NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F055122

Metagenome / Metatranscriptome Family F055122

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F055122
Family Type Metagenome / Metatranscriptome
Number of Sequences 139
Average Sequence Length 46 residues
Representative Sequence MNGTSVIDVGRPAVRRRTLSRSLRGGLKGGEYTWAVAFVVPY
Number of Associated Samples 123
Number of Associated Scaffolds 139

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 99.26 %
% of genes near scaffold ends (potentially truncated) 97.12 %
% of genes from short scaffolds (< 2000 bps) 92.81 %
Associated GOLD sequencing projects 120
AlphaFold2 3D model prediction Yes
3D model pTM-score0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.842 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(15.827 % of family members)
Environment Ontology (ENVO) Unclassified
(25.180 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.043 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 35.71%    β-sheet: 0.00%    Coil/Unstructured: 64.29%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.27
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 139 Family Scaffolds
PF13416SBP_bac_8 41.73
PF01547SBP_bac_1 5.04
PF04909Amidohydro_2 1.44
PF00528BPD_transp_1 1.44
PF13458Peripla_BP_6 0.72
PF00884Sulfatase 0.72
PF02653BPD_transp_2 0.72


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.84 %
UnclassifiedrootN/A2.16 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2032320006|FACEOR_FYWIORV02G2ZRIAll Organisms → cellular organisms → Bacteria539Open in IMG/M
3300000955|JGI1027J12803_107322660All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300000956|JGI10216J12902_100958877All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300002886|JGI25612J43240_1082182All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300002908|JGI25382J43887_10099601All Organisms → cellular organisms → Bacteria1538Open in IMG/M
3300004156|Ga0062589_101445198All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium673Open in IMG/M
3300004267|Ga0066396_10121204All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300004281|Ga0066397_10152753All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300004801|Ga0058860_11382274All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300005295|Ga0065707_10198042All Organisms → cellular organisms → Bacteria1325Open in IMG/M
3300005332|Ga0066388_102009917All Organisms → cellular organisms → Bacteria1036Open in IMG/M
3300005332|Ga0066388_104801418All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium687Open in IMG/M
3300005440|Ga0070705_101416155All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300005467|Ga0070706_100202254All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium1855Open in IMG/M
3300005467|Ga0070706_100208845All Organisms → cellular organisms → Bacteria1823Open in IMG/M
3300005467|Ga0070706_101649106All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium584Open in IMG/M
3300005468|Ga0070707_100320477All Organisms → cellular organisms → Bacteria1506Open in IMG/M
3300005518|Ga0070699_101169698All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300005536|Ga0070697_100370853All Organisms → cellular organisms → Bacteria1238Open in IMG/M
3300005536|Ga0070697_102092459All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300005536|Ga0070697_102093688All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium506Open in IMG/M
3300005547|Ga0070693_100405043All Organisms → cellular organisms → Bacteria947Open in IMG/M
3300005558|Ga0066698_10584813All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300005586|Ga0066691_10146606All Organisms → cellular organisms → Bacteria1356Open in IMG/M
3300005598|Ga0066706_10575783All Organisms → cellular organisms → Bacteria894Open in IMG/M
3300005713|Ga0066905_101663122All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300005764|Ga0066903_107875284All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017547Open in IMG/M
3300005841|Ga0068863_101731391All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium635Open in IMG/M
3300005875|Ga0075293_1006194All Organisms → cellular organisms → Bacteria1258Open in IMG/M
3300006173|Ga0070716_100946055All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300006579|Ga0074054_11462178All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium725Open in IMG/M
3300006796|Ga0066665_10644626All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017844Open in IMG/M
3300006796|Ga0066665_10745303All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300006797|Ga0066659_11069278All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017674Open in IMG/M
3300006806|Ga0079220_10670435All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300006854|Ga0075425_100911695All Organisms → cellular organisms → Bacteria1004Open in IMG/M
3300006854|Ga0075425_102346506All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300006904|Ga0075424_101684496All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300006914|Ga0075436_100603714All Organisms → cellular organisms → Bacteria809Open in IMG/M
3300006914|Ga0075436_100772011All Organisms → cellular organisms → Bacteria714Open in IMG/M
3300006954|Ga0079219_10336446All Organisms → cellular organisms → Bacteria960Open in IMG/M
3300007076|Ga0075435_100267500All Organisms → cellular organisms → Bacteria1457Open in IMG/M
3300009012|Ga0066710_101025423All Organisms → cellular organisms → Bacteria1274Open in IMG/M
3300009090|Ga0099827_11231072All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300009094|Ga0111539_11341371All Organisms → cellular organisms → Bacteria830Open in IMG/M
3300009147|Ga0114129_11691716All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300009162|Ga0075423_12195605All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300009792|Ga0126374_10243229All Organisms → cellular organisms → Bacteria1169Open in IMG/M
3300010043|Ga0126380_12125603All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium517Open in IMG/M
3300010046|Ga0126384_12392866All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300010047|Ga0126382_11755865All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300010109|Ga0127497_1111906All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300010303|Ga0134082_10072633All Organisms → cellular organisms → Bacteria1339Open in IMG/M
3300010323|Ga0134086_10051626All Organisms → cellular organisms → Bacteria1395Open in IMG/M
3300010333|Ga0134080_10173306All Organisms → cellular organisms → Bacteria924Open in IMG/M
3300010333|Ga0134080_10362143All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300010336|Ga0134071_10118138All Organisms → cellular organisms → Bacteria1271Open in IMG/M
3300010337|Ga0134062_10015879All Organisms → cellular organisms → Bacteria2824Open in IMG/M
3300010359|Ga0126376_11041577All Organisms → cellular organisms → Bacteria822Open in IMG/M
3300010361|Ga0126378_11253248All Organisms → cellular organisms → Bacteria838Open in IMG/M
3300010361|Ga0126378_13470743All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300010366|Ga0126379_13554649All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300010376|Ga0126381_103267927All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300010399|Ga0134127_12856281All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300010401|Ga0134121_12939139All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300011269|Ga0137392_11193855All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium619Open in IMG/M
3300011270|Ga0137391_11434511All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300011271|Ga0137393_10712819All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300012198|Ga0137364_10260689All Organisms → cellular organisms → Bacteria1282Open in IMG/M
3300012207|Ga0137381_10263362All Organisms → cellular organisms → Bacteria1499Open in IMG/M
3300012207|Ga0137381_11484650All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium570Open in IMG/M
3300012211|Ga0137377_11106949All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300012350|Ga0137372_10199610All Organisms → cellular organisms → Bacteria1602Open in IMG/M
3300012350|Ga0137372_10400713All Organisms → cellular organisms → Bacteria1039Open in IMG/M
3300012355|Ga0137369_10494289All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300012361|Ga0137360_10512236All Organisms → cellular organisms → Bacteria1022Open in IMG/M
3300012582|Ga0137358_10032307All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3437Open in IMG/M
3300012685|Ga0137397_11309515All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium515Open in IMG/M
3300012911|Ga0157301_10313391All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300012918|Ga0137396_10646544All Organisms → cellular organisms → Bacteria781Open in IMG/M
3300012922|Ga0137394_11526984All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300012923|Ga0137359_10870431All Organisms → cellular organisms → Bacteria778Open in IMG/M
3300012925|Ga0137419_10168903All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00171595Open in IMG/M
3300012930|Ga0137407_10528234All Organisms → cellular organisms → Bacteria1104Open in IMG/M
3300012971|Ga0126369_13542282All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300012972|Ga0134077_10235607All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300013308|Ga0157375_11393843All Organisms → cellular organisms → Bacteria826Open in IMG/M
3300014326|Ga0157380_11050338All Organisms → cellular organisms → Bacteria851Open in IMG/M
3300015374|Ga0132255_102562608All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales779Open in IMG/M
3300016371|Ga0182034_10962844All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300017656|Ga0134112_10001066All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium7971Open in IMG/M
3300017657|Ga0134074_1142727All Organisms → cellular organisms → Bacteria835Open in IMG/M
3300017659|Ga0134083_10001134All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium7559Open in IMG/M
3300017944|Ga0187786_10558255All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300017973|Ga0187780_10846231All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300017994|Ga0187822_10162104All Organisms → cellular organisms → Bacteria725Open in IMG/M
3300018089|Ga0187774_10264224All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium982Open in IMG/M
3300018433|Ga0066667_11547561All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300018482|Ga0066669_11862800All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300019248|Ga0180117_1128441All Organisms → cellular organisms → Bacteria910Open in IMG/M
3300021151|Ga0179584_1414370All Organisms → cellular organisms → Bacteria1423Open in IMG/M
3300021361|Ga0213872_10087261All Organisms → cellular organisms → Bacteria1398Open in IMG/M
3300021388|Ga0213875_10482158All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300022504|Ga0242642_1004440All Organisms → cellular organisms → Bacteria1535Open in IMG/M
3300025885|Ga0207653_10118766All Organisms → cellular organisms → Bacteria950Open in IMG/M
3300025910|Ga0207684_11485640All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300025922|Ga0207646_11367113All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300025940|Ga0207691_10738166All Organisms → cellular organisms → Bacteria829Open in IMG/M
3300026075|Ga0207708_10858944All Organisms → cellular organisms → Bacteria → Acidobacteria784Open in IMG/M
3300026089|Ga0207648_11189299All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales716Open in IMG/M
3300026095|Ga0207676_11705528All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium628Open in IMG/M
3300026314|Ga0209268_1049030All Organisms → cellular organisms → Bacteria1352Open in IMG/M
3300026327|Ga0209266_1253357All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300026328|Ga0209802_1273458All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300026446|Ga0257178_1018571All Organisms → cellular organisms → Bacteria818Open in IMG/M
3300026524|Ga0209690_1119552All Organisms → cellular organisms → Bacteria1040Open in IMG/M
3300026529|Ga0209806_1041679All Organisms → cellular organisms → Bacteria → Proteobacteria2212Open in IMG/M
3300027651|Ga0209217_1120450All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300027882|Ga0209590_10808225All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300027903|Ga0209488_10420316All Organisms → cellular organisms → Bacteria987Open in IMG/M
3300027909|Ga0209382_10144328All Organisms → cellular organisms → Bacteria2762Open in IMG/M
3300027909|Ga0209382_12248960All Organisms → cellular organisms → Bacteria514Open in IMG/M
(restricted) 3300031197|Ga0255310_10087306All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300031538|Ga0310888_10029332All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2408Open in IMG/M
3300031573|Ga0310915_10263886All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1213Open in IMG/M
3300031720|Ga0307469_11883308All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium579Open in IMG/M
3300031720|Ga0307469_12512543All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300031820|Ga0307473_10773220All Organisms → cellular organisms → Bacteria682Open in IMG/M
3300031820|Ga0307473_11498313All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300031912|Ga0306921_10774810All Organisms → cellular organisms → Bacteria1097Open in IMG/M
3300032001|Ga0306922_12013839All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300032205|Ga0307472_102451217All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300032261|Ga0306920_102493329All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300034090|Ga0326723_0321762All Organisms → cellular organisms → Bacteria696Open in IMG/M
3300034661|Ga0314782_063875All Organisms → cellular organisms → Bacteria764Open in IMG/M
3300034678|Ga0314803_101115All Organisms → cellular organisms → Bacteria566Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil15.83%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere11.51%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil10.07%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil7.91%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere7.91%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil7.19%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.32%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.60%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.16%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.16%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.44%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.44%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.44%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.44%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.72%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.72%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.72%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.72%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.72%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.72%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.72%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated0.72%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.72%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.72%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.72%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.72%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.72%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.72%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.72%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2032320006Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+EnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002886Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cmEnvironmentalOpen in IMG/M
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004267Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBioEnvironmentalOpen in IMG/M
3300004281Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBioEnvironmentalOpen in IMG/M
3300004801Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005875Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006579Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010109Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017944Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019248Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021151Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021361Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2Host-AssociatedOpen in IMG/M
3300021388Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8Host-AssociatedOpen in IMG/M
3300022504Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026327Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026446Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-BEnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300032000Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300034090Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00NEnvironmentalOpen in IMG/M
3300034661Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034678Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
FACEORE_24103202032320006SoilMSSVSVADVGRPALRWHTLSRSLRGGLKGGEYTWAVAFVVPYLAVFLTFVAYPVIYGL
JGI1027J12803_10732266023300000955SoilMDNASVVAVGRPAVRRRTLSRYLRGNLKGGEYTWALAFVVPYAA
JGI10216J12902_10095887713300000956SoilMDTASVVEIGRPSVRRDSVWRSLRGPLKGSEYTWALAFVVPYVAVFLTFVAYPVA
JGI25612J43240_108218213300002886Grasslands SoilMDSASVVDVGRPAVRRGTLARSLRGGLKGGEYTWAVAFVVPYIAVF
JGI25382J43887_1009960113300002908Grasslands SoilMNGTSVIDVGRPAIRRRTLSRSLRGGLKGGEYTWAVAFVVPYIAVFLTF
Ga0062589_10144519823300004156SoilMMDSASVVDVRRPSVRWHALSRSLRGGLKGGEYTWAVAFV
Ga0066396_1012120413300004267Tropical Forest SoilMNGVSVAEVDRSSVRWRALSRSLRGGLKGAEYTWSLAFVVPYLAVFVTF
Ga0066397_1015275313300004281Tropical Forest SoilMNGASAIDIGRPAVRRRTLARSLRGPLKGGEYTWALAFVVPYIAVF
Ga0058860_1138227413300004801Host-AssociatedMTDSASVVDVGRPAVRRGTLSRSLRGGLKGGEYTWAVAFVVPYVAVFAAFV
Ga0066679_1094749223300005176SoilMDTASVVEIGRPSVRRETVWRSLRGPLKGTEYTWALAFVVPYVAVFLTFVAYPVVYGL
Ga0065707_1019804213300005295Switchgrass RhizosphereMMNGTSVLDLGRPAVRRQAWSRYLRGGLKGGEYTWALAFLVPYVAVFLTF
Ga0066388_10200991713300005332Tropical Forest SoilMNSASVADISSPAIRRRTLSRSLRGNLKGGEYTWALAFVVPYLAVF
Ga0066388_10480141813300005332Tropical Forest SoilMMDSASVVDIGRPALRWRTLSRSLRGGLKGGEYTWAVAFLVPYIAVFVA
Ga0070705_10141615513300005440Corn, Switchgrass And Miscanthus RhizosphereMDSASVVDVSRLAIRRRTLARSLRGGLKGGEYAWAVAFVVP
Ga0070706_10020225413300005467Corn, Switchgrass And Miscanthus RhizosphereMNGASVVDVGRPAIRQRTLLRSLRGGLKGGEYTWALAFVVPYIAVFVTFVAYPVVYG
Ga0070706_10020884513300005467Corn, Switchgrass And Miscanthus RhizosphereMNGTSAVEVSRPALRRRALSRSLRGSLKGGEYTWAVAFVVPYVAVFIT
Ga0070706_10164910613300005467Corn, Switchgrass And Miscanthus RhizosphereMNGTSAVDLSRPALRRRALSRSLRGSLKGGEYTWAVAFVVPYVAVFIT
Ga0070707_10032047713300005468Corn, Switchgrass And Miscanthus RhizosphereMNGTSAVDLSRPALRRRALSRSLRGSLKGGEYTWAVAFVVPYV
Ga0070699_10116969813300005518Corn, Switchgrass And Miscanthus RhizosphereMDSASAVDIGRPAIRRQTLTRYLRGGLKGGEYTWAVAFVV
Ga0070697_10037085323300005536Corn, Switchgrass And Miscanthus RhizosphereMMDNASVVDVDRLALRRRTLSLSLRGGLKGGEYAWALAFVVPY
Ga0070697_10209245913300005536Corn, Switchgrass And Miscanthus RhizosphereMASTSALDIGRPSVRRQALSRYFRGNLKGGEYTWAAAFLVPYVAV
Ga0070697_10209368813300005536Corn, Switchgrass And Miscanthus RhizosphereMNGTSAVDVSRPALRRRALSRSLRGSLKGGEYTWAVAFVVP
Ga0070693_10040504313300005547Corn, Switchgrass And Miscanthus RhizosphereMADSASVVNVPRPAVRFEALSRSLRGGLKGGEYTWAIAFV
Ga0066698_1058481313300005558SoilMDSTSVVDVGRPAVRRGTLSQFLRGSLKGAEYTWAVAFVVPYI
Ga0066691_1014660613300005586SoilMNGTSVIDVGRPASRRRTLSRSLRGGLKGGEYTWAVAFV
Ga0066706_1057578313300005598SoilMNGTSVLDIERPSIRRHALARYFRGNLKGGEYTWALAFLVPYVAVF
Ga0066905_10166312223300005713Tropical Forest SoilMIDSASVLDLGRPAVRWRSFVRSLRGSLKGGEYTWAVAFVVPYA
Ga0066903_10787528423300005764Tropical Forest SoilMMNSASVADISRPAIQRRTLSRSLRGNLKGGEYTWALAFVVPYLAVFITFVAYP
Ga0068863_10173139113300005841Switchgrass RhizosphereMNGTSAVDVSRFALRRRALSRSFRGGLKGGEYTWAVAFVVPYVA
Ga0075293_100619413300005875Rice Paddy SoilMDSASVAISRPAPWRDSLSRSLRGGLKGGEYTWAVAFVVPYLA
Ga0070716_10094605523300006173Corn, Switchgrass And Miscanthus RhizosphereMNSVSVADIGRPALRWHTLSRSLRGGLKGGEYTWAVAFV
Ga0074054_1146217813300006579SoilMMNSASVADIDRPAVRRATLSRSLRGGLKGGEYTWALAFVVPYL
Ga0066665_1064462623300006796SoilMATTSVLDLGRPSIRRQTWSRYFRGNLKGGEYTWAIAFLVPYVAVFVTFVVYP
Ga0066665_1074530313300006796SoilMDSASVIDAVRPAVRRRTLPRALRGNLKGGEYTWAVAFVIPYIAV
Ga0066659_1106927813300006797SoilMNGTSVLDVARPALRGQTLLRHFRGHLKGGEYTWALAFLVPYVAVFLTFVVY
Ga0079220_1067043513300006806Agricultural SoilMDSTSVVDIRRPAVRRTTLSRHLRGGLKGGEYAWAVAF
Ga0075425_10091169523300006854Populus RhizosphereMNGASVVDIARPAIRRRTLARSLRGTLKGGEYTWAL
Ga0075425_10234650623300006854Populus RhizosphereMSSSVIDISRPAIRRRTLARSLRGTLKGGEYTWAVAFVVPYIAVFL
Ga0075424_10168449623300006904Populus RhizosphereMDNVSVVEVGRPAVRRRTLSRYLSGHLKGGEYTWAV
Ga0075436_10060371413300006914Populus RhizosphereMNGTSVIDVGRPAIRRRTLSRSLRGGLKGGEYTWA
Ga0075436_10077201123300006914Populus RhizosphereMNGTSALDIARPAVRRRDWSRYFRGNLKGGEYTWAVAFLVPYVAVFLTFVV
Ga0079219_1033644623300006954Agricultural SoilMNSVSVADIGRPALRWHTLSRSLRGGLKGGEYTWAVAF
Ga0075435_10026750013300007076Populus RhizosphereMNGTSVIDVARPAVRRRTLSRSLRGGLKGGEYTWAV
Ga0066710_10102542313300009012Grasslands SoilMDSASVADVARPAIRWRTLSRSLRGGLKGGEYAWAVAFV
Ga0099827_1123107223300009090Vadose Zone SoilMDSASVVDIGRSAIRRQTLSRYLHGSLKGGEYTWAVAFVVPYVAVFLIFVAYPVVY
Ga0111539_1134137113300009094Populus RhizosphereMNGTSVIDVARPAVRRRTLSRSLRGGLKGGEYTWALAFVVPYIAV
Ga0114129_1169171623300009147Populus RhizosphereMDTASVVAVGRPAVRRRALARYLHGNLKGGEYTWAVAFLVP
Ga0075423_1219560513300009162Populus RhizosphereMNGTSAVEVSRFALRRRALSRSLRGSLKGGEYTWAVAFVVPYVAVFITFVAYPV
Ga0126374_1024322913300009792Tropical Forest SoilMMDSASAVAIGRPGLQWRTLSRSLRGGLKGGEYTWAVA
Ga0126380_1212560323300010043Tropical Forest SoilMIDSASVVDVGRPAVARRTLARSLRGGLKGGEYTWAIAFVVPYIAVFLTFVAYP
Ga0126384_1239286613300010046Tropical Forest SoilMDTASVVAVGRPAVRRRALARYLRGNLKGGEYTWAVAFLVPYVAV
Ga0126382_1175586523300010047Tropical Forest SoilMDTASVVAVGHPAVRRRVLARYLHGHLKGGEYAWA
Ga0127497_111190613300010109Grasslands SoilMNGTSVIDVGRPALRRRALSRSLRGGLKGGEYTWAVAFVVPYIA
Ga0134082_1007263313300010303Grasslands SoilMNGTSVIDVGRRPAIRRRTLSRSLRGGLKGGEYTWA
Ga0134086_1005162623300010323Grasslands SoilMNGTSVIDVGRRPAIRRRTLSRSLRGGLKGGEYTWAVAFVVPYIAVFLTFVA
Ga0134080_1017330613300010333Grasslands SoilMMDTASVVEIGRPSVRRDSIWRSLRGPLKGSEYTWALAFVVPYIA
Ga0134080_1036214313300010333Grasslands SoilMMDSASVVDVGRPAIRRRTLSRSLRGGLKGGEYTWAVAFVVPYIAVFLAF
Ga0134071_1011813823300010336Grasslands SoilMNGTSVIDVGRPALRRGALSRSLRGGLKGGEYTWAVAFVVPYIAVFL
Ga0134062_1001587913300010337Grasslands SoilMMDTASVVEIGRPSVRRDSIWRSLRGPLKGSEYTWALAFVVPYIAVFVT
Ga0126376_1104157723300010359Tropical Forest SoilMASVSIAEVSRPALWRHTLSRSLRGSLKGGEYTWAVAFVVPYVAVFITFVA
Ga0126378_1125324813300010361Tropical Forest SoilMNGASVAALDRAGVRWRALSRSLRGGLKGAEYTWSLAFVVPYLAVF
Ga0126378_1347074313300010361Tropical Forest SoilMMDSASAVAIGRPGLQWRTLSRSLRGGLKGGEYTWA
Ga0126379_1355464923300010366Tropical Forest SoilMDTASVVAVGRPAVRRQALGLYLRGNLKGGEYTWAVAFLVP
Ga0126381_10326792723300010376Tropical Forest SoilMDSASAIDLSRPTARGLSRSLRGGLKGGEYTWALAFVVPYI
Ga0134127_1285628123300010399Terrestrial SoilMSTSIVNVSRPAVQRRTFARSLRGGLKGGEYTWAL
Ga0134121_1293913923300010401Terrestrial SoilMNSVSAVDVARPGLQRRTLSRSLRGSLKGDEYTWALAFVVPYLVVFVTFVA
Ga0137392_1119385513300011269Vadose Zone SoilMMDSASVIDVSRPAVRRRTLSRALRGNLKGGEYTWAVAFVVPYIAVFATF
Ga0137391_1143451113300011270Vadose Zone SoilMDSASVVDIGRPASRGQALSRSLRGGLKGGEYTWAVAFVVPYIAVFVA
Ga0137393_1071281923300011271Vadose Zone SoilMMASTSVLDIGRPSIRRQTWSRYFRGNLKGGEYTWAVAFLVPYVAVFLTFVVYPIV
Ga0137364_1026068923300012198Vadose Zone SoilMNGTAAVEVSRFALRRRALSRSFRGGLKGGEYTWAVAFV
Ga0137381_1026336213300012207Vadose Zone SoilMDSTSVVDVGRPAVRRGTLSQFLRGSLKGAEYTWAVAFVVPYIAVFVTF
Ga0137381_1148465013300012207Vadose Zone SoilMDSASVVEIGRPAVRRQTLWRYFRGDLKTTEYTWAVAF
Ga0137377_1110694913300012211Vadose Zone SoilMNGTSVIDVGRPAIRRRTLSRSLRGGLKGGEYTWAS
Ga0137372_1019961013300012350Vadose Zone SoilMMDGTSVVDVGRPAIRRRTLSLSRSLRGGLKGGEYTWAVA
Ga0137372_1040071323300012350Vadose Zone SoilMDSASVVDIGRPASRRRTLSRSLRGGLKGGEYTWAVAFVVP
Ga0137369_1049428913300012355Vadose Zone SoilMNGTSAIDVSRPAIRRRTLSRSLRGGLKGGEYTWAVAFVVPYIAVFLTFVA
Ga0137360_1051223623300012361Vadose Zone SoilMDSASVIDVGRPATRRRTLSRSLRGGLKGGEYTWAVAFVVPYVAVFVTFVAYP
Ga0137358_1003230743300012582Vadose Zone SoilMNGTSVIDVSRPAIRRRTLSRSLRGGLKGGEYTWAVAFVVPYI
Ga0137397_1130951523300012685Vadose Zone SoilMNGTSVIDAGRPALRRRALSRSLRGGLKGGEYTWAVAFVVPYIAVFLT
Ga0157301_1031339113300012911SoilMMNSASVADLGRPAVRRGTLSRSLRGGLKGGEYTWALAFVVPYLAVFV
Ga0137396_1064654423300012918Vadose Zone SoilMNGTSAVEVSRFALRRRALSRSFRGGLKGGEYTWAVAFVVPYVAV
Ga0137394_1152698413300012922Vadose Zone SoilMNGTSVIDVSRPAIRRRTFSRSLRGGLKGGEYTWAVAFVVPYIAVFLTFVAYPVVYGLWM
Ga0137359_1087043113300012923Vadose Zone SoilMDSTSVVDVGRPAVRRGTLSQFLRGSLKGAEYTWAVA
Ga0137419_1016890313300012925Vadose Zone SoilMNGASVVGVGRLAIRKRTLSRSLRGGLKGGEYTWAVAFVVPYIAVFLTFVAYPVVYGLWMGSEASL
Ga0137407_1052823413300012930Vadose Zone SoilMNGTSVIDAGRPALRRRTLSRSLRGGLKGGEYTWAVAFVVPYIAVFLTFV
Ga0126369_1354228223300012971Tropical Forest SoilMNGVSVAEVDRPGVRWRALSRSLRGGLKGAEYTWSLAFVVPYLAVFVTFVA
Ga0134077_1023560713300012972Grasslands SoilMTDTASVVEISRPAIRRRTLARYFRGSLKGGEYTWAVAFVVPYVAVFLTFVAYPVVYGL
Ga0157375_1139384323300013308Miscanthus RhizosphereMNGTSVIDVGRPAVRRRTLSRSLRGGLKGGEYTWAVAFVVPYVAVFLTFV
Ga0157380_1105033813300014326Switchgrass RhizosphereMNGTSVIDVGRPAVRRRTLSRSLRGGLKGGEYTWAVAFVVPY
Ga0132255_10256260813300015374Arabidopsis RhizosphereMIDSASVVDVRRPALRWHALSRSLRGGLKGGEYTWAVAFIVPYLAVFVTFVAYPVIYGL
Ga0182034_1096284413300016371SoilMMDSASVVDVGRPALRWRTLSRSLRGGLKGGEYTWAVAFLVPYIAVFVA
Ga0134112_1000106673300017656Grasslands SoilMNGTSVIDVGRPALRRRALSRSLRGGLKGGEYTWAVAFVVPYIAVFLTFVAYPVVYGLWM
Ga0134074_114272723300017657Grasslands SoilMNGTSAVDVSRFALRRRALSRSFRGGLKGGEYTWAVAFVVPY
Ga0134083_1000113413300017659Grasslands SoilMNGTSVIDVGRPALRRRALSRSLRGGLKGGEYTWAVAFVVPYIAVFLTFVAYPVV
Ga0187786_1055825513300017944Tropical PeatlandMDSASAVAIGRPGLQWRTLSRSLRGGLKGREYTWAVAFVIP
Ga0187780_1084623113300017973Tropical PeatlandMAGASVAEVSRPLLWRHTLSRSLRGSLKGGEYTWAIAFVVPYLAVFLTF
Ga0187822_1016210423300017994Freshwater SedimentMNGVSVAGIERPGLRWQMLSRSLRGGLKGGEYIWAVAFVMPYLAVFVTFVAY
Ga0187774_1026422413300018089Tropical PeatlandMNGVSVAHVGRPALRWHTLSRSLRGGLKGGEYIWAVAFVVP
Ga0066667_1154756123300018433Grasslands SoilMATSVLDIGRPSIRRQALLRYFRGNLKGGEYTWAVAF
Ga0066669_1186280013300018482Grasslands SoilMNGTSAVDVSRPALRRRALSRSLRGSLKGGEYTWAVAFVVPYVAVFIAFV
Ga0180117_112844113300019248Groundwater SedimentMDSASVVDIGRPPIRRGTLSRSLRGGLKGGEYTWALAFVVPYLAVFVAF
Ga0179584_141437023300021151Vadose Zone SoilMDSTSVIDVGRPAIRRRTLSRSLRGGLKGGEYTWAVAFVVPYIAVFLT
Ga0213872_1008726113300021361RhizosphereMSGLSAVGISRPAIVRPARSRYWRGSLKGSEYTWAVAFV
Ga0213875_1048215813300021388Plant RootsMTTASFVEVGRPAAVRRPFLSQLRGHLKGSEYTWAVAFIVPYAAVFLT
Ga0242642_100444013300022504SoilMNSVSVADVGRPAIRWHTLSRSLRGGLKGGEYTWAVAFVVPYLAVFLTFVAYPVV
Ga0207653_1011876623300025885Corn, Switchgrass And Miscanthus RhizosphereMMDGASVVDVGRPAIRRGTLSRSLRGGLKGGESTW
Ga0207653_1040532813300025885Corn, Switchgrass And Miscanthus RhizosphereMNGASVLDIDRPAIRRRTLARSLRGTLKGGEYTWAVAFVVPYIAVFLTFVAYPVVYGLWMGS
Ga0207684_1148564013300025910Corn, Switchgrass And Miscanthus RhizosphereMDSASVVDIRRPAVRWGTLSRSLRGGLKGGEYTWALAFVVTYIAVFVTFVAYP
Ga0207646_1136711313300025922Corn, Switchgrass And Miscanthus RhizosphereMDSASVVDIARPALRRRTLSRVLRGSLKGGEYTWAVA
Ga0207691_1073816623300025940Miscanthus RhizosphereMTDSASVVDVGRPAVRRGTLSRSLRGGLKGGEYTWAVAFVVPYVA
Ga0207708_1085894433300026075Corn, Switchgrass And Miscanthus RhizosphereMADSASVVNVPRPAVRFEALSRSLRGGLKGGEYTWAIA
Ga0207648_1118929923300026089Miscanthus RhizosphereMMDSASVVDVRRPSVRWHALSRSLRGGLKGGEYTWAVAFVVPYLAVFVTFVAYPVIYGLWMGSEA
Ga0207676_1170552813300026095Switchgrass RhizosphereMNSASVVDIGRPAGRRGTLSRSLRGGLKGGEYTWALAFVVPYLAVFVAFV
Ga0209268_104903023300026314SoilMMDRASVDRASVVDVARPAIWRRTLSRSLRGNLHGGEYAWAVAFVVPY
Ga0209266_125335723300026327SoilMSGTSVIDVSRPAIRRRTLSRSLRGGLKGGEYTWAVAFVVPYIAVFLTFVAYPVVYGLW
Ga0209802_127345823300026328SoilMMDNASVVDVGRPAIRWRAVSRSLRGGLKGGEYPWAVAFVLPYIAVFLVFVAYPVVYGLW
Ga0257178_101857123300026446SoilMDGASVVDVGRPAIRRGTLSRSLRGGLKGGEYTWAVAFVVPYV
Ga0209690_111955213300026524SoilMNGTSVIDVGRPAIRRRTLSRSLRGGLKGGEYTWAV
Ga0209806_104167933300026529SoilMDSTSVVDVGRPAVRRGTLSQFLRGSLKGAEYTWAVAFVVPY
Ga0209217_112045013300027651Forest SoilMNSVSVADVGRPAIRWHTLSRSLRGGLKGGEYTWAVAFVVPYLAVFLTF
Ga0209590_1080822513300027882Vadose Zone SoilMMDTTSVAGIGRPAVRRGTLSQFLRGSLKGGEYTWAVAFVVPYLAVFVAFVA
Ga0209488_1042031623300027903Vadose Zone SoilMNGASVVDVGRPVIRRHTLSRSLRGGLKGGEYTWAVA
Ga0209382_1014432813300027909Populus RhizosphereMDTASVVAVGRPAIRRRALARYLHGNLKGGEYTWAVAFLVP
Ga0209382_1224896013300027909Populus RhizosphereMDNVSVVEVGRPAVRRRTLSRYLSGHLKGGEYTWAVAFLVPYVAVFLTFV
(restricted) Ga0255310_1008730623300031197Sandy SoilMDSASVVDLHRPTVGRGTFLRSLRGGLKGGEYTWALAFVVPYIAVFL
Ga0310888_1002933233300031538SoilMNGASFVDIGRPAIRRRTLARSLRGTLKGGEYTWAVAFV
Ga0310915_1026388613300031573SoilMMDSASVVDVGRPALRWRTLSRSLRGGLKGGEYTWAVAFLVPYIAVFVAFVVYP
Ga0307469_1188330813300031720Hardwood Forest SoilMDSASVLDVSRPVVRRRTLSRFLRGGLKGGEYTWAVAFVVPYIAVFAT
Ga0307469_1251254313300031720Hardwood Forest SoilMDSASVIDVTRPAVRWRTLSRSLRGGLKGGEYRWAVAFVVPYIAVFITFV
Ga0307473_1077322013300031820Hardwood Forest SoilMNSATVADVGRPAVRWRTISRSLRGGLKGGEYTWAVAFV
Ga0307473_1149831323300031820Hardwood Forest SoilMMDTASVIEIGHSAVRRQAVWRYLRGNLKSGEYAWAAAFVVPYVAVFL
Ga0306921_1077481013300031912SoilMSSSIVDISRPAIQRRTFARSLRGGLKGGEYTWALAFVVPYIAVFV
Ga0310903_1039646013300032000SoilMNGASFVDIGRPAIRRRTLARSLRGTLKGGEYTWAVAFVVPYLAVFVTFVAYPVVYGLWMGSD
Ga0306922_1201383913300032001SoilMSSSIVEISRPAIQRRTFARSLRGSLKGGEYTWALA
Ga0307472_10245121713300032205Hardwood Forest SoilMGSASVIDAVRPAERRRTLARSLRGGLKGGEYACAVAFVVPYIAVFVTFVAYPVVYWLW
Ga0306920_10249332913300032261SoilMNGASVAEVDRQGVRGHALSRSLRGSLKGAEYTWAVAFVVPYLAVFVTFV
Ga0326723_0321762_1_1053300034090Peat SoilMDSASVVDVGRPALRWHALSRSLRGGLKGGEYTWA
Ga0314782_063875_3_1373300034661SoilMNGASFVDIDRPAIRRRTLARSLRGTLKGGEYTWAVAFVVPYIAV
Ga0314803_101115_424_5643300034678SoilMNGASFVDIGRPAIRRRTLARSLRGTLKGGEYTWAVAFVVPYIAVFI

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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