga0105245_107567272	3300009098	Miscanthus Rhizosphere	VAYEQAIKDLQDNLVVIAEIEKRQSRMLREHSEYLGEMTEYRRRIDHNLAEITDKLNGLIGYVDGFRPPPAP*
Ga0105245_132663841	3300009098	Miscanthus Rhizosphere	MDYEHAIKDLQDTLLVIAEIERRQSRMLLEHSEHIGELIEYRRRIDHNLAEITDKLNGLIGYVDGFRPPSVS*
Ga0105242_100115942	3300009176	Miscanthus Rhizosphere	MNYEQAIKDLQDNLVVIAEIERRQSRMLLEHSEYLGEMTEYRRRIDHNLAEITDKLNGLIGYVDGFRTPPAP*
Ga0105242_101945782	3300009176	Miscanthus Rhizosphere	VAYEQAIKDLQDNLVVIAEIEKRQSRMLREHSEYLGEMTEYRRRIDHNLEEITDKLNGLIGYVDGFRPPPAP*
Ga0105248_121893642	3300009177	Switchgrass Rhizosphere	MNYEQAIRELQDNLIVIAEIEKRQSALLKEHSENIFRIDQNLAEITDKLNGLIGYMDGQGPRRPS*
Ga0105248_130880172	3300009177	Switchgrass Rhizosphere	VGDRRTILPVAYEQAIKDLQDDLVVIAEIEKRQSRMLREHSEYLGEMTEYRRRIDHNLAEITDKLNGLIGYVDGFRPPPAP*
Ga0136449_10002061912	3300010379	Peatlands Soil	MNLEQAVKDLQDNLIVIAEIERRQSALLREHSEHLAEILEFRRRTDQNLAEITDKLNGLIGYVSGIKPPPQ*
Ga0136449_1009889964	3300010379	Peatlands Soil	MNYQEAIKDLQDTLVVIGEIERRQSVMLREHAEMLRKHAEMLRKHDLYHGEILEFQRRTDQNLAEITDKLNGLIGYVDGMPPPQPS*
Ga0136449_1021309571	3300010379	Peatlands Soil	MNYEQAIKDLQDNLIVIAEIERRQSKLLREHSEMLHDLIEFRRRTEQNLAEITDKLNGLIGYVDGLPPSRPS*
Ga0134122_101111682	3300010400	Terrestrial Soil	MDYEQAIKDLQDNLVVIAEIEKRQSRMLREHSEYLGEMTEYRRRIDHNLAEITDKLNGLIGYVDGFRPPPAP*
Ga0150983_161939471	3300011120	Forest Soil	TIFRMNYEQAIKDLQDNLIVIAEIERRQSAILREHAEMLHEHNLHFAELHEFRRRTDQNMAEITDKLNGLIGYVDGFRPPPAP*
Ga0137392_109777992	3300011269	Vadose Zone Soil	MSNIEQAIKDLQDALIVVAEIEKRPSALLREHSERIVNIEEHLERVAKLEAESAEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPSQ*
Ga0137391_104318762	3300011270	Vadose Zone Soil	MSNIEQAIKDLQDALIVVAEIEKRPSALLREHSERIVNIEEHLERVAKLEAESAEFRRRTDQNLAEITDKLNGLIGYVGGMNPTPSQ*
Ga0137389_113867591	3300012096	Vadose Zone Soil	SEQAIKDLQDTLIVIAEIEKRQSALLREHSQRIVNIEQHLEHVARLEAESAEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPSQ*
Ga0137395_100980352	3300012917	Vadose Zone Soil	MSNIEQAIKDLQDALIVIAEIEKRQSTRLREHSERIVRLEAESLEFRRRTDQNLAKITDKLNGLIGYVGGMNPPPSQ*
Ga0137395_104934942	3300012917	Vadose Zone Soil	MNVEQAVKDLQDSLTVIAEIERRQSSLLREHSERIVNIEHNLQTTAKLQAEAEQFRIRTEQNLAEITDKLNGLIGYVSGMKPPGM*
Ga0182024_1000460223	3300014501	Permafrost	MNYEQAIKELQDNLVVIAEIERRQSAMLREHAEMLHDTLEFRRRTDQNLAEITDKLNGLIGYVDGMPPPQPS*
Ga0182030_109960902	3300014838	Bog	MNLEQAVKELQDNLIVIAEIEKRQSAMLREHAEHLAENLKFQRRTDQNLAEITDKLNGLIGYVGGIKPPPR*
Ga0157379_106286821	3300014968	Switchgrass Rhizosphere	MDMQAAIKDLQDSMIVISEIEKRQSALLLTHSKWIAEHDAELKEYRRRTDQNLAEITDKLNGLIGFVGGHRPPPQ*
Ga0157376_118292091	3300014969	Miscanthus Rhizosphere	MNYEQAIRELQDNLIVIAEIEKRQSALLKEHSENIFRIDQNLAEITDKLNGLIGYVDGQGPRRPS*
Ga0187781_106117582	3300017972	Tropical Peatland	MNYKEAIKELQDAVIVMAEMERRQSAMLREHAEMLHNHDKHLAEISEYRRRTEQNLSEITDKLNGLIGYVDGLRPPSTPS
Ga0187782_105039451	3300017975	Tropical Peatland	MNYREAIKELQDAVIVMAEMERRQSAMLREHAEMLHNHDKHLAEISEYRRRTEQNLSEITDKLNGLIGYVDGLRPPSTPS
Ga0187782_106162082	3300017975	Tropical Peatland	MNYEEAIKDLQDTLVVIAEIERRQSALLREHSEHIAELQEYRRRYDQNMTEITDKLNGLIGYMDGLRPTPA
Ga0187887_109283902	3300018043	Peatland	MNYEQAIKDLQDNVIVMAEMERRQSAMLREHAEMLHDTLEFRRRTDQNLAEITDKLNGLIGYVAGMPPRPS
Ga0187784_102121432	3300018062	Tropical Peatland	MTNIERAVKELQDNLLVLAEIERRQSFILREHSEHLGELLEFRRRTDENLAEITDKLNGLIGFVSGLKPPAAPPQ
Ga0187769_103138923	3300018086	Tropical Peatland	MNYKEAIKELQDAVIVMAEMERRQSAMLREHAEMLHNHDKHLAEISEYRRRTEQNLSEITDKLNGLIGYVDG
Ga0187771_104649261	3300018088	Tropical Peatland	ELQDAVIVMAEMERRQSAMLREHAEMLHNHDKHLAEISEYRRRTEQNLSEITDKLNGLIGYVEGQRPGEGRQQ
Ga0190272_131199251	3300018429	Soil	MNYGQAIKDLQDNLVVIAEIERRQSRMLLEHSEYLGELTEYRRRIDHNLAEISDKLNGLIGYVDGLRPPPAP
Ga0193751_10477943	3300019888	Soil	MSNFERAIKDLQDTLILITETEKRQSAHGERIVRLGAESLEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPSQ
Ga0210403_105872512	3300020580	Soil	MDYEQAIKDLQDNLVVIAEIERRQSRLLRDHSEYLGELTDYRRRIDHNLAEITDKLNGLIGYVDGLRPPPAP
Ga0210405_103367261	3300021171	Soil	MSNIERAIKDLQDAMIVIAEIEKRQSAMLREHAEHLGELLEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPSQ
Ga0210405_107161122	3300021171	Soil	MSNIEQAVKELQDTLVVISEIERRQSSLLKEHSERIVYLERLAQESAEFRHRTEQNLAEITDKLNGLIGYVDGLHKPNQPN
Ga0210385_106332322	3300021402	Soil	MHYEQAIRELQDSLIVIAEIERRQSGMLREHAEMLHHHNQHYGEILEFRRRTEQNLAEITDKLNGLIGFVDGLPPSRPS
Ga0210383_108589232	3300021407	Soil	VTNMEKAVKELQDNLLVIAEIEKRQSALLREHSELIAESMAFRRRTEQNLVEITDKLNGLIGYMDGMHGPPSP
Ga0210384_100099697	3300021432	Soil	MSNVEQAIKDLQDTLIVIAEIEKRQSAMLRQHAEHLGELLEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPSQ
Ga0210384_102910922	3300021432	Soil	MSDFEQAIKDLQDTLIVIAEIEKRQPALLREHSERIVRLEAESLEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPSQ
Ga0210384_107147052	3300021432	Soil	MSDFERAIKDLQDTLIVIAEIEKRQSAMLREHSERIVRLEAESLEFRRRTEQNLAEIADKLNGLIGNVGGMNPPPPQ
Ga0210390_114465391	3300021474	Soil	MNYEQAIKDLQDTLVVMAEMERRQSTMLREHAEMLRDTTVFRRRTDQNLAEITDKLNGLVGYVAEMPPPKPS
Ga0210398_105316412	3300021477	Soil	MNYEQAIKELQDNLIVIAEIERRQSALLREHAEMLHQHNQHFGEILEFRRRTDQNLAEITDKLNGLIGYVDGLPPSRPS
Ga0210409_101756012	3300021559	Soil	MSSIERAIKDLQDAMIVIAEIEKRQSAMLREHAEHLGELLEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPSQ
Ga0213851_12265171	3300021860	Watersheds	MKAFGHGIVMNYEQAIQDLQDNLVVIAEIERRQSAMLREHAEHLGEILEFRRRTEQNLTEAAEFRRRTDQNLAEITDKLNGLIGYMDGLRPPRV
Ga0213853_110603802	3300021861	Watersheds	MKAFGHGIVMNYEQAIQDLQDNLVVIAEIERRQSAMLREHAEHLGEILEFRRRTEQNLTEAAEFRRRTDQNLAEITDKLNGLIGYIDGQRPPVA
Ga0242658_12357761	3300022530	Soil	MNVENAIKELQGNLLVIAEIERRQSELLRTHSELIDEGAVFRLRTEQNLAEITDKLNGLICYVD
Ga0212123_106445291	3300022557	Iron-Sulfur Acid Spring	MDYEQAIKDRQDNLIVIAEIERRQSRLLRDHSEYLGELTEYRRRIDHNLAEITDKLNGLVGYVDGLRPPPAP
Ga0209108_102463691	3300025165	Soil	MNYDQVIRELQDNLIVIAEIERRQSAMLKEHAEHLGEILGWQRRTDQNLSEITDKLNGLIGYVDGQRPPRPS
Ga0209640_101657674	3300025324	Soil	MNYDQVIRELQDNLIVIAEIERRQSAMLKVHAEHLGEILGWQRRTDQNLSEITDKLNGLIGYVDGQRPPRPS
Ga0207692_101931802	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MDYEHAIKDLQDTLLVIAEIERRQSRMLLEHSEHIGELIEYRRRIDHNLAEITDKLNGLIGYVDGLRPPPPS
Ga0207671_112981511	3300025914	Corn Rhizosphere	MDYEHAIKDLQDTLLVIAEIERRQSRMLLEHSEHIGELIEYRRRIDHNLAEITDKLNGLIGYVDGFRPPPAPAM
Ga0207687_102619622	3300025927	Miscanthus Rhizosphere	VAYEQAIKDLQDNLVVIAEIEKRQSRMLREHSEYLGEMTEYRRRIDHNLAEITDKLNGLIGYVDGFRPPPAP
Ga0207687_105386572	3300025927	Miscanthus Rhizosphere	MNYEQAIRELQDNVIVIAEIEKRQSALLKEHSEYIFRIDQNLAEITDKLNGLIGYMDGHGPRRPS
Ga0207687_109451592	3300025927	Miscanthus Rhizosphere	MNYEQAIRELQDNLIVIAEIEKRQSALLKEHSENIFRIDQNLAEITDKLNGLIGYVDGQGPRRPS
Ga0207700_102117903	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MACQNRESRIAPGFMSNPGFMSNMEQAIKDLQDALVVIAEIEKRQSAMLRDHAEHLGELLEFRSRTDQNLAENTAKLNGLIGSVGGMHPPPQ
Ga0207686_100031876	3300025934	Miscanthus Rhizosphere	MNYEQAIRELQDNLIVIAEIEKRQSALLKEHSEYIFRIDQNLAEITDKLNGLIGYMDGHGPRRPS
Ga0207686_100042743	3300025934	Miscanthus Rhizosphere	VGYGRTLFCMNYEQAIKDLQDNLVVIAEIERRQSRMLLEHSEYLGEMTEYRRRIDHNLAEITDKLNGLIGYVDGFRTPPAP
Ga0207686_100459063	3300025934	Miscanthus Rhizosphere	VGDRRTILPVAYEQAIKDLQDNLVVIAEIEKRQSRMLREHSEYLGEMTEYRRRIDHNLEEITDKLNGLIGYVDGFRPPPAP
Ga0207686_106313892	3300025934	Miscanthus Rhizosphere	MDYEHAIKDLQDTLLVIAEIERRQSRMLLEHSEHIGELIEYRRRIDHNLAEITDKLNGLIGYVDGFRPPPAP
Ga0209580_103301101	3300027842	Surface Soil	MSNMEQAIKDLQDTLIVISEIEKRQSALLREHSERIVRLEAESLEFRRRTDQNLAEITDKLNGLIGYVGGMYPPRPPQ
Ga0209180_107541071	3300027846	Vadose Zone Soil	MSNIEQAIKDLQDTLIVIAEIGKRQSALLREHSQRIVNIEQHLEHVARLEGESAEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPSQ
Ga0209274_103921452	3300027853	Soil	VTNIEKAIKELQDNLLVIAEIEKRQSALLREHSELHPENVEFRRRTEQNLAEITDKLNGLIGYTDGLHRPPSQ
Ga0209166_102821142	3300027857	Surface Soil	MSNIEQAIKDLQDAMIVIAEIEKRQSALLREHAEHLGELLEFRRRTDQNLAEITDKLNGLIGYVGGMNPPPS
Ga0209167_1000143410	3300027867	Surface Soil	MNYEQAIKELQDTLIVIGEIERRQSALLREHSELLSEHADMLRDTEVFRRRTDQNLAEITDKLNGLIGYVDGMPPPRPS
Ga0209167_100017393	3300027867	Surface Soil	MSNIGRAIEDLQDTLIVVAEIEKRQSAMLRENSERIVRFEAESLEFRRRTDQNLAEITDKLDGFIGYVGWMNPPRSQ
Ga0209579_101060121	3300027869	Surface Soil	MNYQEAINDLQDTLVVMAEMERRQSVMLCYHAETLLKHDEMLRDTEEFRRRTEQNLAEITDKLNGLIGYVDGMPPRRPS
Ga0209590_106321311	3300027882	Vadose Zone Soil	SNFEQAIKDLQDTLIVIAEIEKRQSALLREHSQRIVNIEQHLEHVARLEAESAEFRRRTDQNLAEITDKLNGLIGYVGGVNPPPSQ
Ga0209415_100007495	3300027905	Peatlands Soil	MNYQEAIKDLQDTLVVIGEIERRQSVMLREHAEMLRKHAEMLRKHDLYHGEILEFQRRTDQNLAEITDKLNGLIGYVDGMPPPRPS
Ga0209415_108740962	3300027905	Peatlands Soil	MNYEQAIKDLQDNLIVIAEIERRQSKLLREHSEMLHDLIEFRRRTEQNLAEITDKLNGLIGYVDGLPPSRPS
Ga0302147_103150432	3300028566	Bog	MNYEETIKDLQDTLAVIGEIERRQSALLLEHSEMLKKHVEMLRDTEEYRRRTDQNLAEITDKLKGLI
Ga0308309_114055472	3300028906	Soil	ELQDNLVVIAEIERRQSAMLREHAEILHETILFRRRTEQNLAEITDKLNGLIGYVDGLPPSRPS
Ga0265762_11738582	3300030760	Soil	VNYEQAAKELQDNLIVIADIERRQSAMLREHAEMLHQHNLHSGESLEFRRRTGQNLAEITDKLNGLIGYVDGLPPSRPS
Ga0170834_1005574062	3300031057	Forest Soil	MSNIEQAIKDLQDTLIVIAEIEKRQSAMLREHSERIVRLEAESLEFRRRTDQNLAEITDKLNGLIGYVG
Ga0170834_1039780751	3300031057	Forest Soil	MNVENVIKELQDNLLVIAEIERRQSQLLREHSELIAEGAVFQRRTEQNLAEITDKLNGLIGYIDGMQPPKKQ
Ga0170834_1053470951	3300031057	Forest Soil	HVPCENSYSGIAPSFMSNVERAIKDLQDAMIVIAEIEKRQSVMLREHAEHLGELLEFSRRTDQNLAEITDKLNGLIGYDGGMNPPPSQ
Ga0170823_136428652	3300031128	Forest Soil	MNVENVIKELQDNLLVIAEIERRQSQLLREHSELIAEGAVFQRRTEQNLAEITDKLNGLIGYIDGMPPPGKN
Ga0170824_1175086361	3300031231	Forest Soil	HVPCENSYSGIAPSFMSNVERAIKDLQDAMIVIAEIEKRQSVMLREHAEHLGELLEFRRRTDQNLAEITDKLNGLIGYDGGMNPPPSQ
Ga0302324_1021227772	3300031236	Palsa	MNVENAIKELQDNLLVIAEIERRQSELLRRHSELIAEGDVFQRRTQQNLAEITDKLNGLIGYIDGMNPPDKN
Ga0302140_108738891	3300031261	Bog	VIGEIERRQSALLLEHSEMLKKHVEMLRDTEEYRRRTDQNLAEITDKLKGLIGYVAGTPPPQPS
Ga0310686_1054356722	3300031708	Soil	MREWERYRHIVVMNYEQAIKELQDNLIVIAQIERRQSAMLREHAEMLHQHNLHYGEILEFRRRTDQNLA
Ga0310686_1125135143	3300031708	Soil	MNYKEAIKDLQDTLVVMAEMERRQSVMLRQHAELLSEHAEMLRDTEVFRRRTDQNLAEITDKLNCL
Ga0307477_109298882	3300031753	Hardwood Forest Soil	FERAIQDLRDTLIVIADIEKRQSAMLREHSERIVRLEAESLEFRRRTDQNLAEINDKLNGLIGYVGGMNPPATR
Ga0311301_1002530514	3300032160	Peatlands Soil	MNLEQAVKDLQDNLIVIAEIERRQSALLREHSEHLAEILEFRRRTDQNLAEITDKLNGLIGYVSGIKPPPQ
Ga0348332_128348371	3300032515	Plant Litter	MNYEQAVKELKGTLIVMAEMERRQSVMLREHAEMLRDTVEFRRRTDQNLAEITDKLNGLIGYVAGMPPPRPS
Ga0348332_128348372	3300032515	Plant Litter	LQDTLVVMAEMERRQSVMLRQHAELLSEHAEMLRDTEVFRRRTDQNLAEITDKLNGLIGYVDGMPPPRPS
Ga0348332_139447591	3300032515	Plant Litter	MNYEQAIKELQDNLVVIAEIERRQSAMLREHAEMLHDTLEFRRRTDQNLAEITDKLNGLI
Ga0348332_139447592	3300032515	Plant Litter	MNYEQAVKDLQDNLVVMAEMERRQSAMLRDHAEMLHDHAEMLHNHAEMLRDTSEFRRRTDQNLAEITDKLNGLIGYVAGMPPPRPS
Ga0335085_110033342	3300032770	Soil	MDNVEKAIRELQDNLIVLSEIERRQSKILREQSEHVGELLEFRRRTDQNLAEITDKLNGLIGYVGGLKPPPTN
Ga0310810_101227222	3300033412	Soil	MDYEQAIKDLQDNLVVIAEIERRQSRLLLEHSEYLGELTEYRRRIDHNLAEITDKLNGLIGYVDGLRPPPAP
Ga0326726_103548362	3300033433	Peat Soil	MDEGCTIFRMDYEQAIKDLQDNLVVIAEIERRQSRMLLEHSEHIGELIEYRRRIDHNLAEITDKLNGLIGYVDGLGAPPAP
Ga0314861_0012882_879_1103	3300033977	Peatland	MNNIERAVKDLQDNLVVLAEIERRQFSILREDSEHLGELLEFRRRTGQNLAEITDKLNGLIGYVAGLKPPQRPQ
Ga0326723_0078158_530_748	3300034090	Peat Soil	MDYEQAIKDLQDNLVVIAEIERRQSRMLLEHSEHIGELIEYRRRIDHNLAEITDKLNGLIGYVDGLGAPPAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056448

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences