Metagenome / Metatranscriptome Family F053272

Basic Information
Family ID	F053272
Family Type	Metagenome / Metatranscriptome
Number of Sequences	141
Average Sequence Length	48 residues
Representative Sequence	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMS
Number of Associated Samples	120
Number of Associated Scaffolds	141

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.42 %
% of genes near scaffold ends (potentially truncated)	98.58 %
% of genes from short scaffolds (< 2000 bps)	92.20 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Most Common Taxonomy
Group	Bacteria (98.582 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.149 % of family members)
Environment Ontology (ENVO)	Unclassified (27.660 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.298 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 20.00% β-sheet: 0.00% Coil/Unstructured: 80.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 141 Family Scaffolds
PF09650	PHA_gran_rgn	48.23
PF12071	DUF3551	26.95
PF01609	DDE_Tnp_1	1.42
PF14659	Phage_int_SAM_3	0.71
PF00072	Response_reg	0.71
PF13620	CarboxypepD_reg	0.71
PF02545	Maf	0.71
PF07592	DDE_Tnp_ISAZ013	0.71

COG ID	Name	Functional Category	% Frequency in 141 Family Scaffolds
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.42
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.42
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.42
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.42
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.42
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.42
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.58 %
Unclassified	root	N/A	1.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.58 %
Unclassified	root	N/A	1.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.58 %
Unclassified	root	N/A	1.42 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	93.62 %
Unclassified	root	N/A	1.42 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	90.78 %
Unclassified	root	N/A	1.42 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.71 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.71 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	43.26 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	30.50 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	4.96 %
Unclassified	root	N/A	1.42 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.71 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	43.26 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	21.99 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	4.96 %
Unclassified	root	N/A	1.42 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.71 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	43.26 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	4.96 %
Unclassified	root	N/A	1.42 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	0.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.71 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	43.26 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	4.96 %
Unclassified	root	N/A	1.42 %
Myxococcales bacterium 68-20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	0.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.71 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	43.26 %
Rhodovulum sp. PH10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	4.96 %
Unclassified	root	N/A	1.42 %
Myxococcales bacterium 68-20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	0.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.71 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZN2CUW02FZ1TH	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300000443\|F12B_10502517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	745	Open in IMG/M
3300000955\|JGI1027J12803_108804935	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300003911\|JGI25405J52794_10063579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	800	Open in IMG/M
3300004479\|Ga0062595_102112441	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300005148\|Ga0066819_1027923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	505	Open in IMG/M
3300005181\|Ga0066678_10116412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1636	Open in IMG/M
3300005181\|Ga0066678_10855948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	597	Open in IMG/M
3300005187\|Ga0066675_11319552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	531	Open in IMG/M
3300005332\|Ga0066388_100351891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2119	Open in IMG/M
3300005332\|Ga0066388_101169136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1311	Open in IMG/M
3300005332\|Ga0066388_105968498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300005337\|Ga0070682_101721959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300005363\|Ga0008090_10180835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300005455\|Ga0070663_100340562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1211	Open in IMG/M
3300005456\|Ga0070678_101628088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300005467\|Ga0070706_101013614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	765	Open in IMG/M
3300005471\|Ga0070698_102070654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300005555\|Ga0066692_10945499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	528	Open in IMG/M
3300005713\|Ga0066905_100345028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1187	Open in IMG/M
3300005713\|Ga0066905_101802577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	564	Open in IMG/M
3300005764\|Ga0066903_103187120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	887	Open in IMG/M
3300005764\|Ga0066903_103599601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	834	Open in IMG/M
3300005842\|Ga0068858_102308074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	532	Open in IMG/M
3300005937\|Ga0081455_10176561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1621	Open in IMG/M
3300006028\|Ga0070717_10533232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1062	Open in IMG/M
3300006028\|Ga0070717_11175045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300006028\|Ga0070717_12069313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	512	Open in IMG/M
3300006034\|Ga0066656_10469153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	820	Open in IMG/M
3300006042\|Ga0075368_10311579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	680	Open in IMG/M
3300006603\|Ga0074064_11716220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673	Open in IMG/M
3300006800\|Ga0066660_11314754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300006953\|Ga0074063_10038842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300007255\|Ga0099791_10377615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	681	Open in IMG/M
3300009137\|Ga0066709_104163360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	527	Open in IMG/M
3300009143\|Ga0099792_10344031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	898	Open in IMG/M
3300009156\|Ga0111538_12001790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	728	Open in IMG/M
3300009156\|Ga0111538_13936739	Not Available	513	Open in IMG/M
3300009553\|Ga0105249_13100581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300010046\|Ga0126384_11566970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300010047\|Ga0126382_10629869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	888	Open in IMG/M
3300010047\|Ga0126382_10637580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	883	Open in IMG/M
3300010047\|Ga0126382_12181555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300010359\|Ga0126376_11305558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	746	Open in IMG/M
3300010359\|Ga0126376_11885706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300010360\|Ga0126372_12331264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	585	Open in IMG/M
3300010360\|Ga0126372_12714984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	547	Open in IMG/M
3300010361\|Ga0126378_10200404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2072	Open in IMG/M
3300010375\|Ga0105239_10982701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	970	Open in IMG/M
3300010375\|Ga0105239_12137585	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300010376\|Ga0126381_104929297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300010868\|Ga0124844_1096343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1121	Open in IMG/M
3300011271\|Ga0137393_10274641	Not Available	1433	Open in IMG/M
3300012202\|Ga0137363_11239441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	633	Open in IMG/M
3300012207\|Ga0137381_11544092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300012212\|Ga0150985_102350586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	555	Open in IMG/M
3300012350\|Ga0137372_10298464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1250	Open in IMG/M
3300012353\|Ga0137367_10062893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2769	Open in IMG/M
3300012358\|Ga0137368_10289733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1112	Open in IMG/M
3300012362\|Ga0137361_10258536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1587	Open in IMG/M
3300012362\|Ga0137361_10597065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1012	Open in IMG/M
3300012582\|Ga0137358_11118939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300012685\|Ga0137397_10865539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	670	Open in IMG/M
3300012918\|Ga0137396_10224147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1385	Open in IMG/M
3300012929\|Ga0137404_10102593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2311	Open in IMG/M
3300012930\|Ga0137407_11832575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	578	Open in IMG/M
3300012958\|Ga0164299_10974625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	622	Open in IMG/M
3300012987\|Ga0164307_10323124	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300012987\|Ga0164307_10385279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1028	Open in IMG/M
3300013306\|Ga0163162_11293927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	828	Open in IMG/M
3300013308\|Ga0157375_13819516	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300014969\|Ga0157376_11950654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	624	Open in IMG/M
3300015242\|Ga0137412_10504476	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	926	Open in IMG/M
3300015264\|Ga0137403_10655751	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	912	Open in IMG/M
3300015373\|Ga0132257_101951012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	756	Open in IMG/M
3300016341\|Ga0182035_10424348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1122	Open in IMG/M
3300016387\|Ga0182040_10529145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	946	Open in IMG/M
3300017965\|Ga0190266_10407681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	757	Open in IMG/M
3300018072\|Ga0184635_10344884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	573	Open in IMG/M
3300018076\|Ga0184609_10352788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	686	Open in IMG/M
3300018082\|Ga0184639_10212412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1026	Open in IMG/M
3300018429\|Ga0190272_11426789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	698	Open in IMG/M
3300018433\|Ga0066667_10197676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1474	Open in IMG/M
3300018469\|Ga0190270_10906076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	900	Open in IMG/M
3300018476\|Ga0190274_10694485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1061	Open in IMG/M
3300021478\|Ga0210402_11568067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300021560\|Ga0126371_12221759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300022694\|Ga0222623_10024514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2269	Open in IMG/M
3300025922\|Ga0207646_10670809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	928	Open in IMG/M
3300025925\|Ga0207650_10412748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1119	Open in IMG/M
3300025931\|Ga0207644_10196400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1589	Open in IMG/M
3300025960\|Ga0207651_12032560	All Organisms → cellular organisms → Bacteria → Proteobacteria	516	Open in IMG/M
3300025961\|Ga0207712_10118815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1997	Open in IMG/M
3300026121\|Ga0207683_10136625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2207	Open in IMG/M
3300027671\|Ga0209588_1047544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1387	Open in IMG/M
3300027846\|Ga0209180_10099838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1653	Open in IMG/M
3300027903\|Ga0209488_10407988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1005	Open in IMG/M
3300028379\|Ga0268266_10897529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	857	Open in IMG/M
3300028707\|Ga0307291_1036556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1162	Open in IMG/M
3300028719\|Ga0307301_10092170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	956	Open in IMG/M
3300028719\|Ga0307301_10200107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	648	Open in IMG/M
3300028768\|Ga0307280_10184864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	731	Open in IMG/M
3300028784\|Ga0307282_10387239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300028796\|Ga0307287_10202050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	754	Open in IMG/M
3300028824\|Ga0307310_10351698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	724	Open in IMG/M
3300029636\|Ga0222749_10367097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	757	Open in IMG/M
3300031091\|Ga0308201_10258174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	603	Open in IMG/M
3300031184\|Ga0307499_10168439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	654	Open in IMG/M
3300031421\|Ga0308194_10288730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	564	Open in IMG/M
3300031543\|Ga0318516_10138168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1396	Open in IMG/M
3300031561\|Ga0318528_10030115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2664	Open in IMG/M
3300031573\|Ga0310915_10412243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	959	Open in IMG/M
3300031719\|Ga0306917_10297686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1245	Open in IMG/M
3300031724\|Ga0318500_10195220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	968	Open in IMG/M
3300031744\|Ga0306918_10141316	All Organisms → cellular organisms → Bacteria	1768	Open in IMG/M
3300031751\|Ga0318494_10372302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	827	Open in IMG/M
3300031764\|Ga0318535_10025806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2311	Open in IMG/M
3300031764\|Ga0318535_10116805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1176	Open in IMG/M
3300031778\|Ga0318498_10143704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1085	Open in IMG/M
3300031798\|Ga0318523_10102408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1405	Open in IMG/M
3300031819\|Ga0318568_10466530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	787	Open in IMG/M
3300031833\|Ga0310917_11082352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	535	Open in IMG/M
3300031859\|Ga0318527_10169612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	919	Open in IMG/M
3300031859\|Ga0318527_10340040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300031893\|Ga0318536_10083882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1582	Open in IMG/M
3300031912\|Ga0306921_10918919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	992	Open in IMG/M
3300031912\|Ga0306921_12118043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300031946\|Ga0310910_10111749	All Organisms → cellular organisms → Bacteria	2044	Open in IMG/M
3300031947\|Ga0310909_10183200	All Organisms → cellular organisms → Bacteria	1734	Open in IMG/M
3300032035\|Ga0310911_10289742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	941	Open in IMG/M
3300032035\|Ga0310911_10505109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	701	Open in IMG/M
3300032051\|Ga0318532_10013188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2576	Open in IMG/M
3300032055\|Ga0318575_10037788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2157	Open in IMG/M
3300032060\|Ga0318505_10122831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1190	Open in IMG/M
3300032060\|Ga0318505_10482089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300032063\|Ga0318504_10234348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	862	Open in IMG/M
3300032091\|Ga0318577_10109085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1300	Open in IMG/M
3300032180\|Ga0307471_101170245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	934	Open in IMG/M
3300032261\|Ga0306920_103028484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	633	Open in IMG/M
3300033290\|Ga0318519_10205275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1125	Open in IMG/M
3300033551\|Ga0247830_10348998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1143	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.40%
Host-Associated	Host-Associated	15.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.56%
Plants	Host-Associated → Plants	15.60%
Aquatic	Environmental → Aquatic	2.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.22%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.67%
Sediment	Environmental → Aquatic → Sediment	2.84%
Roots	Host-Associated → Plants → Roots	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.21%
Loam	Environmental → Terrestrial → Soil → Loam	11.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.42%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.42%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.71%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.71%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.71%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.15%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.06%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.26%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.84%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.13%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.42%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.71%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.71%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.71%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.71%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.71%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F053272

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_08493270	2170459003	Grass Soil	VNKPSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVIGLA
F12B_105025172	3300000443	Soil	VTKLSTPHSGPAQIGPAVLGASSFACADVLSKVVLLD
JGI1027J12803_1088049352	3300000955	Soil	RLPQIGPALLGAFSFACADILTRVTFKAGADALTMSSARCVLGLAMLY
JGI25405J52794_100635791	3300003911	Tabebuia Heterophylla Rhizosphere	VTKPSTSHSGPAQIGPAVLGASSFSCADVLGKVVLVQGADVLTMCAVRAVLGVAFLFGWL
Ga0062595_1021124411	3300004479	Soil	VTQLDTQTAGSRLAMIGPALLGASSFACADVLAKITLKDGADVLTAATVRGFVGLALL
Ga0066819_10279231	3300005148	Soil	VTSLTTSRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVLTMSAIRG
Ga0066678_101164124	3300005181	Soil	VTKPSNSQAGSRLAQIGPALLGASSFACADVLSKVALNDGADALTISAVRAVL
Ga0066678_108559481	3300005181	Soil	VTKPSTSQAGSRLTQIGPALLGASSFACADVLSKVALNDGADALTISAVRAVL
Ga0066675_113195521	3300005187	Soil	VTKPSNSQAGSRLAQIGPALLGASSFACADVLSKVALNDGADALTISAVRAVLGLAMLFAWLRL
Ga0066388_1003518914	3300005332	Tropical Forest Soil	VISPSTPPAGSRLAQIGPALLGASSFACADVLAKVPLRDGADVLTV
Ga0066388_1011691361	3300005332	Tropical Forest Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMS
Ga0066388_1059684981	3300005332	Tropical Forest Soil	VSKSSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADV
Ga0070682_1017219591	3300005337	Corn Rhizosphere	VTSSPTPRAGSHLVQTGPALLGAASFACADVLAKVVLNDGADVLTLSAIRG
Ga0008090_101808352	3300005363	Tropical Rainforest Soil	VTKLSIPQTGSGPAQIGPAVLGASSFACADVLSKVVLIEG
Ga0070663_1003405621	3300005455	Corn Rhizosphere	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVLTMSAIRGALSIAILY
Ga0070678_1016280882	3300005456	Miscanthus Rhizosphere	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVLTMSAI
Ga0070706_1010136142	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VNKLSPPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLT
Ga0070698_1020706541	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VNKLSPPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRA
Ga0066692_109454991	3300005555	Soil	VTKPSNSQAGSRLAQIGPALLGACSFACADVLSKVALNDGADALTISVVR
Ga0066905_1003450281	3300005713	Tropical Forest Soil	VTKSSTPQAGSRLAQIGPALLGASSFACADVLSKVALNAGADALTISVVRAV
Ga0066905_1018025771	3300005713	Tropical Forest Soil	VNKLSTPHAGSRLAQIGPALLGASSFACADVSSKVVLIAGADVLTMSVVRAVLGVAMLFVWLRLAPPATA
Ga0066903_1031871201	3300005764	Tropical Forest Soil	VNKLSPPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDG
Ga0066903_1035996011	3300005764	Tropical Forest Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVLGLALLLG
Ga0068858_1023080741	3300005842	Switchgrass Rhizosphere	VTSSPTPRAGSHLVQTGPALLGAASFACADVLAKVVLNDG
Ga0081455_101765611	3300005937	Tabebuia Heterophylla Rhizosphere	VNKPSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIEGADVLTMSAVRAVLGVAILL
Ga0070717_105332323	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VNKLSTPHVGSGPTQIGPAVLGASSFACADVLSKVVL
Ga0070717_111750451	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VTKPSTPQAGSRLAQIGPALLGASSFACADVLSKVALNAGADALTISVVRAVLGLGM
Ga0070717_120693131	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VNKPSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVIGLAIL
Ga0066656_104691533	3300006034	Soil	VTKPSTSQAGSRLTQIGPALLGASSFACADVLSKVALNDGADALTISAVRAVLGLAMLFAWLRL
Ga0075368_103115792	3300006042	Populus Endosphere	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKVVL
Ga0074064_117162202	3300006603	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIEGADVLTMSAVRAVIG
Ga0066660_113147541	3300006800	Soil	VTPLPTSHAGSRLVPIAPALLGASSFSAADVLSKITLNAGADALTVSAVRG
Ga0074063_100388421	3300006953	Soil	VNKLSTPHVGKGPAQIGPAVLGASSFACADVLSKVVLIEGADVLTMSAVRAVIGLAILL
Ga0099791_103776151	3300007255	Vadose Zone Soil	VTELSAPQAGSRLAQIGPALLGASSFACADVLAKVVLNAGTDVLTLSAIRGVLGLAI
Ga0066709_1041633601	3300009137	Grasslands Soil	VTKPSNSQAGSRLAQIGPALLGASSFACADVLSKVALNDGADALTISAVRAVLGLAMLFAWLR
Ga0099792_103440313	3300009143	Vadose Zone Soil	VISPTTPRAGLAQIGPALLGASSFACADVLAKVVLN
Ga0111538_120017902	3300009156	Populus Rhizosphere	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVL
Ga0111538_139367391	3300009156	Populus Rhizosphere	VTSPTTPRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVL
Ga0105249_131005811	3300009553	Switchgrass Rhizosphere	VTKLSTPEAEFRLAQVGPAVLGASSFACADVLVKVVLIAGAGVLTMSAVRAVVGVAMLFVWLKLAPAAA
Ga0126384_115669701	3300010046	Tropical Forest Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSA
Ga0126382_106298691	3300010047	Tropical Forest Soil	VNKLSTPPAGSRLAQIGPALLGASSFACADVSSKVVLIAGADVLTMSVVRA
Ga0126382_106375801	3300010047	Tropical Forest Soil	VNKLSTPHAGSRLAQIGPALLGASSFACADVSSKVVLIAGADVLTMSVVRAV
Ga0126382_121815551	3300010047	Tropical Forest Soil	VNQLSTPHAGSRLAQIGPALLGASSFACADVSSKVVLIAGADVLTMSVV
Ga0126376_113055583	3300010359	Tropical Forest Soil	VISPSTPQAGSRLAQIGPALLGASSFDCADVLSKVVLIDGADVLTMS
Ga0126376_118857062	3300010359	Tropical Forest Soil	VNKLSTPHAGSRLAQIGPALLGASSFACADVSSKIVLIAGADVLTMSVV
Ga0126372_123312641	3300010360	Tropical Forest Soil	VTQQPIPPAGLAPLGPVLLGASSFACADVLGKVVLNAGADVLTMSVARGGLGLAL
Ga0126372_127149842	3300010360	Tropical Forest Soil	VSQLSTQHAASRLAMIGPVLLGATSFACADVLSKAVLKAGADVLTMSAV
Ga0126378_102004045	3300010361	Tropical Forest Soil	VSKLSTPHAGSRLAQIGPALLGASSFACADVSSKVVLIAGADVLTMSVVRAVVGLAMLFAWLRL
Ga0105239_109827011	3300010375	Corn Rhizosphere	VTKLSTPEADFRLAQVGPAVLGASSFACADVLVKVVLIAGAGVL
Ga0105239_121375851	3300010375	Corn Rhizosphere	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVLTMSAIRG
Ga0126381_1049292971	3300010376	Tropical Forest Soil	LTQLSTPHAGSRLAQIGPALLGASSFACADVLSKVVLIDGADVLTMS
Ga0124844_10963433	3300010868	Tropical Forest Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLVDG
Ga0137393_102746412	3300011271	Vadose Zone Soil	VRLLRTLRFNVTQLDTQTAGSRLAMIGPALLGASSFACADVLAKITLKDGADVLTVATVR
Ga0137363_112394411	3300012202	Vadose Zone Soil	VNKLSPPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTM
Ga0137381_115440922	3300012207	Vadose Zone Soil	VNKPSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLI
Ga0150985_1023505861	3300012212	Avena Fatua Rhizosphere	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVLTMSAIRGVLSIA
Ga0137372_102984642	3300012350	Vadose Zone Soil	VNKHSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVLGVA
Ga0137367_100628931	3300012353	Vadose Zone Soil	VNKHSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAV
Ga0137368_102897331	3300012358	Vadose Zone Soil	VNKHSTPHVDSGPAQIGPAVLGASSFACADVLSKVVLIDGADVL
Ga0137361_102585364	3300012362	Vadose Zone Soil	VNKLSPPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAV
Ga0137361_105970651	3300012362	Vadose Zone Soil	VTHPNSPHAGSRLAQIGPALLGASSFACADVSSKVVLIAGADVLTMS
Ga0137358_111189391	3300012582	Vadose Zone Soil	VTKLSTSEADFRLAQIGPALLGASSFACADVLVKVVLIAGAGVLTMSAIRAVVGVA
Ga0137397_108655392	3300012685	Vadose Zone Soil	VTQLSTPQAGSRLPQIGPALLGASSFACADVVSKVA
Ga0137396_102241471	3300012918	Vadose Zone Soil	VNKLSPPHVGSGPAQIGPAVLGASSFACADVLSKVVL
Ga0137404_101025935	3300012929	Vadose Zone Soil	VTKLSTSHDGPAQIGPAVLGASSFACADVLSKVVLI
Ga0137407_118325751	3300012930	Vadose Zone Soil	VTQLSTPQAGSRLPQIGPALLGASSFACADVVSKVALTDGADVLTISTVRAVIG
Ga0164299_109746251	3300012958	Soil	VTKLSTPEAEFRLAQVGPAVLCASSFACADVLVKVVLIAGAGVLTMSAV
Ga0164307_103231243	3300012987	Soil	VTSPPTPRAGSHLVQTGPALLGAASFACADVLAKVVLNDGADVLTLSA
Ga0164307_103852791	3300012987	Soil	VTKLSTSEADFRLAQIGPALLGASSFACADVLVKVVLIAGAGVLTMSSI
Ga0163162_112939271	3300013306	Switchgrass Rhizosphere	VTKLSTPEADFRLAQVGPAVLGASSFACADVLVNVVLIAGAGVLTMSAVRAVVGVAMLF
Ga0157375_138195161	3300013308	Miscanthus Rhizosphere	VTSLTPPRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVLTMSAI
Ga0157376_119506542	3300014969	Miscanthus Rhizosphere	VTSSPTPRAGSHLVQTGPALLGAASFACADVLAKVVLND
Ga0137412_105044761	3300015242	Vadose Zone Soil	VISPTTPRAGLAQIGPALLGASSFACADVLAKVVLNAGADVLTLSAIRGV
Ga0137403_106557511	3300015264	Vadose Zone Soil	VNKPSTPHVGSGPAQIGPAVLGASSFACADVLSKVALIDGADVLT
Ga0132257_1019510122	3300015373	Arabidopsis Rhizosphere	VTSLTPPRAGSRLAQIGPALLGASSFACADVPGKVVLNDGADVLTM*
Ga0182035_104243481	3300016341	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTM
Ga0182040_105291451	3300016387	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLVDGADVLTMSAVRAVLGLAI
Ga0190266_104076813	3300017965	Soil	VTSLTTSRAGSRLAQIGPALLGASSFACADVLAKVVLNAGADVLTLSAIR
Ga0184635_103448841	3300018072	Groundwater Sediment	VTSLTSPRAGSRLAQIGPALLGATSFACADVVGKVV
Ga0184609_103527881	3300018076	Groundwater Sediment	VISPTTPRAGLAQIGPALLGASSFACADVLAKVVLNAGADVLTLSAIRGVLGLAIL
Ga0184639_102124121	3300018082	Groundwater Sediment	VTSPTTPRAGLAQIGPALLGASSFACADVLAKVVLNAGADVLTLSAIRGVL
Ga0190272_114267892	3300018429	Soil	VTSLTTPRAGSRLVQIGPALLGASSFACADVLGKVVLNDG
Ga0066667_101976761	3300018433	Grasslands Soil	VNKLSPPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVIGLAILLG
Ga0190270_109060762	3300018469	Soil	VTSLTTSRAGSRLAQIGPALLGASSFACADVLGKVVLND
Ga0190274_106944851	3300018476	Soil	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKVVLND
Ga0210402_115680671	3300021478	Soil	VTKLSTPEAEFRLAQVGPAVLGASSFACADVLVKVVLIAGAGVLTMSAVRAVVGVAMLF
Ga0126371_122217591	3300021560	Tropical Forest Soil	VTKLSIPQTGSGPAQIGPAVLGASSFACADVLSKVVLIEGADVLTM
Ga0222623_100245141	3300022694	Groundwater Sediment	VISPTTPRAGLAQIGPALLGASSFACADVLAKVVLNAGADVLTLSAIRGMLGLAI
Ga0207646_106708093	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VNKLSPPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMS
Ga0207650_104127481	3300025925	Switchgrass Rhizosphere	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVLTMSAIRGALSIV
Ga0207644_101964003	3300025931	Switchgrass Rhizosphere	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKV
Ga0207651_120325602	3300025960	Switchgrass Rhizosphere	VTSPPTPRAGSHLVQTGPALLGAASFACADVLAKVVLNDGADVLT
Ga0207712_101188153	3300025961	Switchgrass Rhizosphere	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVLTMSAIRGVLSIAIL
Ga0207683_101366251	3300026121	Miscanthus Rhizosphere	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVLTMSAIR
Ga0209588_10475441	3300027671	Vadose Zone Soil	VNKLSPPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSA
Ga0209180_100998381	3300027846	Vadose Zone Soil	VNKLSPPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDTSAQANEE
Ga0209488_104079881	3300027903	Vadose Zone Soil	VISPTTPRAGLAQIGPALLGASSFACADVLAKVVLNAGADVLTLS
Ga0268266_108975291	3300028379	Switchgrass Rhizosphere	VTSLTTPRAGSRLAQIGPALLGAYSFACADVLGKVVLND
Ga0307291_10365561	3300028707	Soil	VISPTTPRAGLAQIGPALLGASSFACADVLAKVVLNAGADV
Ga0307301_100921703	3300028719	Soil	VTSPTTPRAGLAQIGPALLGASSFACADVLAKVVLNAGADVLTLSAI
Ga0307301_102001071	3300028719	Soil	VISPTTPRAGLAQIGPALLGASSFACADVLAKVVLNA
Ga0307280_101848641	3300028768	Soil	VTSPTTPRAGLAQIGPALLGASSFACADVLAKVVLNAGA
Ga0307282_103872391	3300028784	Soil	VTKLSTSEADFRLAQIGPALLGASSFACADVLVKVVLIA
Ga0307287_102020501	3300028796	Soil	VTSPTTPRAGLAQIGPALLGASSFACADVLAKVVLNAGADVLTLSA
Ga0307310_103516982	3300028824	Soil	VISPTTPRAGLAQIGPALLGASSFACADVLAKVVLNAGADVLTLSAIRGVLGLA
Ga0222749_103670971	3300029636	Soil	VNKLSTPHVGKGPAQIGPAVLGASSFACADVLSKVVLIEGADV
Ga0308201_102581742	3300031091	Soil	VTSLTTPRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVLTMSAIRGALSI
Ga0307499_101684391	3300031184	Soil	VTSLTTPRAGSRLAQIGPALLGATSFACADVVGKVVLNDGAD
Ga0308194_102887302	3300031421	Soil	VISRTTPGAGLAQIGPALLGASSFACADVLAKVVLNAGADAL
Ga0318516_101381681	3300031543	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVL
Ga0318528_100301151	3300031561	Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMS
Ga0310915_104122431	3300031573	Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVL
Ga0306917_102976861	3300031719	Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVLGLAI
Ga0318500_101952202	3300031724	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVIGLAI
Ga0306918_101413164	3300031744	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVIGLAILF
Ga0318494_103723021	3300031751	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVV
Ga0318535_100258065	3300031764	Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVR
Ga0318535_101168053	3300031764	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLVDGADVLTMSAVRAVLGLAILLG
Ga0318498_101437043	3300031778	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLVDGADVLTMS
Ga0318523_101024083	3300031798	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLLDGADVLTMSAVRAV
Ga0318568_104665301	3300031819	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVIGLAILFG
Ga0310917_110823521	3300031833	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVIG
Ga0318527_101696123	3300031859	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKV
Ga0318527_103400401	3300031859	Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLT
Ga0318536_100838822	3300031893	Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAV
Ga0306921_109189193	3300031912	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLI
Ga0306921_121180432	3300031912	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVI
Ga0310910_101117491	3300031946	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLT
Ga0310909_101832001	3300031947	Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLSMS
Ga0310911_102897421	3300032035	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLVDGADVLTMSAVRAVLGLAIL
Ga0310911_105051092	3300032035	Soil	VTKRSIPQTGSGPAQIGPAVLGASSFACADVLSKVV
Ga0318532_100131886	3300032051	Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVL
Ga0318575_100377886	3300032055	Soil	MLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAVRAVIGLAILFG
Ga0318505_101228312	3300032060	Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLI
Ga0318505_104820892	3300032060	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLVDGADVLTM
Ga0318504_102343481	3300032063	Soil	VTKRSIPQTGSGPAQIGPAVLGASSFACADVLSKVVLIEGADVLTMSAVRAVLG
Ga0318577_101090852	3300032091	Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKV
Ga0307471_1011702451	3300032180	Hardwood Forest Soil	VNKLSPPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGADVLTMSAV
Ga0306920_1030284841	3300032261	Soil	VSKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLIDGAD
Ga0318519_102052751	3300033290	Soil	VNKLSTPHVGSGPAQIGPAVLGASSFACADVLSKVVLVDGADVLTMSAVRAV
Ga0247830_103489981	3300033551	Soil	VTSLTTSRAGSRLAQIGPALLGASSFACADVLGKVVLNDGADVLTMSA

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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