Metagenome / Metatranscriptome Family F056030

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F056030
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	47 residues
Representative Sequence	MSVAELRPAAAPGAIPTAEELVARARALAPKLRERAVRAERDRNIPQ
Number of Associated Samples	121
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.38 %
% of genes near scaffold ends (potentially truncated)	99.28 %
% of genes from short scaffolds (< 2000 bps)	94.20 %
Associated GOLD sequencing projects	116
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.043 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (9.420 % of family members)
Environment Ontology (ENVO)	Unclassified (20.290 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.348 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.00% β-sheet: 0.00% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00296	Bac_luciferase	42.03
PF13458	Peripla_BP_6	7.25
PF13561	adh_short_C2	2.17
PF06808	DctM	1.45
PF00005	ABC_tran	1.45
PF03401	TctC	0.72
PF12399	BCA_ABC_TP_C	0.72
PF00856	SET	0.72
PF08479	POTRA_2	0.72
PF05199	GMC_oxred_C	0.72
PF00345	PapD_N	0.72
PF00239	Resolvase	0.72
PF13546	DDE_5	0.72
PF13452	MaoC_dehydrat_N	0.72
PF04909	Amidohydro_2	0.72
PF07687	M20_dimer	0.72
PF00202	Aminotran_3	0.72
PF01968	Hydantoinase_A	0.72
PF09587	PGA_cap	0.72
PF02653	BPD_transp_2	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	42.03
COG3121	P pilus assembly protein, chaperone PapD	Extracellular structures [W]	1.45
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.72
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.72
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.72
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.04 %
Unclassified	root	N/A	36.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.04 %
Unclassified	root	N/A	36.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.04 %
Unclassified	root	N/A	36.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.96 %
Unclassified	root	N/A	36.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.54 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.45 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.80 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.62 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.45 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.72 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.72 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.72 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.96 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	3.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.62 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	1.45 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.72 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.72 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.72 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.72 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.62 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1.45 %
Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_71_18	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_71_18	0.72 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.72 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.72 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.72 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.62 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	1.45 %
Novosphingobium lindaniclasticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → Novosphingobium lindaniclasticum	0.72 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.72 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.72 %
Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_71_18	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_71_18	0.72 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.62 %
Pseudomonas sp. URHB0015	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. URHB0015	0.72 %
Pseudomonas sp. ok272	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. ok272	0.72 %
unclassified Rhodococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus	0.72 %
Methylobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp.	0.72 %
Novosphingobium lindaniclasticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → Novosphingobium lindaniclasticum	0.72 %
Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_71_18	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_71_18	0.72 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.62 %
Rhodococcus sp. Leaf7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. Leaf7	0.72 %
Pseudomonas sp. URHB0015	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. URHB0015	0.72 %
Pseudomonas sp. ok272	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. ok272	0.72 %
Methylobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp.	0.72 %
Novosphingobium lindaniclasticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → Novosphingobium lindaniclasticum	0.72 %
Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_71_18	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_71_18	0.72 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q02H3H6E	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
2228664022\|INPgaii200_c0925563	Not Available	633	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10059842	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300000955\|JGI1027J12803_101923085	Not Available	592	Open in IMG/M
3300003505\|JGIcombinedJ51221_10434007	Not Available	532	Open in IMG/M
3300004080\|Ga0062385_10597319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	697	Open in IMG/M
3300004082\|Ga0062384_100626750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. URHB0015	731	Open in IMG/M
3300004092\|Ga0062389_101394176	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300005093\|Ga0062594_102648763	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005168\|Ga0066809_10044995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	975	Open in IMG/M
3300005332\|Ga0066388_104692957	All Organisms → cellular organisms → Bacteria → Proteobacteria	695	Open in IMG/M
3300005363\|Ga0008090_15605397	All Organisms → cellular organisms → Bacteria → Proteobacteria	1630	Open in IMG/M
3300005366\|Ga0070659_101197448	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300005436\|Ga0070713_100407573	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300005436\|Ga0070713_102010756	Not Available	560	Open in IMG/M
3300005436\|Ga0070713_102065784	Not Available	552	Open in IMG/M
3300005534\|Ga0070735_10067432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2315	Open in IMG/M
3300005541\|Ga0070733_11097110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300005610\|Ga0070763_10101578	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300005610\|Ga0070763_10326757	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300005764\|Ga0066903_104717308	All Organisms → cellular organisms → Bacteria → Proteobacteria	725	Open in IMG/M
3300005764\|Ga0066903_107745058	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300005764\|Ga0066903_107821282	Not Available	549	Open in IMG/M
3300005764\|Ga0066903_109034074	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005844\|Ga0068862_101993410	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300005981\|Ga0081538_10285922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → Novosphingobium lindaniclasticum	611	Open in IMG/M
3300006046\|Ga0066652_100954079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. ok272	816	Open in IMG/M
3300006172\|Ga0075018_10192911	All Organisms → cellular organisms → Bacteria → Proteobacteria	962	Open in IMG/M
3300006173\|Ga0070716_100323130	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300006175\|Ga0070712_102015846	Not Available	505	Open in IMG/M
3300006176\|Ga0070765_101581512	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300006358\|Ga0068871_101262886	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300006914\|Ga0075436_100218556	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300009094\|Ga0111539_12936824	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300009523\|Ga0116221_1158441	Not Available	985	Open in IMG/M
3300009665\|Ga0116135_1264023	Not Available	672	Open in IMG/M
3300009683\|Ga0116224_10328935	Not Available	727	Open in IMG/M
3300009824\|Ga0116219_10056692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2314	Open in IMG/M
3300009839\|Ga0116223_10125463	All Organisms → cellular organisms → Bacteria	1608	Open in IMG/M
3300009839\|Ga0116223_10603662	Not Available	634	Open in IMG/M
3300010048\|Ga0126373_11055263	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300010343\|Ga0074044_10669286	Not Available	677	Open in IMG/M
3300010360\|Ga0126372_11857748	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300010362\|Ga0126377_11320100	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300010375\|Ga0105239_13163597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. Leaf7	536	Open in IMG/M
3300010376\|Ga0126381_105083864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300010379\|Ga0136449_102387583	Not Available	763	Open in IMG/M
3300010396\|Ga0134126_10274127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1989	Open in IMG/M
3300010399\|Ga0134127_10812625	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300011270\|Ga0137391_11490867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	521	Open in IMG/M
3300012179\|Ga0137334_1068506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300012180\|Ga0153974_1163885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300012683\|Ga0137398_10708948	Not Available	700	Open in IMG/M
3300012899\|Ga0157299_10243174	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300014199\|Ga0181535_10400649	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300014265\|Ga0075314_1048721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	828	Open in IMG/M
3300015374\|Ga0132255_100141764	All Organisms → cellular organisms → Bacteria → Proteobacteria	3338	Open in IMG/M
3300015374\|Ga0132255_102970118	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300016319\|Ga0182033_12208041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300016404\|Ga0182037_10679009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	880	Open in IMG/M
3300016445\|Ga0182038_10112861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2002	Open in IMG/M
3300017955\|Ga0187817_11118148	Not Available	506	Open in IMG/M
3300017970\|Ga0187783_10042229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3379	Open in IMG/M
3300017970\|Ga0187783_11217583	Not Available	542	Open in IMG/M
3300017972\|Ga0187781_11159111	Not Available	568	Open in IMG/M
3300017973\|Ga0187780_10764935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300017974\|Ga0187777_10834154	Not Available	660	Open in IMG/M
3300017988\|Ga0181520_10466319	Not Available	901	Open in IMG/M
3300018037\|Ga0187883_10501568	Not Available	626	Open in IMG/M
3300018038\|Ga0187855_10742079	Not Available	572	Open in IMG/M
3300018060\|Ga0187765_10366257	Not Available	881	Open in IMG/M
3300018062\|Ga0187784_10953979	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300018062\|Ga0187784_10955720	All Organisms → cellular organisms → Bacteria → Proteobacteria	681	Open in IMG/M
3300018085\|Ga0187772_10189387	All Organisms → cellular organisms → Bacteria → Proteobacteria	1378	Open in IMG/M
3300018086\|Ga0187769_10160949	All Organisms → cellular organisms → Bacteria	1648	Open in IMG/M
3300018481\|Ga0190271_10603621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1217	Open in IMG/M
3300020579\|Ga0210407_10545773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	905	Open in IMG/M
3300020583\|Ga0210401_10577417	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300021088\|Ga0210404_10792719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	541	Open in IMG/M
3300021181\|Ga0210388_11562946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300021402\|Ga0210385_11276812	Not Available	563	Open in IMG/M
3300021420\|Ga0210394_10486132	Not Available	1086	Open in IMG/M
3300021433\|Ga0210391_10353226	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300021560\|Ga0126371_11215652	Not Available	890	Open in IMG/M
3300021560\|Ga0126371_12049855	Not Available	689	Open in IMG/M
3300021560\|Ga0126371_12169448	Not Available	670	Open in IMG/M
3300025453\|Ga0208455_1072567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300025899\|Ga0207642_10708866	Not Available	635	Open in IMG/M
3300025906\|Ga0207699_11265103	Not Available	546	Open in IMG/M
3300026023\|Ga0207677_10493104	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300026111\|Ga0208291_1054898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	713	Open in IMG/M
3300026118\|Ga0207675_101558901	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300027505\|Ga0209218_1032915	Not Available	1013	Open in IMG/M
3300027590\|Ga0209116_1083569	All Organisms → cellular organisms → Bacteria → Proteobacteria	699	Open in IMG/M
3300027591\|Ga0209733_1079886	Not Available	841	Open in IMG/M
3300027648\|Ga0209420_1020739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2130	Open in IMG/M
3300027695\|Ga0209966_1025521	Not Available	1173	Open in IMG/M
3300027835\|Ga0209515_10301885	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300027855\|Ga0209693_10383304	Not Available	680	Open in IMG/M
3300028047\|Ga0209526_10931048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300028666\|Ga0265336_10207421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	582	Open in IMG/M
3300028791\|Ga0307290_10359688	Not Available	533	Open in IMG/M
3300028806\|Ga0302221_10254092	Not Available	767	Open in IMG/M
3300028812\|Ga0247825_11347607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300028906\|Ga0308309_10186036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1701	Open in IMG/M
3300028906\|Ga0308309_10242429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1505	Open in IMG/M
3300030007\|Ga0311338_10420527	All Organisms → cellular organisms → Bacteria	1427	Open in IMG/M
3300030494\|Ga0310037_10364865	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300030503\|Ga0311370_11645313	Not Available	662	Open in IMG/M
3300030503\|Ga0311370_11804431	Not Available	621	Open in IMG/M
3300030706\|Ga0310039_10145826	Not Available	960	Open in IMG/M
3300030862\|Ga0265753_1106132	Not Available	574	Open in IMG/M
3300030940\|Ga0265740_1046677	Not Available	524	Open in IMG/M
3300031057\|Ga0170834_105508810	Not Available	781	Open in IMG/M
3300031233\|Ga0302307_10075288	Not Available	1776	Open in IMG/M
3300031543\|Ga0318516_10504379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300031563\|Ga0307436_1220546	Not Available	517	Open in IMG/M
3300031708\|Ga0310686_100279198	All Organisms → cellular organisms → Bacteria → Proteobacteria	1449	Open in IMG/M
3300031708\|Ga0310686_106463528	Not Available	617	Open in IMG/M
3300031740\|Ga0307468_100561271	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300031782\|Ga0318552_10534912	Not Available	598	Open in IMG/M
3300031831\|Ga0318564_10192990	Not Available	907	Open in IMG/M
3300031912\|Ga0306921_11748139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	671	Open in IMG/M
3300031945\|Ga0310913_11249763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300031946\|Ga0310910_10736349	Not Available	778	Open in IMG/M
3300031947\|Ga0310909_10674443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300032179\|Ga0310889_10746564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	513	Open in IMG/M
3300032783\|Ga0335079_11914588	Not Available	574	Open in IMG/M
3300032805\|Ga0335078_10224600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2585	Open in IMG/M
3300032805\|Ga0335078_12010247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp.	618	Open in IMG/M
3300032828\|Ga0335080_10533608	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_71_18	1242	Open in IMG/M
3300032828\|Ga0335080_11234661	Not Available	750	Open in IMG/M
3300032893\|Ga0335069_11643811	Not Available	687	Open in IMG/M
3300032895\|Ga0335074_11239409	Not Available	624	Open in IMG/M
3300032898\|Ga0335072_10166194	All Organisms → cellular organisms → Bacteria	2678	Open in IMG/M
3300033134\|Ga0335073_10815875	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300033402\|Ga0326728_11073199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300034163\|Ga0370515_0286178	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.13%
Host-Associated	Host-Associated	10.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.99%
Aquatic	Environmental → Aquatic	10.14%
Plants	Host-Associated → Plants	10.14%
Fungi	Host-Associated → Fungi	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.64%
Freshwater	Environmental → Aquatic → Freshwater	7.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.07%
Peat	Environmental → Terrestrial → Peat	4.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.62%
Sediment	Environmental → Aquatic → Sediment	1.45%
Roots	Host-Associated → Plants → Roots	1.45%
Marine	Environmental → Aquatic → Marine	0.72%
Mycelium	Host-Associated → Fungi → Mycelium	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.30%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	16.67%
Loam	Environmental → Terrestrial → Soil → Loam	16.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.25%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.35%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.45%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.45%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.72%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.72%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.01%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.49%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.32%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.07%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.17%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.45%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.72%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.72%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.72%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.72%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.25%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.52%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.07%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.07%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.62%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.45%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.45%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.45%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.72%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.72%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.72%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.72%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.72%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.72%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.72%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.72%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.72%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012179	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014265	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026111	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028666	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG	Host-Associated	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031563	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_11387710	2170459005	Grass Soil	MSIAELRPAASPGSVPTAEELVGRARKLAPKLRERALKAERDRQ
INPgaii200_09255631	2228664022	Soil	MSLAELRPAAAPDNIPTADELIIRARELAPRLRER
AF_2010_repII_A1DRAFT_100598421	3300000597	Forest Soil	MSLAELRPAAAPDNIPTADELIIRARALAPRLRERAVKA
JGI1027J12803_1019230852	3300000955	Soil	MSLAELRPAAAPDNIPTADELIIRARELAPRLRERAVTAERDRNIPQQSVDEYL
JGIcombinedJ51221_104340071	3300003505	Forest Soil	MSVSELRTAAAPKKIPTAAELVGLARTLAPKLRERALKAERDRNVPRESVEEYIEAGLIHTL
Ga0062385_105973191	3300004080	Bog Forest Soil	MSLAEVRPAAKTDNVPTADELIGRARKLAPKLRERALKAERDRYIPRESVEE
Ga0062384_1006267501	3300004082	Bog Forest Soil	MSVAELRSPAAIDKIPTAEELTGRARALAPKLRERAIQAERDRNLPRES
Ga0062389_1013941762	3300004092	Bog Forest Soil	MSVSELRTATAPKTIPTAAELIGRARTLAPKLRERALMAERDRN
Ga0062594_1026487631	3300005093	Soil	MSLAEARPAMPQQVPSAAELVARARALAPKLRERAVKAERDRNIPQESVDEYIAA
Ga0066809_100449951	3300005168	Soil	MSVSELRTAAAPKKIPTAAELVGLARTLAPKLRERALKAE
Ga0066388_1046929571	3300005332	Tropical Forest Soil	MSLAELRPAAVTDNIPTADELIIRARALMPRLRERAVKAERDRNIPQQSVDEYLASGLIH
Ga0008090_156053972	3300005363	Tropical Rainforest Soil	MSLAELRPAAAPGDVPTAEDLIGRARKLAPKLRERALKAERDRQIPLESVAEYIDAG
Ga0070659_1011974482	3300005366	Corn Rhizosphere	MSVSELRTAAAPKTVPTAAELVSRARALAPKLRERALKAERARNVPRESVEEYI
Ga0070713_1004075731	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSVSELRTAAAPKTVPTAAELVSRARALAPKLRERALKAER
Ga0070713_1020107562	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSLAELRPAAAPDNIPTADELIIRARELAPRLRERAVTAERDRNIPQQSV
Ga0070713_1020657842	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSLAELRPAAPPDNIPTADELIIRARELAPRLRERAVTAERDRNIPQQSV
Ga0070735_100674323	3300005534	Surface Soil	MSIAELQPAAASKSIPSADELIGRARALAPKLRERAVRAERD
Ga0070733_110971102	3300005541	Surface Soil	MSIAELQPAAASKSIPSADELVERARKLAPKLRERAVRA
Ga0070763_101015781	3300005610	Soil	MSIAELRPAAAPGSVPTAEELVGRARKLAPKLRERALKAERDRNVPRE
Ga0070763_103267572	3300005610	Soil	MSVAELRPAVAPGAIPTAEELVARARALAPKLRERAVRAERDRN
Ga0066903_1047173082	3300005764	Tropical Forest Soil	MSLAELRPTAPDNIPTADELIIRARALAPRLRERAVKAERDRNIPQQS
Ga0066903_1077450582	3300005764	Tropical Forest Soil	MSLAELRPAAAPGGVPTAEDLIGRARKLAPKLRERALKAERDRQIPLESVAE
Ga0066903_1078212821	3300005764	Tropical Forest Soil	VSLAELRPAVGPDNIPTADELIIRARALAPRLRERAVKAERDRNIPQQSV
Ga0066903_1090340742	3300005764	Tropical Forest Soil	MSVAETRAEAPPKKAIPSADELVARARALAPKLRERAVQAERDRN
Ga0068862_1019934101	3300005844	Switchgrass Rhizosphere	MSLAEARPAMPQQVPSAAELVARARALAPKLRERAVKAERDRNIPQESVDEYIA
Ga0081538_102859221	3300005981	Tabebuia Heterophylla Rhizosphere	MSVAEAMPAKSPSRAATIPSADELIGRAKALAPKLRERAVRAERERNI
Ga0066652_1009540791	3300006046	Soil	MSLAEFRPAAESGNIPTADELIARARALAPKLRERAVKAERDRNI
Ga0075018_101929113	3300006172	Watersheds	MSVTEMRPAAAPDKIPTADELVGRARALAPKLRERAVK
Ga0070716_1003231303	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSLAELRPAAPPDNIPTADELIIRARELAPRLRERAV
Ga0070712_1020158462	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSLAELKPAAAPHNIPTADELIIRARALAPRLRERAVKAERDRNIPQQSVDE
Ga0070765_1015815122	3300006176	Soil	MSVAELRPAAAPGTIPTAEELIARARALAPKLRERAVRAERDRNIP
Ga0068871_1012628862	3300006358	Miscanthus Rhizosphere	MSLAELRPAVAPGGVPTAEDLIGRARKLAPKLRERALKAERDRQIPLE
Ga0075436_1002185561	3300006914	Populus Rhizosphere	MSVSELRTAAAPKTVPTAAELVSRARALAPKLRERALKAERARNVPRESVEEYID
Ga0111539_129368242	3300009094	Populus Rhizosphere	MSLAEAKPPAAAGKIPTADELIARARALAPKLRERAIKAERD
Ga0116221_11584412	3300009523	Peatlands Soil	MWRQREEFHMSLAELRPAAAPGSVPTAEDLVGRARKLAPNLPERALKAKRNRQIPREPVRDK
Ga0116135_12640231	3300009665	Peatland	MSLAELRPGVAGTPTAAELVARAKNLAPKLRERAEKAERDRTIPQVSVDEFIDAGLIH
Ga0116224_103289352	3300009683	Peatlands Soil	MSLAEVRPAAKPGNIPSAAELVGRARKLAPKLRERALKAELDRNIPR
Ga0116219_100566923	3300009824	Peatlands Soil	MWRQREEFHMSLAELRPAAAPGSVPTAEDLVGRARKLAPKLRERALKAER
Ga0116223_101254631	3300009839	Peatlands Soil	MSLAELRPSTAPGNVPTAAELVGRAQKLAPKLRERAIKAERD
Ga0116223_106036621	3300009839	Peatlands Soil	MSVAELRTGAAPAKIPTADELIGRARALAPKLRERAIKAERD
Ga0126373_110552632	3300010048	Tropical Forest Soil	MSLAELRPAAVTDNTPTADELIIRARALTPRLRERAVKAER
Ga0074044_106692862	3300010343	Bog Forest Soil	MSVAELRPAAAPGAIPTADELIARARALAPKLRERAVRAER
Ga0126372_118577482	3300010360	Tropical Forest Soil	MSLAELRPAAAPDNIPTADELIIRARTLAPRLRERAVKAERDRNIPQQSVDEYLASGLIHTL
Ga0126377_113201002	3300010362	Tropical Forest Soil	MSLAELRPAAAPGSVPTAEELVGRARKLAPKLRERALKAERDR
Ga0105239_131635971	3300010375	Corn Rhizosphere	MSLAELKPAAAPHNIPTADELIIRARALAPRLRERAVKAERDRNIPQQSVDEYLAS
Ga0126381_1050838641	3300010376	Tropical Forest Soil	MSLAELRPAAAPDNIPTGDELIIRARALAPRLRERAVKAERD
Ga0136449_1023875833	3300010379	Peatlands Soil	MSLAEVRPAAKLGNIPSAAELVGRARKLAPKLRERALKAELDRNIPRESVEE
Ga0134126_102741273	3300010396	Terrestrial Soil	MSVSELRTAAAPKTVPTAAELVSRASALAPKLRERALKAERARNVPRESVEEY
Ga0134127_108126252	3300010399	Terrestrial Soil	MSLAEARPPAPQHLPSADELVARARALAPRLRERAV
Ga0137391_114908672	3300011270	Vadose Zone Soil	MSLAEVRPAAKPDNVPTADELIGRARKLAPKLRERALKAERDR
Ga0137334_10685061	3300012179	Soil	MGGYIMSVAEKPSAAKGAIPAAAELVSRARALAPKLKERAVKAE
Ga0153974_11638852	3300012180	Attine Ant Fungus Gardens	MSLAELRPAAAPGSVPAAEELIGRARKLAPKLRERALKAERDRQIPLESVGEY
Ga0137398_107089482	3300012683	Vadose Zone Soil	MSVTDLRPGAEPGNIPTADELVARARALAPKLRERAVRAERDRNIPQE
Ga0157299_102431741	3300012899	Soil	MSLAEARPAAPQQVPSAAELVARARALAPKLRERAVKAERDRNI
Ga0181535_104006492	3300014199	Bog	MSLAEVRPTAVENIPSADELVARARKLAPKLRERALKAEHDRHIPRESV
Ga0075314_10487212	3300014265	Natural And Restored Wetlands	MSVVETRTPAATKGKIPSANELVARAKALAPKLRERAVQAERDRNLPKESVQEYID
Ga0132255_1001417644	3300015374	Arabidopsis Rhizosphere	MSVSELRTAAAPKTVPTAAELVSRARALAPKLRERALKAERARNVP
Ga0132255_1029701181	3300015374	Arabidopsis Rhizosphere	MSLAEARPAAPQQVPSAAELIARARALAPKLRERAVKAERDRN
Ga0182033_122080411	3300016319	Soil	MSLAELRPAAAPDNIPTADELIIRARALAPRLRERAV
Ga0182037_106790092	3300016404	Soil	VSLAELRPAVAPDNIPTADELIIRARALAPRLRERAVKAERDRSIPQQSV
Ga0182038_101128611	3300016445	Soil	MSLAELRAAPEAGNIPTADELVSRARALAPRLRERALQA
Ga0187817_111181481	3300017955	Freshwater Sediment	LSIAELRPASAPGNIPNTDELVARARALAPKLRDRAVRAERDRNIPQES
Ga0187783_100422294	3300017970	Tropical Peatland	MSVAELRPAAAPGVAPTAEELVGRARKLAPKLRERALKAERDR
Ga0187783_112175832	3300017970	Tropical Peatland	MSLAELRPAAAAAAPNAIPSAEDLIARARTLAPKLRERAVRAER
Ga0187781_111591111	3300017972	Tropical Peatland	MSVAEMRPAAAPDQIPTAAELVARARALAPKLRERA
Ga0187780_107649353	3300017973	Tropical Peatland	MSVAEMRPAVAPDKIPTAAELVAKARALAPKLRERAVKAERDRDVPKESVDEYL
Ga0187777_108341541	3300017974	Tropical Peatland	MSVAEMRPAVAPDKIPTAAELVAKARALAPKLRERAVKAERDRDVPKESV
Ga0181520_104663191	3300017988	Bog	MSVAELRPAAAPDKIPSADELVGRARALAPKLRERALKAERDRNIPRD
Ga0187883_105015681	3300018037	Peatland	VSIAELRPASAPENIPSAEELVARARALAPKLRERAVRAERDRNIPQESV
Ga0187855_107420792	3300018038	Peatland	MSLAELRPSTAPGNVPTAAELVGRAQKLAPKLRERAIKAER
Ga0187765_103662572	3300018060	Tropical Peatland	MSVAELRPASAPATIPSAEELIARAHALAPKLRERAVRAERDRHIP
Ga0187784_109539791	3300018062	Tropical Peatland	MSVAEMRPTAASELSEGIPSAEALVARARALAPKLRER
Ga0187784_109557202	3300018062	Tropical Peatland	MGENAMSVAEMRPAAAPASSEGIPSAETLVARARALAPKL
Ga0187772_101893872	3300018085	Tropical Peatland	MGENAMSVAEMRPAAAPASSEGIPSAETLVARARALAPKLRERAVRAERDRNIPQ
Ga0187769_101609492	3300018086	Tropical Peatland	MSLAELRPAVAPDNIPSAEELVGRARALAPKLRERAEK
Ga0190271_106036211	3300018481	Soil	MSLAEAKPPATAGEIPTADELIARARALAPRLRERAIKAER
Ga0210407_105457731	3300020579	Soil	MSVTEMRPAAAPDKIPTADELVGRARALAPKLRERAVKAERDRNL
Ga0210401_105774172	3300020583	Soil	MSVSELRTTAAPEKIPTAAELVGRARTLAPKLRERALKAERDRNVPRESVEEYIEAGLIHTL
Ga0210404_107927192	3300021088	Soil	MSVAELRPAAAPGTIPTAEELIARARALAPKLRERAVRAERDRNIPQASVDEFID
Ga0210388_115629461	3300021181	Soil	MSVAELRPAAAPGAIPTAEDLVARARALAPKLRERAVRAERDRNIPQASVDE
Ga0210385_112768121	3300021402	Soil	MNIAELRPAAAPGSVPTAEELVGRARKLAPKLRERALKAERDRQIPLESVEEYIDA
Ga0210394_104861322	3300021420	Soil	MSVAELRPAVAPGAIPTAEELVARARALAPKLRERAVWAERDRNIPQE
Ga0210391_103532262	3300021433	Soil	MSVAELRTAAAADKIPTADELIARARALAPKLRER
Ga0126371_112156522	3300021560	Tropical Forest Soil	MSLAEVRPSAAKPDNIPTAEDLIGRARKLAPKLRERALKAER
Ga0126371_120498551	3300021560	Tropical Forest Soil	VSLAELRPAAAPDSIPTADELIIRARALAPRLRERAVKAERDRNIPQQSVDEYL
Ga0126371_121694481	3300021560	Tropical Forest Soil	MSVAELRPASTPAAIPSAEELVARARALAPKLRERAVRAERDRHIPQESVDE
Ga0208455_10725672	3300025453	Peatland	MSLAELRPSTAPGNVPTAAELVGRAQKLAPKLRERAIKAERDRNIPR
Ga0207642_107088661	3300025899	Miscanthus Rhizosphere	MSVTDLRPSAEPGNIPTADELVARARALAPKLRERAVRTERDRNIPQESVDE
Ga0207699_112651031	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSVSELRTAAAPKTVPTAAELVSRARALAPKLRERTLKAERARNVP
Ga0207677_104931042	3300026023	Miscanthus Rhizosphere	MSVTDLRPGAEPGNIPTADELVARARALAPKLRERAVRAERD
Ga0208291_10548981	3300026111	Natural And Restored Wetlands	MSVVETRTPAATKGKIPSANELVARAKALAPKLRERAVQAERDRNLPKE
Ga0207675_1015589011	3300026118	Switchgrass Rhizosphere	MSLAEAKPPAAAGKIPTADELIARARALAPKLRERAIKA
Ga0209218_10329151	3300027505	Forest Soil	MSVAELRAAAPGIVPTAEELVGRARQLAPKLRERALKAERDRQIPLVSVEEFIDAG
Ga0209116_10835691	3300027590	Forest Soil	MSVAELRSAQAPQQDGPSADELIGRAKKLAPKLRERAVKAERDREIPQQSVDEYIESGL
Ga0209733_10798862	3300027591	Forest Soil	MSVAELRPAAAPGAIPTAEELVARARALAPKLRERAVRAERDRNIPQ
Ga0209420_10207392	3300027648	Forest Soil	MSVAEMRSAAASKSSEGIPSAETLVARARALAPKLRERA
Ga0209966_10255211	3300027695	Arabidopsis Thaliana Rhizosphere	MSVAETMPAGTAKIPGADELIGRARALAPKLRERAVRAE
Ga0209515_103018853	3300027835	Groundwater	MSAAENRTVGAAIPSAADLVARARALAPKLRERAERAER
Ga0209693_103833042	3300027855	Soil	MSVAELRPAVAPGAIPTAEELVARARALAPKLRERAVRAERDRNIP
Ga0209526_109310481	3300028047	Forest Soil	MSVAELRPAAAPGAIPTAEELVARARALAPKLRERAVRAERDRNIPQASV
Ga0265336_102074211	3300028666	Rhizosphere	MSIAELQPAAASKSIPSADELIGRARALAPKLRERA
Ga0307290_103596881	3300028791	Soil	MSVTDLRPGAEPGNIPTADELVARARALAPKLRERAVRAERDRNIPQESV
Ga0302221_102540922	3300028806	Palsa	MSVAELRSAQVPQRDVPSADELIGRAKKLAPKLRERAVKAERDREIPQQSVDEYIDSGLI
Ga0247825_113476072	3300028812	Soil	MSVAPSRPSAPGIPGADELVSRARALAPKLRERAIK
Ga0308309_101860361	3300028906	Soil	MSVSELRTAAAPKKIPTAAELVGLARTLAPKLRERALKAERD
Ga0308309_102424291	3300028906	Soil	MSIAELRPAAAPGSVPTAEELVGRARKLAPKLRERALKAERDRQIPLESVE
Ga0311338_104205271	3300030007	Palsa	MSVAELRSAQVPQRDVPSADELIGRAKKLAPKLRERAVKAERDREIPQQSVDE
Ga0310037_103648651	3300030494	Peatlands Soil	MSIAELRPAAAPGSVPTAEELVGRARKLAPKLRERALKAERDRQIPLESVEEYIDAGLIH
Ga0311370_116453131	3300030503	Palsa	MSLAELRPAAAPGTIPTADDLVGRARKLAPKLRERAL
Ga0311370_118044311	3300030503	Palsa	MSLAEIRPAAAPDNAPTAAELVGRAQKLAPKLRERAIKAERDRNIPRESVEE
Ga0310039_101458262	3300030706	Peatlands Soil	MSLAELRPAAAPGSVPTAEDLVGRARKLAPKLRERALKAER
Ga0265753_11061322	3300030862	Soil	MSVAELRPAAAPGAIPTAEELVARARALAPKLRERAVRAERD
Ga0265740_10466771	3300030940	Soil	MSVAELRPAAAPGAIPAAEELVVRARALAAKLRER
Ga0170834_1055088101	3300031057	Forest Soil	MSVAELGPAAAPGAIPTAEELVARARALAPKLRERAVQAERDRDIPQAS
Ga0302307_100752881	3300031233	Palsa	MAVAEPRLAVSDIPNGGELVARAKTLAPKLRERAVKAERNRNIPQESVDEYIA
Ga0318516_105043791	3300031543	Soil	MSLAELRPAAAPDNIPTADELIIRARALAPRLRERAVKAERDRNIPQQS
Ga0307436_12205461	3300031563	Salt Marsh	MSLAEVRPAGARDKVPSAQELIDRARALAPKLRERQLRQ
Ga0310686_1002791982	3300031708	Soil	VSIAELRPASAPENIPSAEELVARARALAPKLRERAVRAERDRNIPQGSVDEFIE
Ga0310686_1064635282	3300031708	Soil	MSVAELRSAQAPQQGVPSADELIGRAKKLAPKLRERAVKAERDREIPQQSVDE
Ga0307468_1005612711	3300031740	Hardwood Forest Soil	MSLAELRPAVPPDNIPTADELIIRARELAPRLRERAVTAERDRNIPQQSVDE
Ga0318552_105349121	3300031782	Soil	VSLAELRPAVAPDNIPTADELIIRARALAPRLRERAVKAERDRNIPQQSVD
Ga0318564_101929902	3300031831	Soil	MSVAELRPASTPAAIPSAEELVARARALAPKLRERAVRAERDRHFPQESV
Ga0306921_117481391	3300031912	Soil	MSLAELRAAPEAGNIPTADELVSRARALAPRLRERALQAERDRN
Ga0310913_112497631	3300031945	Soil	MSLAELRAAPEAGNIPTADELVSRARALAPRLRERAL
Ga0310910_107363491	3300031946	Soil	MSLAELRPAAVTDNIPTADELIIRARALMPRLRERAVKAERD
Ga0310909_106744431	3300031947	Soil	MSLAELRPAAAPDNIPTADELIIRARALAPRLRERAVKAERDRNIPQQ
Ga0310889_107465642	3300032179	Soil	MSVAETMPAKAAKIPSADELIGRARALAPKLRERAVRAERERNIPRETVEEYLA
Ga0335079_119145881	3300032783	Soil	MSVAEMRAAATPESNKGTPSAEALVARARALAPKLRERAVRAERDRNIPQES
Ga0335078_102246001	3300032805	Soil	MNAPVQAPTTVPGADELIARARALAPRLRERAIAAERE
Ga0335078_120102471	3300032805	Soil	MSLAELRPAATAPEKIPTADELVGRAKALAPKLRERAVRAERDR
Ga0335080_105336082	3300032828	Soil	MSLAELRPAAGVDDIPSAEELVARARSLAPKLRERAVRAERDRAIPQQSVD
Ga0335080_112346612	3300032828	Soil	MSVAAKAETRPSAAVPSADALLARVRALAPKLRERAVRA
Ga0335069_116438112	3300032893	Soil	MSLAELRPTAASDIPSAEELVARAKALAPKLRERA
Ga0335074_112394092	3300032895	Soil	MSLAELRPAAAPGVVPTAEELIGRARKLAPKLRERAL
Ga0335072_101661941	3300032898	Soil	LSIAELRPATASDTPTAGELVARARALAPRLRERALRAERDRN
Ga0335073_108158752	3300033134	Soil	MSVAELRPAAAAETIPTGAELVARARALAPQLRERAVRAERDRHIPQQSVEE
Ga0326728_110731992	3300033402	Peat Soil	MSLAEVRPTPAENIPSADELVTRARKLAPKLRERALKAEHDRHIPRESVDEYL
Ga0370515_0286178_2_151	3300034163	Untreated Peat Soil	MSVAELRSAQAPQQDVPSADELIGRAKKLAPKLRERAVKAERDREVPQQS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F056030

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences