Metagenome / Metatranscriptome Family F056434

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056434
Family Type	Metagenome / Metatranscriptome
Number of Sequences	137
Average Sequence Length	44 residues
Representative Sequence	MSKMSAKTRYEAFSEWHKWAQNHYKSMKKKKKARPDYMAYTENDY
Number of Associated Samples	73
Number of Associated Scaffolds	137

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.46 %
% of genes near scaffold ends (potentially truncated)	24.82 %
% of genes from short scaffolds (< 2000 bps)	73.72 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.584 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (40.876 % of family members)
Environment Ontology (ENVO)	Unclassified (45.255 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (51.095 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.88% β-sheet: 0.00% Coil/Unstructured: 67.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 137 Family Scaffolds
PF01832	Glucosaminidase	16.79
PF00294	PfkB	9.49
PF03567	Sulfotransfer_2	4.38
PF00118	Cpn60_TCP1	2.19
PF13640	2OG-FeII_Oxy_3	2.19
PF01258	zf-dskA_traR	1.46
PF13661	2OG-FeII_Oxy_4	1.46
PF05050	Methyltransf_21	0.73
PF00132	Hexapep	0.73
PF00534	Glycos_transf_1	0.73
PF01041	DegT_DnrJ_EryC1	0.73
PF12705	PDDEXK_1	0.73

COG ID	Name	Functional Category	% Frequency in 137 Family Scaffolds
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	2.19
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	1.46
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.73
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.73
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.73
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.73
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.73
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
All Organisms	root	All Organisms	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
cellular organisms	root	All Organisms → cellular organisms	34.31 %
Viruses	superkingdom	All Organisms → Viruses	5.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.92 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	9.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.92 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.19 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	9.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.92 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.19 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.73 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	9.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.92 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.19 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	1.46 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	9.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.92 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.19 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	1.46 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	9.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.92 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.19 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1.46 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	8.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.92 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.19 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1.46 %
unclassified Flavobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales	0.73 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Winogradskyella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella	6.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.92 %
unclassified Flavobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae	2.19 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.19 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1.46 %
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	0.73 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
unclassified Winogradskyella	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella	6.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.92 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2.19 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.19 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1.46 %
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	0.73 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.58 %
Winogradskyella sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	6.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.92 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2.19 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.19 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1.46 %
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	0.73 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.73 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000929\|NpDRAFT_10036437	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300001934\|GOS2267_101647	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1953	Open in IMG/M
3300002835\|B570J40625_100000693	Not Available	58555	Open in IMG/M
3300004240\|Ga0007787_10604849	Not Available	549	Open in IMG/M
3300005077\|Ga0071116_1068111	Not Available	2061	Open in IMG/M
3300006802\|Ga0070749_10081459	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	1932	Open in IMG/M
3300006802\|Ga0070749_10134076	All Organisms → cellular organisms → Bacteria	1449	Open in IMG/M
3300006802\|Ga0070749_10197089	Not Available	1155	Open in IMG/M
3300006802\|Ga0070749_10223228	Not Available	1073	Open in IMG/M
3300006802\|Ga0070749_10437107	Not Available	718	Open in IMG/M
3300006802\|Ga0070749_10495811	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	666	Open in IMG/M
3300006802\|Ga0070749_10511287	Not Available	653	Open in IMG/M
3300006802\|Ga0070749_10513717	Not Available	652	Open in IMG/M
3300006802\|Ga0070749_10557933	Not Available	620	Open in IMG/M
3300006802\|Ga0070749_10640533	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300006802\|Ga0070749_10692377	Not Available	545	Open in IMG/M
3300006802\|Ga0070749_10785043	Not Available	506	Open in IMG/M
3300006919\|Ga0070746_10056515	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2035	Open in IMG/M
3300006919\|Ga0070746_10065622	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	1863	Open in IMG/M
3300007538\|Ga0099851_1000132	Not Available	30103	Open in IMG/M
3300007538\|Ga0099851_1015947	Not Available	3052	Open in IMG/M
3300007538\|Ga0099851_1021428	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	2613	Open in IMG/M
3300007538\|Ga0099851_1121353	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300007538\|Ga0099851_1223849	Not Available	679	Open in IMG/M
3300007538\|Ga0099851_1343236	Not Available	522	Open in IMG/M
3300007540\|Ga0099847_1081395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	997	Open in IMG/M
3300007541\|Ga0099848_1004335	All Organisms → cellular organisms → Bacteria	6521	Open in IMG/M
3300007541\|Ga0099848_1015286	Not Available	3324	Open in IMG/M
3300007541\|Ga0099848_1072990	Not Available	1348	Open in IMG/M
3300007541\|Ga0099848_1087647	Not Available	1206	Open in IMG/M
3300007541\|Ga0099848_1139578	Not Available	903	Open in IMG/M
3300007541\|Ga0099848_1283069	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300007541\|Ga0099848_1291501	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300007640\|Ga0070751_1176153	Not Available	842	Open in IMG/M
3300007960\|Ga0099850_1019391	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	3030	Open in IMG/M
3300007960\|Ga0099850_1098157	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1211	Open in IMG/M
3300007960\|Ga0099850_1260754	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	666	Open in IMG/M
3300008107\|Ga0114340_1068186	Not Available	1505	Open in IMG/M
3300008108\|Ga0114341_10108578	Not Available	1674	Open in IMG/M
3300008110\|Ga0114343_1078450	Not Available	1192	Open in IMG/M
3300008116\|Ga0114350_1028674	All Organisms → cellular organisms → Bacteria	2222	Open in IMG/M
3300008116\|Ga0114350_1168342	Not Available	582	Open in IMG/M
3300008259\|Ga0114841_1195566	Not Available	738	Open in IMG/M
3300008259\|Ga0114841_1206948	Not Available	700	Open in IMG/M
3300008259\|Ga0114841_1238883	Not Available	608	Open in IMG/M
3300008266\|Ga0114363_1185245	Not Available	656	Open in IMG/M
3300008267\|Ga0114364_1002377	Not Available	10707	Open in IMG/M
3300008267\|Ga0114364_1005122	All Organisms → cellular organisms → Bacteria	6722	Open in IMG/M
3300008267\|Ga0114364_1064386	Not Available	1258	Open in IMG/M
3300008267\|Ga0114364_1108314	Not Available	850	Open in IMG/M
3300008267\|Ga0114364_1154851	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300008448\|Ga0114876_1042829	Not Available	2109	Open in IMG/M
3300008450\|Ga0114880_1006340	Not Available	6133	Open in IMG/M
3300009075\|Ga0105090_10263861	Not Available	1058	Open in IMG/M
3300009082\|Ga0105099_10197194	Not Available	1151	Open in IMG/M
3300009149\|Ga0114918_10574958	Not Available	597	Open in IMG/M
3300009170\|Ga0105096_10352730	Not Available	755	Open in IMG/M
3300010318\|Ga0136656_1239697	Not Available	599	Open in IMG/M
3300010354\|Ga0129333_10186600	All Organisms → Viruses → Predicted Viral	1890	Open in IMG/M
3300010354\|Ga0129333_11028225	Not Available	691	Open in IMG/M
3300010354\|Ga0129333_11416627	Not Available	571	Open in IMG/M
(restricted) 3300013125\|Ga0172369_10437836	Not Available	648	Open in IMG/M
(restricted) 3300013127\|Ga0172365_10078079	All Organisms → cellular organisms → Bacteria	2139	Open in IMG/M
(restricted) 3300013131\|Ga0172373_10185017	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300017754\|Ga0181344_1019289	All Organisms → cellular organisms → Bacteria	2127	Open in IMG/M
3300017754\|Ga0181344_1032218	Not Available	1600	Open in IMG/M
3300017754\|Ga0181344_1197078	Not Available	566	Open in IMG/M
3300017766\|Ga0181343_1177088	Not Available	589	Open in IMG/M
3300017774\|Ga0181358_1001508	Not Available	10664	Open in IMG/M
3300017785\|Ga0181355_1225524	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300017788\|Ga0169931_10111857	All Organisms → Viruses → Predicted Viral	2578	Open in IMG/M
3300018775\|Ga0188848_1006908	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1269	Open in IMG/M
3300019784\|Ga0181359_1000630	Not Available	8196	Open in IMG/M
3300019784\|Ga0181359_1002088	Not Available	5685	Open in IMG/M
3300019784\|Ga0181359_1112906	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300019784\|Ga0181359_1169037	Not Available	733	Open in IMG/M
3300020161\|Ga0211726_10270126	All Organisms → cellular organisms → Bacteria	1937	Open in IMG/M
3300020179\|Ga0194134_10065919	Not Available	1911	Open in IMG/M
3300020183\|Ga0194115_10015601	Not Available	6378	Open in IMG/M
3300020558\|Ga0208362_1062723	Not Available	569	Open in IMG/M
3300021376\|Ga0194130_10079017	Not Available	2210	Open in IMG/M
3300021960\|Ga0222715_10014124	Not Available	6207	Open in IMG/M
3300021960\|Ga0222715_10209674	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1160	Open in IMG/M
3300021960\|Ga0222715_10276531	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	964	Open in IMG/M
3300021961\|Ga0222714_10048552	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	2962	Open in IMG/M
3300021961\|Ga0222714_10069198	Not Available	2347	Open in IMG/M
3300021961\|Ga0222714_10070236	Not Available	2324	Open in IMG/M
3300021962\|Ga0222713_10013590	Not Available	7159	Open in IMG/M
3300021964\|Ga0222719_10649173	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	605	Open in IMG/M
3300022057\|Ga0212025_1043774	Not Available	770	Open in IMG/M
3300022057\|Ga0212025_1054462	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300022063\|Ga0212029_1012843	All Organisms → Viruses → Predicted Viral	1057	Open in IMG/M
3300022063\|Ga0212029_1045689	Not Available	631	Open in IMG/M
3300022167\|Ga0212020_1012071	All Organisms → cellular organisms → Bacteria	1307	Open in IMG/M
3300022167\|Ga0212020_1064854	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300022176\|Ga0212031_1004873	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1674	Open in IMG/M
3300022176\|Ga0212031_1041297	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300022179\|Ga0181353_1004334	All Organisms → cellular organisms → Bacteria	3266	Open in IMG/M
3300022179\|Ga0181353_1049137	Not Available	1107	Open in IMG/M
3300022198\|Ga0196905_1145921	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300022198\|Ga0196905_1191554	Not Available	515	Open in IMG/M
3300024239\|Ga0247724_1009603	Not Available	1438	Open in IMG/M
3300025543\|Ga0208303_1013794	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	2425	Open in IMG/M
3300025543\|Ga0208303_1115201	Not Available	548	Open in IMG/M
3300025646\|Ga0208161_1006311	All Organisms → cellular organisms → Bacteria	5319	Open in IMG/M
3300025646\|Ga0208161_1012216	Not Available	3515	Open in IMG/M
3300025646\|Ga0208161_1019257	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	2601	Open in IMG/M
3300025646\|Ga0208161_1027707	All Organisms → cellular organisms → Bacteria	2030	Open in IMG/M
3300025646\|Ga0208161_1069533	Not Available	1053	Open in IMG/M
3300025646\|Ga0208161_1157140	Not Available	561	Open in IMG/M
3300025655\|Ga0208795_1070557	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300025655\|Ga0208795_1081546	Not Available	895	Open in IMG/M
3300025655\|Ga0208795_1122832	Not Available	674	Open in IMG/M
3300025674\|Ga0208162_1064827	All Organisms → Viruses → Predicted Viral	1174	Open in IMG/M
3300025687\|Ga0208019_1064477	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1217	Open in IMG/M
3300027792\|Ga0209287_10370502	Not Available	550	Open in IMG/M
3300031578\|Ga0307376_10080401	All Organisms → cellular organisms → Bacteria	2316	Open in IMG/M
3300031669\|Ga0307375_10352543	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300031758\|Ga0315907_10004886	Not Available	14845	Open in IMG/M
3300031758\|Ga0315907_10573506	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300031758\|Ga0315907_10701919	Not Available	769	Open in IMG/M
3300031758\|Ga0315907_11286225	Not Available	506	Open in IMG/M
3300031787\|Ga0315900_10783483	Not Available	660	Open in IMG/M
3300031787\|Ga0315900_11038593	Not Available	534	Open in IMG/M
3300031857\|Ga0315909_10150501	All Organisms → cellular organisms → Bacteria	1917	Open in IMG/M
3300031857\|Ga0315909_10501382	Not Available	838	Open in IMG/M
3300031857\|Ga0315909_10505580	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	833	Open in IMG/M
3300031857\|Ga0315909_10819016	Not Available	586	Open in IMG/M
3300031963\|Ga0315901_10380168	Not Available	1139	Open in IMG/M
3300032093\|Ga0315902_10136912	All Organisms → cellular organisms → Bacteria	2576	Open in IMG/M
3300032116\|Ga0315903_10206009	Not Available	1743	Open in IMG/M
3300034012\|Ga0334986_0412516	Not Available	684	Open in IMG/M
3300034018\|Ga0334985_0781689	Not Available	506	Open in IMG/M
3300034073\|Ga0310130_0282792	Not Available	526	Open in IMG/M
3300034105\|Ga0335035_0652661	Not Available	548	Open in IMG/M
3300034166\|Ga0335016_0442518	Not Available	747	Open in IMG/M
3300034418\|Ga0348337_130326	Not Available	751	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.08%
Terrestrial	Environmental → Terrestrial	2.92%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	51.82%
Freshwater	Environmental → Aquatic → Freshwater	45.26%
Soil	Environmental → Terrestrial → Soil	1.46%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.46%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	43.80%
Lake	Environmental → Aquatic → Freshwater → Lake	20.44%
Lentic	Environmental → Aquatic → Freshwater → Lentic	11.68%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	10.22%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.84%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.92%
Clay	Environmental → Terrestrial → Soil → Clay	1.46%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.46%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.73%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.73%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	43.80%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	19.71%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	10.22%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	10.22%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.84%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.92%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.46%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.46%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.46%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.73%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.73%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.73%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.73%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	40.88%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	10.22%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	10.22%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	9.49%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	5.84%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.11%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.92%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.92%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.46%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.46%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.73%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.73%
Sinkhole	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole	0.73%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.73%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.73%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.73%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	0.73%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.73%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000929	Marine plume microbial communities from the Columbia River - 15 PSU	Environmental	Open in IMG/M
3300001934	Estuary microbial communities from Chesapeake Bay, Maryland, USA - MOVE858	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental	Open in IMG/M
3300005077	Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental	Open in IMG/M
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental	Open in IMG/M
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental	Open in IMG/M
3300008259	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA	Environmental	Open in IMG/M
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental	Open in IMG/M
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental	Open in IMG/M
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300010318	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNA	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300013125 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_11.25m	Environmental	Open in IMG/M
3300013127 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm	Environmental	Open in IMG/M
3300013131 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m	Environmental	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300017766	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017788	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L	Environmental	Open in IMG/M
3300018775	Metatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020179	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m	Environmental	Open in IMG/M
3300020183	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface	Environmental	Open in IMG/M
3300020558	Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021376	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022057	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)	Environmental	Open in IMG/M
3300022063	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022167	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)	Environmental	Open in IMG/M
3300022176	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)	Environmental	Open in IMG/M
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental	Open in IMG/M
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental	Open in IMG/M
3300024239	Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E	Environmental	Open in IMG/M
3300025543	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025646	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025655	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300027792	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031787	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental	Open in IMG/M
3300034018	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021	Environmental	Open in IMG/M
3300034073	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL	Environmental	Open in IMG/M
3300034105	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127	Environmental	Open in IMG/M
3300034166	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079	Environmental	Open in IMG/M
3300034418	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
NpDRAFT_100364373	3300000929	Freshwater And Marine	MSKVSSKARYEAFSEWLKWAQNKYPSMKRKKKARPDYLVNRDGEY*
GOS2267_1016475	3300001934	Marine	MSKVSSKARYEAFMEWHKWAQNHYKSMKRKKKARPDYMLSNEDY*
B570J40625_10000069346	3300002835	Freshwater	MSKVSAKARYEAFSEWFKWAQNKYPSMKKKKKARPDYMMGNEEY*
Ga0007787_106048491	3300004240	Freshwater Lake	MSKVSSKSRYEAFSEWHKWAQNHYKSMKRKKKARPDYMLS
Ga0071116_10681111	3300005077	Sinkhole	MSKVSSKTRYEAFSEWHKWAQNHYKSMKRKKKARPDYMLSN
Ga0070749_100814593	3300006802	Aqueous	MSKVSGKTRYEAFMEWHKWAQHKYPIMKKKKKARPDYMAYTNDEY*
Ga0070749_101340764	3300006802	Aqueous	MSKMSAKTRYEAFSEWHKWASHRYQSMKKKKKARPDYMTYGSNEY*
Ga0070749_101970891	3300006802	Aqueous	MSKMSAKTRYQAFMEWHKWAQHKYPIMKKKKKARPEYLTYGTENEY*
Ga0070749_102232283	3300006802	Aqueous	MSKMSAKTRYEAFSEWHKWAQSQYKSMKKKKKARPDYMAY
Ga0070749_104371073	3300006802	Aqueous	MSKMSAKTRYEAFSEWHKWAQHKYPIMKKKKKARPDYMTYGAQNDY*
Ga0070749_104958113	3300006802	Aqueous	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPEYLAYASGNEY*
Ga0070749_105112871	3300006802	Aqueous	MSKMSAKTRYESFMEWHKWAQHKYPILKKKKKARPDYMTYGTNDEY*
Ga0070749_105137172	3300006802	Aqueous	MSKVSSKSRYEAFSEWHKWAQNHYKSMKRKKKARPDYMLSNEDY*
Ga0070749_105579332	3300006802	Aqueous	MSKMSAKTRYEAFMEWHKWAQNRYSSMKRKKKARPDYMAYGADNEY*
Ga0070749_106405331	3300006802	Aqueous	MSKMSAKTRYQAFTEWQNWAKHKYPIMRRKKKARPDYLTYGTNDEY*
Ga0070749_106923771	3300006802	Aqueous	MSKMSAKTRYEAFSEWHKWAQHKYPIMKKKKKARPDYMTYG
Ga0070749_107850433	3300006802	Aqueous	MSKVSGKTRYEAFMEWHKWAQHKYPIMKKKKKARPDYMAYANNEY*
Ga0070746_100565152	3300006919	Aqueous	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPDYMTYGANNEY*
Ga0070746_100656225	3300006919	Aqueous	MSKMSAKTRYEAFSEWHKWAQHKYPIMKKKKKPRPDYITYGTPNDY*
Ga0099851_100013240	3300007538	Aqueous	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPDYMTYGAQNDY*
Ga0099851_10159476	3300007538	Aqueous	MSKMSAKTRYEAFSEWHKWAQSQYKSMKKKKKARPDYMAYAENDY*
Ga0099851_10214288	3300007538	Aqueous	MSKVSSKARYVAFMEWHKWAQNHYKSMKRKKKARPDYLLSNEDY*
Ga0099851_11213531	3300007538	Aqueous	MSKMSAKTRYEAFSEWHKWASHRYQSMKKKKKTRPDYMTYGSNEY*
Ga0099851_12238493	3300007538	Aqueous	MSKVSSKARYEAFMEWHKWAQNHYKSMKRKKKARPDYLLSNEDY*
Ga0099851_13432363	3300007538	Aqueous	MSKMSAKTRYEAFMEWHKWAQHKYPSMKRKKKPQVPDYMRLNEEY*
Ga0099847_10813951	3300007540	Aqueous	INVIKIVNVMSKMSAKTRYEAFSEWHKWAQHKYPIMKKKKKARPDYMTYGTGNDY*
Ga0099848_100433514	3300007541	Aqueous	MSKVSSKARYEAFMEWHKWASQRYNSMKRKKKARPDYLLSNENY*
Ga0099848_10152861	3300007541	Aqueous	SVIKIVNVMSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPDYMTYGAQNDY*
Ga0099848_10729901	3300007541	Aqueous	RYETFTEWHKWASNRYQSMRKKKKAQPDYLSKEEY*
Ga0099848_10876474	3300007541	Aqueous	MSKMSAKTRYESFMEWHKWAQHKYPILKKKKKARPEYMTYGTNNEY*
Ga0099848_11395784	3300007541	Aqueous	MSKVSSKARYEAFMEWHKWAQNHYKSMKRKKKARPDYLL
Ga0099848_12830694	3300007541	Aqueous	MSKMSAKTRYQAFTEWQNWAKHKYPIMRRKKKARPDYMTYGTNNEY*
Ga0099848_12915011	3300007541	Aqueous	TRYEAFMEWHKWAQHKYPIMKKKKKARPDYMTYGANNEY*
Ga0070751_11761533	3300007640	Aqueous	MSTKTRYEAFSEWHKWAQHKYPIMKKKKKARPDYMTYGAQNDY*
Ga0099850_10193911	3300007960	Aqueous	KIVIVMSKMSAKTRYQAFTEWQNWAKHKYPIMRRKKKARPDYLTYGTNDEY*
Ga0099850_10981571	3300007960	Aqueous	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPDYMTYG
Ga0099850_12607543	3300007960	Aqueous	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPEYLTYASGNEY*
Ga0114340_10681863	3300008107	Freshwater, Plankton	MSKVSAKARYESFSEWHKWAQNHYKSMKKKKKVRPDYMAYGADSEY*
Ga0114341_101085782	3300008108	Freshwater, Plankton	MSKVSSKARYEAFSEWLKWAQTKYPSMKRKKKARPDYLLSNEDY*
Ga0114343_10784504	3300008110	Freshwater, Plankton	MSKMSAKTRYEAFSEWFKWAQTKYPSMKCKKKARPDYLPLNEDY*
Ga0114350_10286744	3300008116	Freshwater, Plankton	MSKVSSKARYEAFQEWHKWAQNHYKSMKRKKKARPDYMLSNEDY*
Ga0114350_11683423	3300008116	Freshwater, Plankton	MSKVSSKARYEAFSEWLKWAQTKYPSMKRKKKPRPDYLAYAEGDH*
Ga0114841_11955663	3300008259	Freshwater, Plankton	MSKVSSKTRYEVFMEWHKWAQHKYSSMKRKKKPLVPDYMRLDEEY*
Ga0114841_12069484	3300008259	Freshwater, Plankton	MSKVSSKARYEAFSEWLKWAQTKYPSMKRKKKARPDYLAYAEGDH*
Ga0114841_12388832	3300008259	Freshwater, Plankton	MSKVSGKTRYEAFSEWHKWAQNHYKSMKRKKKARPDYMAYGAENEY*
Ga0114363_11852453	3300008266	Freshwater, Plankton	MSKMSAKTRYEAFSEWHKWAQNHYKSMKRKKKARPDYMLSNEDY*
Ga0114364_10023773	3300008267	Freshwater, Plankton	MSKVSSKARYIAFQEWYKWASQRYTSMKRKKKVRPDHLAYGTENDY*
Ga0114364_10051222	3300008267	Freshwater, Plankton	MSKMSAKTRYEAFMEWHKWAQTQYKSMKKKKKARPDYMVYTENDY*
Ga0114364_10643863	3300008267	Freshwater, Plankton	MSKVSSKSRYEAFSEWHKWAQTQYKSMKKKKKARPDYMAYAENDY*
Ga0114364_11083142	3300008267	Freshwater, Plankton	MSKVSSKARYEAFSEWLKWAQNKYPSMKRKKKARPDYLLSNEGH*
Ga0114364_11548512	3300008267	Freshwater, Plankton	MSKMSAKTRYEAFSEWHKWAQSQYKSMKKKKKARPDYMAYTENDY*
Ga0114876_10428296	3300008448	Freshwater Lake	MSKVSSKSRYEAFSEWHKWAQTRYKSMKRKKKLQVPDYLKVDEEY*
Ga0114880_100634016	3300008450	Freshwater Lake	MSKVSSKTRYEAFSEWHKWAQTRYQSMKRKKKARPDYMAYGADNEY*
Ga0105090_102638614	3300009075	Freshwater Sediment	MSKVSSKARYEAFSEWLKWAQTKYPSMKRKKKVRPDYLAYGADSDN*
Ga0105099_101971943	3300009082	Freshwater Sediment	MSKASAKARYETFSEWHKWAQHKYQSMKKKKKARPDYMVGNEEY*
Ga0114918_105749583	3300009149	Deep Subsurface	MSKVSSKARYEAFSEWLKWAQTKYPSMKRKRKARPDYLSHGNGEY*
Ga0105096_103527301	3300009170	Freshwater Sediment	MSKVSSKARYEAFSEWLKWAQTKYPSMKRKKKARPDYLLS
Ga0136656_12396971	3300010318	Freshwater To Marine Saline Gradient	MSKVSGKTRYEVFQEWHKWASNRYQSMKKKKKAQPDYLSKEEY*
Ga0129333_101866002	3300010354	Freshwater To Marine Saline Gradient	MSKVSAKTRYEVFQEWHKWASNRYQSMKKKKRTQPDYLSKEEY*
Ga0129333_110282251	3300010354	Freshwater To Marine Saline Gradient	MSKVSAKTRYETFMEWHKWASNRYQSMRKKKKAQPDYLPKEEY*
Ga0129333_114166272	3300010354	Freshwater To Marine Saline Gradient	MSKVSAKTRYETFMEWHKWASNRYQSMKKKKRTQPDYSTKEEY*
(restricted) Ga0172369_104378363	3300013125	Freshwater	MSKVSAKARYEAFSEWHKWAQVHYKSMKKKKKARPDYMLSNEDY*
(restricted) Ga0172365_100780794	3300013127	Sediment	MSKVSAKARYEAFSEWHKWAQVHYKSMKKKKKARPDYMLSNENY*
(restricted) Ga0172373_101850172	3300013131	Freshwater	MSKVSAKARYEAFSEWHKWAQFHYKSMKKKKKARPDYMLSNEDY*
Ga0181344_10192891	3300017754	Freshwater Lake	MSKVSSKARYEAFSEWLKWTQTKYPSMKRKKKARPDYLPLNENY
Ga0181344_10322181	3300017754	Freshwater Lake	MSKVSSKARYEAFSEWFKWAQTKYPSMKRKKKVRPD
Ga0181344_11970782	3300017754	Freshwater Lake	MSKVSSKSRYEAFSEWHKWAQNHYKSMKRKKKARPD
Ga0181343_11770883	3300017766	Freshwater Lake	SSKARYEAFSEWHKWAQTRYKSMKRKKKLQAPDYLKVDEEY
Ga0181358_100150815	3300017774	Freshwater Lake	MSKVSSKARYIAFQEWYKWASQRYTSMKRKKKVRPDHLAYGTENDN
Ga0181355_12255242	3300017785	Freshwater Lake	METILVLAIVMSKMSAKTRYEAFSEWHKWAQNHYKSMKKKKKARPDYMAYTENDY
Ga0169931_101118573	3300017788	Freshwater	MSKVSAKARYEAFSEWHKWAQVHYKSMKKKKKARPDYMLSNENY
Ga0188848_10069084	3300018775	Freshwater Lake	MSKVSSKARYEAFMEWHKWASQRYNSMKRKKKARPDYLVNGDGEY
Ga0181359_100063015	3300019784	Freshwater Lake	MSKMSAKTRYEAFSEWHKWAQYQYKSMKKKKKARPDYMAYAENDY
Ga0181359_10020885	3300019784	Freshwater Lake	MSKMSAKTRYEAFMEWHKWAQTQYKSMKKKKKARPDYMVYTENDY
Ga0181359_11129062	3300019784	Freshwater Lake	MSKMSAKTRYEAFSEWHKWAQNHYKSMKKKKKARPDYMAYTENDY
Ga0181359_11690373	3300019784	Freshwater Lake	MSKVSSKSRYEAFSEWHKWAQNHYKSMKRKKKARPDYMLSNEDY
Ga0211726_102701263	3300020161	Freshwater	MSKVSSKARYIAFQEWYKWASQRYTSMKRKKKVRPDHLAYGTENDY
Ga0194134_100659196	3300020179	Freshwater Lake	MSKASAKARYEAFSEWHKWASQRYNSMKRKKKARPDYMLSNENY
Ga0194115_100156017	3300020183	Freshwater Lake	MSKVSAKARYEAFSEWHKWAQFHYKSMKKKKKARPDYMLSNEDY
Ga0208362_10627231	3300020558	Freshwater	MSKVSAKARYEAFSEWFKWAQNKYPSMKKKKKARPD
Ga0194130_100790177	3300021376	Freshwater Lake	MSKVSAKARYEAFSEWHKWAQFHYKSMKKKKKARPDYMLSNENY
Ga0222715_100141244	3300021960	Estuarine Water	MSKMSAKTRYEAFSEWHKWASHRYQSMKKKKKARPDYMTYGSNEH
Ga0222715_102096743	3300021960	Estuarine Water	MSKVSSKSRYEAFMEWHKWAQHKYSSMKRKKKPLVPDYMRLDEEY
Ga0222715_102765313	3300021960	Estuarine Water	MSKMSAKTRYQAFMEWHKWAQHKYPIMKKKKKARPDYITYGTPNDY
Ga0222714_100485529	3300021961	Estuarine Water	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPDYIAYASENDY
Ga0222714_100691983	3300021961	Estuarine Water	MSKVSGKTRYEAFSEWHKWAQNHYKSMKRKKKARPDYMLSNEDY
Ga0222714_100702362	3300021961	Estuarine Water	MSKVSGKTRYEVFQEWHKWASNRYQSMKKKKKAQPDYLSKEDY
Ga0222713_1001359013	3300021962	Estuarine Water	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPDYIAYTSENDY
Ga0222719_106491733	3300021964	Estuarine Water	MSKMSAKTRYEAFSEWHKWAQHKYPIMKKKKKARPDYMTYGAQNDY
Ga0212025_10437743	3300022057	Aqueous	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPDYMTYGAQNDY
Ga0212025_10544621	3300022057	Aqueous	RKTRYEAFSEWHKWASHRYQSMKKKKKARPDYMTYGSNEY
Ga0212029_10128433	3300022063	Aqueous	MSKMSAKTRYEAFSEWHKWAQSQYKSMKKKKKARPDYMAYAENDY
Ga0212029_10456892	3300022063	Aqueous	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPEYLAYASGNEY
Ga0212020_10120712	3300022167	Aqueous	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPDYMTYGANNEY
Ga0212020_10648543	3300022167	Aqueous	MSKMSAKTRYEAFSEWHKWASHRYQSMKKKKKARPDYMTYGSNEY
Ga0212031_10048733	3300022176	Aqueous	MSKMSAKTRYQAFSEWHKWASHRYQSMKKKKKTRPDYMTYGSNEY
Ga0212031_10412973	3300022176	Aqueous	MSKMSAKTRYEAFSEWHKWAQHKYPIMKKKKKARPDYMTYGAENEY
Ga0181353_10043343	3300022179	Freshwater Lake	MSKMSAKTRYEAFSEWHKWAQSQYKSMKKKKKARPDYMAYTENDY
Ga0181353_10491374	3300022179	Freshwater Lake	MSKVSSKARYEAFSEWYKWAQSQYKSLKRKKKVRPDHSAYAEGEY
Ga0196905_11459211	3300022198	Aqueous	KIVIVMSKMSAKTRYEAFSEWHKWAQHKYPILKKKKKARPDYMTYGTNNEY
Ga0196905_11915542	3300022198	Aqueous	MSKVSSKTRYEVFMEWHKWAQHKYPSMKPKKKVMPDYMR
Ga0247724_10096035	3300024239	Deep Subsurface Sediment	MSKVSSKARYEAFSEWLKWAQNKYPSMKRKKKARPDYLLSNEDH
Ga0208303_10137942	3300025543	Aqueous	MSKMSAKTRYQAFMEWHKWAQHKYPIMKKKKKARPEYLTYGTENEY
Ga0208303_11152013	3300025543	Aqueous	INVIKIVNVMSKMSAKTRYEAFSEWHKWAQHKYPIMKKKKKARPDYMTYGTGNDY
Ga0208161_10063116	3300025646	Aqueous	MSKVSSKARYEAFMEWHKWASQRYNSMKRKKKARPDYLLSNENY
Ga0208161_101221613	3300025646	Aqueous	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPEYLTYASGNEY
Ga0208161_10192577	3300025646	Aqueous	MSKVSSKARYVAFMEWHKWAQNHYKSMKRKKKARPDYLLSNEDY
Ga0208161_10277075	3300025646	Aqueous	IVIVMSKMSAKTRYEAFSEWHKWASHRYQSMKKKKKTRPDYMTYGSNEY
Ga0208161_10695331	3300025646	Aqueous	MSKVSSKARYEAFMEWHKWAQNHYKSMKRKKKARPDYLLSNEDY
Ga0208161_11571402	3300025646	Aqueous	MSKMSAKTRYEAFSEWHKWAQVQYKSMKKKKKARPDYMAYAENDY
Ga0208795_10705573	3300025655	Aqueous	VSSKARYEAFMEWHKWAQNHYKSMKRKKKARPDYLLSNEDY
Ga0208795_10815464	3300025655	Aqueous	QINVIKIVIVMSKMSAKTRYESFMEWHKWAQHKYPILKKKKKARPEYMTYGTNNEY
Ga0208795_11228321	3300025655	Aqueous	MSKMSAKTRYESFMEWHKWAQHKYPILKKKKKARPDYMTYGTNDEY
Ga0208162_10648272	3300025674	Aqueous	MSKMSAKTRYEAFSEWHKWAQHKYPILKKKKKARPDYMTYGTNNEY
Ga0208019_10644773	3300025687	Aqueous	MSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPDYMTYGAQN
Ga0209287_103705022	3300027792	Freshwater Sediment	MSKASAKARYETFSEWHKWAQHKYQSMKKKKKARPDYMVGNEEY
Ga0307376_100804012	3300031578	Soil	MSKISGKTRHEAFQEWHKWASQRYTSMKRKKKVRPDHLAYGTENDH
Ga0307375_103525432	3300031669	Soil	MSKMSAKTRYEAFMEWHKWAQHKYPIMKKKKKARPEHLTYGVENDY
Ga0315907_1000488620	3300031758	Freshwater	MSKVSSKTRYEVFMEWHKWAQHKYSSMKRKKKPLVPDYMRLDEEY
Ga0315907_105735063	3300031758	Freshwater	MSKMSAKTRYEAFSEWHKWAQNHYKSMKRKKKARPDYMLSNEDY
Ga0315907_107019192	3300031758	Freshwater	MSKVSGKTRYEAFSEWHKWAQNHYKSMKRKKKARPDYMAYGAENEY
Ga0315907_112862251	3300031758	Freshwater	MSKVSSKARYEAFSEWHKWAQTRYKSMKRKKKLQVPDYL
Ga0315900_107834833	3300031787	Freshwater	MSKVSSKARYEAFSEWHKWAQTRYKSMKRKKKLQVPDYLKVDEEY
Ga0315900_110385931	3300031787	Freshwater	MSKVSSKARYEAFSEWLKWAQNKYPSMKRKKKARPDYLLSNEGH
Ga0315909_101505014	3300031857	Freshwater	MSKVSSKARYEAFQEWHKWAQNHYKSMKRKKKARPDYMLSNEDY
Ga0315909_105013822	3300031857	Freshwater	MSKVSSKTRYEAFSEWHKWAQTRYQSMKRKKKARPDYMAYGADNEY
Ga0315909_105055801	3300031857	Freshwater	MSKMSAKTRYEAFMEWHKWAQTQYKSMKKKKKARPDYMV
Ga0315909_108190162	3300031857	Freshwater	MSKVSAKARYEAFQEWHKWAQTRYKSMKRKKKLQVPDYLKVDEEY
Ga0315901_103801685	3300031963	Freshwater	EAFSEWHKWAQTRYKSMKRKKKLQVPDYLKVDEEY
Ga0315902_101369121	3300032093	Freshwater	SKVSSKARYEAFSEWLKWAQTKYPSMKRKKKARPDYLLSNEDY
Ga0315903_102060091	3300032116	Freshwater	MSKMSAKTRYEAFMEWHKWAQTQYKSMKKKKKARPDYMVYTE
Ga0334986_0412516_478_612	3300034012	Freshwater	MSKVSSKARYEAFSEWLKWTQTKYPSMKRKKKARPDYLLPNEGY
Ga0334985_0781689_392_505	3300034018	Freshwater	MSKVSSKARYIAFQEWYKWASQRYTSMKRKKKVRPDHL
Ga0310130_0282792_254_394	3300034073	Fracking Water	MSKMSAKTRYEAFMEWHKWAQNRYQSMKRKKKARPDYMAYGADNEY
Ga0335035_0652661_373_513	3300034105	Freshwater	MSKVSSKARYIAFQEWYKWASQRYTSMKRKKKVRPDHLAYGTEDDN
Ga0335016_0442518_637_747	3300034166	Freshwater	MSKVSAKARYEAFSEWFKWAQNKYPSMKKKKKARPDY
Ga0348337_130326_3_113	3300034418	Aqueous	EAFSEWHKWAQHKYPIMKKKKKPRPDYITYGTPNDY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters