Metagenome / Metatranscriptome Family F054073

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F054073
Family Type	Metagenome / Metatranscriptome
Number of Sequences	140
Average Sequence Length	65 residues
Representative Sequence	VESYSGRILVEDASGARFYVHEYRGRRTFLRVRRFMLDTGEDVRRVDARTFVIAATGERLTRVPEE
Number of Associated Samples	75
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.64 %
% of genes near scaffold ends (potentially truncated)	30.00 %
% of genes from short scaffolds (< 2000 bps)	86.43 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (58.571 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (22.857 % of family members)
Environment Ontology (ENVO)	Unclassified (55.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (75.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 45.74% Coil/Unstructured: 54.26%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
d.3.1.1: Papain-like	d1cv8a_	1cv8	0.59438
b.55.1.3: Ran-binding domain	d2y8ga_	2y8g	0.59012
b.60.1.4: Hypothetical protein YodA	d1oeja_	1oej	0.58556
b.61.7.1: Extracellular hemoglobin linker subunit, receptor domain	d2gtln1	2gtl	0.58462
b.42.1.2: Interleukin-1 (IL-1)	d2vxti_	2vxt	0.5844

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF13641	Glyco_tranf_2_3	15.71
PF13450	NAD_binding_8	9.29
PF04055	Radical_SAM	5.00
PF01925	TauE	4.29
PF09608	Alph_Pro_TM	2.86
PF12846	AAA_10	1.43
PF13417	GST_N_3	0.71
PF07362	CcdA	0.71

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	4.29
COG5302	Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid	Mobilome: prophages, transposons [X]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.57 %
Unclassified	root	N/A	41.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.57 %
Unclassified	root	N/A	41.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.57 %
Unclassified	root	N/A	41.43 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.86 %
Unclassified	root	N/A	41.43 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	55.00 %
Unclassified	root	N/A	41.43 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	55.00 %
Unclassified	root	N/A	41.43 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	54.29 %
Unclassified	root	N/A	41.43 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	52.14 %
Unclassified	root	N/A	41.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.43 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	25.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.43 %
Sphingomonas sp. URHD0007	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	11.43 %
Sphingomonas sp. NSE70-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NSE70-1	6.43 %
Sphingomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	5.00 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	2.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001990\|JGI24737J22298_10223260	Not Available	556	Open in IMG/M
3300002568\|C688J35102_120972340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	3856	Open in IMG/M
3300003324\|soilH2_10228705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1069	Open in IMG/M
3300003848\|Ga0058694_1012589	Not Available	1744	Open in IMG/M
3300003848\|Ga0058694_1047508	Not Available	564	Open in IMG/M
3300004081\|Ga0063454_100086994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1431	Open in IMG/M
3300004114\|Ga0062593_101655571	Not Available	697	Open in IMG/M
3300004463\|Ga0063356_101670330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	951	Open in IMG/M
3300004479\|Ga0062595_102693038	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300005327\|Ga0070658_10132408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	2078	Open in IMG/M
3300005327\|Ga0070658_10165482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1857	Open in IMG/M
3300005327\|Ga0070658_10172351	All Organisms → cellular organisms → Bacteria → Proteobacteria	1818	Open in IMG/M
3300005327\|Ga0070658_10234126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1556	Open in IMG/M
3300005327\|Ga0070658_10738877	Not Available	855	Open in IMG/M
3300005329\|Ga0070683_100083063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	3000	Open in IMG/M
3300005329\|Ga0070683_100314721	All Organisms → cellular organisms → Bacteria → Proteobacteria	1490	Open in IMG/M
3300005329\|Ga0070683_100576237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NSE70-1	1076	Open in IMG/M
3300005336\|Ga0070680_100000897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	21044	Open in IMG/M
3300005336\|Ga0070680_100015944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	5902	Open in IMG/M
3300005336\|Ga0070680_100337829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1280	Open in IMG/M
3300005336\|Ga0070680_101472296	Not Available	590	Open in IMG/M
3300005339\|Ga0070660_100105872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2233	Open in IMG/M
3300005339\|Ga0070660_100217592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1552	Open in IMG/M
3300005339\|Ga0070660_100930679	Not Available	733	Open in IMG/M
3300005339\|Ga0070660_101438834	Not Available	586	Open in IMG/M
3300005339\|Ga0070660_101439723	Not Available	585	Open in IMG/M
3300005344\|Ga0070661_100706720	Not Available	822	Open in IMG/M
3300005345\|Ga0070692_11215823	Not Available	537	Open in IMG/M
3300005364\|Ga0070673_101119169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	736	Open in IMG/M
3300005366\|Ga0070659_100034855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	3917	Open in IMG/M
3300005366\|Ga0070659_100405021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NSE70-1	1152	Open in IMG/M
3300005366\|Ga0070659_101176454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	678	Open in IMG/M
3300005366\|Ga0070659_101337274	Not Available	636	Open in IMG/M
3300005366\|Ga0070659_101512645	Not Available	598	Open in IMG/M
3300005435\|Ga0070714_100150040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	2100	Open in IMG/M
3300005435\|Ga0070714_101547231	Not Available	648	Open in IMG/M
3300005455\|Ga0070663_100911828	Not Available	760	Open in IMG/M
3300005458\|Ga0070681_10891135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NSE70-1	808	Open in IMG/M
3300005458\|Ga0070681_11344310	Not Available	638	Open in IMG/M
3300005530\|Ga0070679_100026365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	5709	Open in IMG/M
3300005530\|Ga0070679_100624347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NSE70-1	1021	Open in IMG/M
3300005530\|Ga0070679_101533017	Not Available	614	Open in IMG/M
3300005547\|Ga0070693_100096806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1790	Open in IMG/M
3300005547\|Ga0070693_101008555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	630	Open in IMG/M
3300005563\|Ga0068855_100267392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1903	Open in IMG/M
3300005563\|Ga0068855_101528399	Not Available	685	Open in IMG/M
3300005563\|Ga0068855_101930513	Not Available	597	Open in IMG/M
3300005563\|Ga0068855_102563284	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
3300005564\|Ga0070664_100800521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	881	Open in IMG/M
3300005577\|Ga0068857_100720443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	949	Open in IMG/M
3300005578\|Ga0068854_100155661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1766	Open in IMG/M
3300005578\|Ga0068854_100277052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NSE70-1	1349	Open in IMG/M
3300005578\|Ga0068854_100282261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1337	Open in IMG/M
3300005614\|Ga0068856_100253474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1775	Open in IMG/M
3300005614\|Ga0068856_100574006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NSE70-1	1149	Open in IMG/M
3300005614\|Ga0068856_100676329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1053	Open in IMG/M
3300005614\|Ga0068856_101022724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	844	Open in IMG/M
3300005616\|Ga0068852_100494692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1217	Open in IMG/M
3300005616\|Ga0068852_102129725	Not Available	583	Open in IMG/M
3300005834\|Ga0068851_10763075	Not Available	599	Open in IMG/M
3300006358\|Ga0068871_101321392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	678	Open in IMG/M
3300006755\|Ga0079222_10240019	Not Available	1129	Open in IMG/M
3300006804\|Ga0079221_10140351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1249	Open in IMG/M
3300006804\|Ga0079221_10971641	Not Available	633	Open in IMG/M
3300006804\|Ga0079221_11280692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	575	Open in IMG/M
3300006806\|Ga0079220_10421758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	880	Open in IMG/M
3300009093\|Ga0105240_12452949	Not Available	539	Open in IMG/M
3300009551\|Ga0105238_11492779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	704	Open in IMG/M
3300010399\|Ga0134127_10017734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	5450	Open in IMG/M
3300012951\|Ga0164300_10054564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NSE70-1	1594	Open in IMG/M
3300012955\|Ga0164298_10357006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	928	Open in IMG/M
3300012960\|Ga0164301_10321881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1051	Open in IMG/M
3300013100\|Ga0157373_10129845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1772	Open in IMG/M
3300013100\|Ga0157373_10975004	Not Available	632	Open in IMG/M
3300013100\|Ga0157373_11083166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	601	Open in IMG/M
3300013100\|Ga0157373_11183651	Not Available	576	Open in IMG/M
3300013102\|Ga0157371_10307956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1147	Open in IMG/M
3300013102\|Ga0157371_10919441	Not Available	664	Open in IMG/M
3300013104\|Ga0157370_10927263	Not Available	790	Open in IMG/M
3300013104\|Ga0157370_11365344	Not Available	638	Open in IMG/M
3300013105\|Ga0157369_10572190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1167	Open in IMG/M
3300013105\|Ga0157369_11087025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NSE70-1	818	Open in IMG/M
3300013105\|Ga0157369_11896280	Not Available	605	Open in IMG/M
3300013307\|Ga0157372_12285084	Not Available	621	Open in IMG/M
3300020081\|Ga0206354_10462846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	971	Open in IMG/M
3300020610\|Ga0154015_1283512	Not Available	630	Open in IMG/M
3300021445\|Ga0182009_10618660	Not Available	581	Open in IMG/M
3300025321\|Ga0207656_10155853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1084	Open in IMG/M
3300025904\|Ga0207647_10108038	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300025904\|Ga0207647_10132863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1462	Open in IMG/M
3300025904\|Ga0207647_10232567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1060	Open in IMG/M
3300025909\|Ga0207705_10111890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	2018	Open in IMG/M
3300025909\|Ga0207705_10134163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1844	Open in IMG/M
3300025909\|Ga0207705_10141886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1794	Open in IMG/M
3300025909\|Ga0207705_10166320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1659	Open in IMG/M
3300025909\|Ga0207705_10969586	Not Available	657	Open in IMG/M
3300025909\|Ga0207705_11292827	Not Available	557	Open in IMG/M
3300025909\|Ga0207705_11384523	Not Available	535	Open in IMG/M
3300025912\|Ga0207707_10086347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NSE70-1	2742	Open in IMG/M
3300025912\|Ga0207707_11364962	Not Available	567	Open in IMG/M
3300025913\|Ga0207695_10243035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1701	Open in IMG/M
3300025917\|Ga0207660_10021265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4362	Open in IMG/M
3300025919\|Ga0207657_10091992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	2528	Open in IMG/M
3300025919\|Ga0207657_10529621	Not Available	922	Open in IMG/M
3300025921\|Ga0207652_10291017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1474	Open in IMG/M
3300025921\|Ga0207652_11517903	Not Available	574	Open in IMG/M
3300025924\|Ga0207694_11379114	Not Available	596	Open in IMG/M
3300025929\|Ga0207664_10712742	Not Available	902	Open in IMG/M
3300025932\|Ga0207690_11347754	Not Available	596	Open in IMG/M
3300025932\|Ga0207690_11652194	Not Available	535	Open in IMG/M
3300025933\|Ga0207706_10421876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1156	Open in IMG/M
3300025944\|Ga0207661_11584416	Not Available	599	Open in IMG/M
3300025945\|Ga0207679_10189504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1709	Open in IMG/M
3300025949\|Ga0207667_11970705	Not Available	545	Open in IMG/M
3300025981\|Ga0207640_10122688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1865	Open in IMG/M
3300026041\|Ga0207639_10082888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2543	Open in IMG/M
3300026067\|Ga0207678_10070950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2987	Open in IMG/M
3300026078\|Ga0207702_10231031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1729	Open in IMG/M
3300026078\|Ga0207702_12290274	Not Available	528	Open in IMG/M
3300026142\|Ga0207698_10465268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1224	Open in IMG/M
3300026142\|Ga0207698_12595875	Not Available	516	Open in IMG/M
3300027718\|Ga0209795_10113482	Not Available	773	Open in IMG/M
3300027766\|Ga0209796_10059935	Not Available	1149	Open in IMG/M
3300027766\|Ga0209796_10121615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	810	Open in IMG/M
3300027766\|Ga0209796_10201500	Not Available	631	Open in IMG/M
3300030515\|Ga0268254_10072633	Not Available	1084	Open in IMG/M
3300030515\|Ga0268254_10232290	Not Available	605	Open in IMG/M
3300031716\|Ga0310813_12276222	Not Available	513	Open in IMG/M
3300031938\|Ga0308175_100283862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1679	Open in IMG/M
3300031938\|Ga0308175_100453119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1353	Open in IMG/M
3300031938\|Ga0308175_100713380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1090	Open in IMG/M
3300031938\|Ga0308175_100721053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1084	Open in IMG/M
3300031938\|Ga0308175_101837224	Not Available	679	Open in IMG/M
3300031939\|Ga0308174_10493304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1001	Open in IMG/M
3300031996\|Ga0308176_10749697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1016	Open in IMG/M
3300032074\|Ga0308173_10330241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1321	Open in IMG/M
3300033412\|Ga0310810_10941254	Not Available	750	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	61.43%
Environmental	Environmental	38.57%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	61.43%
Terrestrial	Environmental → Terrestrial	38.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.00%
Phylloplane	Host-Associated → Plants → Phylloplane	5.71%
Roots	Host-Associated → Plants → Roots	0.71%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	23.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	20.00%
Loam	Environmental → Terrestrial → Soil → Loam	18.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.43%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	5.71%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	23.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	20.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.43%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.43%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.71%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	5.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.43%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.71%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	22.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	19.29%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	12.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	8.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.86%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.14%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.71%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.71%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.71%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003848	Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027766	Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (SPAdes)	Host-Associated	Open in IMG/M
3300030515	Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (v2)	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24737J22298_102232601	3300001990	Corn Rhizosphere	VDNYKGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVHVIDADTFEISTTGERLRRG
C688J35102_1209723404	3300002568	Soil	VESYSGRMLVEDASGARFYVHEYSGRRTFLRVRRYMLDTGEPVRRVDAKSFAIVATGERLLRVDGD*
soilH2_102287051	3300003324	Sugarcane Root And Bulk Soil	LESYFGRVLVEDASGSRVYVHEYRGRRTFRRFNRYMLDTGEHVRRVDADNFEIVGTGERLVRVEEE*
Ga0058694_10125891	3300003848	Agave	VESYSGRILVEDADGSRFYVHEYSGRRTFIRVRRYMLETGEDVRRVNSVTFEIVRTGEQLTRVGDG*
Ga0058694_10475081	3300003848	Agave	VESYSGRILVEDPSGARCYVYEYRGRRTFFRVNRYMLDTGETVRRVDGDTFEIATTGEKLTRVDD*
Ga0063454_1000869943	3300004081	Soil	MLVEDASGARFYVHEYSGRRTFLRVRRYMLDTGERVRRVDAKSFAIVATGERLLRVDGD*
Ga0062593_1016555711	3300004114	Soil	VESYSGRILVEDASGARFYVHEYRGRRTFLRVRRFMLDTGEQVRRVDARSFVIAATGERLTRVPEE*
Ga0063356_1016703302	3300004463	Arabidopsis Thaliana Rhizosphere	VESYSGRILVEDATGARFYVHEYRGRRTFLRVRRYMLDTGETVRREGPRAFVIVATGERLMRVDDQ*
Ga0062595_1026930381	3300004479	Soil	LENYSGRTLVEDASGARFYVHEYRRRRYVLAVKRHVLDTGETVRQVDRNTFEIVHSGERLVRVPEG*
Ga0070658_101324083	3300005327	Corn Rhizosphere	VESYSGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVRAVDADTFEISTTGERLRRVPEE*
Ga0070658_101654823	3300005327	Corn Rhizosphere	VERYTGRILVEDAEGVQQFVHEFRGRRTFLPVKRYMLDTGEHVRRIDERTFVITATGERLTRVDNSD*
Ga0070658_101723512	3300005327	Corn Rhizosphere	VESYSGCILVEDASGSRVCVFEYRARLLFLPVRRYVLDTGEPVRRLDRRTFEILGTGERLVRADD*
Ga0070658_102341262	3300005327	Corn Rhizosphere	LESYSGRVLVEDASGARIYVHEYRGRRTLLRISRYMLDTGEHVRRVDANSFEVVATGERLLRVAEE*
Ga0070658_107388771	3300005327	Corn Rhizosphere	VESYSGGVLVEDASGARFYVHEYRGRRTFLPTRRYMLDTGEQVRRIDRRTFEIVSTGERLMRVQEE*
Ga0070683_1000830633	3300005329	Corn Rhizosphere	LESYSGGILVEDAEGSRFHVHEYRGRRTLFRARRYVLDTGESVRRLDAHTFVVERTGERLMRVYDG*
Ga0070683_1003147213	3300005329	Corn Rhizosphere	LSRIVREKDGLLDSYSGRVLVEDASGARFYVHEYRGRRMVLPVKRYMLDTGEQVRRIDGKSFEIVATGERLIRVAGD*
Ga0070683_1005762372	3300005329	Corn Rhizosphere	VDNYKGRILVEDSSGARFYVHAYRGRRTFLRMKRYVLDTGEAVHVIDADTFEISTTGERLRRVAEE*
Ga0070680_1000008975	3300005336	Corn Rhizosphere	VESYSGHILVEDASGTRFYVHEYRGRRTFFRTKRYMLDTGESVRRIDDRNFVIEKTGETLVRVDDG*
Ga0070680_1000159441	3300005336	Corn Rhizosphere	VESYSGHILVEDASGARFYVHQYRGRRTLFRTTRYMLDTGEAVRRVDDRHFVIEKTGEMLERVDED*
Ga0070680_1003378291	3300005336	Corn Rhizosphere	VESYSGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVRVVDADTFEISTTGERLRRVPEE*
Ga0070680_1014722962	3300005336	Corn Rhizosphere	GPVESYSGRILVEDASGARFYVHEYRGRRTFLRIRRFVLDTGEPVRRAGARGFVIDATGELLTRVDEQ*
Ga0070660_1001058723	3300005339	Corn Rhizosphere	VESYSGRILVEDASGARFYVHEYRGRRTLVRTRRYMLDTGESVRREGERTFVIEKTGEKLVRVDGD*
Ga0070660_1002175922	3300005339	Corn Rhizosphere	VDNYKGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVHVIDADTFEISTTGERLRRVAEE*
Ga0070660_1009306792	3300005339	Corn Rhizosphere	VESYSGRILVEDATGARFYVHEYRGRRTFLRVRRYMLDTGEPVRRIDRSTFAIIATGERLARVEES*
Ga0070660_1014388342	3300005339	Corn Rhizosphere	LVEDASGARFYVHEYRRSRIVLPVRRHVLDTGEKVRQVDRHTFEIVHTGERLVRIPEG*
Ga0070660_1014397232	3300005339	Corn Rhizosphere	VESYSGRILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKRNFEIATTGERLVRVDEE*
Ga0070661_1007067201	3300005344	Corn Rhizosphere	VESYSGHILVEDASGTRFYVHEYRGRRTFFRTKRYMLDTGESVRRIDDRNFVIEKTGETLVRVNDG*
Ga0070692_112158231	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	SRFYVHEYHGRRTFLRIKRYMLETGEQVRRIDPRTFEIVRTGERLTRVEDQ*
Ga0070673_1011191692	3300005364	Switchgrass Rhizosphere	VESYSGRILVEDATGARFYVHEYRGRRTFLRVRRYMLDTGEPVRRVDAHSFVIEATGEKLTRVEEE*
Ga0070659_1000348552	3300005366	Corn Rhizosphere	VESYLGRILVEDAHGARFYVHEYRGRRTFLRVRRYMLDTGEQVRSTGSGTFVIVDTGELLTRVEEE*
Ga0070659_1004050211	3300005366	Corn Rhizosphere	VESYSGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEPVRVVDAGTFEISTTGERLRRVPEE*
Ga0070659_1011764541	3300005366	Corn Rhizosphere	VESYSGRILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIATTGELLVRVDEE*
Ga0070659_1013372741	3300005366	Corn Rhizosphere	YSGGVLVEDASGARFYVHEYRGRRTFLPTRRYMLDTGEQVRRIDRRTFEIVSTGERLMRVEEE*
Ga0070659_1015126452	3300005366	Corn Rhizosphere	LESYSGRILVEDASGARFYVHEYRRWRIILPVSRHVLDTGEKVRQVDRHTFEIEHTGERLVRVAED*
Ga0070714_1001500401	3300005435	Agricultural Soil	DGSRFYVHEYRGRRTFLRMKRYMLETGEEVRRIDARSFVIVRTGERLTRAEGD*
Ga0070714_1015472311	3300005435	Agricultural Soil	VESYSGRILVEDASGTRLFVHEYVGRRTLFRTRRYMLDTGEAVRRVDAHSFVIEKTGEALVRVDED*
Ga0070663_1009118282	3300005455	Corn Rhizosphere	VESYSGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVRVIDADTFEISTTGERLRRVPEE*
Ga0070681_108911352	3300005458	Corn Rhizosphere	VESYSGHILVEDASGTRFYVHEYRGRRTFFRTKRYMLDTGESVRRIDDRNFVIEKTGETLVRVND
Ga0070681_113443101	3300005458	Corn Rhizosphere	VESYSGRILVEDASGARFYVHEYRGRRTFLRVRRFMLDTGEDVRRVDARTFVIAATGERLTRVPEE*
Ga0070679_1000263653	3300005530	Corn Rhizosphere	VESYSGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVRVVDAGTFEISTTGERLRRVPEE*
Ga0070679_1006243471	3300005530	Corn Rhizosphere	VESYSGRILVEDASGARFYVHEYRGRRTLVRTRRYMLDTGESVRREGERTFVIEKTGEKLVRVDED*
Ga0070679_1015330172	3300005530	Corn Rhizosphere	VERYTGRILVEDAEGVQQFVHEFRGRRTFLPVKRYMLDTGEHVRRIDERTFVITATGERL
Ga0070693_1000968063	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	PNRPHSGSGLLENYSGRTLVEDASGARFYVHEYRRRPYVLAVKRHVLDTGETVRQVDRHTFEIVHTGERLVRVPEG*
Ga0070693_1010085551	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	ASGARFYVHEYRGRRTFLRVRRFMLDTGEQVRRVDARSFVIAATGERLTRVPEE*
Ga0068855_1002673922	3300005563	Corn Rhizosphere	VESYSGRILVEDASGARFYVHEYRGRRTLLRTRRYMLDTGESVRRVDDNTFVIERTGETLVRLDEA*
Ga0068855_1015283992	3300005563	Corn Rhizosphere	RILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVHVIDADTFEISTTGERLRRVAEE
Ga0068855_1019305131	3300005563	Corn Rhizosphere	EDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVRVVDAGTFEISTTGERLRRVPEE*
Ga0068855_1025632842	3300005563	Corn Rhizosphere	VESYSGHILVEDASGARFYVHEYRGRRTFFRASRYMLDTGEPVRRIDSRTFQIATTGELLTRVDE*
Ga0070664_1008005212	3300005564	Corn Rhizosphere	VESYSGRILVEDADGSRFYVHEYHGRRTFLRIKRYMLETGEQVRRIDPRTFEIVRTGERLTRVEDQ*
Ga0068857_1007204432	3300005577	Corn Rhizosphere	LENYSGRILVEDASGARFYVHEYRRRRIVLPVRRHVLDTGEKVREVDRLTFEIVHTGERLVRVPEE*
Ga0068854_1001556613	3300005578	Corn Rhizosphere	LDSYSGRVLVEDASGARFYVHEYRGRRMVLPVKRYMLDTGEQVRRIDGKSFEIVATGERLIRVAGD*
Ga0068854_1002770522	3300005578	Corn Rhizosphere	VESYSGRILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKRNFEIATTGERLVRVKDE*
Ga0068854_1002822611	3300005578	Corn Rhizosphere	YSGRVLVEDASGARIYVHEYRGRRTLLRISRYMLDTGEHVRRVDANSFEVVATGERLLRVAEE*
Ga0068856_1002534742	3300005614	Corn Rhizosphere	VESYSGHILVEDASGARFYVHQYRGRRTLFRTTRYMLDTGEAVRRVDDRHFVIEKTGETLERVDED*
Ga0068856_1005740061	3300005614	Corn Rhizosphere	VESYSGGVLVEDASGARFYVHEYRGRRTFLPTRRYMLDTGEQVRRIDRRTFEIVSTGERLMRVEEE*
Ga0068856_1006763293	3300005614	Corn Rhizosphere	VECYSGRILVEDASGARFYVHEYRGRRTLVRTRRYMLDTGESVRREGERTFVIEKTGEKLVRVDED*
Ga0068856_1010227241	3300005614	Corn Rhizosphere	SGARFYVHEYRRRRIVLPVRRHVLDTGEKVRPVDRHTFEIGHTGERLVRVPEG*
Ga0068852_1004946922	3300005616	Corn Rhizosphere	LENYSGRTLVEDASGARFYVHEYRRRPYVLAVKRHVLDTGETVRQVDRHTFEIVHTGERLVRVPEG*
Ga0068852_1021297251	3300005616	Corn Rhizosphere	VESYSGGVLVEDASGARFYVHEYRGRRTFLPTRRYMLDTGEQVRRIDRRTFEIVSTGERLMRVE
Ga0068851_107630752	3300005834	Corn Rhizosphere	VESYSGHILVEDASGTRFYVHEYRGRRTFFRTKRYMLDTGESVRRIDDRNFVIEKTGET
Ga0068871_1013213921	3300006358	Miscanthus Rhizosphere	VESYSGRILVEDATGARFYVDEYRGRRTFLPVRRYMLDTGEPVRRVDGTCFAIVATGEKLTRVEDD*
Ga0079222_102400192	3300006755	Agricultural Soil	LESYSGRILVEDASGARFYVHEYRGRRRIMPVKRHMLDTGEHVRQLDRHTFEIEKTGERLVRVAEE*
Ga0079221_101403512	3300006804	Agricultural Soil	LESYSGRVLVEDASGARIYVHEYRGRRTLLRISRYMLDTGEHVRRVDANSFEIVATGERLVRVAEE*
Ga0079221_109716411	3300006804	Agricultural Soil	PVDNYKGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVHVIDADTFEISTTGERLRRVAEE*
Ga0079221_112806921	3300006804	Agricultural Soil	VESYSGRILVEDPSGARCYVYEYRGRRTFFRVNRYMLDTGETVRRIDARTFEIATTGEKLTRVDD*
Ga0079220_104217582	3300006806	Agricultural Soil	VEDASGARFYVHEYRGRRIIMPVKRHMLDTGEHVRQVDRHTFEIEKTGERLVRVAEE*
Ga0105240_124529492	3300009093	Corn Rhizosphere	LESYSGGILVEDAEGSRFHVHEYRGRRTLFRARRYVLDTGESVRRIDAHTFVVERTGERLMRVYDG*
Ga0105238_114927792	3300009551	Corn Rhizosphere	LESYFGRVLVEDASGARLYVHEYRGRRMVLPVKRYMLDTGEQVRRVDNGSFEIIKTGERLTCVAEE*
Ga0134127_100177346	3300010399	Terrestrial Soil	LESYSGGILVEDAEGSRFHVHEYRGRRTLFRARRYVLDTGESVRRLDAHTFVVERTGERLTRVYDG*
Ga0164300_100545641	3300012951	Soil	VESYSGRILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIATTGERLVRVDEE*
Ga0164298_103570062	3300012955	Soil	VESYSGRILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIATTGERLVRVKDE*
Ga0164301_103218812	3300012960	Soil	VESYSGRILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIATTGERLVRVDED*
Ga0157373_101298452	3300013100	Corn Rhizosphere	VEDASGARFYVHEYRRRRIVLPVRRHVLDTGEKVRQVDRHTFEIVHTGERLVRVPEG*
Ga0157373_109750042	3300013100	Corn Rhizosphere	VESYSGRILVEDASGARFYVHEYRGRRTFLRIRRFMLDTGEPVRRTGPREFVIDATGELLTRVDEQ*
Ga0157373_110831662	3300013100	Corn Rhizosphere	VERYSGRILVEDAEGVRHFVHEYRGRRTFLAVKRYMLDTGEQVRRLDDRTFIISATGE
Ga0157373_111836511	3300013100	Corn Rhizosphere	GRILVEDAEGVQQFVHEFRGRRTFLPVKRYMLDTGEHVRRIDERTFVITATGERLTRVDNSD*
Ga0157371_103079563	3300013102	Corn Rhizosphere	LVEDASGARFYVHEYRGRRTLVRTRRYMLDTGESVRREGERTFVIEKTGEKLVHVDED*
Ga0157371_109194412	3300013102	Corn Rhizosphere	VERYSGRILVEDAEGVRHFVHEYRGRRTFLAVKRYMLDTGEQVRRLDDRTFVISATGERLTRVDNSS*
Ga0157370_109272632	3300013104	Corn Rhizosphere	QGEGGPVESYSGRILVEDASGARFYVHEYRGRRTFLRIRRLVLDTGEPVRRAGARGLVIDATGELLTRVDE*
Ga0157370_113653442	3300013104	Corn Rhizosphere	SGSGLLENYSGRILVEDASGARFYVHEYRRRRIVLPVRRHVLDTGEKVREVDRHTFEIVHTGERLARVPEE*
Ga0157369_105721901	3300013105	Corn Rhizosphere	SSAGERTLESYSGGILVEDAEGSRFHVHEYRGRRTLFRARRYVLDTGESVRRLDAHTFVVERTGERLMRVYDG*
Ga0157369_110870252	3300013105	Corn Rhizosphere	VESYSARILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKRNFEIATTGERLVRVDEE*
Ga0157369_118962802	3300013105	Corn Rhizosphere	GSGLLENYSGRTLVEDASGARFYFHEYQRRRIVLPVRRHVLDTGEKVRQVDRHTFEIVHTGERLVRVPEG*
Ga0157372_122850842	3300013307	Corn Rhizosphere	SYSGRVLVEDASGARIYVHEYRGRRTLLRISRYMLDTGEHVRRVDANSFEVVATGERLLRVAEE*
Ga0206354_104628461	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	PVDNYKGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVRAVDADTFEISTTGERLRRVPEE
Ga0154015_12835121	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	LESYSGGILVEDAEGSRFHVHEYRGRRTLFRARRYVLDTGESVRRLDAHTFVVERTGERLMRVYDG
Ga0182009_106186601	3300021445	Soil	SGRILVEDASGARFYVHEYRRKRIVLPVRRHVLDTGEKVRQVDRHTFEIVHTGERLVRVPEG
Ga0207656_101558533	3300025321	Corn Rhizosphere	SGARFYVHEYRGRRMVLPVKRYMLDTGEQVRRIDGKSFEIVATGERLIRVAGD
Ga0207647_101080383	3300025904	Corn Rhizosphere	VERYTGRILVEDAEGVQQFVHEFRGRRTFLPVKRYMLDTGEHVRRIDERTFVITATGERLTRVDNSD
Ga0207647_101328632	3300025904	Corn Rhizosphere	VESYSGRILVEDASGARFYVHEYRGRRTFLRVRRFMLDTGEQVRRVDARSFVIAATGERLTRVPEE
Ga0207647_102325673	3300025904	Corn Rhizosphere	VESYSGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVRVVDADTFEISTTGERLRRVPEE
Ga0207705_101118903	3300025909	Corn Rhizosphere	VESYSGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVRAVDADTFEISTTGERLRRVPEE
Ga0207705_101341633	3300025909	Corn Rhizosphere	VDNYKGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVHVIDADTFEISTTGERLRRVAEE
Ga0207705_101418862	3300025909	Corn Rhizosphere	LESYSGRVLVEDASGARIYVHEYRGRRTLLRISRYMLDTGEHVRRVDANSFEVVATGERLLRVAEE
Ga0207705_101663201	3300025909	Corn Rhizosphere	ARFYVHEYRGRRMVLPVKRYMLDTGEQVRRIDGKSFEIVATGERLIRVAGD
Ga0207705_109695862	3300025909	Corn Rhizosphere	RGSGLVESYSGGVLVEDASGARFYVHEYRGRRTFLPTRRYMLDTGEQVRRIDRRTFEIVSTGERLMRVQEE
Ga0207705_112928272	3300025909	Corn Rhizosphere	PHSGSGLLENYSGRTLVEDASGARFYVHEYRRRPYVLAVKRHVLDTGETVRQVDRHTFEIVHTGERLVRVPEG
Ga0207705_113845231	3300025909	Corn Rhizosphere	VESYSGCILVEDASGSRVCVFEYRARLLFLPVRRYVLDTGEPVRRLDRRTFEILGTGERLVRADD
Ga0207707_100863472	3300025912	Corn Rhizosphere	VESYSGHILVEDASGTRFYVHEYRGRRTFFRTKRYMLDTGESVRRIDDRNFVIEKTGETLVRVDDG
Ga0207707_113649622	3300025912	Corn Rhizosphere	VESYSGRILVEDATGARFYVHEYRGRRTFLRVRRYMLDTGEPVRRIDRSTFAIIATGERLARVEES
Ga0207695_102430353	3300025913	Corn Rhizosphere	LDSYSGRVLVEDASGARFYVHEYRGRRMVLPVKRYMLDTGEQVRRIDGKSFEIVATGERLIRVAGD
Ga0207660_100212653	3300025917	Corn Rhizosphere	VESYSGHILVEDASGARFYVHQYRGRRTLFRTTRYMLDTGEAVRRVDDRHFVIEKTGEMLERVDED
Ga0207657_100919923	3300025919	Corn Rhizosphere	VESYSGRILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKRNFEIATTGERLVRVDEE
Ga0207657_105296211	3300025919	Corn Rhizosphere	VESYSGRILVEDASGARFYVHEYRGRRTLVRTRRYMLDTGESVRREGERTFVIEKTGEKLVRVDGD
Ga0207652_102910173	3300025921	Corn Rhizosphere	VESYSGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVRVVDAGTFEISTTGERLRRVPEE
Ga0207652_115179032	3300025921	Corn Rhizosphere	VESYSGRILVEDASGARFYVHEYRGRRTLVRTRRYMLDTGESVRREGERTFVIEKTGEKLLRVDED
Ga0207694_113791142	3300025924	Corn Rhizosphere	LESYFGRVLVEDASGARLYVHEYRGRRMVLPVKRYMLDTGEQVRRVDNGSFEIIKTGERLTCVAEE
Ga0207664_107127421	3300025929	Agricultural Soil	VDNYKGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVHVIDADTFEISTTGERLRRVPEE
Ga0207690_113477541	3300025932	Corn Rhizosphere	LVEDASGARFYVHEYRRRPYVLAVKRHVLDTGETVRQVDRHTFEIVHTGERLVRVPEG
Ga0207690_116521941	3300025932	Corn Rhizosphere	VESYSGRILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIATTGELLVRVDEE
Ga0207706_104218761	3300025933	Corn Rhizosphere	LSRIVREKDGLLDSYSGRVLVEDASGARFYVHEYRGRRMVLPVKRYMLDTGEQVRRIDGKSFEIVATGERLIRVAGD
Ga0207661_115844161	3300025944	Corn Rhizosphere	IRLSRIVREKDGLLDSYSGRVLVEDASGARFYVHEYRGRRMVLPVKRYMLDTGEQVRRIDGKSFEIVATGERLIRVAGD
Ga0207679_101895041	3300025945	Corn Rhizosphere	LENYSGRTLVEDASGARFYVHEYRRRRIVLPVRRHVLDTGEKVRQVDRHTFEIVHTGERLVRVPEG
Ga0207667_119707051	3300025949	Corn Rhizosphere	VERYTGRILVEDAEGVQQFVHEFRGRRTFLPVKRYMLDTGEHVRRIDE
Ga0207640_101226882	3300025981	Corn Rhizosphere	VESYSGRILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIATTGERLVRVDEE
Ga0207639_100828882	3300026041	Corn Rhizosphere	LESYSGRILVEDASGARFYVHEYRRWRIILPVSRHVLDTGEKVRQVDRHTFEIEHTGERLVRVAED
Ga0207678_100709502	3300026067	Corn Rhizosphere	VESYSGRILVEDSSGARFYVHEYRGRRTFLRMKRYVLDTGEAVRVIDADTFEISTTGERLRRVPEE
Ga0207702_102310312	3300026078	Corn Rhizosphere	VESYSGHILVEDASGARFYVHQYRGRRTLFRTTRYMLDTGEAVRRVDDRHFVIEKTGETLERVDED
Ga0207702_122902741	3300026078	Corn Rhizosphere	VESYSGGVLVEDASGARFYVHEYRGRRTFLPTRRYMLDTGEQVRRIDRRTFEIVSTGERLMRVEEE
Ga0207698_104652682	3300026142	Corn Rhizosphere	LENYSGRTLVEDASGARFYVHEYRRRPYVLAVKRHVLDTGETVRQVDRHTFEIVHTGERLVRVPEG
Ga0207698_125958752	3300026142	Corn Rhizosphere	VESYSGGVLVEDASGARFYVHEYRGRRTFLRMKRYVLDTGEAVHVIDADTFEISTTGERLRRVAEE
Ga0209795_101134822	3300027718	Agave	VESYSGRILVEDPSGARCYVYEYRGRRTFFRVNRYMLDTGETVRRIDARTFEIATTGEKLTRVDD
Ga0209796_100599351	3300027766	Agave	VESYSGRILVEDADGSRFYVHEYSGRRTFLRVRRYMLETGEEVRRLDARTFEIARTGERLTR
Ga0209796_101216151	3300027766	Agave	VESYSGRILVEDPSGARCYVYEYRGRRTFFRVNRYMLDTGETVRRVDGDTFEIATTGEKLTRVDD
Ga0209796_102015002	3300027766	Agave	VESYSGRILVEDADGSRFYVHEYHGRRTFLRIKRYMLETGEQVRRIDARTFEIVRTGE
Ga0268254_100726332	3300030515	Agave	VESYSGRILVEDADGSRFYVHEYSGRRTFIRVRRYMLETGEEVRRVNSGTFEIVRTGEQLTRVGDG
Ga0268254_102322901	3300030515	Agave	VESYSGRILVEDADGSRFYVHEYSGRRTFIRVRRYMLETGEDVRRVNSVTFEIVRTGEQLTRVGDG
Ga0310813_122762221	3300031716	Soil	SGSGLLENYSGRTLVEDASGARFYVHEYRRRRIVLPVRRHVLDTGEKVRQVDRHTFEIVHTGERLVRVPEG
Ga0308175_1001401994	3300031938	Soil	AGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIATTGERLVRVDEE
Ga0308175_1002838623	3300031938	Soil	VESYKGRILVEDASGARFYVHEYRGRRTLIPVKRHILDTGEHVRRVDRRTFEIMQTGELLVRVAEE
Ga0308175_1004531192	3300031938	Soil	VESYSGRILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIATTGERLVRVKDE
Ga0308175_1007133802	3300031938	Soil	VESYSGHILVEDASGTRFYVHQYRGRRTLLRTTRYMLDTGESVRRVDDRNFVIEKTGETLVRVDES
Ga0308175_1007210532	3300031938	Soil	VESYSGRILVEDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIVTTGERLVRVDED
Ga0308175_1018372242	3300031938	Soil	VESYSGHILVEDASGARFYVHEYRGRRTFFRASRYMLDTGEPVRRIDSRTFQIATTGELLTRVDE
Ga0308175_1026354531	3300031938	Soil	AGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIVTTGERLIRVDEE
Ga0308174_104933043	3300031939	Soil	MRGSGLVESYSGRILVEDASGTRFYVHEYRGRRTLVRTRRYMLDTGESVRRVDDRTFVIEKTGETLARVDQD
Ga0308176_103781681	3300031996	Soil	AGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIATTGERLVRVKDE
Ga0308176_107496973	3300031996	Soil	EDGAGARFYVHEYRGRRTFLLVRRYMLDTGEPVRRIDKQNFEIATTGERLVRVDED
Ga0308173_103302413	3300032074	Soil	SGRILVEDASGTRFYVHEYRGRRTLVRTRRYMLDTGESVRRVDDRTFVIEKTGETLARVDQD
Ga0310810_109412542	3300033412	Soil	LENYSGRILVEDASGARFYVHEYRRSRIVLPVRRHVLDTGEKVRQVDRHTFEIVHTGERLVRIP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054073

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences