Metagenome / Metatranscriptome Family F054729

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054729
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	75 residues
Representative Sequence	MSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGASQECNGAKRLCRDSPPLLDWRHYCN
Number of Associated Samples	94
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.50 %
% of genes near scaffold ends (potentially truncated)	25.90 %
% of genes from short scaffolds (< 2000 bps)	81.29 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.561 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (16.547 % of family members)
Environment Ontology (ENVO)	Unclassified (30.935 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.482 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 45.63% β-sheet: 1.94% Coil/Unstructured: 52.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF01717	Meth_synt_2	6.47
PF08402	TOBE_2	5.76
PF00080	Sod_Cu	5.04
PF00496	SBP_bac_5	4.32
PF03706	LPG_synthase_TM	4.32
PF02738	MoCoBD_1	3.60
PF01895	PhoU	2.88
PF00206	Lyase_1	2.16
PF03992	ABM	2.16
PF13511	DUF4124	2.16
PF10397	ADSL_C	2.16
PF13474	SnoaL_3	1.44
PF00005	ABC_tran	1.44
PF04392	ABC_sub_bind	0.72
PF16576	HlyD_D23	0.72
PF14060	DUF4252	0.72
PF13701	DDE_Tnp_1_4	0.72
PF02668	TauD	0.72
PF01850	PIN	0.72
PF00528	BPD_transp_1	0.72
PF13522	GATase_6	0.72
PF09821	AAA_assoc_C	0.72
PF13641	Glyco_tranf_2_3	0.72
PF01914	MarC	0.72
PF01259	SAICAR_synt	0.72
PF08734	GYD	0.72
PF13378	MR_MLE_C	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	6.47
COG2032	Cu/Zn superoxide dismutase	Inorganic ion transport and metabolism [P]	5.04
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	4.32
COG0152	Phosphoribosylaminoimidazole-succinocarboxamide synthase	Nucleotide transport and metabolism [F]	0.72
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.72
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.72
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.72
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.56 %
Unclassified	root	N/A	1.44 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.56 %
Unclassified	root	N/A	1.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.56 %
Unclassified	root	N/A	1.44 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	56.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.55 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.44 %
Unclassified	root	N/A	1.44 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	56.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12.23 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.44 %
Unclassified	root	N/A	1.44 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	56.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.47 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.60 %
Unclassified	root	N/A	1.44 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	6.47 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	2.88 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.44 %
Unclassified	root	N/A	1.44 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	6.47 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2.88 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.44 %
Unclassified	root	N/A	1.44 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
unclassified Reyranella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella	6.47 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2.88 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.44 %
Unclassified	root	N/A	1.44 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Reyranella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	6.47 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2.88 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.44 %
Unclassified	root	N/A	1.44 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002560\|JGI25383J37093_10017615	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2381	Open in IMG/M
3300002908\|JGI25382J43887_10001927	All Organisms → cellular organisms → Bacteria	8814	Open in IMG/M
3300002908\|JGI25382J43887_10138999	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1246	Open in IMG/M
3300002912\|JGI25386J43895_10099548	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	746	Open in IMG/M
3300003319\|soilL2_10277033	All Organisms → cellular organisms → Bacteria	1774	Open in IMG/M
3300005171\|Ga0066677_10237949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	1030	Open in IMG/M
3300005172\|Ga0066683_10186541	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1279	Open in IMG/M
3300005172\|Ga0066683_10535803	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	714	Open in IMG/M
3300005172\|Ga0066683_10661736	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	624	Open in IMG/M
3300005175\|Ga0066673_10721728	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300005176\|Ga0066679_10255426	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1130	Open in IMG/M
3300005181\|Ga0066678_11141704	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	500	Open in IMG/M
3300005332\|Ga0066388_100249109	All Organisms → cellular organisms → Bacteria	2415	Open in IMG/M
3300005332\|Ga0066388_107042314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	566	Open in IMG/M
3300005406\|Ga0070703_10216343	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	760	Open in IMG/M
3300005445\|Ga0070708_100022710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	5325	Open in IMG/M
3300005445\|Ga0070708_100170165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	2033	Open in IMG/M
3300005445\|Ga0070708_100622400	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300005450\|Ga0066682_10588309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	700	Open in IMG/M
3300005467\|Ga0070706_100023254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	5709	Open in IMG/M
3300005467\|Ga0070706_100107106	All Organisms → cellular organisms → Bacteria	2600	Open in IMG/M
3300005467\|Ga0070706_100823432	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	859	Open in IMG/M
3300005468\|Ga0070707_100020006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	6310	Open in IMG/M
3300005468\|Ga0070707_100365770	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1401	Open in IMG/M
3300005471\|Ga0070698_101692751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	585	Open in IMG/M
3300005518\|Ga0070699_100059165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3320	Open in IMG/M
3300005518\|Ga0070699_100120699	All Organisms → cellular organisms → Bacteria	2305	Open in IMG/M
3300005518\|Ga0070699_100258784	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300005536\|Ga0070697_100508262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	1054	Open in IMG/M
3300005536\|Ga0070697_101750333	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	556	Open in IMG/M
3300005536\|Ga0070697_101754891	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	555	Open in IMG/M
3300005549\|Ga0070704_101490263	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300005552\|Ga0066701_10024245	All Organisms → cellular organisms → Bacteria	3065	Open in IMG/M
3300005553\|Ga0066695_10396881	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	856	Open in IMG/M
3300005553\|Ga0066695_10756003	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	564	Open in IMG/M
3300005556\|Ga0066707_10145429	All Organisms → cellular organisms → Bacteria	1499	Open in IMG/M
3300005556\|Ga0066707_10749130	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	608	Open in IMG/M
3300005713\|Ga0066905_100053084	All Organisms → cellular organisms → Bacteria	2496	Open in IMG/M
3300005764\|Ga0066903_100717513	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1767	Open in IMG/M
3300005764\|Ga0066903_100981844	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300005764\|Ga0066903_101180808	All Organisms → cellular organisms → Bacteria → Proteobacteria	1419	Open in IMG/M
3300006791\|Ga0066653_10769805	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	504	Open in IMG/M
3300006796\|Ga0066665_11456412	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	532	Open in IMG/M
3300006797\|Ga0066659_11884364	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	507	Open in IMG/M
3300006852\|Ga0075433_10359578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	1286	Open in IMG/M
3300006852\|Ga0075433_11311066	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	627	Open in IMG/M
3300006854\|Ga0075425_100287499	All Organisms → cellular organisms → Bacteria	1892	Open in IMG/M
3300006871\|Ga0075434_101942243	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	594	Open in IMG/M
3300007004\|Ga0079218_12899409	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	576	Open in IMG/M
3300007076\|Ga0075435_100373622	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1224	Open in IMG/M
3300009012\|Ga0066710_101931972	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	881	Open in IMG/M
3300009089\|Ga0099828_10193573	All Organisms → cellular organisms → Bacteria → Proteobacteria	1813	Open in IMG/M
3300009089\|Ga0099828_10297710	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300009089\|Ga0099828_11159406	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	686	Open in IMG/M
3300009089\|Ga0099828_11249154	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	658	Open in IMG/M
3300009090\|Ga0099827_11778561	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	537	Open in IMG/M
3300009090\|Ga0099827_12022589	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	500	Open in IMG/M
3300009094\|Ga0111539_10722711	Not Available	1159	Open in IMG/M
3300009137\|Ga0066709_101430603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	1003	Open in IMG/M
3300010046\|Ga0126384_10081422	All Organisms → cellular organisms → Bacteria	2334	Open in IMG/M
3300010046\|Ga0126384_10947092	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	781	Open in IMG/M
3300010047\|Ga0126382_11549586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	612	Open in IMG/M
3300010301\|Ga0134070_10040823	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1551	Open in IMG/M
3300010303\|Ga0134082_10128099	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300010323\|Ga0134086_10268163	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	654	Open in IMG/M
3300010336\|Ga0134071_10195356	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	997	Open in IMG/M
3300010336\|Ga0134071_10805447	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	503	Open in IMG/M
3300010359\|Ga0126376_10763219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	939	Open in IMG/M
3300010359\|Ga0126376_11941760	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	629	Open in IMG/M
3300010360\|Ga0126372_10235033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	1559	Open in IMG/M
3300010360\|Ga0126372_12288367	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300010360\|Ga0126372_12454495	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	572	Open in IMG/M
3300010362\|Ga0126377_10113267	All Organisms → cellular organisms → Bacteria	2494	Open in IMG/M
3300012081\|Ga0154003_1067808	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	611	Open in IMG/M
3300012096\|Ga0137389_10706241	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	866	Open in IMG/M
3300012096\|Ga0137389_11150645	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	665	Open in IMG/M
3300012174\|Ga0137338_1037173	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1004	Open in IMG/M
3300012189\|Ga0137388_10119255	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2295	Open in IMG/M
3300012198\|Ga0137364_10401346	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1026	Open in IMG/M
3300012202\|Ga0137363_11454414	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	576	Open in IMG/M
3300012204\|Ga0137374_10007720	All Organisms → cellular organisms → Bacteria	12772	Open in IMG/M
3300012206\|Ga0137380_10309301	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1414	Open in IMG/M
3300012209\|Ga0137379_10435273	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1220	Open in IMG/M
3300012361\|Ga0137360_11680243	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	540	Open in IMG/M
3300012362\|Ga0137361_10261683	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300012396\|Ga0134057_1197963	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	563	Open in IMG/M
3300012685\|Ga0137397_11060633	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	593	Open in IMG/M
3300012922\|Ga0137394_10945500	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	718	Open in IMG/M
3300012925\|Ga0137419_11381539	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	594	Open in IMG/M
3300012948\|Ga0126375_10077669	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1888	Open in IMG/M
3300012971\|Ga0126369_10808678	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1020	Open in IMG/M
3300012976\|Ga0134076_10015324	All Organisms → cellular organisms → Bacteria	2666	Open in IMG/M
3300012976\|Ga0134076_10070400	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1351	Open in IMG/M
3300014154\|Ga0134075_10087165	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1313	Open in IMG/M
3300014883\|Ga0180086_1009092	All Organisms → cellular organisms → Bacteria → Proteobacteria	2069	Open in IMG/M
3300014883\|Ga0180086_1039673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1110	Open in IMG/M
3300015241\|Ga0137418_10463307	All Organisms → cellular organisms → Bacteria → Acidobacteria	1021	Open in IMG/M
3300017656\|Ga0134112_10037533	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1726	Open in IMG/M
3300017657\|Ga0134074_1038986	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1597	Open in IMG/M
3300018431\|Ga0066655_10009524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4148	Open in IMG/M
3300018431\|Ga0066655_10171212	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1313	Open in IMG/M
3300018433\|Ga0066667_10609485	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	911	Open in IMG/M
3300018468\|Ga0066662_11336363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	737	Open in IMG/M
3300018468\|Ga0066662_11383560	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	727	Open in IMG/M
3300019883\|Ga0193725_1000235	All Organisms → cellular organisms → Bacteria	17498	Open in IMG/M
3300019883\|Ga0193725_1063257	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300025910\|Ga0207684_10015154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6638	Open in IMG/M
3300025910\|Ga0207684_10080354	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2774	Open in IMG/M
3300025910\|Ga0207684_10121947	All Organisms → cellular organisms → Bacteria	2235	Open in IMG/M
3300025910\|Ga0207684_10994583	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	702	Open in IMG/M
3300025922\|Ga0207646_10035905	All Organisms → cellular organisms → Bacteria	4475	Open in IMG/M
3300025922\|Ga0207646_10677895	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	923	Open in IMG/M
3300026277\|Ga0209350_1032964	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1542	Open in IMG/M
3300026285\|Ga0209438_1146312	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	624	Open in IMG/M
3300026301\|Ga0209238_1203797	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	580	Open in IMG/M
3300026306\|Ga0209468_1056661	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1322	Open in IMG/M
3300026314\|Ga0209268_1091631	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	857	Open in IMG/M
3300026324\|Ga0209470_1007651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6727	Open in IMG/M
3300026334\|Ga0209377_1110576	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1122	Open in IMG/M
3300027654\|Ga0209799_1117921	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	604	Open in IMG/M
3300027875\|Ga0209283_10126128	All Organisms → cellular organisms → Bacteria → Proteobacteria	1689	Open in IMG/M
3300027875\|Ga0209283_10817521	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	571	Open in IMG/M
3300027882\|Ga0209590_10534919	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	756	Open in IMG/M
3300027886\|Ga0209486_11082947	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	543	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1108041	Not Available	605	Open in IMG/M
3300031720\|Ga0307469_12183125	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	539	Open in IMG/M
3300031720\|Ga0307469_12258598	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	530	Open in IMG/M
3300031740\|Ga0307468_100664081	All Organisms → cellular organisms → Bacteria → Proteobacteria	864	Open in IMG/M
3300031765\|Ga0318554_10693975	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	571	Open in IMG/M
3300031820\|Ga0307473_10022162	All Organisms → cellular organisms → Bacteria	2614	Open in IMG/M
3300031820\|Ga0307473_10565197	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	779	Open in IMG/M
3300031820\|Ga0307473_10823450	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300032180\|Ga0307471_102065043	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	716	Open in IMG/M
3300032180\|Ga0307471_102752557	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300032180\|Ga0307471_103567005	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	551	Open in IMG/M
3300032205\|Ga0307472_100171177	All Organisms → cellular organisms → Bacteria	1615	Open in IMG/M
3300032205\|Ga0307472_100253138	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300032205\|Ga0307472_100785204	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	868	Open in IMG/M
3300033233\|Ga0334722_10351828	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.96%
Host-Associated	Host-Associated	5.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.09%
Plants	Host-Associated → Plants	4.32%
Aquatic	Environmental → Aquatic	2.88%
Fungi	Host-Associated → Fungi	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.32%
Sediment	Environmental → Aquatic → Sediment	2.16%
Freshwater	Environmental → Aquatic → Freshwater	0.72%
Mycelium	Host-Associated → Fungi → Mycelium	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.35%
Loam	Environmental → Terrestrial → Soil → Loam	23.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.16%
Lake	Environmental → Aquatic → Freshwater → Lake	0.72%
Sand	Environmental → Terrestrial → Soil → Sand	0.72%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	23.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.16%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.16%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.44%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.72%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.72%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	16.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.07%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.04%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.32%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.44%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.44%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.72%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.72%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.72%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012081	Attine ant fungus gardens microbial communities from Florida, USA - TSFL087 MetaG	Host-Associated	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012174	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT366_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25383J37093_100176153	3300002560	Grasslands Soil	MSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCD*
JGI25382J43887_100019273	3300002908	Grasslands Soil	MWRQNIVVALVLGSLIVALAVLVWHENERRYAALSMTGCFGDSASSPLGVSQECNGARRLCRDSPPLLDWRHYCD*
JGI25382J43887_101389991	3300002908	Grasslands Soil	MSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSAQSPLGASQECNGAKRLCRDSPPLLDWRHYC
JGI25386J43895_100995481	3300002912	Grasslands Soil	MSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDW
soilL2_102770333	3300003319	Sugarcane Root And Bulk Soil	LGARLAVVVVLGGLLLALAVLAWRENERRYGWFALTGCFGEGGVAVQDCTGARRLCRDAPPLIDWRSYCR*
Ga0066677_102379491	3300005171	Soil	RWLVVVVVVGTLVGSLVVLVWRENERRYAAFAMTGCFGDSATSALGGSQDCTGAKRLCRNAPPLLDWRHFCN*
Ga0066683_101865412	3300005172	Soil	VWRQRLVVIAIVGGLVLSLLVLVWRENERRYASFAMTGCFGDSASSPLGATQECTGARRLCRDSPPLIDWRHYCN*
Ga0066683_105358032	3300005172	Soil	MSRQGIVAAIVVGSLVVALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCD*
Ga0066683_106617362	3300005172	Soil	MSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN*
Ga0066673_107217282	3300005175	Soil	MSRQGIVAAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCD*
Ga0066679_102554262	3300005176	Soil	MSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSAQSPLGASQECNGAKRLCRDSPPLLDWRHYCD*
Ga0066678_111417041	3300005181	Soil	MWKERLVVVAVAGGLIFSLLFLVWRENERRYGWFAMTGCFGDSADSALGGSQNCTGARRLCRDAPPLIDWRRYCR*
Ga0066388_1002491093	3300005332	Tropical Forest Soil	MSRQGLVVIIVVGSLIASLAVLVWRENERRYATLSMTGCFGDSAQSPLGVSQECNGARRLCRDSPPLLDWRHYCN*
Ga0066388_1070423142	3300005332	Tropical Forest Soil	VVGSLVGTLVFLVWRENERRYAAFGMTGCFGDSATSALGASQDCTGARRLCRDVPPLIDWRRYCG*
Ga0070703_102163431	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VDGSRIVVAVVVGALVLSLLALVWRENERRYAAFAMTGCFEDSASSALGASQGCNGAKRLCRDAPPLLDWRRFCN*
Ga0070708_1000227102	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MIERVRWLVVVLVVGSLVGSLVVLVWRENERRYAAFGITGCFGDSATSALGVSQDCTGARRLCRDAPPLIDWRRFCS*
Ga0070708_1001701652	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MIQDVKGPDRARIVAAFVIGSLVLSLLVLVWRENERRYAAFAITGCFGDSASSALGTSQDCTGAKRLCRDAPPLLDWRRFCN*
Ga0070708_1006224002	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQRLVVVAVVGSLVVSLLFLVWRENERRYGWFAMTGCFGDSASSALGASQNCTGARRLCRDAPPLIDWRSYCR*
Ga0066682_105883092	3300005450	Soil	MSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGASQECNGAKRLCRDSPPLLDWRHYCD*
Ga0070706_1000232546	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MIQDVKGPDRARIVAAFVVGSLVLSLLVLVWRENERRYAAFAMTGCFGDSASSALGASQDCTGAKRLCRDAPPLLDWRRFCN*
Ga0070706_1001071062	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MGTKAYLPGVDIVEAMQRLVVVVVVGSLVLSLFILVWRENERRYAAFAMTGCFGDSASSPLGASQNCTGARRLCRDVPPLVDWRRYCG*
Ga0070706_1008234322	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MQRLVVVAVVGSLVFSLLFLVWRENERRYGWFAMTGCFGDSAASALGASQNCTGARRLCRDAPPLIDWRSYCR*
Ga0070707_1000200066	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VDGSRIVVVVVVGSLVLSLLALVWRENERRYAAFAMTGCFEDSASSALGTSQDCTGAKRLCRDAPPLLDWRRFCN*
Ga0070707_1003657701	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MQRLVVVAVVGSLVVSLLFLMWRENERRYGWFAMTGCFGDSASSALGASQNCTGARRLCRDAPPLIDWRSYCH*
Ga0070698_1016927512	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MIQDVKGPDRARIVAAFVVGSLVLSLLVLVWRENERRYAAFAMTGCFGDSASSALGASQDCTGAKRLCRDAPP
Ga0070699_1000591651	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VVLVVGSLVGSLVVLVWRENERRYAAFGMTGCFGDSATSALGVSQDCTGARRLCRDAPPLIDWRRFCS*
Ga0070699_1001206994	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VAVVVGTLALSLVLLVWRENERRYAAFAMTGCFGDSADSALGTSQDCTGARRLCRDAPPLLDWRRFCH*
Ga0070699_1002587842	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VAAWKARLVVAAVVGGLLLSLAVLVWRENERRYAWLAMTGCFGDSATSPLGASQDCTGVRRLCRDAPPLIDWRAYCR*
Ga0070697_1005082622	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MIERVRWLVVVLVVGSLVGSLVVLVWRENERRYAAFGMTGCFGDSATSALGVSQDCTGARRLCRDAPPLIDWRRFCS*
Ga0070697_1017503331	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MIQDVKGPDRARIVAAFVVGSLVLSLLVLVWRENERRYAAFAMTGCFGDSASSALGTSQDCTGAKRLCRDAPPLLDWRRFCS*
Ga0070697_1017548912	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCN*
Ga0070704_1014902632	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VAAWKARLVVAAVVGSLLLSLAVLVWRENERRYAWLAMTGCFGDSATSPLGASQDCTGVRRLCRDAPPLIDWRSYCR*
Ga0066701_100242454	3300005552	Soil	SPGMSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN*
Ga0066695_103968811	3300005553	Soil	MSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHY
Ga0066695_107560031	3300005553	Soil	TLGVARRDGDGDLARLRSALSPGMSRQGIVAAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCD*
Ga0066707_101454292	3300005556	Soil	MWKERLVVVAVAGGLIFSLLFLVWRENERRYSWFAMTGCFGDSADSALGGSQNCTGARRLCRDAPPLIDWRRYCR*
Ga0066707_107491302	3300005556	Soil	MDRSGIVVVVVVGTLVLSLVLFVWRENERRYAAFAMTGCFGDSASSALGTSQDCTGARRLCRDAAPLIDWRRFCR*
Ga0066905_1000530842	3300005713	Tropical Forest Soil	MSRQGVVVIIVVGSLIASLAVLVWRENERRYAALSMTGCFGDSAQSPLGVSQECNGARRLCRDSPPLLDWRHYCN*
Ga0066903_1007175132	3300005764	Tropical Forest Soil	MIEHVRWLVVVLVVGSLVGMLVFLVWRENERRYAAFGMTGCFGDSATSALGASQDCTGARRLCRDVPPLIDWRRYCG*
Ga0066903_1009818443	3300005764	Tropical Forest Soil	VAVVVAGVVLSGLFLFWRENERRYAALAMTGCFGDTAGTPLGATQDCAGARRLCREAPPLLDWRHFCD*
Ga0066903_1011808081	3300005764	Tropical Forest Soil	MSRQGVVVIIVVGSLIASLAVLVWRENERRYAALAMTGCFGDSAQSPLGVTQECNGARRLCRDSPPLLDWRHYCN*
Ga0066653_107698051	3300006791	Soil	LGVARRDGDGDLARLRSALSPSMSRQGIVVAIVVGSLVAALAVLVWRENQRRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN*
Ga0066665_114564122	3300006796	Soil	VAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN*
Ga0066659_118843642	3300006797	Soil	MSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN*
Ga0075433_103595782	3300006852	Populus Rhizosphere	MIERVRWLVVVVVVGSLVGSLVVLVWRENERRYAAFGMTGCFGDSAASALGASQDCTGAKRLCRDAPPLVDWRRFCS*
Ga0075433_113110661	3300006852	Populus Rhizosphere	VIVGSLIASLAGLVWRENERRYAALAMTGCFGDSVSSPLGVTQECNGARRLCRDSPPLIDWRHFCD*
Ga0075425_1002874992	3300006854	Populus Rhizosphere	MWRQKLVVAVIVGSLIASLAGLVWRENERRYAALAMTGCFGDSVSSPLGVTQECNGARRLCRDSPPLIDWRHFCD*
Ga0075434_1019422431	3300006871	Populus Rhizosphere	DGDGDLARLRGALSGHAMSRQGVVVIIVVGSLVAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCN*
Ga0079218_128994091	3300007004	Agricultural Soil	MLDRSDIVVALVFGGLLVSLMFLGWRENERRYAAFAMTGCFGDSARSPLGASQDCTGARRLCRDAAPLVDWRRFCN*
Ga0075435_1003736224	3300007076	Populus Rhizosphere	MIERVRWLVVVVVVGSLVGSLVVLVWRENERRYAAFGMTGCFGDSAESALGASQDCTGAKRLCRDAPPLVDWRRFCS
Ga0066710_1019319722	3300009012	Grasslands Soil	MWRHNIVVALVLGSLIVALAVLVWHENERRYAALSMTGCFGDSASSPLGVSQECNGARRLCRDSPPLLDWRHYCD
Ga0099828_101935732	3300009089	Vadose Zone Soil	MRLAEGHAVWQQRLVVIVIVGGLVLSLVVLVWRENERRYAAFAMTGCFGDSANSPLGMTQECNGARRLCRDSPPLIDWRHYCN*
Ga0099828_102977102	3300009089	Vadose Zone Soil	MWKQRLVVVAVVGSLVFSLLFLMWRENERRYGWFAMTGCFGDSASSALGASQDCTGARRLCREAPPLIDWRGYCR*
Ga0099828_111594061	3300009089	Vadose Zone Soil	MWKERLVVVAVVGSLVFSLLFLVWRENERRYGWFAMTGCFGDSASSALGASQDCTGARRLCRDAPPLID
Ga0099828_112491542	3300009089	Vadose Zone Soil	LKQRLVVIVIVGGLFLSLLVLVWRENERRYAAFAMTGCFGDSASSPLGVTQECNGARRLCRDSPPLIDWRHYCN*
Ga0099827_117785611	3300009090	Vadose Zone Soil	MWKQRLVVVAVVGSLVFSLLFLMWRENERRYGWFAMTGCFGDSASSALGASQDCTGARRLCRDAPPLIDWRSYCR*
Ga0099827_120225892	3300009090	Vadose Zone Soil	VWKQRLVVIVIVGGLFLSLLVLVWRENERRYAAFAMTGCFGDSASSPLGVTQECNGARRLCRDSPPLIDWRHYCN*
Ga0111539_107227112	3300009094	Populus Rhizosphere	VAAALVALVFFLFWRENERRYADLALTGCFGDAARSALGASQDCVGLRRLCRDAPPLVDWRHACN*
Ga0066709_1014306032	3300009137	Grasslands Soil	MWRERLIVAVVLGGLLLSLSTLMWRENERRYASFMMTGCFGDSASSPLGASQDCVGVRRLCRDAPPLVDWRRFCH*
Ga0126384_100814222	3300010046	Tropical Forest Soil	MSRQGLVVVIVVGSLIASLAVVVWRENERRYAALSMTGCFGDSAQSPLGVSQECNGARRLCRDSPPLLDWRHYCN*
Ga0126384_109470922	3300010046	Tropical Forest Soil	MIDCVRWLVVVLVVGSLVGTLVLLVWRENERRYAAFGMTGCFGDSARSALGASQDCTGARRLCRDAPPLIDWRRYCT*
Ga0126382_115495861	3300010047	Tropical Forest Soil	VALVVTGVILAVLFPFWRENERRYADLAITGCFGDSASSALGASQDCTGARRLCRDAPPLFDWRHYCE*
Ga0134070_100408233	3300010301	Grasslands Soil	PATKRAKPRHVSPGHRGGHRVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN*
Ga0134082_101280992	3300010303	Grasslands Soil	MSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGASQECNGAKRLCRDSPPLLDWRHYCN*
Ga0134086_102681631	3300010323	Grasslands Soil	RGGHRVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN*
Ga0134071_101953562	3300010336	Grasslands Soil	MSRQSIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCD*
Ga0134071_108054471	3300010336	Grasslands Soil	VGGLVLSLLVLVWRENERRYASFAMTGCFGDSASSPLGATQECTGARRLCRDSPPLIDWRHYCN*
Ga0126376_107632192	3300010359	Tropical Forest Soil	MIERVRWLVVVLVVGSLVGTLVFLVWRENERRYAAFGMTGCFGDSATSALGASQDCTGARRLCRDVPPLIDWRRYCG*
Ga0126376_119417601	3300010359	Tropical Forest Soil	MSRQGIVVAIVVGSLIAALAVLVWRENERRYVALSMTGCFGDSAQSPLGVSQECNGARRLCRDSPPLLDWRHYCN*
Ga0126372_102350332	3300010360	Tropical Forest Soil	MIERVRWLVVVLVAGSLVGTLVFLVWRENERRYAAFGMTGCFGDSATSALGASQDCTGARRLCRDVPPLIDWRRYCG*
Ga0126372_122883671	3300010360	Tropical Forest Soil	MSRQGLVVIIVVGSLIASLAVLVWRENERRYATLSMTGCFGDSAQSALGVSQECNGARRLCRDSPPLLDWRHYCN*
Ga0126372_124544951	3300010360	Tropical Forest Soil	MNNQAVVVVAVLGALVVSLLALGWHENERRYDGLRMTGCFGDSASSPLGVTQECTGARRGCRDSPPLIDWRHFCD*
Ga0126377_101132672	3300010362	Tropical Forest Soil	MSRQGLVVVIVVGSLIASLAVVVWRENERRYAALSMTECFGDSAQSPLGVSQECNGARRLCRDSPPLLDWRHYCN*
Ga0154003_10678082	3300012081	Attine Ant Fungus Gardens	MWRQALVVTVVVGGLVAALAVLAWRENERRYEAFAMTGCFGDSAASPLGASQDCTGARRLCRDAPPLIDWRSYCR*
Ga0137389_107062412	3300012096	Vadose Zone Soil	GGLFLSLLVLVWRENERRYAAFAMTGCFGDSANSPLGVTQECNGARRLCRDSPPLIDWRHYCN*
Ga0137389_111506452	3300012096	Vadose Zone Soil	MWKQRLVVVAVVGSLVFSLLFLVWRENERRYGWFAMTGCFGDSASSALGASKNCTGARRLCRDAPPLIDWRSYCR*
Ga0137338_10371732	3300012174	Soil	MWRERVVVAVVVGSLVLSLAFLVWRENERRYAAFAMTGCFGDSANSPLGASQNCTGARRLCRDAPPLLDWRRVCH*
Ga0137388_101192553	3300012189	Vadose Zone Soil	MWRQRLVVIVIVGGLFLSLLVLVWRENERRYAAFAMTGCFGDSASSPLGVTQECNGARRLCRDSPPLIDWRHYCN*
Ga0137364_104013461	3300012198	Vadose Zone Soil	MSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPL
Ga0137363_114544141	3300012202	Vadose Zone Soil	MWKERLVVVVVAGGLVFSLLFLVWRENERRYGWFAMTGCFGDSGSSALGASQNCTGARRLCRDAPPLIDWRRYCR*
Ga0137374_100077204	3300012204	Vadose Zone Soil	MIQDVQARDRTGIVVAVVVGSLLLSLLILVWRENERRYAAFAMTGCFEDSARSALGTSQDCTGAKRLCRDAAPLLDWRRFCH*
Ga0137380_103093013	3300012206	Vadose Zone Soil	MSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCD*
Ga0137379_104352733	3300012209	Vadose Zone Soil	MSRQGNVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCD*
Ga0137360_116802431	3300012361	Vadose Zone Soil	MWKERLVVVVVAGGLIFSLLFLVWRENERRYGWFAMTGCFGDSADSALGASQNCTGARRLCRDAPPLIDWRRYCR*
Ga0137361_102616831	3300012362	Vadose Zone Soil	MWKERLVVVVVAGGLIFSLLFLVWRENERRYGWFAMTGCFGDSGSSALGASQNCTGARRLCRDAPPLIDWRR
Ga0134057_11979631	3300012396	Grasslands Soil	LARLRSALSPGMSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN*
Ga0137397_110606332	3300012685	Vadose Zone Soil	MWRPRLVTVLVVLVVAFLLVFPVWRENERRYAALRMTGCFGDSASSALGVTQECTGIRRLCRDAPPLIDWRRFCN*
Ga0137394_109455002	3300012922	Vadose Zone Soil	VIAIVGGLVLSLLVLVWRENERRYASFAMTGCFGDSASSPLGATQECTGARRLCRDSPPLIDWRHYCN*
Ga0137419_113815392	3300012925	Vadose Zone Soil	MSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPVLDWRHYCD*
Ga0126375_100776693	3300012948	Tropical Forest Soil	MSRQGLVVVVVVGSLIVALGALVWRENERRYAALSMTGCFGDSAQSPLGVSQECNGARRLCRDSPPLLDWRHYCN*
Ga0126369_108086781	3300012971	Tropical Forest Soil	MIERVRWLVVVLVVGSLVGTLVFLVWRENERRYAAFGMTGCFGDSATSALGASQDCTGARRLCRDVPPLIDWRRYCT*
Ga0134076_100153242	3300012976	Grasslands Soil	MSRQGIVVVIVVGSLIASLALLVWRENERRYAALAMTGCFGDSAQSPLGVSQECNGARRLCRDSPPLLDWRHYCN*
Ga0134076_100704001	3300012976	Grasslands Soil	MSRQGIVVAIVVGTLVAALAVLVWRENERRYAAVAITGCFGDSAQLPLGVSQECTGAKRLCRDSPPLLDWRHYCN*
Ga0134075_100871651	3300014154	Grasslands Soil	QGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCD*
Ga0180086_10090922	3300014883	Soil	MAGETMWKERIVAAVVGGGLVLSLLFLVWRENERRYAAFAMTGCFGDSANSPLGTSQNCTGARRLCRDAPPLLDWRRVCQ*
Ga0180086_10396732	3300014883	Soil	MWRERVVVAVVVGSLVLSLAFLVWRENERRYAAFAMTGCFGDSANSPLGASQNCTGARRLCRDTPPLLDWRRVCH*
Ga0137418_104633071	3300015241	Vadose Zone Soil	MSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPVLDWRHYCD
Ga0134112_100375331	3300017656	Grasslands Soil	MWRQNIVVALVLGSLIVALAVLVWHENERRYAALSMTGCFGDSASSPLGVSQECNGARRLCRDSPPLLDWRHYCD
Ga0134074_10389862	3300017657	Grasslands Soil	VVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN
Ga0066655_100095245	3300018431	Grasslands Soil	MSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN
Ga0066655_101712121	3300018431	Grasslands Soil	GIVAAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCD
Ga0066667_106094852	3300018433	Grasslands Soil	MSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN
Ga0066662_113363632	3300018468	Grasslands Soil	MDRSGIVVVVVVGTLVLSLVLFVWRENERRYAAFAMTGCFGDSASSALGTSQDCTGARRLCRDAAPLIDWRRFCR
Ga0066662_113835602	3300018468	Grasslands Soil	MSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQGCTGAKRLCRDSPPLLDWRHYCN
Ga0193725_100023517	3300019883	Soil	VSHWKQRLVVLGVVGSLVFSLLFLVWRENERRYSWFAMTGCFGDSANSALGGSQNCTGARRLCRDAPPLIDWRNYCR
Ga0193725_10632572	3300019883	Soil	MWKERLVVVAVAGGLIFSLLFLVWHENERRYSWFAMTGCFGDSADSALGASQNCTGARRLCRDAPPLIDWRRYCR
Ga0207684_100151547	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MIQDVKGPDRARIVAAFVVGSLVLSLLVLVWRENERRYAAFAMTGCFGDSASSALGTSQDCTGAKRLCRDAPPLLDWRRFCN
Ga0207684_100803544	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MIERVRWLVVVLVVGSLVGSLVVLVWRENERRYAAFGITGCFGDSATSALGVSQDCTGARRLCRDAPPLIDWRRFCS
Ga0207684_101219472	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MGTKAYLPGVDIVEAMQRLVVVVVVGSLVLSLFILVWRENERRYAAFAMTGCFGDSASSPLGASQNCTGARRLCRDVPPLVDWRRYCG
Ga0207684_109945832	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MQRLVVVAVVGSLVFSLLFLVWRENERRYGWFAMTGCFGDSASSALGASQNCTGARRLCRDAPPLIDWRSYCR
Ga0207646_100359055	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VDGSRIVVVVVVGSLVLSLLALVWRENERRYAAFAMTGCFEDSASSALGASQGCNGAKRLCRDAPPLLDWRRFCN
Ga0207646_106778952	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MQRLVVVAVVGSLVVSLLFLMWRENERRYGWFAMTGCFGDSASSALGASQNCTGARRLCRDA
Ga0209350_10329642	3300026277	Grasslands Soil	MSRQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCD
Ga0209438_11463122	3300026285	Grasslands Soil	MSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGASQECNGAKRLCRDSPPLLDWRHYCD
Ga0209238_12037972	3300026301	Grasslands Soil	RQGIVVAIVVGSLIAALAVLVWRENERRYAALAITGCFGDSAQSPLGVSQECTGAKRLCRDSPPLLDWRHYCN
Ga0209468_10566612	3300026306	Soil	MSRQGIVVAIVVGSLVAALAVLVWRENQRRYAALAITGCFGDSAQSPLGASQECNGAKRLCRDSPPLLDWRHYCD
Ga0209268_10916312	3300026314	Soil	MSRQGIVVAIVVGSLVAALAVLVWRENEPLGASQECNGAKRLCRDSPPLLDWRHYCD
Ga0209470_10076516	3300026324	Soil	MSRQGIVAAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCD
Ga0209377_11105761	3300026334	Soil	PGMSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSAQSPLGASQECNGAKRLCRDSPPLLDWRHYCD
Ga0209799_11179212	3300027654	Tropical Forest Soil	MIERVRWLVVVLVVGSLVGTLVFLVWRENERRYAAFGMTGCFGDSATSALGASQDCTGARRLCRDVPPLIDWRRYCG
Ga0209283_101261282	3300027875	Vadose Zone Soil	MRLAEGHAVWQQRLVVIVIVGGLVLSLVVLVWRENERRYAAFAMTGCFGDSANSPLGMTQECNGARRLCRDSPPLIDWRHYCN
Ga0209283_108175212	3300027875	Vadose Zone Soil	LKQRLVVIVIVGGLFLSLLVLVWRENERRYAAFAMTGCFGDSASSPLGVTQECNGARRLCRDSPPLIDWRHYCN
Ga0209590_105349191	3300027882	Vadose Zone Soil	MWKQRLVVVAVVGSLVFSLLFLMWRENERRYGWFAMTGCFGDSASSALGASQDCTGARRLCRDAPPLIDWRGYCR
Ga0209486_110829471	3300027886	Agricultural Soil	MLDRSDIVVALVFGGLLVSLMFLGWRENERRYAAFAMTGCFGDSARSPLGASQDCTGARRLCRDAAPLVDWRRFCN
(restricted) Ga0255311_11080411	3300031150	Sandy Soil	VVWKQRLVVVAVLGGLVLTLLVLVWRENERRYAALGMTGCFGDSADSPLHASQDCTGARRLCRDVPPLVDWRCYCR
Ga0307469_121831252	3300031720	Hardwood Forest Soil	MNKQDLAGVAVLGALVVSLLALGWRENERRYDGLRMTGCFGDSASSPLGVTQECNGARRLCRDSPPLIDWRHFCD
Ga0307469_122585982	3300031720	Hardwood Forest Soil	MQRLVVVAVVGSLVVSLLFLMWRENERRYGWFAMTGCFGDSASSALGASQNCTGARRLCRDAPPLIDWRSYCR
Ga0307468_1006640812	3300031740	Hardwood Forest Soil	VVAVAGSLVLSLVFLTWRENERRYAAFAMTGCFGDSATSALGASQDCTGARRLCRDAPPLVDWRSYCR
Ga0318554_106939751	3300031765	Soil	LPGARRHDQPEMWRARIVVAAVVASLILSGLFLFWRENERRYAALAMTGCFGDSASPPLDASQECTGARRLCREAPPLIDWRHFCD
Ga0307473_100221623	3300031820	Hardwood Forest Soil	MSRQGIVVAIVVGSLVAALAVLVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCN
Ga0307473_105651972	3300031820	Hardwood Forest Soil	VWRQRLVVIVIVGGLVLSLLVLVWRENERRYAAFAMTGCFGDSASSPLGVTQECNGARRLCRDSPPLIDWRHYCD
Ga0307473_108234501	3300031820	Hardwood Forest Soil	QRLVVVAVVGSLVFSLLFLVWRENERRYGWFAMTGCFGDSASSALGASQNCTGARRLCRDAPPLIDWRSYCR
Ga0307471_1020650432	3300032180	Hardwood Forest Soil	MWKERLVVVAVAGGLVFSLLFLVWRENERRYGWFAMTGCFGDSATSALGASQDCTGARRLCRDAPPLIDWRSYCR
Ga0307471_1027525572	3300032180	Hardwood Forest Soil	VSQWKQRLVVMAVVGSLVFSLLFLVWRENERRYSWFAMTGCFGDSANSPLGGSQNCTGARRLCRDAPPLIDWRSYCR
Ga0307471_1035670051	3300032180	Hardwood Forest Soil	MWRERIVVAVVGGSLVLSLLFLVWRENERRYEAFAMTGCFGDSADSPLGASQDCTGARRLCRDAPPLIDWRRVCN
Ga0307472_1001711772	3300032205	Hardwood Forest Soil	MSRQGVVVIIVVGSLIAALAALVWRENERRYAALAITGCFGDSANSPLGASQECNGAKRLCRDSPPLLDWRHYCN
Ga0307472_1002531382	3300032205	Hardwood Forest Soil	MNKQNLMVVAVLGALVVSLLALGWRENERRYDGLRITGCFGDSASSPLGVTQECNGARRLCRDSPPLIDWRHFCD
Ga0307472_1007852042	3300032205	Hardwood Forest Soil	VIGSLIGSLAFLVWHENERRYDAFAMTGCFGDSADSPLGASQNCTGARRLCRDAPPLIDWRRYCR
Ga0334722_103518282	3300033233	Sediment	MWTARLVVALVVGIVILAVGFAFWHENERRYAAFAITGCFEEGTTSALGSSRACTGVRRLCRD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters