Metagenome / Metatranscriptome Family F054599

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054599
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	47 residues
Representative Sequence	RRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA
Number of Associated Samples	118
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	94.24 %
% of genes from short scaffolds (< 2000 bps)	88.49 %
Associated GOLD sequencing projects	112
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.871 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (12.950 % of family members)
Environment Ontology (ENVO)	Unclassified (36.691 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.007 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.21% β-sheet: 0.00% Coil/Unstructured: 54.79%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF02863	Arg_repressor_C	10.79
PF01316	Arg_repressor	8.63
PF02729	OTCace_N	4.32
PF00764	Arginosuc_synth	3.60
PF02803	Thiolase_C	0.72
PF00486	Trans_reg_C	0.72
PF04307	YdjM	0.72
PF00145	DNA_methylase	0.72
PF01979	Amidohydro_1	0.72
PF12801	Fer4_5	0.72
PF01380	SIS	0.72
PF13485	Peptidase_MA_2	0.72
PF13649	Methyltransf_25	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG1438	Arginine repressor	Transcription [K]	19.42
COG0137	Argininosuccinate synthase	Amino acid transport and metabolism [E]	3.60
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.72
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.72
COG1988	Membrane-bound metal-dependent hydrolase YbcI, DUF457 family	General function prediction only [R]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.87 %
Unclassified	root	N/A	38.13 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.87 %
Unclassified	root	N/A	38.13 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.87 %
Unclassified	root	N/A	38.13 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	46.76 %
Unclassified	root	N/A	38.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.13 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	21.58 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.13 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.58 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	14.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.13 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.58 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.13 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.58 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3.60 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.13 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.58 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.44 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10125052	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300001154\|JGI12636J13339_1051381	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300001593\|JGI12635J15846_10148892	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1608	Open in IMG/M
3300001593\|JGI12635J15846_10184230	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1397	Open in IMG/M
3300001593\|JGI12635J15846_10536561	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300001593\|JGI12635J15846_10708910	Not Available	580	Open in IMG/M
3300002245\|JGIcombinedJ26739_101115771	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300004080\|Ga0062385_10029047	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2191	Open in IMG/M
3300004082\|Ga0062384_100997960	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	598	Open in IMG/M
3300004091\|Ga0062387_100965304	Not Available	650	Open in IMG/M
3300004152\|Ga0062386_100125360	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1989	Open in IMG/M
3300004152\|Ga0062386_101261796	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300004635\|Ga0062388_100113243	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1975	Open in IMG/M
3300004635\|Ga0062388_101342303	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300005938\|Ga0066795_10082612	All Organisms → cellular organisms → Bacteria → Acidobacteria	953	Open in IMG/M
3300005995\|Ga0066790_10102250	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300006052\|Ga0075029_100251618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1116	Open in IMG/M
3300006102\|Ga0075015_100366564	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300006102\|Ga0075015_100438432	All Organisms → cellular organisms → Bacteria → Acidobacteria	743	Open in IMG/M
3300006102\|Ga0075015_100877692	Not Available	543	Open in IMG/M
3300007265\|Ga0099794_10408362	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300007265\|Ga0099794_10717549	Not Available	533	Open in IMG/M
3300009088\|Ga0099830_10630142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	881	Open in IMG/M
3300009090\|Ga0099827_10735574	Not Available	853	Open in IMG/M
3300009629\|Ga0116119_1006598	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3706	Open in IMG/M
3300009638\|Ga0116113_1035086	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300009643\|Ga0116110_1055388	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300009646\|Ga0116132_1109374	Not Available	848	Open in IMG/M
3300009665\|Ga0116135_1070964	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300009665\|Ga0116135_1306652	Not Available	628	Open in IMG/M
3300009700\|Ga0116217_10736200	Not Available	609	Open in IMG/M
3300010339\|Ga0074046_10099666	All Organisms → cellular organisms → Bacteria	1876	Open in IMG/M
3300010341\|Ga0074045_10167774	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300010343\|Ga0074044_10004851	All Organisms → cellular organisms → Bacteria	11074	Open in IMG/M
3300010343\|Ga0074044_10248987	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1173	Open in IMG/M
3300010858\|Ga0126345_1083191	Not Available	614	Open in IMG/M
3300011270\|Ga0137391_11575228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300012202\|Ga0137363_10809736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300012203\|Ga0137399_10055425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2901	Open in IMG/M
3300012205\|Ga0137362_10384770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1215	Open in IMG/M
3300012206\|Ga0137380_11528255	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300012363\|Ga0137390_10341689	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1478	Open in IMG/M
3300012918\|Ga0137396_11305720	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300012923\|Ga0137359_11327938	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300014155\|Ga0181524_10019925	All Organisms → cellular organisms → Bacteria	4952	Open in IMG/M
3300014158\|Ga0181521_10055233	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2700	Open in IMG/M
3300014159\|Ga0181530_10653357	Not Available	510	Open in IMG/M
3300014162\|Ga0181538_10253369	Not Available	969	Open in IMG/M
3300014167\|Ga0181528_10449598	Not Available	705	Open in IMG/M
3300014167\|Ga0181528_10853864	Not Available	513	Open in IMG/M
3300014201\|Ga0181537_10541262	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300014491\|Ga0182014_10243268	All Organisms → cellular organisms → Bacteria → Acidobacteria	948	Open in IMG/M
3300014838\|Ga0182030_11692690	Not Available	513	Open in IMG/M
3300015193\|Ga0167668_1007733	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2421	Open in IMG/M
3300016730\|Ga0181515_1279190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300017823\|Ga0187818_10232754	Not Available	805	Open in IMG/M
3300017928\|Ga0187806_1368980	Not Available	515	Open in IMG/M
3300017938\|Ga0187854_10257342	Not Available	755	Open in IMG/M
3300017940\|Ga0187853_10214529	Not Available	895	Open in IMG/M
3300017940\|Ga0187853_10448318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300017972\|Ga0187781_11466736	Not Available	506	Open in IMG/M
3300018006\|Ga0187804_10396851	Not Available	610	Open in IMG/M
3300018006\|Ga0187804_10458887	Not Available	569	Open in IMG/M
3300018007\|Ga0187805_10020991	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2846	Open in IMG/M
3300018009\|Ga0187884_10185186	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300018012\|Ga0187810_10246925	All Organisms → cellular organisms → Bacteria → Acidobacteria	732	Open in IMG/M
3300018030\|Ga0187869_10051221	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2179	Open in IMG/M
3300018030\|Ga0187869_10172137	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1067	Open in IMG/M
3300018030\|Ga0187869_10362346	Not Available	693	Open in IMG/M
3300018035\|Ga0187875_10297320	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300018035\|Ga0187875_10772949	Not Available	502	Open in IMG/M
3300018038\|Ga0187855_10323592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	901	Open in IMG/M
3300018043\|Ga0187887_10159514	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300018044\|Ga0187890_10782639	Not Available	540	Open in IMG/M
3300018046\|Ga0187851_10785698	Not Available	536	Open in IMG/M
3300018047\|Ga0187859_10173511	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300018047\|Ga0187859_10521173	Not Available	663	Open in IMG/M
3300018057\|Ga0187858_10900283	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300018057\|Ga0187858_10930813	Not Available	510	Open in IMG/M
3300018058\|Ga0187766_10801981	Not Available	658	Open in IMG/M
3300018062\|Ga0187784_10885809	Not Available	711	Open in IMG/M
3300018085\|Ga0187772_10277123	All Organisms → cellular organisms → Bacteria → Acidobacteria	1144	Open in IMG/M
3300018086\|Ga0187769_10501376	Not Available	916	Open in IMG/M
3300018090\|Ga0187770_11024216	Not Available	665	Open in IMG/M
3300019787\|Ga0182031_1353534	Not Available	1786	Open in IMG/M
3300020199\|Ga0179592_10317914	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300020581\|Ga0210399_11398975	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300021178\|Ga0210408_11288204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300021407\|Ga0210383_11142377	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300021479\|Ga0210410_10328933	All Organisms → cellular organisms → Bacteria → Acidobacteria	1371	Open in IMG/M
3300022881\|Ga0224545_1037889	Not Available	683	Open in IMG/M
3300023090\|Ga0224558_1020473	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3374	Open in IMG/M
3300023090\|Ga0224558_1025463	All Organisms → cellular organisms → Bacteria → Acidobacteria	2847	Open in IMG/M
3300025406\|Ga0208035_1029357	Not Available	877	Open in IMG/M
3300025442\|Ga0208034_1004839	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5695	Open in IMG/M
3300025453\|Ga0208455_1085081	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300025922\|Ga0207646_10414962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1215	Open in IMG/M
3300026294\|Ga0209839_10067508	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300026469\|Ga0257169_1001486	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2024	Open in IMG/M
3300026507\|Ga0257165_1011935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1378	Open in IMG/M
3300026508\|Ga0257161_1067112	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300026514\|Ga0257168_1046034	All Organisms → cellular organisms → Bacteria → Acidobacteria	953	Open in IMG/M
3300027590\|Ga0209116_1150482	Not Available	505	Open in IMG/M
3300027625\|Ga0208044_1042626	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1485	Open in IMG/M
3300027738\|Ga0208989_10147541	All Organisms → cellular organisms → Bacteria → Acidobacteria	791	Open in IMG/M
3300027767\|Ga0209655_10315668	Not Available	503	Open in IMG/M
3300027783\|Ga0209448_10255189	Not Available	578	Open in IMG/M
3300027825\|Ga0209039_10133371	Not Available	1043	Open in IMG/M
3300027862\|Ga0209701_10304659	All Organisms → cellular organisms → Bacteria → Acidobacteria	914	Open in IMG/M
3300027882\|Ga0209590_10922825	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300027903\|Ga0209488_10998096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300028765\|Ga0302198_10140409	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300029883\|Ga0311327_10006933	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	10033	Open in IMG/M
3300029883\|Ga0311327_10310799	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300029913\|Ga0311362_10119783	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3368	Open in IMG/M
3300029944\|Ga0311352_10514660	Not Available	966	Open in IMG/M
3300029952\|Ga0311346_10293820	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1680	Open in IMG/M
3300029999\|Ga0311339_11231466	Not Available	683	Open in IMG/M
3300030011\|Ga0302270_10656292	Not Available	534	Open in IMG/M
3300030041\|Ga0302274_10349442	Not Available	673	Open in IMG/M
3300030049\|Ga0302191_10354002	Not Available	536	Open in IMG/M
3300030339\|Ga0311360_10743393	Not Available	780	Open in IMG/M
3300030524\|Ga0311357_11289596	Not Available	627	Open in IMG/M
3300030578\|Ga0210275_10330706	Not Available	540	Open in IMG/M
3300030617\|Ga0311356_12005955	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300031028\|Ga0302180_10298466	Not Available	831	Open in IMG/M
3300031236\|Ga0302324_101538788	Not Available	861	Open in IMG/M
3300031258\|Ga0302318_10396648	Not Available	696	Open in IMG/M
3300031616\|Ga0307508_10822112	Not Available	548	Open in IMG/M
3300031820\|Ga0307473_11269209	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300031823\|Ga0307478_10477893	Not Available	1037	Open in IMG/M
3300031823\|Ga0307478_11318504	Not Available	600	Open in IMG/M
3300032180\|Ga0307471_104129137	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300033402\|Ga0326728_10631205	Not Available	825	Open in IMG/M
3300033513\|Ga0316628_100135133	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2854	Open in IMG/M
3300033561\|Ga0371490_1037040	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300033755\|Ga0371489_0171911	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300033826\|Ga0334847_005466	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300033829\|Ga0334854_022123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1537	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.28%
Host-Associated	Host-Associated	0.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.43%
Aquatic	Environmental → Aquatic	38.85%
Plants	Host-Associated → Plants	0.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.17%
Freshwater	Environmental → Aquatic → Freshwater	35.97%
Peat	Environmental → Terrestrial → Peat	17.27%
Sediment	Environmental → Aquatic → Sediment	2.88%
Roots	Host-Associated → Plants → Roots	0.72%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	35.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.46%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	17.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.23%
Loam	Environmental → Terrestrial → Soil → Loam	6.47%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	25.18%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	17.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.11%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.35%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.91%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.32%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.72%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	12.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.51%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.19%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	7.19%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.04%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.32%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.32%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.32%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.60%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.88%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.16%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.16%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.16%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.16%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.72%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.72%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009629	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300016730	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300025406	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)	Environmental	Open in IMG/M
3300025442	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030049	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_1	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030578	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO105-VCO054SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033561	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fraction	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300033826	Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 1-5	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101250521	3300000567	Peatlands Soil	DQVVASSRKAIASAHLTEDGYVRHRMLELRQIASRVPLTAA*
JGI12636J13339_10513812	3300001154	Forest Soil	EFPERRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
JGI12635J15846_101488923	3300001593	Forest Soil	RRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
JGI12635J15846_101842301	3300001593	Forest Soil	PEFPERRPLDQMIATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLAAA*
JGI12635J15846_105365612	3300001593	Forest Soil	FPERRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
JGI12635J15846_107089101	3300001593	Forest Soil	FDPQFPERRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
JGIcombinedJ26739_1011157712	3300002245	Forest Soil	PCEFCREFDPQFPERRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0062385_100290474	3300004080	Bog Forest Soil	PQFLQRRPLDQMVATSRRAVASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0062384_1009979602	3300004082	Bog Forest Soil	QMVATSRKATASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0062387_1009653041	3300004091	Bog Forest Soil	DRRPLDQMVTGSRKASASAHLTEDGYVRHRMLELRRMASRMPLTAA*
Ga0062386_1001253604	3300004152	Bog Forest Soil	PCEFCRELDPQFPQRRPLDQVVASSRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0062386_1012617962	3300004152	Bog Forest Soil	PQFPQRRQVDQMVASSRKACASAHLTEDGYVRHRMLELRKITSRPPLTAA*
Ga0062388_1001132431	3300004635	Bog Forest Soil	LDPHFPLRRPVDQMVATSRKATASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0062388_1013423032	3300004635	Bog Forest Soil	PCEFCREFDPHFPTRRPLDQMVASSRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0066795_100826122	3300005938	Soil	ERRPLDQMVASSRKAIASAHLTEDGYVRHRMLELRQIAARASLTAA*
Ga0066790_101022501	3300005995	Soil	LDQVVASSRKASAAAHLTEDGYVRHRMLELRRITSRPPMAAA*
Ga0075029_1002516182	3300006052	Watersheds	VDQMVASSRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0075015_1003665641	3300006102	Watersheds	VATNRKHTASAHLTEDGYVRHRMLELSRIVSRTPRNAA*
Ga0075015_1004384322	3300006102	Watersheds	CEFCRELDPQFRERRPLDQMVTGSRKAIASAHLTEDGYVRHRMLELRRLASRAPLTAA*
Ga0075015_1008776921	3300006102	Watersheds	DQMVATNRKHTASAHLTEDGYVRHRMLELSRIASRIPTTAA*
Ga0099794_104083621	3300007265	Vadose Zone Soil	PDRHPLDQMVGSNRKHGASAHLTEDGYVRHRMLELSQLASRPPRSAA*
Ga0099794_107175491	3300007265	Vadose Zone Soil	GFAQRHALDQMVGANPRNTASAHLTENGYVRHRMLELNQLVSRRPLTAA*
Ga0099830_106301422	3300009088	Vadose Zone Soil	ERRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0099827_107355742	3300009090	Vadose Zone Soil	DPQFPERRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLSAA*
Ga0116119_10065981	3300009629	Peatland	PLDQMVASSRKAIASAHLTEDGYVRHRMLELRRMTARAPLTAA*
Ga0116113_10350861	3300009638	Peatland	PARRALDQMVSGSRKAIASAHLTEDGYVRHRMLELRRLTSRAPLTAA*
Ga0116110_10553881	3300009643	Peatland	SRPCEFCRELDPQFLMRRPLDQMVATSRRPTASAHLTEDGYVRHRMLELRQITSRAPLTAA*
Ga0116132_11093742	3300009646	Peatland	LDQMVASSRKAIASAHLTEDGYVRHRMLELRRIASREPLTAA*
Ga0116135_10709642	3300009665	Peatland	MVASSRKAIASAHLTEDGYVRHRMLELRRITSRAPL
Ga0116135_13066521	3300009665	Peatland	FCREFDPQFPQRRPLDQVVTGGRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0116217_107362001	3300009700	Peatlands Soil	SRKAIASAHLTEDGYVRHRMLELRQIASRVPLTAA*
Ga0074046_100996663	3300010339	Bog Forest Soil	MVASSRKAIASAHLTEDGYVRHRMLELRRIASRAPLTAA*
Ga0074045_101677743	3300010341	Bog Forest Soil	AVSRKANASAHLTEDGYVRHRMLELRRITSRRPLTAA*
Ga0074044_100048515	3300010343	Bog Forest Soil	MVASNRKAGASAHLTEDGYVRHRMLELRRIASRAPLTAA*
Ga0074044_102489872	3300010343	Bog Forest Soil	RKAIASAHLTEDGYVRHRVLELRQMASRTPLTAA*
Ga0126345_10831912	3300010858	Boreal Forest Soil	DQVVSFSRKSTASAHLTEDGYIRHRIVELTRLASRTSRNVA*
Ga0137391_115752281	3300011270	Vadose Zone Soil	TRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0137363_108097362	3300012202	Vadose Zone Soil	PQFSDRNPLDQIVGSNRKHGASAHLTEDGYVRHRMLELSQLASRPPRSAA*
Ga0137399_100554254	3300012203	Vadose Zone Soil	PHRHPADQMVGASRRSVASAHLTEDGYVQHRILELGQLASGRPRNAA*
Ga0137362_103847701	3300012205	Vadose Zone Soil	PLDQMVATSRRPVASAHLTEDGYVRHRMLELRLKTSREPVTAA*
Ga0137380_115282552	3300012206	Vadose Zone Soil	CKKLDPGFPDRHPLDKMVGSNRKHGASAHLTEDGYVRHRMLELSQLASRPPRSAA*
Ga0137390_103416893	3300012363	Vadose Zone Soil	QMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0137396_113057201	3300012918	Vadose Zone Soil	MVATTRKAIASAHLTEDGYVRHRMLELRRITSRTPLTAA*
Ga0137359_113279382	3300012923	Vadose Zone Soil	PLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRTPLTAA*
Ga0181524_100199252	3300014155	Bog	LDPQFRQRRPVDQMVACSRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0181521_100552334	3300014158	Bog	DPQFRQRRPVDQMVACSRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0181530_106533572	3300014159	Bog	SRKATASAHLTEDGYVRHRMLELRRMTARAPLTAA*
Ga0181538_102533691	3300014162	Bog	PQRHPLDQMVASSRKAIASAHLTEDGYVRHRMLELRRIASREPLTAA*
Ga0181528_104495981	3300014167	Bog	PQFPHRRPLDQMVSGSRKPIASAHLTEDGYVRHRMLELRRLVSRAPLTAA*
Ga0181528_108538642	3300014167	Bog	PCEFCCQHDPNFPTRRPLDQMVISTRKAIASSHLTEDGYVRHRILELRKMASRGSLTAA*
Ga0181537_105412623	3300014201	Bog	VVTSRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0182014_102432681	3300014491	Bog	LDQMVASSRKATASAHLTEDGYVRHRMLELRRMTARAPLTAA*
Ga0182030_116926901	3300014838	Bog	LDQMVAGRRKAIASAHLTEDGYVHHRMLELRRLVSRAPLTAA*
Ga0167668_10077334	3300015193	Glacier Forefield Soil	PCEFCRELDPQFPERRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA*
Ga0181515_12791903	3300016730	Peatland	PLDQMVASSRKAIASSHLTEDGYVRHRMLELRRIASRAPLTAA
Ga0187818_102327541	3300017823	Freshwater Sediment	PLDQMVASSRKAIASAHLTEDGYVRHRMLELRRIASRVPLTAA
Ga0187806_13689801	3300017928	Freshwater Sediment	SRKAIASAHLTEDGYVRHRMLELRRITARAPLTAA
Ga0187854_102573421	3300017938	Peatland	PLDQMVASSRKAIASAHLTEDGYVRHRMLELRRIASREPLTAA
Ga0187853_102145292	3300017940	Peatland	CEFCRELDPQFPQRRPLDQMVASSRKAIASAHLTEDGYVRHRMLELRRIASREPLTAA
Ga0187853_104483182	3300017940	Peatland	RPCEFCREFDPQFPARRALDQMVSGSRKAIASAHLTEDGYVRHRMLELRRLTSRAPLTAA
Ga0187781_114667362	3300017972	Tropical Peatland	LDQMVTSSRKAIASAHLTEDGYVRHRMLELRRIAAREPLTAA
Ga0187804_103968511	3300018006	Freshwater Sediment	SSRKAIASAHLTEDGYVRHRMLELRRIAAREPLNAA
Ga0187804_104588871	3300018006	Freshwater Sediment	QFPQRHPLDQMVASSRKAIASAHLTEDGYVRHRMLELRRIASREPLTAA
Ga0187805_100209911	3300018007	Freshwater Sediment	MVASSRKASASAHLTEDGYVRHRMLELRRIASRMPLTAA
Ga0187884_101851862	3300018009	Peatland	LDQMVASSRKATASAHLTEDGYVRHRMLELRRMTARAPLTAA
Ga0187810_102469251	3300018012	Freshwater Sediment	HDSKFRERHPLDQMVASSRKAIASAHLTEDGYVRHRMVELRQIAARAPLTAA
Ga0187869_100512211	3300018030	Peatland	LDPQFLMRRPLDQMVATSRRPTASAHLTEDGYVRHRMLELRQITSRAPLTAA
Ga0187869_101721373	3300018030	Peatland	ASSRKAIASAHLTEDGYVRHRMLELRRIASRVPLTAA
Ga0187869_103623461	3300018030	Peatland	PLDQMVASSRKACASAHLTEDGYVRHRMLELRRLTSRMPLTAA
Ga0187875_102973202	3300018035	Peatland	CEFCREFDPQFPQRRPLDQVVTGGRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA
Ga0187875_107729491	3300018035	Peatland	FCRELDPQFLQRRPLDQMVASSRKAIASAHLTEDGYVRHRMLELRRMTARAPLTAA
Ga0187855_103235922	3300018038	Peatland	MVAGSRKAIASAHLTEDGYVRHRMLELRRLVSRAPLTAA
Ga0187887_101595142	3300018043	Peatland	GSRKAIASAHLTEDGYVRHRMLELRRMASRAPLTAA
Ga0187890_107826391	3300018044	Peatland	PQFPQRRPLDQVVTGGRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA
Ga0187851_107856981	3300018046	Peatland	DPQFPQRHPLDQMVASSRKAIASAHLTEDGYVRHRMLELRRIASRVPLTAA
Ga0187859_101735112	3300018047	Peatland	RPCEFCRELDPQFPQRRPLDQMVASSRKAIASAHLTEDGYVRHRMLELRRIAARAPLTAA
Ga0187859_105211731	3300018047	Peatland	PCEFFREFDPQFPQRRPLDQVVTGGRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA
Ga0187858_109002832	3300018057	Peatland	FPQRHPLDQMVASSRKAIASSHLTEDGYVRHRMLELRRIASRAPLTAA
Ga0187858_109308132	3300018057	Peatland	FPQRRPLDQMVASSRKAIASAHLTEDGYVRHRMLELRRIASREPLTVA
Ga0187766_108019811	3300018058	Tropical Peatland	EFCQEHDPEFYERRASDQMVATNRRYTASAHLTEDGYVRHRMLELRQLASRLPCPAA
Ga0187784_108858092	3300018062	Tropical Peatland	QFPQRRPLDQMVTSSRKAIASAHLTEDGYVRHRMLELRRIAAREPLTAA
Ga0187772_102771231	3300018085	Tropical Peatland	QFTNRRPLDQMVAATRKATASAHLTEDGYVRHRILELRRITSRVPVNAA
Ga0187769_105013761	3300018086	Tropical Peatland	QFPQRHPLDQMVASSRKAIASAHLTEDGYVRHRMLELRRIASRVPLTAA
Ga0187770_110242161	3300018090	Tropical Peatland	QDPHFSNRKPMDQMVVSTRKAVASSHLTEDGYVRHRILELRKISARAAVTAA
Ga0182031_13535343	3300019787	Bog	VSFAGSSTPQFPARRALDQMVSGSRKAIASAHLTEDGYVRHRMLELRRLTSRAPLTAA
Ga0179592_103179142	3300020199	Vadose Zone Soil	SRPCEFCREFDPEFHGRRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTA
Ga0210399_113989751	3300020581	Soil	PQRRPLDQVVASSRKASASAHFTEDGYVRHRMLELRRITSRAPLTAA
Ga0210408_112882042	3300021178	Soil	SSRPCEFCREFDPQFPERRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA
Ga0210383_111423772	3300021407	Soil	DPHFPQRRPLDQVVASSRKASASAHFTEDGYVRHRMLELRRITSRAPLTAA
Ga0210410_103289333	3300021479	Soil	SRPCEFCREFDPEFHGRRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRQITSRAPLTA
Ga0224545_10378891	3300022881	Soil	PQRRPLDQVVTGGRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA
Ga0224558_10204735	3300023090	Soil	ERRPLDQMVAISRKAIASAHLTEDGYVRHRMLELRRMTSRAPLTAA
Ga0224558_10254634	3300023090	Soil	SRKATASAHLTEDGYVRHRMLELRRMTARAPLTAA
Ga0208035_10293571	3300025406	Peatland	LDPQFQHRRPLDQMVSGSRKAIASAHLTEDGYVRHRMLELRRLVSRAPLTAA
Ga0208034_10048397	3300025442	Peatland	VASSRKAIASAHLTEDGYVRHRMLELRRMTARAPLTAA
Ga0208455_10850813	3300025453	Peatland	SRPCEFCRELDPQFPQRHPLDQMVASSRKAIASSHLTEDGYVRHRMLELRRIASRAPLTA
Ga0207646_104149623	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	GRLCDFCKKLDPQFSHRRPLDQMVGSNRKHGASAHLTEDGYVRHRMLELSQLASRPPRSA
Ga0209839_100675081	3300026294	Soil	DTNFPERHPLDQLVAPNRKPNASAHLTEDGYVRHRMLELRRITSRPPMAAA
Ga0257169_10014861	3300026469	Soil	CRELDPQFPKRRPLDQMVATSRKPVASAHLTEDGYVRHRMLELRQKTSREPVTAA
Ga0257165_10119351	3300026507	Soil	CEFCRELDPHFPERRPLDQMVATSRRAVASAHLTEDGYVRHRMLELRQKTSREPVTAA
Ga0257161_10671121	3300026508	Soil	VATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA
Ga0257168_10460342	3300026514	Soil	DPHFPERRPLDQMVATSRRAVASAHLTEDGYVRHRMLELRQKTSREPVTAA
Ga0209116_11504821	3300027590	Forest Soil	GQRRPLDQMVASSRQAAASSHLTEDGYVRHRMLELRRITARAPLTAA
Ga0208044_10426261	3300027625	Peatlands Soil	DQMVASSRKAIASAHLTEDGYVRHRMLELRRIASREPLTAA
Ga0208989_101475412	3300027738	Forest Soil	DQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA
Ga0209655_103156681	3300027767	Bog Forest Soil	SRPCEFCRELDPHFPKRRPLDQMVASSRKASASAHLSEDGYVRHRVLELRRITSREPLTA
Ga0209448_102551891	3300027783	Bog Forest Soil	MVATSRKAIASAHLTEDGYVRHRMLELRRLTSRPPLVAA
Ga0209039_101333711	3300027825	Bog Forest Soil	SCEFCREFDPQFRERRPLDQMVAGSRKAIASAQLTEDGYVRHRMLELRRIASRAPLTAA
Ga0209701_103046592	3300027862	Vadose Zone Soil	ERRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA
Ga0209590_109228251	3300027882	Vadose Zone Soil	CEFCREFDPQFPERRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLSAA
Ga0209488_109980961	3300027903	Vadose Zone Soil	PLDQMVATTRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA
Ga0302198_101404092	3300028765	Bog	RQRRPLDQMVAGRRKAIASAHLTEDGYVHHRMLELRRLVSRAPLTAA
Ga0311327_100069339	3300029883	Bog	RRPLDQMVAGRRKAIASAHLTEDGYVHHRMLELRRLVSRAPLTAA
Ga0311327_103107992	3300029883	Bog	QMVSGSRKAIASAHLTEDGYVRHRMLELRRLVSRAPLTAA
Ga0311362_101197831	3300029913	Bog	RPLDQMVSGSRKAIASAHLTEDGYVRHRMLELRRLVSRAPLTAA
Ga0311352_105146601	3300029944	Palsa	RPLDQMVASSRKACASAHFTEDGYVRHRMLELRRLRSRAPLSAA
Ga0311346_102938203	3300029952	Bog	KFHHRRPLDQMVSGSRKPIASAHLTEDGYVHHRMLELRRLVSRAPLTAA
Ga0311339_112314662	3300029999	Palsa	PLDQMVTGSRKASASAHLTEDGYVRHRMLELRRMASRMPLTAA
Ga0302270_106562921	3300030011	Bog	VSGSRKAIASAHLTEDGYVRHRMLELRRLVSRAPLTAA
Ga0302274_103494422	3300030041	Bog	PLDQMVSGSRKAIASAHLTEDGYVRHRMLELRRLVSRAPLTAA
Ga0302191_103540021	3300030049	Bog	DPQFRQRRPLDQMVAGRRKAIASAHLTEDGYVHHRMLELRRLVSRAPLTAA
Ga0311360_107433932	3300030339	Bog	RPCEFCRELDPHFPERRPLDQMVAISRKAIASAHLTEDGYVRHRMLELRRMTSRAPLTAA
Ga0311357_112895962	3300030524	Palsa	PQFPHRRPLDQMVVSGRKAIASAHLTEDGYVRHRMLELRRISSRAPLTAA
Ga0210275_103307061	3300030578	Soil	PQFPARRPLDQMVASSRKAIASAHLTEDGYVRHRMLELRSITSRTPLTAA
Ga0311356_120059551	3300030617	Palsa	FPHRRPLDQMVATRRKACASAHLTEDGYVRHRMLELRRLTSRVPLTAA
Ga0302180_102984661	3300031028	Palsa	VSGRKAIASAHLTEDGYVRHRMLELRRISSRAPLTAA
Ga0302324_1015387883	3300031236	Palsa	DPQFPHRRPLDQMVASSRKACASAHFTEDGYVRHRMLELRRLRSRAPLSAA
Ga0302318_103966482	3300031258	Bog	SRPCEFCEQLDPQFRQRRPLDQMVAGRRKAIASAHLTEDGYVHHRMLELRRLVSRAPLTA
Ga0307508_108221121	3300031616	Ectomycorrhiza	CEFCREFDPQFPQRRPADQMVASSRKAIASSHLTEDGYVRHRMLELRRITTRAPLTAA
Ga0307473_112692091	3300031820	Hardwood Forest Soil	DRNPLDQIVGSNRKHGASAHLTEDGYVRHRMLELSQLASRPPRSAA
Ga0307478_104778931	3300031823	Hardwood Forest Soil	QFIQRRPLDQMVATSRKATASAHLTEDGYVRHRILELRRITSRVPVNAA
Ga0307478_113185041	3300031823	Hardwood Forest Soil	TRKAIASAHLTEDGYVRHRVLELRRITSRAPLTAA
Ga0307471_1041291371	3300032180	Hardwood Forest Soil	EFHGRRPLDQMVATTRKAIASAHLTEDGYVRHRMLELRQITSRAPLTAA
Ga0326728_106312051	3300033402	Peat Soil	DPQFPQRRPLDQMVASSRKATASAHLTEDGYVRHRMLELRRIAAPRAPLTAA
Ga0316628_1001351331	3300033513	Soil	FDPNFPQRKPLDQMVVANRQHIASAHLTEDGYVRHRMVELSGLVARRPVTAA
Ga0371490_10370401	3300033561	Peat Soil	HQRRPLDQMVATSRKAIASAHLTEDGYVRHRMLELRRIVSRAPLTAA
Ga0371489_0171911_1020_1139	3300033755	Peat Soil	MVATSRKAIASAHLTEDGYVRHRMLELRRIVSRAPLTAA
Ga0334847_005466_122_241	3300033826	Soil	MVASSRKAIASAHLTEDGYVRHRMLELRRLTSRAPLTAA
Ga0334854_022123_1244_1363	3300033829	Soil	MVITSRKASASAHLTEDGYVRHRVLELRQIASRAPLTAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054599

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences