Metagenome / Metatranscriptome Family F055639

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055639
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	66 residues
Representative Sequence	MEWPAPLTVREVAAELGSSEDDVRALIREGELQTVACGIRPGLVPRHILDAYLRRLEHRLRSSTT
Number of Associated Samples	106
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	40.00 %
% of genes near scaffold ends (potentially truncated)	24.64 %
% of genes from short scaffolds (< 2000 bps)	80.43 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.855 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere (10.870 % of family members)
Environment Ontology (ENVO)	Unclassified (34.783 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.275 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.71% β-sheet: 4.30% Coil/Unstructured: 56.99%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF00230	MIP	4.35
PF03575	Peptidase_S51	4.35
PF12728	HTH_17	3.62
PF03706	LPG_synthase_TM	2.90
PF12840	HTH_20	2.90
PF16870	OxoGdeHyase_C	2.17
PF01638	HxlR	2.17
PF07883	Cupin_2	2.17
PF03795	YCII	1.45
PF00581	Rhodanese	1.45
PF00903	Glyoxalase	1.45
PF04828	GFA	1.45
PF12697	Abhydrolase_6	1.45
PF09948	DUF2182	1.45
PF13470	PIN_3	0.72
PF13527	Acetyltransf_9	0.72
PF00196	GerE	0.72
PF06224	HTH_42	0.72
PF11746	DUF3303	0.72
PF00571	CBS	0.72
PF01035	DNA_binding_1	0.72
PF01042	Ribonuc_L-PSP	0.72
PF07681	DoxX	0.72
PF01243	Putative_PNPOx	0.72
PF01522	Polysacc_deac_1	0.72
PF14079	DUF4260	0.72
PF00027	cNMP_binding	0.72
PF07992	Pyr_redox_2	0.72
PF01402	RHH_1	0.72
PF02870	Methyltransf_1N	0.72
PF07978	NIPSNAP	0.72
PF03473	MOSC	0.72
PF01842	ACT	0.72
PF08327	AHSA1	0.72
PF05147	LANC_like	0.72
PF13659	Obsolete Pfam Family	0.72
PF12146	Hydrolase_4	0.72
PF02195	ParBc	0.72
PF00115	COX1	0.72
PF00528	BPD_transp_1	0.72
PF00464	SHMT	0.72
PF02594	DUF167	0.72
PF14269	Arylsulfotran_2	0.72
PF09723	Zn-ribbon_8	0.72
PF00082	Peptidase_S8	0.72
PF12681	Glyoxalase_2	0.72
PF07719	TPR_2	0.72
PF01872	RibD_C	0.72
PF13374	TPR_10	0.72
PF00291	PALP	0.72
PF13669	Glyoxalase_4	0.72
PF00171	Aldedh	0.72
PF01728	FtsJ	0.72
PF03465	eRF1_3	0.72
PF01906	YbjQ_1	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	4.35
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	2.90
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.17
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	1.45
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.45
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.45
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.72
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	0.72
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.72
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.72
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.72
COG0293	23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ	Translation, ribosomal structure and biogenesis [J]	0.72
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.72
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.72
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.72
COG1189	Predicted rRNA methylase YqxC, contains S4 and FtsJ domains	Translation, ribosomal structure and biogenesis [J]	0.72
COG1872	Uncharacterized conserved protein YggU, UPF0235/DUF167 family	Function unknown [S]	0.72
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.72
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.72
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.72
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	0.72
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.72
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.72
COG4403	Lantibiotic modifying enzyme	Defense mechanisms [V]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.86 %
Unclassified	root	N/A	10.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.86 %
Unclassified	root	N/A	10.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.86 %
Unclassified	root	N/A	10.14 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.67 %
Unclassified	root	N/A	10.14 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	64.49 %
Unclassified	root	N/A	10.14 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	43.48 %
Unclassified	root	N/A	10.14 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.45 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	26.09 %
Unclassified	root	N/A	10.14 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.17 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.45 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	0.72 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.72 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.72 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	26.09 %
Unclassified	root	N/A	10.14 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.45 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.72 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.72 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.72 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.72 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	26.09 %
Unclassified	root	N/A	10.14 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.45 %
Microbacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	0.72 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.72 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.72 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459012\|GOYVCMS01CR1L2	All Organisms → cellular organisms → Bacteria → Terrabacteria group	509	Open in IMG/M
2189573002\|GZIGXIF02IL22A	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300002568\|C688J35102_120974121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4003	Open in IMG/M
3300003319\|soilL2_10166705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3725	Open in IMG/M
3300003321\|soilH1_10022470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2529	Open in IMG/M
3300003321\|soilH1_10295349	All Organisms → cellular organisms → Bacteria	1476	Open in IMG/M
3300003323\|rootH1_10174148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1097	Open in IMG/M
3300003323\|rootH1_10211399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1032	Open in IMG/M
3300003324\|soilH2_10041434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1346	Open in IMG/M
3300003324\|soilH2_10057475	All Organisms → cellular organisms → Bacteria	5964	Open in IMG/M
3300004114\|Ga0062593_100151387	All Organisms → cellular organisms → Bacteria	1760	Open in IMG/M
3300004156\|Ga0062589_100757983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	872	Open in IMG/M
3300004479\|Ga0062595_101135768	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300005093\|Ga0062594_100828501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	861	Open in IMG/M
3300005093\|Ga0062594_101986696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	621	Open in IMG/M
3300005260\|Ga0074072_1013127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3482	Open in IMG/M
3300005327\|Ga0070658_10174795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1805	Open in IMG/M
3300005329\|Ga0070683_100003014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13523	Open in IMG/M
3300005329\|Ga0070683_100013430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7143	Open in IMG/M
3300005329\|Ga0070683_101306700	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300005336\|Ga0070680_100051409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3362	Open in IMG/M
3300005336\|Ga0070680_100184985	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300005354\|Ga0070675_101637438	Not Available	594	Open in IMG/M
3300005355\|Ga0070671_101120520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	691	Open in IMG/M
3300005364\|Ga0070673_101614075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	613	Open in IMG/M
3300005435\|Ga0070714_100399210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1299	Open in IMG/M
3300005435\|Ga0070714_100532502	Not Available	1123	Open in IMG/M
3300005435\|Ga0070714_101920370	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300005436\|Ga0070713_100340110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1390	Open in IMG/M
3300005458\|Ga0070681_10096036	All Organisms → cellular organisms → Bacteria	2912	Open in IMG/M
3300005458\|Ga0070681_11293131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	652	Open in IMG/M
3300005529\|Ga0070741_10425639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1215	Open in IMG/M
3300005530\|Ga0070679_100113248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2698	Open in IMG/M
3300005530\|Ga0070679_100619256	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300005535\|Ga0070684_100443303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1199	Open in IMG/M
3300005538\|Ga0070731_10296791	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300005539\|Ga0068853_101421435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	671	Open in IMG/M
3300005545\|Ga0070695_101535221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300005546\|Ga0070696_101064388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	678	Open in IMG/M
3300005563\|Ga0068855_100795308	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300005564\|Ga0070664_102284479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	513	Open in IMG/M
3300005577\|Ga0068857_102068081	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300005614\|Ga0068856_101199969	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005614\|Ga0068856_102451807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	529	Open in IMG/M
3300005616\|Ga0068852_102833505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300005891\|Ga0075283_1017839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1100	Open in IMG/M
3300006028\|Ga0070717_10011872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6628	Open in IMG/M
3300006755\|Ga0079222_10121409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1424	Open in IMG/M
3300006806\|Ga0079220_10207835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1136	Open in IMG/M
3300009093\|Ga0105240_10282567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1906	Open in IMG/M
3300009098\|Ga0105245_10426776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1330	Open in IMG/M
3300009098\|Ga0105245_11855562	Not Available	656	Open in IMG/M
3300009098\|Ga0105245_12054215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300010152\|Ga0126318_11095013	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300010359\|Ga0126376_10883702	All Organisms → cellular organisms → Bacteria → Terrabacteria group	882	Open in IMG/M
3300010366\|Ga0126379_10142863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2216	Open in IMG/M
3300010373\|Ga0134128_10058681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4436	Open in IMG/M
3300010373\|Ga0134128_11865976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	661	Open in IMG/M
3300010375\|Ga0105239_12696667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580	Open in IMG/M
3300010397\|Ga0134124_10775741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	956	Open in IMG/M
3300011003\|Ga0138514_100063062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	767	Open in IMG/M
3300012208\|Ga0137376_11399564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	590	Open in IMG/M
3300012209\|Ga0137379_10538933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1075	Open in IMG/M
3300012211\|Ga0137377_11010515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	762	Open in IMG/M
3300012469\|Ga0150984_101746296	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300012923\|Ga0137359_10224390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1677	Open in IMG/M
3300012951\|Ga0164300_10430707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	734	Open in IMG/M
3300012951\|Ga0164300_11176651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
3300012955\|Ga0164298_10042231	Not Available	2136	Open in IMG/M
3300012957\|Ga0164303_10278967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	973	Open in IMG/M
3300012960\|Ga0164301_10268791	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300012985\|Ga0164308_10056167	All Organisms → cellular organisms → Bacteria	2573	Open in IMG/M
3300012985\|Ga0164308_10255923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1368	Open in IMG/M
3300012985\|Ga0164308_11644843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	594	Open in IMG/M
3300012988\|Ga0164306_11051574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	674	Open in IMG/M
3300013296\|Ga0157374_11177312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	788	Open in IMG/M
3300013296\|Ga0157374_11349927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	735	Open in IMG/M
3300013296\|Ga0157374_11762030	Not Available	644	Open in IMG/M
3300013297\|Ga0157378_11894362	Not Available	645	Open in IMG/M
3300013307\|Ga0157372_10195913	All Organisms → cellular organisms → Bacteria	2340	Open in IMG/M
3300013770\|Ga0120123_1055163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	859	Open in IMG/M
3300013832\|Ga0120132_1143653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300014325\|Ga0163163_11307991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	787	Open in IMG/M
3300014497\|Ga0182008_10976945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	503	Open in IMG/M
3300015371\|Ga0132258_11794621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1546	Open in IMG/M
3300015374\|Ga0132255_104315595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	603	Open in IMG/M
3300017994\|Ga0187822_10084420	Not Available	947	Open in IMG/M
3300018468\|Ga0066662_12090859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300019888\|Ga0193751_1003657	All Organisms → cellular organisms → Bacteria	8957	Open in IMG/M
3300020070\|Ga0206356_10813453	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300020070\|Ga0206356_10998935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300020078\|Ga0206352_11325572	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300020081\|Ga0206354_10441341	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300020082\|Ga0206353_11136636	All Organisms → cellular organisms → Bacteria	4942	Open in IMG/M
3300024181\|Ga0247693_1019558	Not Available	897	Open in IMG/M
3300024323\|Ga0247666_1009094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2199	Open in IMG/M
3300025909\|Ga0207705_10454674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	993	Open in IMG/M
3300025909\|Ga0207705_10841828	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300025911\|Ga0207654_10100737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1779	Open in IMG/M
3300025917\|Ga0207660_10215600	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300025917\|Ga0207660_11333989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	582	Open in IMG/M
3300025920\|Ga0207649_10114930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1804	Open in IMG/M
3300025921\|Ga0207652_10538275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1050	Open in IMG/M
3300025927\|Ga0207687_11752047	Not Available	532	Open in IMG/M
3300025944\|Ga0207661_10452664	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300025944\|Ga0207661_10852905	Not Available	839	Open in IMG/M
3300025945\|Ga0207679_11927178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300026023\|Ga0207677_11860788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300026041\|Ga0207639_10612729	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300026041\|Ga0207639_11443299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	646	Open in IMG/M
3300026041\|Ga0207639_11614733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	608	Open in IMG/M
3300026078\|Ga0207702_12218513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300026319\|Ga0209647_1036753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2791	Open in IMG/M
3300026816\|Ga0207509_101257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1114	Open in IMG/M
3300028872\|Ga0307314_10092117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	817	Open in IMG/M
3300030511\|Ga0268241_10063852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	809	Open in IMG/M
3300030511\|Ga0268241_10092477	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300031232\|Ga0302323_102563332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300031474\|Ga0170818_112535298	Not Available	573	Open in IMG/M
3300031938\|Ga0308175_100365761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1495	Open in IMG/M
3300031938\|Ga0308175_100734533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1075	Open in IMG/M
3300031938\|Ga0308175_101279296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	817	Open in IMG/M
3300031939\|Ga0308174_10007857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5964	Open in IMG/M
3300031939\|Ga0308174_10770354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	807	Open in IMG/M
3300032001\|Ga0306922_10697504	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300032067\|Ga0318524_10023681	All Organisms → cellular organisms → Bacteria	2774	Open in IMG/M
3300032261\|Ga0306920_101089908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1159	Open in IMG/M
3300032829\|Ga0335070_10206272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1954	Open in IMG/M
3300032893\|Ga0335069_10137950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3035	Open in IMG/M
3300032897\|Ga0335071_10898546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	834	Open in IMG/M
3300032954\|Ga0335083_10067799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3662	Open in IMG/M
3300033158\|Ga0335077_11576363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	626	Open in IMG/M
3300033290\|Ga0318519_10729007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300034268\|Ga0372943_0112565	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1615	Open in IMG/M
3300034268\|Ga0372943_0623938	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.74%
Host-Associated	Host-Associated	28.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.29%
Plants	Host-Associated → Plants	28.26%
Aquatic	Environmental → Aquatic	1.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.42%
Freshwater	Environmental → Aquatic → Freshwater	1.45%
Rhizome	Host-Associated → Plants → Rhizome	1.45%
Peat	Environmental → Terrestrial → Peat	0.72%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.72%
Roots	Host-Associated → Plants → Roots	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.83%
Loam	Environmental → Terrestrial → Soil → Loam	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.42%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.45%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	1.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.72%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.35%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.17%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.45%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	1.45%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.72%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.72%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.72%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.72%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	10.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.35%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.35%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.62%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.17%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.45%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.45%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.72%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.72%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.72%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.72%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.72%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.72%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005891	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300013832	Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026816	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-B (SPAdes)	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N56_05683190	2170459012	Grass Soil	MDWPAPLTVGNVAAELRCSEDEVRALIRDGELQTVACGIRPGLVPRHQLDDYLRRLRHRLNDSARSSTAP
FE1_06884950	2189573002	Grass Soil	MREVAAELGCSEDDVRALIREGELKTVACGIRLGLVPRHILDAYLRRLEHRLTSSTKT
C688J35102_1209741216	3300002568	Soil	VFVGDLMLLWRSDTSAVEWPAPLTVRQVAAELGCSEDEVRALIRVRELQTVACGIRPGLVPRHQLDDYLRRHRHRLRNDS*
soilL2_101667058	3300003319	Sugarcane Root And Bulk Soil	VDRPAPLTLGEVAVELRCSEDEVRALIRDGELQTVACGIRPGLVPRHRLDDYLRRHRRRLEGSAGSSAAS*
soilH1_100224702	3300003321	Sugarcane Root And Bulk Soil	MDWPAPLSVREISVELECSEDEVRALIRDGELRTVACGIRPGLVPRHELDSYVRRLRHRGSNAPTTP*
soilH1_101651904	3300003321	Sugarcane Root And Bulk Soil	MDRTAPLTVREISAELGRPEDEIRALIRDGELRTVACGIRPGLVPRHELDDYLRRHRSRLGGRDLPAGSSREPEASG*
soilH1_102953493	3300003321	Sugarcane Root And Bulk Soil	MDRPAPLTVREVALELGCSEDEVRALIRAGELQTVACGIRPGLVPRHRLDDYRRRLQRRLAG*
rootH1_101741482	3300003323	Sugarcane Root And Bulk Soil	VEEVAAELGCAEDEVRALIRDGELQTVACGIRPGLVPRHRLDDYLRRHRRRLEGSAGSSAAS*
rootH1_102113992	3300003323	Sugarcane Root And Bulk Soil	MDWPAPLSVREISVELECSEDEVRALIRDGELRTVACGIRPGLVPRHELDAYVRRLRHRGSNAPTTP*
soilH2_100414343	3300003324	Sugarcane Root And Bulk Soil	MDRPAPLTVSEVAVELECSEDDVRALIREGELETVACGVRPGLVPRHRLDDYLRRQRRRREASSGSSAAP*
soilH2_1005747511	3300003324	Sugarcane Root And Bulk Soil	MDWPAPLSVREISVELECSEDEVRALIRDGELRTVACGIRPGLVPRHEFDAYVRRLRHRGSNAPTTP*
Ga0062593_1001513872	3300004114	Soil	MDWPEPLTVHEVSIELRCSEDEVRALIRDGELRTVACGIRPGLVPRHEFDAYVRRLRHRSGSQPSGSRPTA*
Ga0062589_1007579832	3300004156	Soil	MDWPAPLSVREVAAELCCSEDEVRALIRDGELQTVACGIRPGLVPRHQLDDYRRRLRHRVKDSA*
Ga0062595_1011357682	3300004479	Soil	MEWPAPLTVGEVATELSCSEDDVRGLIRDGELQTVACGIRPGLVPRHELDAYVRRLQYRLRSSNPA*
Ga0062594_1008285011	3300005093	Soil	MDWPAPLTVREVSAELRCTEDEVRALIREGELSTVACGIRPGLVPRHQLDDYLRRRRHELSDSDRASTTP*
Ga0062594_1019866962	3300005093	Soil	MDWPAPLTVREVAAELRCAEDEVRALIRHGELQTVACGVRPGLVPRHQLDDYLRRSAHRREDSDRASTTP*
Ga0074072_10131275	3300005260	Soil	VEWPAPLTIGEVAAELACSEDDVRALIRDGRLETVACGVRPGLVPRHRLDAYLRRREYELQRVVPVREQLP*
Ga0070658_101747952	3300005327	Corn Rhizosphere	MDWPAPLTVGELSAELQCSEEEVRALIRGGELRTVACGVRPGLVPRHELDAYLRRIPHEVGDSRRPSATA*
Ga0070683_1000030145	3300005329	Corn Rhizosphere	MDWPAPLSVREVAVELRCSEDDVRALIRNGELETVACGVRPGLVPRHRLDDYVRRHRRRLDSSAGSSTPS*
Ga0070683_1000134307	3300005329	Corn Rhizosphere	MQEPDRLTVREIAVELGCTEEDVRGLIREGELRTVACGIRPGLVPRHVLLAYQRRLRHRG
Ga0070683_1013067002	3300005329	Corn Rhizosphere	MEWPAPLTVGEVAAELGCSDDDVRALIREGEPQTVACGIRPGLVPRHVFDAYLRRLEHRLRSSTTP*
Ga0070680_1000514091	3300005336	Corn Rhizosphere	MQEPDRLTVREIAVELSCTEEDVRGLIREGELRTVACGIRPGLVPRHVLVAYQRRLRHRG
Ga0070680_1001849853	3300005336	Corn Rhizosphere	MDWPAPLTVREVAAELRCAEDEVRALIRHGELQTVACGVRPGLVPRHQLDDYLRRSARREDSDRASTTP*
Ga0070675_1016374382	3300005354	Miscanthus Rhizosphere	AELRCTEDEVRALIREGELTTVACGIRPGLVPRHQLDDYLRRRRHELSDSDRASTTP*
Ga0070671_1011205202	3300005355	Switchgrass Rhizosphere	VDRPAPLTVRELAAELCCSEDEVRALIREGELRTVACGIRPGLVPRHEIDAYVRRLRHRLKDSERSSTTP*
Ga0070673_1016140752	3300005364	Switchgrass Rhizosphere	MDWPAPLTVREVAAELRCAEDEVRALIRHGELQTVACGVRPGLVPRHQLNDYLRRSAHRREDSDRASTTP*
Ga0070714_1003992101	3300005435	Agricultural Soil	KELAAELECSEDAVRQLIRDGELNTVACGIRPGLIPRHQVDAYLRRLANRKRATN*
Ga0070714_1005325022	3300005435	Agricultural Soil	MDRPAPLTISEVAAEISCSEDDVRALIRDGELQTVACGVRPGLVPRHRLDEYLRRRRRRLEDAAREP*
Ga0070714_1019203702	3300005435	Agricultural Soil	MDSPAPLTIRDVAAELCISEDEVRALIRDGELQTVACGVRPGLVPRHRLDDYLRRYRRRLEDSGSSTES*
Ga0070713_1003401104	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MGEPLTVKQIAAERGCAEEQVRALIRDGELRTVACGIRPGLVPHHEFEAYRRRLRAAARD
Ga0070681_100960364	3300005458	Corn Rhizosphere	MEWPAPLTVGEVAAELGCSDDDVRALIREGEPQTVACGIRPGLVPRHVFDAYLRRLEHRLRSSPTP*
Ga0070681_112931311	3300005458	Corn Rhizosphere	DTSGMEWPAPLTVREVAAELECSEDEVRSLIRGGELQTVACGIRPGLVPRHTLDAYLRRLQHRLNSTTP*
Ga0070741_104256392	3300005529	Surface Soil	VDRPAPLSVPEIAVELGCTEEEVRALIRDGELQTVACGIRPGLVPRHRLDEYVRRHRRRIEDSAESSTRN*
Ga0070679_1001132486	3300005530	Corn Rhizosphere	MDWPAPLTVREVAVELRCSEDDVRALIRNGELETVACGVRPGLVPRHRLDDYVRRHRRRLDSSAGSSTPS*
Ga0070679_1006192562	3300005530	Corn Rhizosphere	MEWPAPLTVHEVAAELGCTEDDVRALIRAGDLETVACGVRPGLVPRHRLDDYLRRLEHRLESSTTQ*
Ga0070734_100263562	3300005533	Surface Soil	VERPAPLSVREVAVELGCSEDEVRALIRDGELQTVACGIRPGLVPRFQLDDYLRRHRSRLRGPAGASRRAGCT*
Ga0070684_1004433031	3300005535	Corn Rhizosphere	MQEPDRLTVREIAVELSCTEEGVRGLIREGELRTVACGIRPGLVPRHVLLAYQRRLRHRG
Ga0070731_102967912	3300005538	Surface Soil	VSSGSTNWPEPMSVREVSAELDCSEEEVRDLIREGELKTVACGVRPGLVPRHVLDDYVRRHRRETTA*
Ga0068853_1014214352	3300005539	Corn Rhizosphere	MEWPAPLTIQEVAVELGSSEGDVRALIREGELQTVACGIRPGLVPRHQLDAYLRRLRYRLGSSTTP*
Ga0070695_1015352211	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	EVAAELRCAEDEVRALIRHGELQTVACGVRPGLVPRHQLDDYLRRSEHRREDSDRASTTP
Ga0070696_1010643882	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VSAELGCSEDEVRALIRDGELRTVACGIRPGLVPRHEFDDYLRRLKHQRSSSQRSST*
Ga0068855_1007953082	3300005563	Corn Rhizosphere	MDWPAPLTVGELSAELQCSEEEVRALIRGGELRTVACGVRPGLVPRHELDAYLRRIRHEVGDSRRPSATA*
Ga0070664_1022844791	3300005564	Corn Rhizosphere	MDWPAPLTVREVSAELRCTEDEVRALIRAGELSTVACGIRPGLVPRHQLDDYLRRRRHELSDSDRASTTP*
Ga0068857_1020680812	3300005577	Corn Rhizosphere	VRRGPETGAAATSDTSGMEWPAPLTVGEVATELSCSEDDVRGLIRDGELQTVACGIRPGLVPRHELDAYVRRLQYRLRSSNPA*
Ga0068856_1011999692	3300005614	Corn Rhizosphere	MQEPERLTVRDIALELDCAEDDVRALIREGELRTVACGIRPGLVPRHELDAYRRRVLHGAAGPPTQPLP*
Ga0068856_1024518071	3300005614	Corn Rhizosphere	SRPRPAAARRDTSGMDWPAPLTVREVAAELRCAEDEVRALIRHGELQTVACGVRPGLVPRHQLDDYLRRSARREDSDRASTTP*
Ga0068852_1028335051	3300005616	Corn Rhizosphere	MQEPERLTVRDIALELDCAEDDVRALIREGELRTVACGIRPGLVPRHELDAYRRRVLHRAAGAPTQPLP*
Ga0075283_10178392	3300005891	Rice Paddy Soil	MDWPAPLSVREISAELECSEDDVCALIRNGELQTVACGIRPGLVPRHEFDAYVRRLRHRRGDSPTTP*
Ga0070717_1001187211	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VSSGSADWPEPLSVREVSTELECSEEEVRALIRNGELKTVACGVRPGLVPRHVLDDYLRRHRRETNA*
Ga0079222_101214093	3300006755	Agricultural Soil	MDWPAPLTVREVAAELRCAEDEVRALIRHGELQTVACGVRPGLVPRHQLDDYLRRSARRREDSDRASTTP*
Ga0079220_102078352	3300006806	Agricultural Soil	MDWPAPLTVREVAAELRCAEDEVRALIRHGELQTVACGVRPGLVPRHQLDDYLRRSEHRREDSDRASTTP*
Ga0105240_102825674	3300009093	Corn Rhizosphere	MEWPAPLTVHEVAAELGCTEDDVRALIRAGELETVACGVRPGLVPRHRLDDYLRRLEHRLESSTTQ*
Ga0105245_104267762	3300009098	Miscanthus Rhizosphere	VRELAAELCCSEDEVRALIREGELRTVACGIRPGLVPRHEIDAYVRRLRHRLKDSERSSTTP*
Ga0105245_118555622	3300009098	Miscanthus Rhizosphere	MPEPERLTVRDIALELDCAEDDVRALIREGELRTVACGIRPGLVPRHELDAYRRRVLHRAVVPPTSP*
Ga0105245_120542152	3300009098	Miscanthus Rhizosphere	REAAAELGCSEDEVRSLIREGELQTVACGIRPGLIPRHILDAYLNRLRARSSTTP*
Ga0126318_110950132	3300010152	Soil	MEQPNALTVRDLAVELGRTEEDVRTLIREGELKTVACGIRPGLVPRHELDAYRRRAHHRGDD*
Ga0126376_108837023	3300010359	Tropical Forest Soil	APLSVREISTELGCSEDEVRTLIREGEPRTVACGIRPGLVPRHEFDAYLRRLKYKLGQA*
Ga0126379_101428636	3300010366	Tropical Forest Soil	MDWPAPLTVREVSAELRCSEDEVRGLIRDGELQTVACGIRPGLVPRHVLDDYLRRHQRRLGDAARASAKP*
Ga0134128_100586814	3300010373	Terrestrial Soil	MDWPAPLTVREISVELDCSEDEVRGLIRDGELRTVACGIRPGLVPRHEFDAYVRRLEHRRRESDRSSAMS*
Ga0134128_118659761	3300010373	Terrestrial Soil	AARDTSTMDRPAAPLTISEVAVELACSEDEVRSLIREGELETVACGIRPGLVPRHRLDDYLRRQRRRLERSAESSTP*
Ga0105239_126966672	3300010375	Corn Rhizosphere	MQEPDRLTVRDLALELRCTEEDIRALIREGELRTVACGIRPGLVPRHELDAYRRRLQHRG
Ga0134124_107757412	3300010397	Terrestrial Soil	ELRCTEDEVRALIREGELSTVACGIRPGLVPRHQLDDYLRRRRHELSDSDRASTTP*
Ga0138514_1000630622	3300011003	Soil	VREVAAELGCSEDDVRALIRDGELQTVACGIRPGLVPRHIPDAYLLRLKHRLRSSTTP*
Ga0137376_113995641	3300012208	Vadose Zone Soil	MEWPAPLTVREVAAELGSSEDDVRALIREGELQTVACGIRPGLVPRHILDAYLRRLEHRLRSSTT
Ga0137379_105389333	3300012209	Vadose Zone Soil	LTVREISAELRCSEDEVRALISGGELKTVACGIRPGLVPRHEFDAYLRRLQHQRSNSHRSSTTP*
Ga0137377_110105151	3300012211	Vadose Zone Soil	VREISAELSCSEEEVRALIRDGELRTVACGIRPGLVPRHEFDDYLRRLKHQRSKSQQSSATP*
Ga0150984_1017462962	3300012469	Avena Fatua Rhizosphere	EAAAELGCSEDDVGALIRDDELRTVACGIRPGLVPRHEFDAYLRRRAKVARP*
Ga0137359_102243902	3300012923	Vadose Zone Soil	MEWPAPLTVGQVAIELGCSEDEARALIRDGELQTVACGIRPGRVPQHELDAYLRRLQHRLRSSNPP*
Ga0164300_104307072	3300012951	Soil	MQEPERLTVRDIALELDCAEDDVRALIREGELRTVACGIRPGLVPRHELDAYRRPVLHGAAGPPTQPLP*
Ga0164300_111766511	3300012951	Soil	MQEPERLTVRDLALELRCTEEDIRALIREGELRTVACGVRPGLVPRHELDAYRRRVQHRG
Ga0164298_100422312	3300012955	Soil	MQEPERLTVRDIALELDCAEDDVRALIREGELRTVACGIRPGLVPRHELDAYRRRVLHRAVVPPTSP*
Ga0164303_102789672	3300012957	Soil	EVSAELRCTEDEVRALIREGELSTVACGIRPGLVPRHQLDDYLRRRRHELSDSDRASTTP
Ga0164301_102687912	3300012960	Soil	MQEPERMTVRDIALELDCAEDDVRALIREGELRTVACGIRPGLVPRHELDAYRRRVLHRAVVPPTSP*
Ga0164308_100561673	3300012985	Soil	MQEPERLTVRDIALELDCAEDDVRALIREGELRTVACGIRPGLVPRHELDAYRRRVRHRAAVPPTSP*
Ga0164308_102559232	3300012985	Soil	MDWPAPLTVREVSAELRCTEDEVRALIREGELTTVACGIRPGLVPRHQLDDYLRRRRHELSDSDRASTTP*
Ga0164308_116448432	3300012985	Soil	VRELAAELCCSEDEVRALIREGELRTVACGIRPGLVPRHQLDAYVRRLRHRLKDSERSSTTP*
Ga0164306_110515742	3300012988	Soil	MDWPAPLTVRKVSPGLGCSVDEVRSLIRDGELKTVACGIRPGLVPRHVLDDYLRRHQVARD*
Ga0157374_111773123	3300013296	Miscanthus Rhizosphere	PAMEWPASLTVPEVAAELVCSQDDVRAPSRDGELQTVACGIRPGLIPRHILDAYLRRLQHRLKSSSPL*
Ga0157374_113499271	3300013296	Miscanthus Rhizosphere	VRELAAELCCSEDEVRALIREGELRTVACGILPGLVPRHEIDAHVRPLRHRLKDSERSSTTP*
Ga0157374_117620302	3300013296	Miscanthus Rhizosphere	MQEPERLTVRDIALELDCAEDDVRALIREGELRTVACGIRPGLVPRHELDAYRRRVQHRG
Ga0157378_118943622	3300013297	Miscanthus Rhizosphere	MNWPAQLTVREVSAELRCSEDEVRALIREGELSTVACGLRPGLVPRHQLHDYLRRRRHELSDSDRASTTP*
Ga0157372_101959132	3300013307	Corn Rhizosphere	LTVQELALELEYSEDDVSALIRAGELRTVACGIRPGRVPRHELDAYRRRLRTVAEPASD*
Ga0120123_10551631	3300013770	Permafrost	MDWPAPLTVREVAVELRCSEDEVRALIREGELQTVACGIRPGLIPRFRLDDYLRRHGRRLEDSAGSSTAP*
Ga0120132_11436532	3300013832	Permafrost	MDRPTPLTVREVSAELRCSEDEVRALIRDGELQTVACGIRPGLVPRHILDAYLRRLEHRLKSSNPA*
Ga0163163_113079912	3300014325	Switchgrass Rhizosphere	VREAAAELGCSEDAVRILIREGELQTVACGIRPGLIPRHILDAYLNRRRARSSTTP*
Ga0182008_109769452	3300014497	Rhizosphere	MEWPAPLTVAEVAAELVCSEEDVRGLIRDGELQTVACGIRPGLVPRHQLDAYLRRLQHRRKSS*
Ga0132258_117946212	3300015371	Arabidopsis Rhizosphere	MQEPERLTLRDIAVELGCTEEDVRALIRAGELRTVACGIRPGLVPRHELAAYQRRLQLRR
Ga0132255_1043155951	3300015374	Arabidopsis Rhizosphere	MDWPAPLTVREVAAELRCAEDEVRALIRHGELQTVACGVRPGLVPRHQLDDYLRRRPKQPGSSTR
Ga0182034_115848502	3300016371	Soil	AAELGCSEDDVRALIRDGELQTVACGIRPGLVPRHQLDDYLRRFRHRLGSSTPP
Ga0187822_100844201	3300017994	Freshwater Sediment	MEWPAPLTVRELAAELGCSEDDVRALIRDGQLRTVACGIRPGLTPRHEVDGYLRRLEHRRRSS
Ga0066662_120908592	3300018468	Grasslands Soil	SAELGCSEDDVRALIREGELKTVACGVRPGLIPRHQLDDYLRRHATELSAPRTD
Ga0193751_10036578	3300019888	Soil	MDWPAPLTVREISAELCCSEDEVRALIREGELRTVACGIRPGLVPRHEFDAYLRRLRHQLNGSHGPSTTP
Ga0206356_108134533	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MEWPAPLTVGEVAAELGCSDDDVRALIREGEPQTVACGIRPGLVPRHVLDAYLRRLEYRLRSSSTP
Ga0206356_109989351	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	IFGSNRSGTLPGMQEPDRLTVREIAVELSCTEEDVRGLIREGELRTVACGIRPGLVPRHVLVAYQRRLRHRG
Ga0206352_113255722	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MDWPAPLTVREVAVELRCSEDDVRALIRNGELETVACGVRPGLVPRHRLDDYVRRHRRRLDSSAGSSTPS
Ga0206354_104413412	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MQEPDRLTVREIAVELGCTEEDVRGLIREGELRTVACGIRPGLVPRHVLVAYQRRLRHRG
Ga0206353_111366369	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MDWPAPLSVREVAVELRCSKDDVRALIRNGELETVACGVRPGLVPRHRLDDYVRRHRRRLESSAGSSTPS
Ga0247693_10195583	3300024181	Soil	MERPAPLTRGEVAAELGCSEDEVRALIRDGESQTVACGIRPGLIPRHILDAYLRRLEHRRKSSNPA
Ga0247666_10090942	3300024323	Soil	MEWPAPLRVGEVAAELGCSEDEVRVLIRDGELQTVACGIRPGLVPRHILDAYLRRLEHRLGSSTPP
Ga0207705_104546742	3300025909	Corn Rhizosphere	MDWPAPLTVGELSAELQCSEEEVRALIRGGELRTVACGVRPGLVPRHELDAYLRRIPHEVGDSRRPSATA
Ga0207705_108418282	3300025909	Corn Rhizosphere	PETGAAATSDTSGMEWPAPLTVGEVATELSCSEDDVRGLIRDGELQTVACGIRPGLVPRHELDAYVRRLQYRLRSSNPA
Ga0207654_101007375	3300025911	Corn Rhizosphere	MEWPAPLTVGEVATELSCSEDDVRGLIRDGELQTVACGIRPGLVPRHELDAYVRRLQYRLRSSNPA
Ga0207660_102156001	3300025917	Corn Rhizosphere	ARPRETGAAATSDTSGMEWPAPLTVGEVATELSCSEDDVRGLIRDGELQTVACGIRPGLVPRHELDAYVRRLQYRLRSSNPA
Ga0207660_113339891	3300025917	Corn Rhizosphere	MDWPAPLTVREVAAELRCAEDEVRALIRHGELQTVACGVRPGLVPRHQLDDYLRRSARREDSDRASTTP
Ga0207649_101149303	3300025920	Corn Rhizosphere	MQEPDRLTVREIAVELSCTEEDVRGLIREGELRTVACGIRPGLVPRHVLVAYQRRLRH
Ga0207652_105382751	3300025921	Corn Rhizosphere	MEWPAPLTVGEVAAELGCSDDDVRALIREGEPQTVACGIRPGLVPRHVFDAYLRRLEHRLRSSPTP
Ga0207687_117520471	3300025927	Miscanthus Rhizosphere	RCSEDEVRALIRDSELHTVASGIRPGLVPRHELDDYLRRRRHELSDSDRASTTP
Ga0207661_104526643	3300025944	Corn Rhizosphere	MDWPAPLSVREVAVELRCSEDDVRALIRNGELETVACGVRPGLVPRHRLDDYVRRHRRRLDSSAGSSTPS
Ga0207661_108529053	3300025944	Corn Rhizosphere	MEWPAPLTVGEVAAELGCSDDDVRALIREGEPQTVACGIRPGLVPRHVFDAYLRR
Ga0207679_119271781	3300025945	Corn Rhizosphere	MQEPDRLTVREIAVELSCTEEDVRGLIREGELRTVACGIRPGLVPRHVLLAYQRRLRHRG
Ga0207677_118607882	3300026023	Miscanthus Rhizosphere	MQESGRLTVRDIALELDCAEDDVRALIREGELRTVACGIRPGLVPRHELDAYRRRVLHGAAGPPTQPLP
Ga0207639_106127292	3300026041	Corn Rhizosphere	MEWPAPLTIQEVAVELGSSEGDVRALIREGELQTVACGIRPGLVPRHQLDAYLRRLRYRLGSSTTP
Ga0207639_114432991	3300026041	Corn Rhizosphere	SDTSGMEWPAPLTVGEVATELSCSEDDVRGLIRDGELQTVACGIRPGLVPRHELDAYVRRLQYRLRSSNPA
Ga0207639_116147331	3300026041	Corn Rhizosphere	VAAELGCSEDDVRALIREGELQTVACGIRPGLVPRHVLDAYLRRLEYRLRSSPTP
Ga0207702_122185131	3300026078	Corn Rhizosphere	RPQSRPRPAAARRDTSGMDWPAPLTVREVAAELRCAEDEVRALIRHGELQTVACGVRPGLVPRHQLDDYLRRSARREDSDRASTTP
Ga0209647_10367533	3300026319	Grasslands Soil	MEWPAPLTRGEVAAELGCSEDEVRRLIRDGELQTVACGVRPGLIPRHILDVYLRRLQHRLGSSNPA
Ga0207509_1012572	3300026816	Soil	MDWPAPLTVREVSAELRCTEDEVRALIREGELTTVACGIRPGLVPRHQLDDYLRRRRHELSDSDRASTTP
Ga0307314_100921171	3300028872	Soil	MEWPAPLTVGEVAIELGCPEDDVRGLIRDGELQTVACGIRPGLVPRHELDAYLRRLQHRLRSSNPA
Ga0268241_100638522	3300030511	Soil	MDSPAPLTIREVAAELRCSEEEVRALIRVGELQTVACGVRPGLVPRFRLDDYLRRQRRRSEERPA
Ga0268241_100924771	3300030511	Soil	MDWPAPLTIREVAVELRCSEDEVRALIRDGELQTVACGVRPGLVPRFRLDDYLRRHRRRLEDSAGSPSQS
Ga0302323_1025633322	3300031232	Fen	MEWPAPLTVREVAAELSCSEDDVRALIRDRELQTVACGIRPGLIPRHQLDAYLSRLQYRLKSSKTP
Ga0170818_1125352982	3300031474	Forest Soil	PAPLTVRELSAELCCSEDEVRALIREGELRTVACGIRPGRVPRHQLDAYLRRLEHRVKDS
Ga0308175_1003657612	3300031938	Soil	MDRPAPLTIREVAAELCCSEDEVRALIRDDELQTVACGIRPGLIPRHRLDDYRRRQRRRLENSAGSSPAP
Ga0308175_1007345332	3300031938	Soil	MEWPAPLTVGEIAAELGCSADEVRALIRDGQLQTVACGIRPGLVPRHRLDDYLRRFPHRAEGSARPATKP
Ga0308175_1012792962	3300031938	Soil	MEWPAPLTVREVAVELRCSEDEVRALIRGGELQTVACGIRPGLVPRHRLDDYRRRHRRRLEGSAGSSAAS
Ga0308174_100078577	3300031939	Soil	MQEPDRLSVRDLAVELDCSEDDIRALIRDGELRTVACGIRPGLVPRRELDAYRRRVQQRG
Ga0308174_107703541	3300031939	Soil	MDWPAPLTVREISVELDCSEDEVRGLIRDGELRTVACGIRPGLVPRHEFDAYVRRLEHRRRESNRSSAMS
Ga0306922_106975042	3300032001	Soil	MGEPLTVKQIAAELGCAEEEVRDGELRTVACGIRPGLVPHHELEAYRRRLRAAARD
Ga0318524_100236814	3300032067	Soil	TVKQIAAELGCAEEEVRALIRDGELRTVACGIRPGLVPHHELEAYRRRLRAAARD
Ga0306920_1010899083	3300032261	Soil	VAAELRCSDDEVRSLISDGELKTVACGIRPGLVPRHVLDDYLRRRRLSDSNRPSATP
Ga0335070_102062722	3300032829	Soil	MERDGLSVRDLAVELGCTEDDVRALIRDGELRTVACGIRPGLVPRHELDDYRRRLRYRAA
Ga0335069_101379503	3300032893	Soil	VAEADRLTVRDLSAELGCTEDDVRALIREGELRTVACGVRSGLVPRHELDAYRRRLRFRAQER
Ga0335071_108985463	3300032897	Soil	VAEADRLTVRDLSAELGCTEDDVRALIREGELRTVACGVRSGLVPRHELDAYRRRLRYRAQER
Ga0335083_100677994	3300032954	Soil	VAEADRLTVRDLSAELGCTEDDVRALIREGELRTVACGVRPGLVPRHELDAYRRRLRFRAQER
Ga0335077_115763633	3300033158	Soil	EADRLTVRDLSAELGCTEDDVRALIREGELRTVACGVRPGLVPRHELDAYRRRLRFRAQE
Ga0318519_107290072	3300033290	Soil	VSEVAAELGCSEDDVRALIREGELQTVACGIRPGLVPRHILDAYLRRLEYRLKSSTP
Ga0372943_0112565_117_329	3300034268	Soil	MERPAPLNVSDVAGELRCSEDEVRALIRDGELQTVACGIRPGLIPRYQLDDYLRRRRHRGEAPDRPSTKS
Ga0372943_0623938_514_705	3300034268	Soil	MEWPAPLTVAEAAVELGCTEEEVRVLIRESELKTVACGIRPGLVPRHELDAYVRRLEHRRNAT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055639

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences