Metagenome / Metatranscriptome Family F055507

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055507
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	73 residues
Representative Sequence	MLPFSDGKHDVYGPDTLEVMCAAFDTAVQLLPPNLQDHERARRKLALLILRHMDRGEPARDLGNLALLDFLTATQ
Number of Associated Samples	121
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.26 %
% of genes near scaffold ends (potentially truncated)	28.99 %
% of genes from short scaffolds (< 2000 bps)	89.86 %
Associated GOLD sequencing projects	120
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.319 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (40.580 % of family members)
Environment Ontology (ENVO)	Unclassified (39.130 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.406 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.33% β-sheet: 0.00% Coil/Unstructured: 38.67%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF13767	DUF4168	9.42
PF04357	TamB	2.17
PF03401	TctC	1.45
PF13683	rve_3	1.45
PF13531	SBP_bac_11	0.72
PF01103	Omp85	0.72
PF07007	LprI	0.72
PF07045	DUF1330	0.72
PF08388	GIIM	0.72
PF02518	HATPase_c	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG2911	Phospholipid transport to the outer membrane protein TamB	Cell wall/membrane/envelope biogenesis [M]	2.17
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.45
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	0.72
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.32 %
Unclassified	root	N/A	37.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.32 %
Unclassified	root	N/A	37.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.32 %
Unclassified	root	N/A	37.68 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	59.42 %
Unclassified	root	N/A	37.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	55.80 %
Unclassified	root	N/A	37.68 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.72 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	37.68 %
Unclassified	root	N/A	37.68 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.80 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	37.68 %
Unclassified	root	N/A	37.68 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	37.68 %
Unclassified	root	N/A	37.68 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.72 %
Variibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter	0.72 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	37.68 %
Unclassified	root	N/A	37.68 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.72 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	0.72 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	0.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	37.68 %
Unclassified	root	N/A	37.68 %
Rhodopseudomonas palustris BisA53	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	0.72 %
Variibacter gotjawalensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	0.72 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	0.72 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_103961950	Not Available	525	Open in IMG/M
3300001164\|JGI11823J13286_1005275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	890	Open in IMG/M
3300001164\|JGI11823J13286_1010202	Not Available	666	Open in IMG/M
3300001661\|JGI12053J15887_10382316	Not Available	678	Open in IMG/M
3300001991\|JGI24743J22301_10001838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3064	Open in IMG/M
3300002568\|C688J35102_118967559	Not Available	619	Open in IMG/M
3300002568\|C688J35102_119245910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
3300004801\|Ga0058860_11829671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	792	Open in IMG/M
3300005093\|Ga0062594_100717379	Not Available	906	Open in IMG/M
3300005162\|Ga0066814_10064401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	630	Open in IMG/M
3300005163\|Ga0066823_10136616	Not Available	533	Open in IMG/M
3300005437\|Ga0070710_11089814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586	Open in IMG/M
3300005441\|Ga0070700_100571213	Not Available	882	Open in IMG/M
3300005444\|Ga0070694_100306352	All Organisms → cellular organisms → Bacteria → Proteobacteria	1219	Open in IMG/M
3300005456\|Ga0070678_101924760	Not Available	559	Open in IMG/M
3300005466\|Ga0070685_10056927	All Organisms → cellular organisms → Bacteria → Proteobacteria	2274	Open in IMG/M
3300005535\|Ga0070684_100114721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis	2418	Open in IMG/M
3300006028\|Ga0070717_10203386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1735	Open in IMG/M
3300006038\|Ga0075365_10170796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1517	Open in IMG/M
3300006847\|Ga0075431_100885596	Not Available	863	Open in IMG/M
3300006854\|Ga0075425_101598023	Not Available	735	Open in IMG/M
3300006871\|Ga0075434_100238723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1837	Open in IMG/M
3300007076\|Ga0075435_100631255	Not Available	929	Open in IMG/M
3300007788\|Ga0099795_10400521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300009147\|Ga0114129_11582436	Not Available	803	Open in IMG/M
3300009553\|Ga0105249_11764250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300010399\|Ga0134127_10609628	Not Available	1121	Open in IMG/M
3300010400\|Ga0134122_11088896	All Organisms → cellular organisms → Bacteria → Proteobacteria	791	Open in IMG/M
3300010403\|Ga0134123_11952711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	644	Open in IMG/M
3300011119\|Ga0105246_10254379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1396	Open in IMG/M
3300011119\|Ga0105246_12569986	Not Available	502	Open in IMG/M
3300011270\|Ga0137391_10568928	Not Available	953	Open in IMG/M
3300012180\|Ga0153974_1056953	Not Available	861	Open in IMG/M
3300012202\|Ga0137363_11715301	Not Available	521	Open in IMG/M
3300012210\|Ga0137378_11829173	Not Available	510	Open in IMG/M
3300012212\|Ga0150985_109283313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	753	Open in IMG/M
3300012212\|Ga0150985_112592393	Not Available	845	Open in IMG/M
3300012212\|Ga0150985_114797153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	845	Open in IMG/M
3300012360\|Ga0137375_10707305	Not Available	822	Open in IMG/M
3300012469\|Ga0150984_121008383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1650	Open in IMG/M
3300012683\|Ga0137398_10791482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300012685\|Ga0137397_10423141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	992	Open in IMG/M
3300012923\|Ga0137359_10718286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	870	Open in IMG/M
3300012960\|Ga0164301_11756030	Not Available	520	Open in IMG/M
3300012984\|Ga0164309_10532631	Not Available	905	Open in IMG/M
3300012986\|Ga0164304_10853437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300012989\|Ga0164305_11024486	Not Available	703	Open in IMG/M
3300013306\|Ga0163162_11191595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	864	Open in IMG/M
3300014968\|Ga0157379_12187027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300015242\|Ga0137412_10871135	Not Available	655	Open in IMG/M
3300015245\|Ga0137409_10229574	All Organisms → cellular organisms → Bacteria → Proteobacteria	1658	Open in IMG/M
3300015371\|Ga0132258_11016910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2095	Open in IMG/M
3300015372\|Ga0132256_102366360	Not Available	634	Open in IMG/M
3300017792\|Ga0163161_10653687	Not Available	871	Open in IMG/M
3300017965\|Ga0190266_10215217	Not Available	932	Open in IMG/M
3300017997\|Ga0184610_1030053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1520	Open in IMG/M
3300018027\|Ga0184605_10000698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10232	Open in IMG/M
3300018028\|Ga0184608_10097984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1222	Open in IMG/M
3300018031\|Ga0184634_10362195	Not Available	665	Open in IMG/M
3300018054\|Ga0184621_10034936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1625	Open in IMG/M
3300018061\|Ga0184619_10035586	Not Available	2118	Open in IMG/M
3300018072\|Ga0184635_10025966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2178	Open in IMG/M
3300018073\|Ga0184624_10082054	Not Available	1359	Open in IMG/M
3300018073\|Ga0184624_10236359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	818	Open in IMG/M
3300018073\|Ga0184624_10261613	Not Available	776	Open in IMG/M
3300018074\|Ga0184640_10322576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	701	Open in IMG/M
3300018081\|Ga0184625_10233818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	963	Open in IMG/M
3300018082\|Ga0184639_10212149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1027	Open in IMG/M
3300018429\|Ga0190272_10970950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	807	Open in IMG/M
3300018466\|Ga0190268_11056903	Not Available	655	Open in IMG/M
3300018469\|Ga0190270_10057691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2744	Open in IMG/M
3300018469\|Ga0190270_10291908	All Organisms → cellular organisms → Bacteria	1447	Open in IMG/M
3300018469\|Ga0190270_10759901	Not Available	970	Open in IMG/M
3300018469\|Ga0190270_11115167	Not Available	823	Open in IMG/M
3300018469\|Ga0190270_11885890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	654	Open in IMG/M
3300018476\|Ga0190274_10979208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	918	Open in IMG/M
3300018481\|Ga0190271_11510661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	788	Open in IMG/M
3300019356\|Ga0173481_10219607	Not Available	836	Open in IMG/M
3300019867\|Ga0193704_1101493	Not Available	502	Open in IMG/M
3300019881\|Ga0193707_1108110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	823	Open in IMG/M
3300019887\|Ga0193729_1110809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1033	Open in IMG/M
3300019996\|Ga0193693_1065708	Not Available	541	Open in IMG/M
3300019999\|Ga0193718_1094320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	620	Open in IMG/M
3300020002\|Ga0193730_1063183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1060	Open in IMG/M
3300021080\|Ga0210382_10456858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
3300021082\|Ga0210380_10424361	Not Available	609	Open in IMG/M
3300021415\|Ga0193694_1033924	Not Available	716	Open in IMG/M
3300025907\|Ga0207645_11108224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300025925\|Ga0207650_11287784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300026142\|Ga0207698_10380837	All Organisms → cellular organisms → Bacteria → Proteobacteria	1342	Open in IMG/M
3300026557\|Ga0179587_10496247	Not Available	801	Open in IMG/M
3300027181\|Ga0208997_1017288	Not Available	1001	Open in IMG/M
3300027181\|Ga0208997_1054934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300027288\|Ga0208525_1047954	Not Available	537	Open in IMG/M
3300027381\|Ga0208983_1025600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1154	Open in IMG/M
3300027383\|Ga0209213_1008174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1866	Open in IMG/M
3300027546\|Ga0208984_1003734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2644	Open in IMG/M
3300027681\|Ga0208991_1140563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300028379\|Ga0268266_10055889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3394	Open in IMG/M
3300028587\|Ga0247828_10853136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300028608\|Ga0247819_10994048	Not Available	530	Open in IMG/M
3300028707\|Ga0307291_1099543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
3300028710\|Ga0307322_10010320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2055	Open in IMG/M
3300028710\|Ga0307322_10053388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	989	Open in IMG/M
3300028712\|Ga0307285_10236606	Not Available	517	Open in IMG/M
3300028713\|Ga0307303_10014904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1431	Open in IMG/M
3300028714\|Ga0307309_10086741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	731	Open in IMG/M
3300028717\|Ga0307298_10008806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2491	Open in IMG/M
3300028722\|Ga0307319_10223957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300028744\|Ga0307318_10126231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	873	Open in IMG/M
3300028754\|Ga0307297_10187357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	719	Open in IMG/M
3300028782\|Ga0307306_10044634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1089	Open in IMG/M
3300028782\|Ga0307306_10086306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	823	Open in IMG/M
3300028790\|Ga0307283_10086718	Not Available	801	Open in IMG/M
3300028796\|Ga0307287_10181243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	800	Open in IMG/M
3300028799\|Ga0307284_10172275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	842	Open in IMG/M
3300028828\|Ga0307312_10258219	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300028872\|Ga0307314_10092962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	814	Open in IMG/M
3300028875\|Ga0307289_10052787	Not Available	1628	Open in IMG/M
3300028875\|Ga0307289_10068964	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300028875\|Ga0307289_10398087	Not Available	566	Open in IMG/M
3300028876\|Ga0307286_10170094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	785	Open in IMG/M
3300030902\|Ga0308202_1006984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1461	Open in IMG/M
3300030902\|Ga0308202_1039817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	827	Open in IMG/M
3300030903\|Ga0308206_1150304	Not Available	560	Open in IMG/M
3300030904\|Ga0308198_1094871	Not Available	517	Open in IMG/M
3300030987\|Ga0308155_1029581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300030990\|Ga0308178_1080746	Not Available	661	Open in IMG/M
3300031091\|Ga0308201_10167179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300031093\|Ga0308197_10239771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300031094\|Ga0308199_1172469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300031095\|Ga0308184_1021183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	700	Open in IMG/M
3300031099\|Ga0308181_1125508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	579	Open in IMG/M
3300031114\|Ga0308187_10364685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300031184\|Ga0307499_10021162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1401	Open in IMG/M
3300031740\|Ga0307468_100502537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	962	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.43%
Host-Associated	Host-Associated	19.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.57%
Plants	Host-Associated → Plants	18.12%
Aquatic	Environmental → Aquatic	10.87%
Human	Host-Associated → Human	0.72%
Fungi	Host-Associated → Fungi	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.87%
Sediment	Environmental → Aquatic → Sediment	9.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.52%
Freshwater	Environmental → Aquatic → Freshwater	1.45%
Digestive System	Host-Associated → Human → Digestive System	0.72%
Roots	Host-Associated → Plants → Roots	0.72%
Mycelium	Host-Associated → Fungi → Mycelium	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.52%
Loam	Environmental → Terrestrial → Soil → Loam	13.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.25%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.45%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.72%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.72%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.72%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	52.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.17%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.72%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.72%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.72%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	40.58%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	9.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.17%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.17%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.17%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.17%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.72%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.72%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.72%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027181	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1039619502	3300000364	Soil	MLPFSDGEHNVYGPDTLEVMCAAYDTAVQLLPPNLQDRERARRRLALLILRHMDRGESERDIVNLACSIS*
F24TB_143002471	3300000550	Soil	MLPSSAMHGVYDPDTLKAMGAAFDTAVQSDYERARRKLALLIIRHMESGEPEANLG
JGI11823J13286_10052753	3300001164	Forest Soil	MLPFTDGKHNVYGPDTLEVMCAAFDTAVQSLPPNLHDHERARRKLALLILRHMYRGEPATDLGNLALRDFLRATQ*
JGI11823J13286_10102022	3300001164	Forest Soil	MLPFSDGKHHDVYGPDTLQVMGAAFDAAVQALPRELQHRERARTRLALLILRHADRGEPATHLSSLSLLDFLRTIQ*
JGI12053J15887_103823162	3300001661	Forest Soil	MLPSSAIYHVYGPDTLKVMGAAFDTAVQSIPPHLQDHERARRRLALLIVRHMESGEPDANLGPLALLDFLRGTQ*
JGI24743J22301_100018384	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	MLPFSDGKHNVYGPDTLEVMCAAYDTAVQLLPSNLQDXERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ*
C688J35102_1189675591	3300002568	Soil	MLSFSDCKRDVYGPDTLQVMCTAFDTAVQSLPPNLKKHERARRRVALLILHHMDRGEPAGSLGNLAVLDFLRTIQ*
C688J35102_1192459101	3300002568	Soil	MLPFNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGESARELGHLALLDFLRATR*
Ga0058860_118296712	3300004801	Host-Associated	MLPFSDGKHNVYGPDTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ*
Ga0062594_1007173792	3300005093	Soil	MLPFSDGKHNVYGPDTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLALLD
Ga0066814_100644011	3300005162	Soil	MLPFSDGEHNVYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ*
Ga0066823_101366161	3300005163	Soil	MLPFSDGKHNVYGPDTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLALLDLLRVTQ*
Ga0070710_110898142	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MLPFSDGKHNVYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ*
Ga0070700_1005712131	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MLPFSDGKHNVYGPDTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIV
Ga0070694_1003063522	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MLPFSDGKHNVYGPDTLEVMCAAYDTAVQLLPQISKIMKERAGDWRSSFFILRHMDRGESERDIVNLALLDFLRVTQ*
Ga0070678_1019247601	3300005456	Miscanthus Rhizosphere	MLPFSDGEHNVYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDLLRVTQ*
Ga0070685_100569271	3300005466	Switchgrass Rhizosphere	PDTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ*
Ga0070684_1001147211	3300005535	Corn Rhizosphere	MLPFSDGKHNVYGPDTLEVMCAAYDTAVQLLPQISKIMKERAGDWRSSFFILRHMDRGESERDIVNLALLD
Ga0070717_102033861	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLPSSAMHGVYDPDTLKAMGAAFDTAVQSIPSHLQDHERVRRRLALLIVRRMDSGEPDANLGTVALLDFLRATQ*
Ga0075365_101707962	3300006038	Populus Endosphere	MLPSSAMHGVYDPDTLKAMGAAFDTAVQSIPPHLQDHERARRRLALLIVRHMELGEPDADLGTVALLDFLRATQ*
Ga0075431_1008855962	3300006847	Populus Rhizosphere	MLPSSAMHGVYDPDTLKVMGAAFDTAVQSIPPHLQDYERARRKLALLIIRHMESGEPDANLGTVALLDFLRATQ*
Ga0075425_1015980232	3300006854	Populus Rhizosphere	MLPSSAMHGVYDPDTLKAMAAAFDTAVQSIPPHLQDHERARRRVALLIVRRMDSGGPGANLGTVALLDFLRTTQ*
Ga0075434_1002387232	3300006871	Populus Rhizosphere	MLPSSAMHGVYDPDTLKAMGAAFDTAVQSIPPHLQDHERARRRVALLIVRRMDSGGPGANLGTVALLDFLRTTQ*
Ga0075424_1010556961	3300006904	Populus Rhizosphere	MLPSSAMHGVYDPDTLKAMAAAFDTAVQSIPPHLQDHERARRRVALLIVRRMDSGG
Ga0075435_1006312551	3300007076	Populus Rhizosphere	MHGVYDPDTLKAMGAAFDTAVQSIPPHLQDHERVRRRLALLIVRRMDSGEPDANLGTVALLDFLRATQ*
Ga0099795_104005211	3300007788	Vadose Zone Soil	MLPFSDGEHNVYGPDTLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ*
Ga0114129_115824361	3300009147	Populus Rhizosphere	MKGTLPMLPSSAMHGVYDPDTLKVMGAAFDTAVQSIPPHLQDYERARRKLALLIIRHMESGEPDANLGTVALLDFLRATQ*
Ga0105249_117642502	3300009553	Switchgrass Rhizosphere	MLPFNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGEPARELGHLALLDFLRATQ*
Ga0134127_106096281	3300010399	Terrestrial Soil	MLPFSDGEHNVYGPDTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ*
Ga0134122_110888961	3300010400	Terrestrial Soil	MLPFSDGEHNVYGPDTLEVMCAAYDTAIQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ*
Ga0134123_119527111	3300010403	Terrestrial Soil	MLPFNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGEPARELGHLY*
Ga0105246_102543793	3300011119	Miscanthus Rhizosphere	MLPFNGGKYDVYGPDTLTVMGAAFDTALELLPPDLQGHERARRKLALLIFRHMDRGEPARELGHLALLDFLKATQ*
Ga0105246_125699861	3300011119	Miscanthus Rhizosphere	MLPFSDGDHNVYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ*
Ga0137391_105689281	3300011270	Vadose Zone Soil	MLPSSAMHGVYDPDTLKAMGAAFDTEVQSIPPHLQDHERVRRRLALLIVRRMDSGEPDANRGTVALLDFLRATQ*
Ga0153974_10569531	3300012180	Attine Ant Fungus Gardens	MLPSSAMHGVYDPDTLKAMGAAFDTAVQSIPPHLQDHERARRRLALLIVRRMDSGEPDANRGTVALLDFLRATQ*
Ga0137363_117153011	3300012202	Vadose Zone Soil	MHGVYDPDTLKAMGAAFDTAVQSIPPYLQDHERARRRLALLIVRRMDSGEPDANLGTVALLDFLR
Ga0137378_118291731	3300012210	Vadose Zone Soil	MLPSSAKHGVYDPDTLKAMGAAFDTAVQSIPPHLQDHERARRRLALLIVRHMESGEPDANLGTVALLDFLRATQ*
Ga0150985_1092833132	3300012212	Avena Fatua Rhizosphere	MLPLNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGEPARELGHLALLDFLRATQ*
Ga0150985_1125923931	3300012212	Avena Fatua Rhizosphere	MLPFNGGKYDVYGPDALEVMGAAFDTALELLPADLQSHERARRKLALLILRHMDRGESARELGHLALLDFLRATQ*
Ga0150985_1147971532	3300012212	Avena Fatua Rhizosphere	VMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ*
Ga0137375_107073052	3300012360	Vadose Zone Soil	MHGVYDPDTLKAMGAAFDTAVQAIPPHLQDHERARRRLALLIVRHMESGEPDANLGTVALLDFLRATQ*
Ga0150984_1210083831	3300012469	Avena Fatua Rhizosphere	NGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGEPARELGHLALLDFLRATQ*
Ga0137398_107914821	3300012683	Vadose Zone Soil	MLPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ*
Ga0137397_104231412	3300012685	Vadose Zone Soil	MLPFSDGKHDVYGPDTLEVMGTAFDTAVQLLPPNLQEHERARRKLALLILRHMDRGVHARDLGNLALLDFLRATQ*
Ga0137359_107182862	3300012923	Vadose Zone Soil	EEEMLPSSAMHGVYDPDTLKAMGAAFDTAVQSIPPHLQDHERVRRRLALLIVRRMDSGEPDANRGTVALLDFLRATQ*
Ga0164301_117560301	3300012960	Soil	MLPFNDGEHNVYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ*
Ga0164309_105326312	3300012984	Soil	MHGVYDPDTLKAMGAAFDTAVQSIPPHLQDHERARRRLALLIVRRMDSGEPDANLGTVALLDFLRATQ*
Ga0164304_108534371	3300012986	Soil	MLLFNGGRYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGESARELGHLALLDFLRATQ*
Ga0164305_110244861	3300012989	Soil	MLPFNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDCGESARELGHLALLDFLRATQ*
Ga0163162_111915952	3300013306	Switchgrass Rhizosphere	MLPFNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGESARELGHLALLDFLRATQ*
Ga0157379_121870271	3300014968	Switchgrass Rhizosphere	MLPFNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLIFRHMDRGEPARELGHLALLDFLKATQ*
Ga0137412_108711351	3300015242	Vadose Zone Soil	MLPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ*
Ga0137409_102295743	3300015245	Vadose Zone Soil	MLPFSDGKHDVYGPDTLEVMGTAFDTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ*
Ga0132258_110169102	3300015371	Arabidopsis Rhizosphere	MHGVYDPDTLKAMGAAFDTAAQSIPPHLQDHERARRRLALLIVRRMDSGEPDANRGTVALLDFLKATQ*
Ga0132256_1023663601	3300015372	Arabidopsis Rhizosphere	MHGVYDPDTLKAMGAAFDTAVQSIPPHLQDHERVRRRLALLIVRRMDSGEPDANRGTVALLDFLKATQ*
Ga0163161_106536871	3300017792	Switchgrass Rhizosphere	MLTFSDGEHNVYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ
Ga0190266_102152173	3300017965	Soil	MLPFSDGEHNVYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ
Ga0184610_10300532	3300017997	Groundwater Sediment	MGRGNKMPPSGDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0184605_100006986	3300018027	Groundwater Sediment	MPPSGDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0184608_100979841	3300018028	Groundwater Sediment	MGRGNKMPPSGDVRYVYSPDKLQVMGAAFDTALLSLPPNLQDHEGARKKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0184634_103621952	3300018031	Groundwater Sediment	GLCRAAYDTAVQLLPANLQDQQRARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ
Ga0184621_100349362	3300018054	Groundwater Sediment	MLPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGESERDVVNLALLDFLRVTQ
Ga0184619_100355862	3300018061	Groundwater Sediment	MLPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ
Ga0184635_100259661	3300018072	Groundwater Sediment	MLPFSDGEHNVYGPDTLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ
Ga0184624_100820541	3300018073	Groundwater Sediment	MLPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ
Ga0184624_102363592	3300018073	Groundwater Sediment	MLLFNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGEPARELGHLALLDFLRATQ
Ga0184624_102616131	3300018073	Groundwater Sediment	MLPFNGDKHAVYGPDTLQVMGAAFDGAVQLLPPHLKEHERARRRLALLILQHMDRGEPARNLGNLAVLDFLRATQ
Ga0184640_103225761	3300018074	Groundwater Sediment	MGRGNKMPPSGDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRA
Ga0184625_102338181	3300018081	Groundwater Sediment	LPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVIQ
Ga0184639_102121492	3300018082	Groundwater Sediment	MLPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVIQ
Ga0190272_109709502	3300018429	Soil	MLPFSDGKHDGKHNVYGPDTLDVMCAAFDTAVQSLPPNLQDHERARRKLALLILRHMDRGEPATDLGNIALLDFFRATQ
Ga0190268_110569031	3300018466	Soil	MLPFSDGEHNVYGPDTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ
Ga0190270_100576912	3300018469	Soil	MLPLNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGEPARELGHLALLDFLRATQ
Ga0190270_102919081	3300018469	Soil	MLPFNGGKYDVYGPDALEVMGAAFDTALELLPADLQSHERARRKLALLILRHMDRGESARELGHLALLDFLRATQ
Ga0190270_107599012	3300018469	Soil	MLPCNDGKHAVYGPDTLQVMGAAFDDAVQLLPLHLKEHERARRRLALLILQHMDRGEPARNLGNLAVLDFLRATQ
Ga0190270_111151671	3300018469	Soil	MLPFSDGEHNVYGPDTLEVMCSAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ
Ga0190270_118858901	3300018469	Soil	MDRQGGTVCLGGGIRMGRGNKMPPSGDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0190274_109792082	3300018476	Soil	MLPISDGKRDVYGPDTLQVMGAAFDAAVQLLPPNLKEHERTRRRLALLILHHTDRGEPAGILVI
Ga0190271_115106611	3300018481	Soil	MLPFNGGKYDVYGPDALEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGESARELGHLALLDFLRATQ
Ga0173481_102196071	3300019356	Soil	MLPFSDGKHNVYGPDTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLALLDLLRVTQ
Ga0193704_11014932	3300019867	Soil	VYSPDKLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0193707_11081101	3300019881	Soil	MPPSGDVRYVYTPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0193729_11108092	3300019887	Soil	MLPFSDGKHDVYGPDTLEVMGTAFDTAVQLLPPNLQEHERARRKLALLILRHMDRGVHARDLGNLALLDFLRATQ
Ga0193693_10657081	3300019996	Soil	MLPFNNGKNDVYGPDTLKVMGAAFDTAVQSIPPHLQNHDRARRKLALLILRHMETRAEPDATHLGTLALLEFLRATQ
Ga0193718_10943201	3300019999	Soil	MLPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGESERDIVNLAL
Ga0193730_10631832	3300020002	Soil	MDRQGGTVRLGGGNRMGRGNKMPPSGDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0210382_104568581	3300021080	Groundwater Sediment	MLPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGESERDTVNLALLDF
Ga0210380_104243612	3300021082	Groundwater Sediment	MLPFNDGKHAVYGPDTLQVMGAEFDGAVQLLPLHLKEHERARRRLALLILQHMDRGEPARNLGNLAVLDFLRATQ
Ga0193694_10339242	3300021415	Soil	MLPFSDGEHNVYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ
Ga0207645_111082242	3300025907	Miscanthus Rhizosphere	HNVYGPDTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ
Ga0207650_112877842	3300025925	Switchgrass Rhizosphere	DTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVT
Ga0207698_103808371	3300026142	Corn Rhizosphere	NVYGPDTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ
Ga0179587_104962471	3300026557	Vadose Zone Soil	MLPFSDGKHNVYSPDTLEVMCAAYDTAVQLLPPKLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ
Ga0208997_10172881	3300027181	Forest Soil	MLPFSDGKHHDVYGPDTLQVMGAAFDAAVQALPRELQHRERARTRLALLILRHADRGEPATHLSSLSLLDFLRTIQ
Ga0208997_10549341	3300027181	Forest Soil	MLPFTDGKHNVYGPDTLEVMCAAFDTAVQSLPPNLHDHERARRKLALLILRHMYRGEPATDLGNLALRDFLRATQ
Ga0208525_10479541	3300027288	Soil	PDTLKAMGAAFDTAVQSIPPHLQDHERARRRLALLIVRRMDSGEPDANLGTVALLDFLRATQ
Ga0208983_10256002	3300027381	Forest Soil	MLPFTDGKHNVYGPDTLEVMCAAFDTAVQSLPPNLHDHERARRKLALLILRHMDRGEPATDLGNLALRDFLRATQ
Ga0209213_10081743	3300027383	Forest Soil	MLPFSDGKHHDVYGPDTLQVMGAAFDAAVQALPRELQDRERVRTRLALLILRHADRGEPATHLSSLSLLDFLRTIQ
Ga0208984_10037344	3300027546	Forest Soil	MLPFSDGKHHDVYGPDTLQVMGAAFDAAVQALPRELQDRERARTRLALLILRHADRGEPATHLSSLSLLDFLRTIQ
Ga0208991_11405631	3300027681	Forest Soil	MLPFSDGKHHDVYGPDTLQVMGAAFDAAVQALPRELQDRERVRTRLALLILRHADRGEPATHLSSLSLLDFL
Ga0268266_100558894	3300028379	Switchgrass Rhizosphere	MLPFSDGKHNVYGPDTLEVMCAAYDTAVQLLPSNLQDHERARRRLALLILRHMDRGESERDIVNLAL
Ga0247828_108531362	3300028587	Soil	MLPFNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGESARELGHLALLD
Ga0247819_109940481	3300028608	Soil	IYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ
Ga0307291_10995432	3300028707	Soil	MPPSGDVRYVYSPDKLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASIA
Ga0307322_100103202	3300028710	Soil	MLPFSDGQHNVYGPDILEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ
Ga0307322_100533881	3300028710	Soil	MDRQGGTVRLGGGNRMGRGNKMPPSGDVRYVYSPDKLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0307285_102366062	3300028712	Soil	MLPFNGDKHAVYGPDTLQVMGAAFDGAVQLLPPHLKEHERARRRLALLILQHMDRGEPARNLGNPAVLDFLRATQ
Ga0307303_100149041	3300028713	Soil	MPPSGDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASI
Ga0307309_100867411	3300028714	Soil	MDRQGGTIRLGGGNRMGRGNKMPPSGDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0307298_100088062	3300028717	Soil	MPPSDDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0307319_102239572	3300028722	Soil	LQVMGAAFDTALLSLPPNLQDHEGARKKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0307318_101262311	3300028744	Soil	VQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ
Ga0307297_101873572	3300028754	Soil	MLPFNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGEPARELGHLALLDFLRATQ
Ga0307306_100446341	3300028782	Soil	TLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ
Ga0307306_100863061	3300028782	Soil	TLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0307283_100867182	3300028790	Soil	MLSFSDCKRDVYGPDTLQVMCTAFDTAVQSLPPNLKKHERARRRVALLILHHMDRGEPAGSLGNLAVLDFLRTIQ
Ga0307287_101812431	3300028796	Soil	MLPFNGGKYDVYGPDSLEVMGAAFDIALQLLPTDLQGHERARRKLALLILRHMDRGEPVRELGHLALLDFLRATQ
Ga0307284_101722752	3300028799	Soil	DTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVTQ
Ga0307312_102582191	3300028828	Soil	DGKHAVYGPDTLQVMGAEFDGAVQLLPLHLKEHERARRRLALLILQHMDRGEPARNLGNLAVLDFLRATQ
Ga0307314_100929622	3300028872	Soil	MLPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDI
Ga0307289_100527875	3300028875	Soil	MLQFSDGKHHDVYGPDTLQVMGAAFDAAVQALPRELQDRERARTRLALLILRHADRGEPATHLSSL
Ga0307289_100689642	3300028875	Soil	MLPFNNGKNDVYGPDTLKVMGAAFDAAVQSIPPHLQNHDRARRKLALLILRHMETRAEPDATHLGTLALLEFLRATQ
Ga0307289_103980871	3300028875	Soil	MLPFSDGKHDVYGPDTLEVMCAAFDTAVQLLPSNLQGHERARRKLALLILQHMDRGEPERDIVNLALLDFLRATQ
Ga0307286_101700942	3300028876	Soil	WGGENKMPPSGDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0308202_10069842	3300030902	Soil	MLPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPTNLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ
Ga0308202_10398172	3300030902	Soil	MLQFSDGKHHDVYGPDTLEVMCAAFDTAVQSLPPNLHDHERARRKLALLILRHMDRGEPATELGNLALRDFLRATQ
Ga0308206_11503041	3300030903	Soil	MLPFSDGKHDVYGPDTLEVMCAAFDTAVQLLPPNLQDHERARRKLALLILRHMDRGEPARDLGNLALLDFLTATQ
Ga0308198_10948711	3300030904	Soil	PSGDVRYVYSPDKLQVMGAAFDTALLSLPPNLQDHEGARKKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0308155_10295812	3300030987	Soil	MPPIGDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0308178_10807461	3300030990	Soil	KMPPSGDIRYVYSPDTLQVIGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0308201_101671792	3300031091	Soil	MLPFSDGQHNVYGPDTLEVMCAAYDTAVQLLPPNLQDHERARRRLALLILRHMDRGEPEGDIVNLALLDFLRVAQ
Ga0308197_102397711	3300031093	Soil	RLGGGNGMGRGNKMPPSGDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0308199_11724691	3300031094	Soil	TVRLGGGNRMGRGNKMPPSDDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0308184_10211831	3300031095	Soil	MLQFSDGKHHDVYGPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0308181_11255081	3300031099	Soil	RYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHANRGEPDADLGTLALLDFKRASQ
Ga0308187_103646851	3300031114	Soil	VRLGGGNRMGRGNKMPPSGDVRYVYSPDTLQVMGAAFDTALLSLPPNLQDHEGARRKLALIILRHADRGEPDADLGTLALLDFKRASQ
Ga0307499_100211623	3300031184	Soil	IGSKPRQIVGRMLPFSDGEHNVYGPDTLEVMCAAYDTAVQLLPANLQDHERARRRLALLILRHMDRGESERDIVNLALLDFLRVTQ
Ga0307468_1005025372	3300031740	Hardwood Forest Soil	MLPFNGGKYDVYGPDTLEVMGAAFDTALELLPPDLQGHERARRKLALLILRHMDRGESARELGHLALLDFLRATQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F055507

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences