Metagenome / Metatranscriptome Family F053328

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F053328
Family Type	Metagenome / Metatranscriptome
Number of Sequences	141
Average Sequence Length	74 residues
Representative Sequence	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDAHAESMRPAASGRA
Number of Associated Samples	107
Number of Associated Scaffolds	141

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.43 %
% of genes near scaffold ends (potentially truncated)	34.75 %
% of genes from short scaffolds (< 2000 bps)	91.49 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.539 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.603 % of family members)
Environment Ontology (ENVO)	Unclassified (35.461 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.610 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.39% β-sheet: 12.75% Coil/Unstructured: 56.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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SCOP family	SCOP domain	Representative PDB	TM-score
a.6.1.5: Terminase gpNU1 subunit domain	d6hn7b1	6hn7	0.64788
a.6.1.0: automated matches	d2zhga_	2zhg	0.62382
a.6.1.3: DNA-binding N-terminal domain of transcription activators	d1r8da_	1r8d	0.61816
a.6.1.3: DNA-binding N-terminal domain of transcription activators	d1r8ea1	1r8e	0.61772
a.6.1.7: Excisionase-like	d1tnsa_	1tns	0.58485

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 141 Family Scaffolds
PF04909	Amidohydro_2	36.88
PF00543	P-II	24.11
PF07731	Cu-oxidase_2	2.84
PF03239	FTR1	1.42
PF00486	Trans_reg_C	1.42
PF09754	PAC2	1.42
PF00072	Response_reg	0.71
PF13460	NAD_binding_10	0.71
PF03710	GlnE	0.71
PF12728	HTH_17	0.71
PF08335	GlnD_UR_UTase	0.71
PF07732	Cu-oxidase_3	0.71
PF01844	HNH	0.71
PF00512	HisKA	0.71
PF00909	Ammonium_transp	0.71

COG ID	Name	Functional Category	% Frequency in 141 Family Scaffolds
COG0347	Nitrogen regulatory protein PII	Signal transduction mechanisms [T]	24.11
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	3.55
COG1391	Glutamine synthetase adenylyltransferase	Posttranslational modification, protein turnover, chaperones [O]	1.42
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.71
COG2844	UTP:GlnB (protein PII) uridylyltransferase	Signal transduction mechanisms [T]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.96 %
Unclassified	root	N/A	34.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.54 %
Unclassified	root	N/A	34.04 %
Viruses	superkingdom	All Organisms → Viruses	1.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.54 %
Unclassified	root	N/A	34.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.42 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	55.32 %
Unclassified	root	N/A	34.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.55 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.42 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.32 %
Unclassified	root	N/A	34.04 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.13 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.42 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	41.84 %
Unclassified	root	N/A	34.04 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.13 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.42 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.04 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	18.44 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.84 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	2.13 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.42 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.42 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1.42 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.42 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.04 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	18.44 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.84 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.13 %
Patulibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae	1.42 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.42 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1.42 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.42 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.04 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	18.44 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.84 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.13 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	1.42 %
pseudomallei group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group	1.42 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.42 %
Thermobifida	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Thermobifida	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.42 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.04 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	18.44 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.84 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.13 %
Thermobifida cellulosilytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Thermobifida → Thermobifida cellulosilytica	1.42 %
Streptomyces davaonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis	1.42 %
Patulibacter medicamentivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter medicamentivorans	1.42 %
Burkholderia pseudomallei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.42 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.04 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	18.44 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.84 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.13 %
Burkholderia pseudomallei 1710b	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	1.42 %
Thermobifida cellulosilytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Thermobifida → Thermobifida cellulosilytica	1.42 %
Streptomyces davaonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis	1.42 %
Patulibacter medicamentivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter medicamentivorans	1.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.42 %
Frankia sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp.	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_104515925	Not Available	1025	Open in IMG/M
3300002568\|C688J35102_119683201	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300002568\|C688J35102_120395123	All Organisms → Viruses → Predicted Viral	1037	Open in IMG/M
3300004081\|Ga0063454_100063440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1557	Open in IMG/M
3300004479\|Ga0062595_100260709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1133	Open in IMG/M
3300004479\|Ga0062595_100910768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	742	Open in IMG/M
3300004479\|Ga0062595_101484332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Thermobifida → Thermobifida cellulosilytica	624	Open in IMG/M
3300005328\|Ga0070676_10556004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	822	Open in IMG/M
3300005329\|Ga0070683_100201377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1890	Open in IMG/M
3300005332\|Ga0066388_100914458	All Organisms → cellular organisms → Bacteria	1454	Open in IMG/M
3300005332\|Ga0066388_101322408	Not Available	1245	Open in IMG/M
3300005332\|Ga0066388_105003137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis	673	Open in IMG/M
3300005332\|Ga0066388_106783482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter medicamentivorans	577	Open in IMG/M
3300005334\|Ga0068869_100937112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	751	Open in IMG/M
3300005338\|Ga0068868_100511539	All Organisms → Viruses → Predicted Viral	1053	Open in IMG/M
3300005344\|Ga0070661_101490215	Not Available	570	Open in IMG/M
3300005347\|Ga0070668_102074799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	525	Open in IMG/M
3300005354\|Ga0070675_101856643	Not Available	556	Open in IMG/M
3300005355\|Ga0070671_101671553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300005434\|Ga0070709_10695429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	791	Open in IMG/M
3300005436\|Ga0070713_101833625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	589	Open in IMG/M
3300005439\|Ga0070711_100759609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	820	Open in IMG/M
3300005456\|Ga0070678_100599785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	983	Open in IMG/M
3300005458\|Ga0070681_11405376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	622	Open in IMG/M
3300005468\|Ga0070707_102280077	Not Available	509	Open in IMG/M
3300005530\|Ga0070679_101569431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	606	Open in IMG/M
3300005548\|Ga0070665_100386008	All Organisms → cellular organisms → Bacteria	1408	Open in IMG/M
3300005548\|Ga0070665_101811651	Not Available	617	Open in IMG/M
3300005564\|Ga0070664_100893578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	833	Open in IMG/M
3300005614\|Ga0068856_102245000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis	554	Open in IMG/M
3300005719\|Ga0068861_101064155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	776	Open in IMG/M
3300005764\|Ga0066903_101129344	Not Available	1448	Open in IMG/M
3300005764\|Ga0066903_101454687	Not Available	1291	Open in IMG/M
3300005764\|Ga0066903_102058821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1098	Open in IMG/M
3300005764\|Ga0066903_106718604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	598	Open in IMG/M
3300005840\|Ga0068870_10656714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	719	Open in IMG/M
3300005841\|Ga0068863_101246310	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300005842\|Ga0068858_101181574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	752	Open in IMG/M
3300006028\|Ga0070717_11784091	Not Available	556	Open in IMG/M
3300006028\|Ga0070717_11919650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Thermobifida → Thermobifida cellulosilytica	534	Open in IMG/M
3300006048\|Ga0075363_100320129	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300006050\|Ga0075028_100257120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	961	Open in IMG/M
3300006057\|Ga0075026_100549193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter medicamentivorans	672	Open in IMG/M
3300006059\|Ga0075017_100333535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1126	Open in IMG/M
3300006059\|Ga0075017_101255017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	581	Open in IMG/M
3300006059\|Ga0075017_101310550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	568	Open in IMG/M
3300006102\|Ga0075015_100265331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	934	Open in IMG/M
3300006354\|Ga0075021_10007031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5987	Open in IMG/M
3300006580\|Ga0074049_11915317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M
3300006846\|Ga0075430_101344459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	587	Open in IMG/M
3300006854\|Ga0075425_100286424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1896	Open in IMG/M
3300006881\|Ga0068865_100687815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M
3300006904\|Ga0075424_100854746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	971	Open in IMG/M
3300006953\|Ga0074063_13228799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	789	Open in IMG/M
3300006954\|Ga0079219_11279585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	643	Open in IMG/M
3300009094\|Ga0111539_10941442	Not Available	1004	Open in IMG/M
3300009098\|Ga0105245_10305252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1563	Open in IMG/M
3300009098\|Ga0105245_12491837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	571	Open in IMG/M
3300009137\|Ga0066709_104411099	Not Available	514	Open in IMG/M
3300009148\|Ga0105243_10842389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	907	Open in IMG/M
3300009551\|Ga0105238_13057541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300009553\|Ga0105249_12160632	Not Available	629	Open in IMG/M
3300009840\|Ga0126313_10139420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1821	Open in IMG/M
3300010043\|Ga0126380_11724283	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	564	Open in IMG/M
3300010045\|Ga0126311_10036451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3069	Open in IMG/M
3300010047\|Ga0126382_11024810	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300010371\|Ga0134125_10052296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4541	Open in IMG/M
3300010371\|Ga0134125_12182484	Not Available	602	Open in IMG/M
3300010375\|Ga0105239_13319653	Not Available	524	Open in IMG/M
3300010376\|Ga0126381_100232996	Not Available	2483	Open in IMG/M
3300010400\|Ga0134122_10915018	Not Available	850	Open in IMG/M
3300011119\|Ga0105246_10682765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	898	Open in IMG/M
3300011119\|Ga0105246_11723317	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	596	Open in IMG/M
3300012212\|Ga0150985_107900366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1031	Open in IMG/M
3300012212\|Ga0150985_119534048	Not Available	936	Open in IMG/M
3300012212\|Ga0150985_120176388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300012469\|Ga0150984_111798646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp.	2164	Open in IMG/M
3300012469\|Ga0150984_113209300	Not Available	1123	Open in IMG/M
3300012951\|Ga0164300_10160180	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300012951\|Ga0164300_10518474	Not Available	685	Open in IMG/M
3300012955\|Ga0164298_10883754	Not Available	648	Open in IMG/M
3300012957\|Ga0164303_10526123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	762	Open in IMG/M
3300012958\|Ga0164299_10545532	Not Available	781	Open in IMG/M
3300012958\|Ga0164299_10606694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	749	Open in IMG/M
3300012961\|Ga0164302_10734992	Not Available	736	Open in IMG/M
3300012984\|Ga0164309_10191361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1399	Open in IMG/M
3300012984\|Ga0164309_10191952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1397	Open in IMG/M
3300012986\|Ga0164304_11178996	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	617	Open in IMG/M
3300012988\|Ga0164306_10106225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1841	Open in IMG/M
3300012989\|Ga0164305_11894118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300013104\|Ga0157370_11708324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300013297\|Ga0157378_11715966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	675	Open in IMG/M
3300013297\|Ga0157378_12099147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	616	Open in IMG/M
3300013297\|Ga0157378_12183877	Not Available	605	Open in IMG/M
3300013308\|Ga0157375_10826972	Not Available	1074	Open in IMG/M
3300013308\|Ga0157375_11584407	Not Available	774	Open in IMG/M
3300013308\|Ga0157375_11927224	Not Available	702	Open in IMG/M
3300014325\|Ga0163163_13228129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300014326\|Ga0157380_10873896	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300015371\|Ga0132258_12140056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1405	Open in IMG/M
3300017792\|Ga0163161_11032082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	703	Open in IMG/M
3300017947\|Ga0187785_10427353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	643	Open in IMG/M
3300017965\|Ga0190266_10395808	Not Available	764	Open in IMG/M
3300017974\|Ga0187777_10226562	Not Available	1264	Open in IMG/M
3300018476\|Ga0190274_10083409	Not Available	2470	Open in IMG/M
3300018476\|Ga0190274_11259405	Not Available	825	Open in IMG/M
3300018476\|Ga0190274_13871549	Not Available	507	Open in IMG/M
3300021560\|Ga0126371_10597161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1253	Open in IMG/M
3300025905\|Ga0207685_10693713	Not Available	554	Open in IMG/M
3300025906\|Ga0207699_10636334	Not Available	778	Open in IMG/M
3300025907\|Ga0207645_10762501	Not Available	658	Open in IMG/M
3300025912\|Ga0207707_11219711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	608	Open in IMG/M
3300025913\|Ga0207695_10625347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	958	Open in IMG/M
3300025916\|Ga0207663_10486362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	957	Open in IMG/M
3300025926\|Ga0207659_11338521	Not Available	614	Open in IMG/M
3300025931\|Ga0207644_10975912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	711	Open in IMG/M
3300025942\|Ga0207689_10666402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	877	Open in IMG/M
3300025944\|Ga0207661_10778931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	881	Open in IMG/M
3300025986\|Ga0207658_11562919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	603	Open in IMG/M
3300026088\|Ga0207641_11412376	Not Available	697	Open in IMG/M
3300026118\|Ga0207675_101811802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	629	Open in IMG/M
3300027894\|Ga0209068_10003064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7949	Open in IMG/M
3300027894\|Ga0209068_10488340	Not Available	709	Open in IMG/M
3300027894\|Ga0209068_10540461	Not Available	675	Open in IMG/M
3300028379\|Ga0268266_12121816	Not Available	535	Open in IMG/M
3300028379\|Ga0268266_12203627	Not Available	523	Open in IMG/M
3300028380\|Ga0268265_11905420	Not Available	601	Open in IMG/M
3300028778\|Ga0307288_10259634	Not Available	683	Open in IMG/M
3300028782\|Ga0307306_10266960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300028810\|Ga0307294_10348515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300028819\|Ga0307296_10557254	Not Available	627	Open in IMG/M
3300028875\|Ga0307289_10179229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	872	Open in IMG/M
3300031170\|Ga0307498_10431807	Not Available	525	Open in IMG/M
3300031251\|Ga0265327_10024154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3578	Open in IMG/M
3300031251\|Ga0265327_10042563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2437	Open in IMG/M
3300031544\|Ga0318534_10304486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	918	Open in IMG/M
3300031681\|Ga0318572_10809858	Not Available	557	Open in IMG/M
3300033551\|Ga0247830_10366126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1117	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.74%
Host-Associated	Host-Associated	43.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.65%
Plants	Host-Associated → Plants	43.26%
Aquatic	Environmental → Aquatic	7.09%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.77%
Sediment	Environmental → Aquatic → Sediment	7.09%
Roots	Host-Associated → Plants → Roots	1.42%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.50%
Loam	Environmental → Terrestrial → Soil → Loam	17.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.42%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.71%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.71%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.13%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.13%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.42%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.71%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.71%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.60%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.26%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.26%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.84%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.13%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.13%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.13%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.42%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.42%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.71%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1045159252	3300000956	Soil	MLDTEGEELVDAAEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTASESLPASFGSKLTLR*
C688J35102_1196832011	3300002568	Soil	MTFDADGQELVDAREVAARLGMKNARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWEATSGAAVVSGSGRG*
C688J35102_1203951232	3300002568	Soil	MTFDADGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDAHAESMRPAATGRA*
Ga0063454_1000634402	3300004081	Soil	MTLDTEGEELVDAVEVAARLGLKNARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGRSTSPSLAPAFGAVLALPE*
Ga0062595_1002607091	3300004479	Soil	MTFDADGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWPQVELWDANAGAVLPAAGRA*
Ga0062595_1009107681	3300004479	Soil	MTTFDTDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDAHAETMRPTASGRA*
Ga0062595_1014843321	3300004479	Soil	MTFDTDGQELVDAREVAARLGMKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWDATSGAA
Ga0070676_105560041	3300005328	Miscanthus Rhizosphere	MTFDTTFDSDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDAHVGHDASRPAGSSTR*
Ga0070683_1002013773	3300005329	Corn Rhizosphere	MTFDTDGQELVDAHEVAARLGLKNARTVLDLRVHRLGFPSPVARHGRALLWSWAQVERWDARADATRPTARA*
Ga0066388_1009144583	3300005332	Tropical Forest Soil	MAIEMEGTELVDAREVAERLGLRSARVVLDLRVHRLGFPAPVGRQGRALLWSWPDVERWDVGQRVT*
Ga0066388_1013224081	3300005332	Tropical Forest Soil	ELVDAREVAERLGLRSARVVLDLRVHRLGFPAPVGRQGRALLWSWPDVERWDVGQRVT*
Ga0066388_1050031371	3300005332	Tropical Forest Soil	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWGSTTSESFPSAFGARLTLD*
Ga0066388_1067834821	3300005332	Tropical Forest Soil	MPIDIEGAELVDAREVAERLGLRSARVVLDLRIHRLGFPAPVGRQGRSLLWSWPEVELWDVGQRVTGR*
Ga0068869_1009371121	3300005334	Miscanthus Rhizosphere	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDARATHPDPNHAGSATR*
Ga0068868_1005115392	3300005338	Miscanthus Rhizosphere	MTTFDTDGQELVDAREVAERLGLKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDARAAYGLASGGRSTR*
Ga0070661_1014902151	3300005344	Corn Rhizosphere	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVARHGRALLWSWAQV
Ga0070668_1020747992	3300005347	Switchgrass Rhizosphere	MTFDTTFDSDGQELVDAREVAARLGFKNARAVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDAHGGQARAGSSTR*
Ga0070675_1018566431	3300005354	Miscanthus Rhizosphere	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDAR
Ga0070671_1016715532	3300005355	Switchgrass Rhizosphere	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDARGPQHRSPVAHYDGSSTR*
Ga0070709_106954292	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSESLPSAFGARLTLD*
Ga0070713_1018336252	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSGSLPSAFGARLTLD*
Ga0070711_1007596092	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWG
Ga0070678_1005997852	3300005456	Miscanthus Rhizosphere	MTFDTTFDTDGQELVDAREVAARLGFKNARAVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDAHAGHAPARPAGS
Ga0070681_114053762	3300005458	Corn Rhizosphere	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVARHGRALLWSWAQVERWDARADATRPTARA*
Ga0070707_1022800772	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTLDTDGQELVDAREVAARLGLKNARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVERWDANAGASLPSTPARS*
Ga0070679_1015694312	3300005530	Corn Rhizosphere	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVARHGRALLWSWAQVERWDARADAMRPTARA*
Ga0070665_1003860082	3300005548	Switchgrass Rhizosphere	MTFDTDGDELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVELWDATGGSLRAASAGRA*
Ga0070665_1018116512	3300005548	Switchgrass Rhizosphere	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDAH
Ga0070664_1008935781	3300005564	Corn Rhizosphere	MTFDTTFDSDGQELVDAREVAARLGFKNARAVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDAAGHASA
Ga0068856_1022450001	3300005614	Corn Rhizosphere	MMLDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVELWDANSGASLAAAPLR
Ga0068861_1010641552	3300005719	Switchgrass Rhizosphere	AHEPMTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDARGPEHRSPVANYDGLASEGRSTR*
Ga0066903_1011293442	3300005764	Tropical Forest Soil	MTFDSDGEELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWPQVAMWDAEGGSLRPAPAGRPG*
Ga0066903_1014546873	3300005764	Tropical Forest Soil	MAINLEGAELVDAHEVAARLGLRSARVVLDLRIHRLGFPAPVGRQGRALLWSWHEVELWGVEQRTTCDGRITAMRASD*
Ga0066903_1020588212	3300005764	Tropical Forest Soil	MTFDADGQELVDAREVAARLGLKSARAVLDLRVHRLGFPAPVGRQGRALLWSWPQVELWDTKAGASLPYAGRA*
Ga0066903_1067186042	3300005764	Tropical Forest Soil	MTIDTDDQELVDAHEVARRLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWTQVEIWGITREQQRAV*
Ga0068870_106567141	3300005840	Miscanthus Rhizosphere	MTFDTTFDSDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDAAGHASARPAGSSTR*
Ga0068863_1012463102	3300005841	Switchgrass Rhizosphere	MTFDTDGAELVDAREVAARLGLKNARTVLDLRVHRLGFPAPVGRQGRALLWSWPQVALWDEHAGARLPSTSGRS*
Ga0068858_1011815742	3300005842	Switchgrass Rhizosphere	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDARGPQHRSPMAHYDGSSTR*
Ga0070717_117840911	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VAERLGLKNPRAVLDLRIHRLGFPAPVGRQGRTLLWSWAQVELWGATTSPPEVTAGDARLTVR*
Ga0070717_119196501	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGST
Ga0075363_1003201292	3300006048	Populus Endosphere	MTYDTDGEELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVARWDASAGAMLPSSSGRI*
Ga0075028_1002571201	3300006050	Watersheds	MTTFETDGQELVDAREVAARLGLKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDSRAPHSPRYDGLAPDGRATR*
Ga0075026_1005491931	3300006057	Watersheds	MTTFETDGQELVDAREVAARLGLKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDSRAPHSPRYDGLAPDGRAT
Ga0075017_1003335351	3300006059	Watersheds	MMLDTDHDDLVDAREVASRLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEIWGTTVSEAMPTTLGAKLTLG*
Ga0075017_1012550171	3300006059	Watersheds	AFMTLDTDGEELIDAREVAERLGLKNARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGTTASEALPASSFTNKLTLR*
Ga0075017_1013105501	3300006059	Watersheds	MVLDTDGEELVDAQEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSESLPSAFGARVTLD*
Ga0075015_1002653311	3300006102	Watersheds	MMLDTDHDDLVDAREVASRLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQ
Ga0075021_100070318	3300006354	Watersheds	VIAIDDYGDELVDAREVADRLGLKNARFVLDLRIHRLGFPDPVGRKGRSMLWSWQQVESWGATTELSLPPRPGDRGSRAA*
Ga0074049_119153172	3300006580	Soil	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWDSTTSGSLPSAFGARVTLD*
Ga0075430_1003353802	3300006846	Populus Rhizosphere	MRIDTGEEELVDAGEVATRLGFKNARVVLDLRMHHLGFPAPIGRQGRSLLWSWRQIERWDTSGAARPREHVAR*
Ga0075430_1013315502	3300006846	Populus Rhizosphere	MRIDTGEEELVDAGEVATRLGFKNARAVLDLRMHHLGFPPPIGRQGRSLLWSWRQVERWDTSGAARPREHVAR*
Ga0075430_1013444592	3300006846	Populus Rhizosphere	MDRTDDDLLDASEIAARLGLKDSREVLNLRLHRLGFPAPVARRQRALVWSWSSVETWAMT
Ga0075425_1002864242	3300006854	Populus Rhizosphere	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSESLPSAFGTRVTLD*
Ga0068865_1006878151	3300006881	Miscanthus Rhizosphere	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDARATHPAPNHAGSATR*
Ga0075424_1008547462	3300006904	Populus Rhizosphere	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSATSESLPPAFGTRVTLD*
Ga0074063_132287992	3300006953	Soil	VDAREVAARLGLKNARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDADAESMRPAASGRA*
Ga0079219_112795852	3300006954	Agricultural Soil	MVLDTDGEELVDAHEVAARLGLKSARMVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSESLPSAFGARLTLD*
Ga0111539_109414421	3300009094	Populus Rhizosphere	MTFDTTFDSDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDARVGHDPSRPAGSSTR*
Ga0105245_103052521	3300009098	Miscanthus Rhizosphere	MTTFDTDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDAHAETM
Ga0105245_124918372	3300009098	Miscanthus Rhizosphere	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDAHAESMRPAASGRA*
Ga0066709_1044110991	3300009137	Grasslands Soil	MTLDTDGQELIDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWG
Ga0105243_108423892	3300009148	Miscanthus Rhizosphere	MTFDTTFDTDGQELVDAREVAARLGFKNARAVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDAHGGQARAGSSTR*
Ga0105238_130575411	3300009551	Corn Rhizosphere	QGERNHMTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVARHGRALLWSWAQVERWDARADAMRPTARA*
Ga0105249_121606322	3300009553	Switchgrass Rhizosphere	MVLDTDGEELVDAQEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSGSLPSAFGARLTLD*
Ga0126313_101394203	3300009840	Serpentine Soil	MTFETDGQELVDAREVATRLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDARAGQAGSSTR*
Ga0126380_117242832	3300010043	Tropical Forest Soil	MTTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVELWDARADRSRADHAGSSTR*
Ga0126311_100364513	3300010045	Serpentine Soil	MTFETDGQELVDAREVATRLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDAGAGQAGSSTR*
Ga0126382_110248102	3300010047	Tropical Forest Soil	MTTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWPDVERWDVGQRVT*
Ga0134125_100522962	3300010371	Terrestrial Soil	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSGSLPAACGARLTLD*
Ga0134125_121824841	3300010371	Terrestrial Soil	MTFDTDGQELVDAHEVAARLGLKNARTVLDLRVHRLGFPSPVARHGRALLWSWAQVERWDARADAMRPTARA*
Ga0105239_133196531	3300010375	Corn Rhizosphere	TFDSDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDAHGGQARAGSSTR*
Ga0126381_1002329964	3300010376	Tropical Forest Soil	MTIDTDDQELVDAQEVARRLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGFTRQQERPVA*
Ga0134122_109150182	3300010400	Terrestrial Soil	DGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSGSLPSAFGARLTLD*
Ga0105246_106827652	3300011119	Miscanthus Rhizosphere	MTFDTTFDSDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDAHGGQARAGSSTR*
Ga0105246_117233172	3300011119	Miscanthus Rhizosphere	MAGNGRHDTGEAHEPMTFDTDGQELVDAREVAERLGLKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDAGHASARPAGSSTR*
Ga0150985_1079003661	3300012212	Avena Fatua Rhizosphere	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDAHAESMRPAATGRA*
Ga0150985_1195340483	3300012212	Avena Fatua Rhizosphere	MTLDTEGEELVDAVEVAARLGLKNARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWG
Ga0150985_1201763882	3300012212	Avena Fatua Rhizosphere	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDARGAQHPSPVANYDGLASEGRSTR*
Ga0150984_1117986463	3300012469	Avena Fatua Rhizosphere	LGLKNARTVLGLRVHRLGFPAPVGRQGRALLWSWSQVEMWGRSTSPSLAPAFGAVLALPE
Ga0150984_1132093002	3300012469	Avena Fatua Rhizosphere	MTLDSEGEELVDAVEVAARLGLKNARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGHSTSPSLAPAFGAVLALPE*
Ga0164300_101601802	3300012951	Soil	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDARATHPNPNHAGSATR*
Ga0164300_105184741	3300012951	Soil	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDAHADSMRPAASGRA*
Ga0164298_108837541	3300012955	Soil	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDADAESMRPAASGRA*
Ga0164303_105261232	3300012957	Soil	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQGELWDARATHAQSNHAGSATR*
Ga0164299_105455322	3300012958	Soil	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDADAESMR
Ga0164299_106066942	3300012958	Soil	MVLDTDGEELVDAQEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSESLTSAFGARVTLD*
Ga0164302_107349921	3300012961	Soil	MVLDTDGEELIDAREIAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTASEALPP
Ga0164309_101913611	3300012984	Soil	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTS
Ga0164309_101919523	3300012984	Soil	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDADAETMRPTASGRA*
Ga0164304_111789962	3300012986	Soil	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDARATHPHPNHAGSATR*
Ga0164306_101062252	3300012988	Soil	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAPVEMWDADAESMRPAASGRA*
Ga0164305_118941181	3300012989	Soil	FGGTPREHTNHMTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDAHAESMRPAASGRA*
Ga0157370_117083241	3300013104	Corn Rhizosphere	RQRRIRPQGRQQGERNHMTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVARHGRALLWSWAQVERWDARADAMRPTARA*
Ga0157378_117159662	3300013297	Miscanthus Rhizosphere	VAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDAHAETMRPTASGRA*
Ga0157378_120991471	3300013297	Miscanthus Rhizosphere	TDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSGSLPSAFGARLTLD*
Ga0157378_121838771	3300013297	Miscanthus Rhizosphere	MVLDTDGEELIDAREIAARLGLKSARTVLDLRVHRLGFPASVGRQGRALLWSWSQVEMWG
Ga0157375_108269723	3300013308	Miscanthus Rhizosphere	MTTFDTDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDAHAETMRRPTASGRA*
Ga0157375_115844072	3300013308	Miscanthus Rhizosphere	MAGNGRHDHWGAHEPMTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDARGPQHRSPVAHYDGSSTR*
Ga0157375_119272242	3300013308	Miscanthus Rhizosphere	MTFDTTFDSDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDAHAGHASARPAGSSPAGSAT
Ga0163163_132281292	3300014325	Switchgrass Rhizosphere	AHEVAARLGLKSARTVLDLRVHRLGFPAPVGGQGRALLWSWSQVEMWGSTTSGSLPSAFGARLTLD*
Ga0157380_108738962	3300014326	Switchgrass Rhizosphere	MTFDTTFDTDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWAWAQAELWDAHAGHDPSRPAGSSTR*
Ga0132258_121400561	3300015371	Arabidopsis Rhizosphere	MTFDTTFDTDGQELVDAREVAARLGFKNARAVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDAHAGHASARPAGSSTR*
Ga0163161_110320822	3300017792	Switchgrass Rhizosphere	DAREVAERLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDARATHPDPNHAGSATR
Ga0187785_104273531	3300017947	Tropical Peatland	VTVDIEGEELIDAREVAARLGLKNPRTVLDLRIHRLGFPAPVGRQGRTLLWSWPQVELWGTATGTFDASGEARLTLR
Ga0190266_103958082	3300017965	Soil	MMIDITGEELVDAREVAERLGLKNARAVLDLRIHRLGFPAPVGRQGRSLLWSWPQVELWDSTARSLAR
Ga0187777_102265621	3300017974	Tropical Peatland	MTVDIDGEELIDAREVAARLGLKNPRTVLDLRIHRLGFPAPVGRQGRTLLWSWPQVELWGTTAGSFDPSGEARLTVR
Ga0190274_100834092	3300018476	Soil	MMIDITGEELVDAREVAERLGLKNARAVLDLRIHRLGFPAPVGRQGRSLLWSWPQVELWDTTARSLAP
Ga0190274_112594052	3300018476	Soil	MTIDITGEELVDAREVAERLGMKNARAVLDLRIHRLGFPPPVGRQGRALLWSWPQVELWDATARSLAR
Ga0190274_138715492	3300018476	Soil	MVIDITGEELVDAREVAERLGLRNARAVLDLRIHRLGFPAPVGRQGRALLWSWPQVELWDSTARSLAR
Ga0126371_105971612	3300021560	Tropical Forest Soil	MAINLEGAELVDAHEVAARLGLRSARVVLDLRIHRLGFPAPVGRQGRALLWSWHEVELWGVEQRTTCDGRITAMRASD
Ga0207685_106937131	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSESLPPAFGARLT
Ga0207699_106363342	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSESLPSAFAARLTLD
Ga0207645_107625011	3300025907	Miscanthus Rhizosphere	MTFDTTFDSDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDAAGH
Ga0207707_112197111	3300025912	Corn Rhizosphere	DMTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVARHGRALLWSWAQVERWDARADATRPTARA
Ga0207695_106253471	3300025913	Corn Rhizosphere	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVARHGRALLWSWAQVERWDARADATRPTARA
Ga0207663_104863622	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTTSESLPSAFGARL
Ga0207659_113385211	3300025926	Miscanthus Rhizosphere	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDARATHPDPNHAGSATR
Ga0207644_109759121	3300025931	Switchgrass Rhizosphere	MTTFDTDGQELVDAREVAERLGLKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDARAAYGLASGGRSTR
Ga0207689_106664022	3300025942	Miscanthus Rhizosphere	MTFDTTFDSDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDAGHASARPAGSSTR
Ga0207661_107789312	3300025944	Corn Rhizosphere	MTFDTDGQELVDAHEVAARLGLKNARTVLDLRVHRLGFPSPVARHGRALLWSWAQVERWDARADAMRPTARA
Ga0207658_115629191	3300025986	Switchgrass Rhizosphere	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDARGPQHRSPVAHYDGSSTR
Ga0207641_114123761	3300026088	Switchgrass Rhizosphere	MMDMDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVELWDANSGASLAAAPLRS
Ga0207675_1018118021	3300026118	Switchgrass Rhizosphere	ARLGFKNARAVLDLRVHRLGFPAPVARQGRALLWSWAQVEMWDARGPEHRSPVANYDGLASEGRSTR
Ga0209068_100030648	3300027894	Watersheds	VIAIDDYGDELVDAREVADRLGLKNARFVLDLRIHRLGFPDPVGRKGRSMLWSWQQVESWGATTELSLPPRPGDRGSRAA
Ga0209068_104883401	3300027894	Watersheds	MVLDTDGEELVDAQEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEM
Ga0209068_105404611	3300027894	Watersheds	VRIDSEGEELVDAGEAALRLGFKSARTVLDLRMHHLGFPAPVGRMGRSLLWSWSQIERWDADGAGPRPRERVAG
Ga0268266_121218161	3300028379	Switchgrass Rhizosphere	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMW
Ga0268266_122036271	3300028379	Switchgrass Rhizosphere	MTFDTDGDELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVELWDATGGSLRAASAGRA
Ga0268265_119054202	3300028380	Switchgrass Rhizosphere	QMTFDTTFDSDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVELWDATGGSLRAASAGRA
Ga0307288_102596341	3300028778	Soil	MTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDALATHAHSNHAGSA
Ga0307306_102669602	3300028782	Soil	YSSVTAFGAMAGNGRHDHRGAHELMTFDIDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDARGLQHRSPVANYDGSSTR
Ga0307294_103485151	3300028810	Soil	HDHWGAHEPMTFDTDGQELVDAREVAERLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDARGLQHRSPVANYDGSSTR
Ga0307296_105572541	3300028819	Soil	MTLDTEGEELVDAAEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVELWGSNASEELPPSFAALLTLR
Ga0307289_101792291	3300028875	Soil	MVLDTDGEELIDAREIAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWGSTASEALPPSFGAKLTL
Ga0307498_104318071	3300031170	Soil	MTFDTDGQELVDAREVAARLGLKNARTVLDLRVHRLGFPAPVGRQGRALLWSWSQVEMWDATSGAAVAPRLPAHG
Ga0265327_100241544	3300031251	Rhizosphere	MTFDTDGQELVDAREVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWDAGAESARATAAGRA
Ga0265327_100425632	3300031251	Rhizosphere	MTTFDTDGQELVDAREVAARLGLKNARTVLDLRVHRLGFPSPVARQGRALLWSWAQVEMWDAHAETMRPTASGRA
Ga0318534_103044862	3300031544	Soil	MVLDTDGEELVDAHEVAARLGLKSARTVLDLRVHRLGFPAPVGRQGRALLWSWAQVEMWGSTTSESFPSAFGARLTLD
Ga0318572_108098581	3300031681	Soil	MTFDADGQELIDAREVAARLGLKSARTVLDLRVHRLGFPAPVARQGRALLWSWAQVERWDTCGGHRSGASTR
Ga0306925_120799581	3300031890	Soil	MTTIDTDGEELVDAKEVAERLGFRNARAVLDLRMHHLGFPAPIGRQGRSLLWSWNQVERWELSGALPRQRERLAG
Ga0247830_103661262	3300033551	Soil	MTFDTTFDSDGQELVDAREVAARLGFKNARTVLDLRVHRLGFPAPVARQGRALLWSWAQVELWDAHTGHDPSRPAGSSTR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F053328

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences