Metagenome / Metatranscriptome Family F053517

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F053517
Family Type	Metagenome / Metatranscriptome
Number of Sequences	141
Average Sequence Length	64 residues
Representative Sequence	MVDADKIACCNQCKQPLIEIDNRGKRLKGCLTCNLWSTADGKRWKRLSEEDLRAIHQLVRHR
Number of Associated Samples	127
Number of Associated Scaffolds	141

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.38 %
% of genes near scaffold ends (potentially truncated)	41.13 %
% of genes from short scaffolds (< 2000 bps)	88.65 %
Associated GOLD sequencing projects	121
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.035 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.348 % of family members)
Environment Ontology (ENVO)	Unclassified (21.986 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (29.787 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.33% β-sheet: 21.11% Coil/Unstructured: 65.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 141 Family Scaffolds
PF01909	NTP_transf_2	7.09
PF04448	DUF551	2.13
PF00072	Response_reg	1.42
PF07369	DUF1488	1.42
PF13460	NAD_binding_10	1.42
PF04366	Ysc84	1.42
PF01527	HTH_Tnp_1	1.42
PF05532	CsbD	0.71
PF00571	CBS	0.71
PF01741	MscL	0.71
PF00892	EamA	0.71
PF09361	Phasin_2	0.71
PF03239	FTR1	0.71
PF05988	DUF899	0.71
PF05013	FGase	0.71
PF00313	CSD	0.71
PF07690	MFS_1	0.71
PF11755	DUF3311	0.71
PF00459	Inositol_P	0.71

COG ID	Name	Functional Category	% Frequency in 141 Family Scaffolds
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	1.42
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.71
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.71
COG3741	N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.71
COG3931	Predicted N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.71
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.04 %
Unclassified	root	N/A	4.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.04 %
Unclassified	root	N/A	4.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.04 %
Unclassified	root	N/A	4.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	90.78 %
Unclassified	root	N/A	4.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	90.78 %
Unclassified	root	N/A	4.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.64 %
Unclassified	root	N/A	4.96 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.71 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %

Name	Rank	Taxonomy	Distribution
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	4.96 %
Unclassified	root	N/A	4.96 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.84 %
Alphaproteobacteria bacterium RBG_16_64_48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RBG_16_64_48	0.71 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.96 %
Unclassified	root	N/A	4.96 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2.84 %
Alphaproteobacteria bacterium RBG_16_64_48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RBG_16_64_48	0.71 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4.96 %
Unclassified	root	N/A	4.96 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	2.13 %
Methyloceanibacter methanicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	0.71 %
Alphaproteobacteria bacterium RBG_16_64_48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RBG_16_64_48	0.71 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459019\|G14TP7Y01DVA3J	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
2170459024\|GZRSKLJ02IVGLU	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
2228664021\|ICCgaii200_c0918534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1310	Open in IMG/M
3300000878\|AL9A1W_1089658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	958	Open in IMG/M
3300000890\|JGI11643J12802_12326631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300001536\|A1565W1_10898712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300002120\|C687J26616_10002133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8259	Open in IMG/M
3300002243\|C687J29039_10349379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300003990\|Ga0055455_10030000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1400	Open in IMG/M
3300003996\|Ga0055467_10102437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	815	Open in IMG/M
3300004006\|Ga0055453_10294496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300004019\|Ga0055439_10064179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1026	Open in IMG/M
3300004024\|Ga0055436_10145655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	720	Open in IMG/M
3300004024\|Ga0055436_10263633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	552	Open in IMG/M
3300004114\|Ga0062593_101931790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	653	Open in IMG/M
3300004463\|Ga0063356_102314477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	820	Open in IMG/M
3300004479\|Ga0062595_100274207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1115	Open in IMG/M
3300004480\|Ga0062592_101876154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300004481\|Ga0069718_15660834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1840	Open in IMG/M
3300005045\|Ga0071328_111717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3212	Open in IMG/M
3300005105\|Ga0066812_1003540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	881	Open in IMG/M
3300005169\|Ga0066810_10081095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	689	Open in IMG/M
3300005218\|Ga0068996_10035880	Not Available	901	Open in IMG/M
3300005294\|Ga0065705_10761852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	625	Open in IMG/M
3300005336\|Ga0070680_101270470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300005353\|Ga0070669_101015750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300005434\|Ga0070709_10809028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	736	Open in IMG/M
3300005434\|Ga0070709_11314179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M
3300005439\|Ga0070711_100163001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1692	Open in IMG/M
3300005439\|Ga0070711_101923456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300005457\|Ga0070662_100529269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	986	Open in IMG/M
3300005468\|Ga0070707_101799532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300005518\|Ga0070699_100476873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1132	Open in IMG/M
3300005564\|Ga0070664_101709747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	596	Open in IMG/M
3300005616\|Ga0068852_102554950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M
3300006047\|Ga0075024_100879668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300006057\|Ga0075026_100258519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	937	Open in IMG/M
3300006172\|Ga0075018_10771704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300006175\|Ga0070712_100835968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	791	Open in IMG/M
3300006354\|Ga0075021_10128724	Not Available	1519	Open in IMG/M
3300006792\|Ga0075530_1122305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	839	Open in IMG/M
3300006806\|Ga0079220_10030390	Not Available	2387	Open in IMG/M
3300006844\|Ga0075428_100776485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1019	Open in IMG/M
3300006845\|Ga0075421_100962034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	969	Open in IMG/M
3300006852\|Ga0075433_10243743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1595	Open in IMG/M
3300006852\|Ga0075433_11849159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300006871\|Ga0075434_101387877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300006871\|Ga0075434_101726313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	633	Open in IMG/M
3300006904\|Ga0075424_100546562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1237	Open in IMG/M
3300006914\|Ga0075436_100122334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1821	Open in IMG/M
3300007076\|Ga0075435_101805889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	537	Open in IMG/M
3300009094\|Ga0111539_10873448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1046	Open in IMG/M
3300009094\|Ga0111539_11324369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	836	Open in IMG/M
3300009101\|Ga0105247_11026039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300009147\|Ga0114129_11670606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	778	Open in IMG/M
3300009162\|Ga0075423_10262169	All Organisms → cellular organisms → Bacteria	1810	Open in IMG/M
3300009818\|Ga0105072_1083994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	628	Open in IMG/M
3300009818\|Ga0105072_1110492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	557	Open in IMG/M
3300009821\|Ga0105064_1010297	Not Available	1660	Open in IMG/M
3300010166\|Ga0126306_11222223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300010397\|Ga0134124_10307843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1479	Open in IMG/M
3300011998\|Ga0120114_1007775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2549	Open in IMG/M
3300012003\|Ga0120163_1109426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300012010\|Ga0120118_1013082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2347	Open in IMG/M
3300012355\|Ga0137369_10133815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1988	Open in IMG/M
3300012905\|Ga0157296_10402400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300012960\|Ga0164301_10356696	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300012960\|Ga0164301_10517761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	864	Open in IMG/M
3300012961\|Ga0164302_10323092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1019	Open in IMG/M
3300012961\|Ga0164302_10698242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	751	Open in IMG/M
3300012985\|Ga0164308_10194141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1541	Open in IMG/M
3300012986\|Ga0164304_10428478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	947	Open in IMG/M
3300012986\|Ga0164304_10709395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	765	Open in IMG/M
3300012988\|Ga0164306_10473494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	958	Open in IMG/M
3300013501\|Ga0120154_1123436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	589	Open in IMG/M
3300013770\|Ga0120123_1004180	All Organisms → cellular organisms → Bacteria	2691	Open in IMG/M
3300014268\|Ga0075309_1123788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300014317\|Ga0075343_1188140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300014317\|Ga0075343_1205570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300014320\|Ga0075342_1001816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	4134	Open in IMG/M
3300014321\|Ga0075353_1065466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	786	Open in IMG/M
3300014827\|Ga0120171_1104933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	707	Open in IMG/M
3300014968\|Ga0157379_10296228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1474	Open in IMG/M
3300015200\|Ga0173480_10742727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	620	Open in IMG/M
3300015371\|Ga0132258_11355402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1797	Open in IMG/M
3300015374\|Ga0132255_100038243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6150	Open in IMG/M
3300016404\|Ga0182037_10931070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	755	Open in IMG/M
3300017822\|Ga0187802_10018159	All Organisms → cellular organisms → Bacteria	2385	Open in IMG/M
3300017823\|Ga0187818_10304943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	700	Open in IMG/M
3300017926\|Ga0187807_1163357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300017928\|Ga0187806_1352587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300017932\|Ga0187814_10011077	Not Available	3510	Open in IMG/M
3300017932\|Ga0187814_10038494	All Organisms → cellular organisms → Bacteria	1770	Open in IMG/M
3300017937\|Ga0187809_10014413	Not Available	2572	Open in IMG/M
3300017993\|Ga0187823_10398617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300017995\|Ga0187816_10030168	Not Available	2193	Open in IMG/M
3300018027\|Ga0184605_10321586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	699	Open in IMG/M
3300018028\|Ga0184608_10124409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1096	Open in IMG/M
3300018061\|Ga0184619_10184111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	958	Open in IMG/M
3300018075\|Ga0184632_10164451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	979	Open in IMG/M
3300018076\|Ga0184609_10056412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1688	Open in IMG/M
3300018429\|Ga0190272_12416329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300018469\|Ga0190270_10575184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1092	Open in IMG/M
3300019356\|Ga0173481_10806590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300021081\|Ga0210379_10402461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	605	Open in IMG/M
3300025159\|Ga0209619_10030455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	3498	Open in IMG/M
3300025174\|Ga0209324_10514091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RBG_16_64_48	723	Open in IMG/M
3300025313\|Ga0209431_10018357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	5371	Open in IMG/M
3300025318\|Ga0209519_10343655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	860	Open in IMG/M
3300025535\|Ga0207423_1058730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	683	Open in IMG/M
3300025721\|Ga0209587_1025317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1770	Open in IMG/M
3300025898\|Ga0207692_10822048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300025914\|Ga0207671_10760756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300025920\|Ga0207649_11286506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300025923\|Ga0207681_11793320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	512	Open in IMG/M
3300025953\|Ga0210068_1001464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2880	Open in IMG/M
3300025959\|Ga0210116_1000310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6086	Open in IMG/M
3300026053\|Ga0208422_1045051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300026067\|Ga0207678_10495169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1065	Open in IMG/M
3300026498\|Ga0257156_1139696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300026898\|Ga0207788_1019762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	596	Open in IMG/M
3300027049\|Ga0207806_1027996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648	Open in IMG/M
3300027876\|Ga0209974_10143185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	858	Open in IMG/M
3300027876\|Ga0209974_10173337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300027907\|Ga0207428_11019100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581	Open in IMG/M
3300028807\|Ga0307305_10274532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300028814\|Ga0307302_10707403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300029636\|Ga0222749_10816501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300031170\|Ga0307498_10066617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1024	Open in IMG/M
3300031256\|Ga0315556_1083967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1244	Open in IMG/M
3300031280\|Ga0307428_1132682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	636	Open in IMG/M
3300031359\|Ga0307426_1106523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	1047	Open in IMG/M
3300031368\|Ga0307429_1029566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1788	Open in IMG/M
3300031368\|Ga0307429_1174653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300031563\|Ga0307436_1173661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300031565\|Ga0307379_10403795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1309	Open in IMG/M
3300031949\|Ga0214473_11399105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300032053\|Ga0315284_11336128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	775	Open in IMG/M
3300032066\|Ga0318514_10441192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300032163\|Ga0315281_10776495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	991	Open in IMG/M
3300034115\|Ga0364945_0091997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	882	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.72%
Host-Associated	Host-Associated	20.57%
Engineered	Engineered	0.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.77%
Aquatic	Environmental → Aquatic	26.95%
Plants	Host-Associated → Plants	20.57%
Solid Waste	Engineered → Solid Waste	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.31%
Marine	Environmental → Aquatic → Marine	11.35%
Freshwater	Environmental → Aquatic → Freshwater	9.22%
Sediment	Environmental → Aquatic → Sediment	6.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.26%
Floodplain	Environmental → Terrestrial → Floodplain	0.71%
Grass	Engineered → Solid Waste → Grass	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.06%
Loam	Environmental → Terrestrial → Soil → Loam	9.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.09%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.38%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.84%
Sand	Environmental → Terrestrial → Soil → Sand	2.13%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.42%
Lake	Environmental → Aquatic → Freshwater → Lake	1.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.42%
Clay	Environmental → Terrestrial → Soil → Clay	0.71%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.71%
Composting	Engineered → Solid Waste → Grass → Composting	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.06%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	7.80%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	7.09%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.38%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	4.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.84%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.13%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.13%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.42%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.42%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.71%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.71%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.71%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	7.09%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.38%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	6.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.67%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	4.26%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	3.55%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.55%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.13%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.13%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.13%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.13%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.42%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.42%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.42%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.71%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.71%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.71%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.71%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.71%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.71%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.71%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.71%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000878	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-5 cm-9A)- 1 week illumina	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300002120	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2	Environmental	Open in IMG/M
3300002243	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2	Environmental	Open in IMG/M
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005105	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006792	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011998	Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M	Environmental	Open in IMG/M
3300012003	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300014317	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300014827	Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025174	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025535	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025721	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025953	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025959	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026053	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026898	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79 (SPAdes)	Environmental	Open in IMG/M
3300027049	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 72 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031256	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-10	Environmental	Open in IMG/M
3300031280	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-240	Environmental	Open in IMG/M
3300031359	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-40	Environmental	Open in IMG/M
3300031368	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-230	Environmental	Open in IMG/M
3300031563	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4MG_03397700	2170459019	Switchgrass, Maize And Mischanthus Litter	MEDSDKVTTCDQCKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEEDLRALHELVRHR
FD1_07996320	2170459024	Grass Soil	MVDADKIACCNQCKQPLIEIDNHGKRLKGCLTCNLWSTADGKRWKRLSEEDLRAIHQLVRHR
ICCgaii200_09185344	2228664021	Soil	IGGWMEDSDKVTTCDQCKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEEDLRALHELVRHR
AL9A1W_10896581	3300000878	Permafrost	MTDDDGIACCNQCKQALIEIENRGERLTGCLTCNLWATTDDQRWKRLSEEDLRALHQLRHG*
JGI11643J12802_123266312	3300000890	Soil	DRITCCNKCKQPLIEIDNRGERLKGCLTCNLWSTVDRKLWKRLSEEDLRALHALVRHQ*
A1565W1_108987122	3300001536	Permafrost	MTDEEQIARCHNCKQALIEIDNRGELLTGCLTCNLWAAAGSERWKRLSEADLRALHLLRHS*
C687J26616_100021333	3300002120	Soil	MTDDDKIARCNQCKQPLTEIDNRGERLTGCLTCNLWAMAEGTRWKRLSEEDLRALHLLKRHVRGP*
C687J29039_103493791	3300002243	Soil	MTDDDKIARCNQCKQPLTEIDNRGERLTGCLTCNLWAMAXGARWKRLSEEDLRALHLLKRHVREP*
Ga0055455_100300001	3300003990	Natural And Restored Wetlands	ASTPNPSLWFARPSPKVRKMTEDDKGQCCNQCKQPLTEIDNHGEWLTGCLTCNLWSTAEGKRWRRLSEEDLRALHLLTRHGRGH*
Ga0055467_101024371	3300003996	Natural And Restored Wetlands	MTEDAKGACCNQCKQPLSEIDNHGERLTGCVTCNLWSTAAGKRWKRLSEEDLRALHLLTRHGRRD*
Ga0055453_102944961	3300004006	Natural And Restored Wetlands	MTEDDKIACCNKIACCNQCKQPLTEIDNHGEWLSGCLTCNLWSAAEGKRWRRLSEEDLRALHLLTRHGRGY*
Ga0055439_100641792	3300004019	Natural And Restored Wetlands	MTEDDKIACCNQCKQPLTEIDNHGEWLSGCLTCNLWSAAEGKRWRRLSEEDLRALHLLTRHGRGY*
Ga0055436_101456553	3300004024	Natural And Restored Wetlands	QCKQVLIEIDNRGERLTGCLTCNLWADADGNRWKRLSEEDLRRLHLLMRHGPEE*
Ga0055436_102636331	3300004024	Natural And Restored Wetlands	MTEDDKIACCNQCKQPLTEIDNHGEWLSGCLTCNLWSAAEGKRWRRLSEEDLRALHLLTRHGRGN*
Ga0062593_1019317901	3300004114	Soil	MNSDKTACCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKKLSEEDLRALHLLVRHGD*
Ga0063356_1023144772	3300004463	Arabidopsis Thaliana Rhizosphere	MVDADKIACCNQCKQPLIEIDNRGKRLKGCLTCNLWSTPDGKRWKRLSEEDLRAFHQLVRR*
Ga0062595_1002742072	3300004479	Soil	MEDSDKVTTCNQCKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEEDLRALHELVRHR*
Ga0062592_1018761541	3300004480	Soil	MEDSDKVTTCDQCKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEEDLPCAPRAGATSVKW*
Ga0069718_156608341	3300004481	Sediment	VTEDDNSACCNQCKQPLTEIDNHGERLTGCVTCNLWSTAGGKRWKRLSEEDLRALHLLARHGRRP*
Ga0071328_1117178	3300005045	Permafrost	MTDDVARCNHCKQVLIEIDNRGERLTGCLTCNLWTAAGSKRWKRLSEADLRALHAAATLRSCACLML*
Ga0066812_10035402	3300005105	Soil	MVDADKIACCNQCKQPLIEIDNRGKRLKGCLTCNLWSTADGKRWKRLSEEDLRAFHQLVRHR*
Ga0066810_100810951	3300005169	Soil	MVDADKIACCNQCEQPLIEIDNRGQRLKGCLTCNLWSTADGKRWKRLSEEDLRAIHQLVRHR*
Ga0068996_100358801	3300005218	Natural And Restored Wetlands	MTDADSSARCNHCKQPLIEINNRSERLWGCLTCNLWAAANSKRWERLSEEDLRALHQLHHSRG*
Ga0065705_107618521	3300005294	Switchgrass Rhizosphere	NAERALMDADRITCCNQCKQPLIEIDNRGERLNGCLTCNLWSTVDRKLWKRLSKEDLRALHALVRHE*
Ga0070680_1012704701	3300005336	Corn Rhizosphere	MNSDKIDYCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLRALHSLVRHGD*
Ga0070669_1010157501	3300005353	Switchgrass Rhizosphere	MKNSDKIACCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLRALHLLVPADPL
Ga0070709_108090282	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKNSDKIACCNQCKQPLTEIDNYGERLTGCLTSNLWATADGTRWKRLSEEDLRALHLLVRHGD*
Ga0070709_113141792	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MVDADKIPCCNQCKQPLIEIDNLGKRLKGCLTCNLWSTADGKRWKRLSEEDLRAIHQLMR
Ga0070711_1001630013	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKNSDKIACCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLRALHSLVRHGD*
Ga0070711_1019234561	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MVDADKIPCCNQCKQPLIEIDNLGKRLKGCLTCNLWSTADGKRWKRLSEEDLRAIHQLVRHR*
Ga0070662_1005292692	3300005457	Corn Rhizosphere	RKKWPQGARRNAYRKTTPSMKNSDKIACCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLRALHSLVRHGD*
Ga0070707_1017995321	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MVDADKIACCNQCKQPLIEIDNRGKRLKGCLTCNLWSTVDRKLWKRLSEEDLRALHQLVRHR*
Ga0070699_1004768732	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDADRITCCNQCKQPLIEIDNRGERLKGCLTCNLWSTVDRKLWKRLSKEDPRALHALVRHQ*
Ga0070664_1017097471	3300005564	Corn Rhizosphere	GARRNAYRKTTPSMKNSDKIACCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLRALHSLVRHGD*
Ga0068852_1025549502	3300005616	Corn Rhizosphere	CNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLRALHSLVRHGD*
Ga0075024_1008796681	3300006047	Watersheds	MDADRITCCNQCKQPLIEIDNGGERLKGCLTCNLWSTVDRKLWKRLSDEDLRALYALVRHQ*
Ga0075026_1002585192	3300006057	Watersheds	MVDADKIACCNQCKQPLIEIDNRGKRLKGCLTCNLWSTVDRKLWKRLSEEDLRALYALVRDQ*
Ga0075018_107717041	3300006172	Watersheds	MVDADKIACCNQCKQPLIEIDNRGKRLKGCLTCNLWSTADGKRWKRLSEEDLRAIHQLVRHR*
Ga0070712_1008359683	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	NKCKQPLIEIDNRGERLKGCLACNLWSTVDRKLWKRLSKEDLRALHALLRHE*
Ga0075021_101287243	3300006354	Watersheds	MDADRITCCNQWKQPLIEIDNGGERLKGCLTCNLWSTVDRKLWKRLSEEDLRALYALVRHQ*
Ga0075530_11223053	3300006792	Arctic Peat Soil	MTDEEQIVRCHNCKQALIEIDNRGERLTGCLTCNLWAAAGSKRWKRLSETDLRALHLLRHGGEH*
Ga0079220_100303904	3300006806	Agricultural Soil	MKNSDKTACCNQCKQPLTEIDNYGERLTGCLTCNLWATAHGTRWKRLSEEDLRALHLLVRHGD*
Ga0075428_1007764853	3300006844	Populus Rhizosphere	MEDSDKFTTCDQCKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEEDLPALHELVRHR*
Ga0075421_1009620342	3300006845	Populus Rhizosphere	MKNSDKTACCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLRALHLLVRHGD*
Ga0075433_102437432	3300006852	Populus Rhizosphere	MEDSDKVTTCDQRKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEEDLRALHELVRHR*
Ga0075433_118491591	3300006852	Populus Rhizosphere	VTPAKARKNAERAVMDADRITCCNQCKQPLIEIDNGGERLKGCLTCNLWSTVDRKLWKRLSEEDLRALH
Ga0075434_1013878771	3300006871	Populus Rhizosphere	MEDSDKVTTCDQCKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEEDL
Ga0075434_1017263131	3300006871	Populus Rhizosphere	PQGARRNAYRKTTPSMKNSDKTACCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLRALHLLVRHGD*
Ga0075424_1005465622	3300006904	Populus Rhizosphere	MEDSDKVTTCDQCKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEEDLRALHELVRHR*
Ga0075436_1001223344	3300006914	Populus Rhizosphere	MKNSDKTACCNQCKQPLTEIDNYGERLIGCLTCNLWATADGTRWKRLSEEDLRALHLLVRHGD*
Ga0075435_1018058892	3300007076	Populus Rhizosphere	MEDSDKVTTCDQRKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEQDLRALHELVRHR*
Ga0111539_108734483	3300009094	Populus Rhizosphere	ARRNAYRKTTPSMKNSDKTACCNQCKQPLTEIDNYGERLIGCLTCNLWATADGTRWKRLSEEDLRALHLLVRHGD*
Ga0111539_113243691	3300009094	Populus Rhizosphere	MKNSDKTACCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLRALHLLVRHG
Ga0105247_110260392	3300009101	Switchgrass Rhizosphere	MKNSDKTECCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWERLSEEDLRALHSLVRHGD*
Ga0114129_116706061	3300009147	Populus Rhizosphere	VAPRPRFRKNAERAVMDADRITCCNQCKQPLIEIDNRGERLKGCLTCNLWSTVDRKLWKRLSEEDLRALHALVRHQ*
Ga0075423_102621692	3300009162	Populus Rhizosphere	MEDSDKVTTCDQCKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEQDLRALHELVRHR*
Ga0105072_10839941	3300009818	Groundwater Sand	KRAYMTGDDKMAVCNQCKQPLTEIDNRGERLTGCLTCNLWAMAEGMRWKRLSEEDLRALHLLKRRAPKR*
Ga0105072_11104923	3300009818	Groundwater Sand	MTDDDKIARCNQCKQPLTEIDNRGERLTGCLTCNLWAMAEGTRWKRLSEEDLRA
Ga0105064_10102971	3300009821	Groundwater Sand	MADDAKIAVCNQCKQPLTEIDNRGERLTGCLTCNLWAGPEGTRWKRLSEEDLRALHL
Ga0126306_112222231	3300010166	Serpentine Soil	MADEDRLGGCNHCKQPLVEIDNRGQRLTGCLTCNLWSGADSKRWTRLSEEDLRAVHRLSRHGPKG*
Ga0134124_103078432	3300010397	Terrestrial Soil	VPSRIHWRKKWPQGARRNAYRKTTPSMKNSDKIACCNQCKQPLTEIDNYGERLTGCLTRNLWATADGTRWKRLSEEDLRALHSLVRHGD*
Ga0120114_10077752	3300011998	Permafrost	MTDDDGIACCNQCKQALIEIDNRGERLTGCLTCNLWATTDDQRWKRLSEEDLRALHQLRHG*
Ga0120163_11094261	3300012003	Permafrost	MTDDNDIACCNQCKQALIEIDNRGERLTGCLTCNLWTTADDQRWKRLSEEDLRALHQLRHG*
Ga0120118_10130825	3300012010	Permafrost	MTDDDGIACCNQCKQALIEIDNRGERLTGCLTCNLWATADDQRWKRLSEEDLRALHQLRHG*
Ga0137369_101338155	3300012355	Vadose Zone Soil	VPSISSPMTDDDGMPCCNQCKQALIEIDNCGERLIGCLTCNLWATPGGKRWKRLSEEDLRALHLLRHGQRD*
Ga0157296_104024002	3300012905	Soil	PRPRLRKNAERAAMDADKITSCNQCKQPLIEIDNRGERLKGCLTCNLWSTVDRKLWKRLSEEDLRALHALVRHQ*
Ga0164301_103566963	3300012960	Soil	MVDADKIACCNQCKQPLIEIDNRGKRLKGCLTCNLWSTADGKRWKRLSEEDLRAFHQLVRHQ*
Ga0164301_105177611	3300012960	Soil	MDADRITCCNKCKQPLIEIDNRGERLKGCLACNLWSTVDRKLWKRLSEEDLRALHALRRGN*
Ga0164302_103230922	3300012961	Soil	MVDADKIACCNQCKQPLIEIDNRGKLLKGCLTCNLWSTADGKRWKRLSEEDLRAFHQLVRHR*
Ga0164302_106982421	3300012961	Soil	AKARKNAERAVMDADRITCCNQCKQPLIEIDNSGERLKGCLTCNLWSTVDRKLWKRLSEEDLRALHALMRHR*
Ga0164308_101941412	3300012985	Soil	MDADRITCCNQCKQPLIEIDNRGERLKGCLTCNLWSTVDGKLWKRLSEEDLRALHTLMRHR*
Ga0164304_104284781	3300012986	Soil	MDADRITCCNQCKQPLIEIDNRGERLKGCLTCNLWSTVDRKLWKRLSEEDLRALHTLMRHR*
Ga0164304_107093953	3300012986	Soil	MDADRITCCNKCKQPLIEIDNRGERLKGCLACNLWSTVDRKLWKRLSKEDLRALHTLMRGN*
Ga0164306_104734941	3300012988	Soil	AQMVDADKIACCNQCKQPLIEIDNRGKLLKGCLTCNLWSTADGKRWMRLSEEDLRAIHQLVRHR*
Ga0120154_11234362	3300013501	Permafrost	MTDEEQIARCHNCKQALIEIDNRGELLTGFLTCNLWAAADSERWKRLSEADLRALHLLRHS*
Ga0120123_10041803	3300013770	Permafrost	MTGEEQIARCHNCKQALIEIDNRGELLTGCLTCNLWAAAGSERWKRLSEADLRALHLLRHS*
Ga0075309_11237882	3300014268	Natural And Restored Wetlands	MTEDAKGACCNQCKQPLSEIDNHGERLTGCMTCNLWATARGKRWKRLSEEDLRALHLLTRHGRRG*
Ga0075343_11881401	3300014317	Natural And Restored Wetlands	KMTADDKSPCCNQCKRPLAEIDNHGERLTGCLTCNLWSAAAGKRWRRLSEEDLRALHLLTRHGRRS*
Ga0075343_12055701	3300014317	Natural And Restored Wetlands	MTADDKTACCNQCKQPLAEIDNHGERLTGCLTCNLWSTAEGKGWRRLSEEDLRELHLLTRHGRRS
Ga0075342_10018168	3300014320	Natural And Restored Wetlands	MTEDAKGACCNQCKQPLTEIDNHGERLTGCMTCNLWATARGKRWKRLSEEDLRALHLLTRHVRRG*
Ga0075353_10654661	3300014321	Natural And Restored Wetlands	MTENDKAAYCNQCKQVLIEIDNRGERLTGCLTCNLWADADGNRWKRLSEEDLRRLHL
Ga0120171_11049332	3300014827	Permafrost	MTDDDGIACCNQCKQALIEIENRGERLTGCLTCNLWATADDQRWKRLSEEDLRALHQLRH
Ga0157379_102962281	3300014968	Switchgrass Rhizosphere	MKNSDKTACCNQCKQPLTEIDNYGERLTGCLTCNLWATAHGTRWKRLSEEDLRALHLLV
Ga0173480_107427271	3300015200	Soil	MKNSDKTACCNQCKQPLTEIDNYGERLTGCLTCNLWSTVDRKLWKRLPEEDLRALYALVRHQ*
Ga0132258_113554022	3300015371	Arabidopsis Rhizosphere	MDADADRITCCNQCKQPLIEIDNHGERLKGCLTCNLWSIVDRKLWKRLSEEDLRALHALVRHQ*
Ga0132255_1000382431	3300015374	Arabidopsis Rhizosphere	MDADRITCCNQCKQPLIEIDNRGERLKGCLTCNLWSIVDRKLWKRLSEEDLRALHALVRHQ*
Ga0182037_109310702	3300016404	Soil	MDADRITCCTKCKQPLIEIDNRGERLKGCLTCNLWSTVDRKLWKRLSKEDLRALHALLRH
Ga0187802_100181592	3300017822	Freshwater Sediment	MIGGDKIATCDQCKQALIEIDNRGEHLTGCLTCNLWSVADGERWKRLSEEDLRALHALVRHQ
Ga0187818_103049431	3300017823	Freshwater Sediment	GGDKIATCDQCKQALIEIDNRGERLTGCLTCNLWSVADGERWKRLSEEDLRALHALVRHQ
Ga0187807_11633572	3300017926	Freshwater Sediment	MIRGDKIATCDQCKQALIEIDNRGERLTGCLTCNLWSVADGERWKRLSEEDLRALHALVRHQ
Ga0187806_13525871	3300017928	Freshwater Sediment	MVDADKIACCNQCKQPLIAIDNRGKRLKGCLTCNLWSTADGKPWKRLSEED
Ga0187814_100110774	3300017932	Freshwater Sediment	MVDADKIACCNQCKQPLIAIDNRGKRLKGCLTCNLWSTADGKPWKRLSEEDLRALHALVRHK
Ga0187814_100384941	3300017932	Freshwater Sediment	MIGGDKIATCDQCKQALIEIDNRGERLTGCLTCNLWSVADGERWKRLSEEDLRALHALVRHQ
Ga0187809_100144132	3300017937	Freshwater Sediment	MVDADKVACCNQCKQPLIAIDNRGKSLKGCLTCNLWSTADGKPWKRLSEEDLRALHALVRHK
Ga0187823_103986171	3300017993	Freshwater Sediment	MVDADKVACCNQCKQPLIAIDNRGKRLKGCLTCNLWSTADGKPWKRLSEEDLRALHALVRHK
Ga0187816_100301682	3300017995	Freshwater Sediment	MVDADKIACCNQCKQPLIAIDNRGKRLKGCLTCNLWSTADGKPWKRLSEEDPRALHALVRHK
Ga0184605_103215861	3300018027	Groundwater Sediment	MTDCCNQCKQALIEIDNCGERLIGCLTCNLWATPGGKRWKRLSEEDLRGLHLLRH
Ga0184608_101244091	3300018028	Groundwater Sediment	MVDADKIACCNQCKQPLIEIDNRGKRLKGCLTCNLWSTADGKRWKRLSEEDLRAFHQLVRHR
Ga0184619_101841113	3300018061	Groundwater Sediment	MTDDDGIACCNQCKQPLIEIDNRGERLTGCLTCNLWATADVNRWRRLSEEDLRALHQLRHHDPQGSQT
Ga0184632_101644511	3300018075	Groundwater Sediment	MKGRWPKQTLMTDDDKAACCDQCKQPLTQIDNRGERLAGCLTCNLWATADGKRWKRLSEEDLRALHLLTRHR
Ga0184609_100564123	3300018076	Groundwater Sediment	MKGRWPKRALMTDDDKAACCDQCKQPLTQIDNRGERLAGCLTCNLWATADGKRWKRLSEEDLRALHLLTRHR
Ga0190272_124163292	3300018429	Soil	MTDEEQIALCHNCKQALIEIDNRGERLTGCLTCNLWAAAGSKRWKRLSEADLHALHLLRHGGVR
Ga0190270_105751843	3300018469	Soil	MDADRITCCNQCKQPLIEIDNRGERLKGCLTCNLWSTVDRKLWKRLSEEDLRALHALVRH
Ga0173481_108065901	3300019356	Soil	MEDSDKVTTCDQRKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEEDLPALHELVRHR
Ga0210379_104024611	3300021081	Groundwater Sediment	TDDDKIARCNQCKQPLTEIDNRGERLTGCLTCNLWAMAEGTRWKRLSEEDLRALHLLKRHVRGP
Ga0209619_100304555	3300025159	Soil	MTGDDKIAVCNQCKQPLTEIDNRGERLTGCLTCNLWAMAEGARWKRLSEEDLRALHLLKRRAPKR
Ga0209324_105140911	3300025174	Soil	MTDDDKIARCNQCKQPLTEIDNRGERLTGCLTCNLWAMAEGARWKRLSEEDLRALHLLKRMSE
Ga0209431_100183578	3300025313	Soil	MTGDDKIAVCNQCKQPLTEIDNRGERLTGCLTCNLWAMAEGTRWKRLSEEDLRALHLLRR
Ga0209519_103436551	3300025318	Soil	MTGDDKMAVCNQCKQPLTEIDNRGERLTGCLTCNLWAMAEGMRWKRLSEEDLRALHLLKRRAP
Ga0207423_10587301	3300025535	Natural And Restored Wetlands	KRGTHRSERQMTENDKAACCNQCKQVLTEIDNRGERLTGCLTCNLWAAADGNRWKRLSEEDLRRLHLLMRHGPEE
Ga0209587_10253171	3300025721	Arctic Peat Soil	MTDEEQIVRCHNCKQALIEIDNRGERLTGCLTCNLWAAAGSKRWKRLSETDLRALHLLRHGGEH
Ga0207692_108220482	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MDADRITCYNKCKQPLIEIDNRGERLKGCLACNLWSTVDRKLWKRLSEEDLRALHALRRG
Ga0207671_107607561	3300025914	Corn Rhizosphere	MKNSDKIACCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLR
Ga0207649_112865061	3300025920	Corn Rhizosphere	PSMKNSDKIACCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLRALHSLVRHGD
Ga0207681_117933201	3300025923	Switchgrass Rhizosphere	MKNSDKIACCNQCKQPLTEIDNYGERLTGCLTRNLWATADGTRWKRLSEEDLRALHSLVRHGD
Ga0210068_10014642	3300025953	Natural And Restored Wetlands	MTEDDKIACCNQCKQPLTEIDNHGEWLSGCLTCNLWSAAEGKRWRRLSEEDLRALHLLTRHGRGN
Ga0210116_10003108	3300025959	Natural And Restored Wetlands	MTEDDKIACCNQCKQPLTEIDNHGEWLSGCLTCNLWSAAEGKRWRRLSEEDLRALHLLTRHGRGY
Ga0208422_10450512	3300026053	Natural And Restored Wetlands	MTEDAKGACCNQCKQPLTEIDNHGERLTGCMTCNLWATARGKRWKRLSEEDLRALHLLTRHVRRG
Ga0207678_104951691	3300026067	Corn Rhizosphere	PVPSRIHWRKKWPQGARRNAYRKTTPSMKNSDKIACCNQCKQPLTEIDNYGERLTGCLTCNLWATADGTRWKRLSEEDLRALHSLVRHGD
Ga0257156_11396962	3300026498	Soil	MTDDNDIACCNQCKQALIEIDNRGERLTGCLTCNLWTTADDQRWKRLSEEDLRALHQLRH
Ga0207788_10197621	3300026898	Tropical Forest Soil	MTDEDGIARCIQCKQPLIEIDNYGARLTGCLTCNLWSVADGKRWIRLPEEDLRALHLLRRQP
Ga0207806_10279962	3300027049	Tropical Forest Soil	MTDEDGIARCIQCKQPLIEIDNYGARLTGCLTCNLWSVADGKRWIRLPEEDLRALHLL
Ga0209974_101431852	3300027876	Arabidopsis Thaliana Rhizosphere	MEDSDKVTTCDQCKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEQDLRALHELVRHR
Ga0209974_101733371	3300027876	Arabidopsis Thaliana Rhizosphere	VAPRPRLRKNAERAVMDADRITCCNQCKQPLIEIDNRGERLKGCLTCNLWSTVDRKLWKRLSEEDL
Ga0207428_110191002	3300027907	Populus Rhizosphere	LSEGGWKTVTVTTCDQCKQALTEIDNRGERLIGCLTCNLWSVAGGKRWKRLSEQDLRALHELVRHR
Ga0307305_102745321	3300028807	Soil	MTDDDGIACCNQCKQPLIEIDNRGERLTGCLTCNLWATADVNRWRRLSEEDLRA
Ga0307302_107074031	3300028814	Soil	MTEDDKGACCNQCKQPLTEIDNHGERLTGCVTCNLWSAPEGKRWQRLSEEDLRALHLLTRHGRHN
Ga0222749_108165011	3300029636	Soil	AERAVMDADRITCCNQCKQPLIEIDNRGERLKGCLTCNLWSTVDRKLWKRLSEEDLRALHTLMRHR
Ga0307498_100666171	3300031170	Soil	RIICCNQCKQPLIEIDNLGERLKGCLTCNLWSTLDRKLWKRLSEEDLRALYALVRHQ
Ga0315556_10839674	3300031256	Salt Marsh Sediment	LTDDDNLGRCNQCHQALSEIDNQGERLVGCLTCNLWADADGKRWKRLSEEDLRLLH
Ga0307428_11326821	3300031280	Salt Marsh	VTDGDKLACCNQCKQPLTEIDNRGERLTGCLTCNLWATTEGKQWKRLSEEDLRALHLLVRHRP
Ga0307426_11065231	3300031359	Salt Marsh	VTDDDKRGRCNQCQQALSEIHSHGERLIGCFTCNLWATAEGKRWKRLSEEDLRSLHRLRH
Ga0307429_10295661	3300031368	Salt Marsh	VTDGDKFACCNQCKQPLTEIDNRGERLTGCLTCNLWATAEGKQWKRLSEEDLRALHLLVRHRP
Ga0307429_11746531	3300031368	Salt Marsh	MTDDDKLACCNQCKKPLIEIDNRGERLTGCVTCNLWATPEGKRWKRLSEEDLRA
Ga0307436_11736611	3300031563	Salt Marsh	GALLGFRLAEKASPLIDDNKLGRCNQCQQALSEIDNHGERLVGCFTCNLWADAEGKRWKRLSEEDLRSLHRLRHGQGS
Ga0307379_104037951	3300031565	Soil	QCKQPLAEIDNHGERLTGCLTCNLWSTAEGKGWRRLSEEDLRELHLLTRHGRRS
Ga0214473_113991051	3300031949	Soil	KNAERAVMDADRITCCNQCKQPLIEIDNRGERLKGCLTCNLWSTVDRKLWKRLSEEDLRALHAVRHQ
Ga0315284_113361282	3300032053	Sediment	MADDDKSAFCNHCKQPLIEIDNRGERLSGCLTCNLWTTAEGKRWKRLSEEDLRGLHLLARHR
Ga0318514_104411922	3300032066	Soil	MDADRITCCNKCKQPLIEIDNRGERLKGCLTCNLWSTVDRKLWKRLSKEDLRA
Ga0315281_107764951	3300032163	Sediment	MTEDDKIAYCNQCKQALTEIDNRGERLTGCLTCNLWATADGKRWKRLSEEDLRRLHLLMRHGPGG
Ga0364945_0091997_662_880	3300034115	Sediment	MKGRWPKQALMTDDDKAACCDQCKQPLTQIDNRGERLAGCLTCNLWATADGKRWKRLSEEDLRALHLLTRHR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F053517

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences