Metagenome / Metatranscriptome Family F052794

Basic Information
Family ID	F052794
Family Type	Metagenome / Metatranscriptome
Number of Sequences	142
Average Sequence Length	57 residues
Representative Sequence	ALFFVLAVVFVGIAAAAAEAVDNEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP
Number of Associated Samples	124
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	33.33 %
% of genes near scaffold ends (potentially truncated)	1.41 %
% of genes from short scaffolds (< 2000 bps)	2.11 %
Associated GOLD sequencing projects	120
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Most Common Taxonomy
Group	Unclassified (95.775 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.901 % of family members)
Environment Ontology (ENVO)	Unclassified (23.944 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.338 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 56.10% β-sheet: 0.00% Coil/Unstructured: 43.90%
Feature Viewer

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SCOP family	SCOP domain	Representative PDB	TM-score
f.55.1.1: Photosystem II antenna protein-like	d5b5ec_	5b5e	0.85961
c.49.2.0: automated matches	d6rdps_	6rdp	0.85093
a.24.2.0: automated matches	d2d4ua1	2d4u	0.84557
f.55.1.1: Photosystem II antenna protein-like	d5b5eb_	5b5e	0.84062
a.24.2.0: automated matches	d4z9ha_	4z9h	0.8267

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF04542	Sigma70_r2	49.30
PF04545	Sigma70_r4	23.94
PF01547	SBP_bac_1	4.23
PF00561	Abhydrolase_1	1.41
PF12730	ABC2_membrane_4	0.70
PF02656	DUF202	0.70
PF06841	Phage_T4_gp19	0.70
PF00009	GTP_EFTU	0.70
PF01391	Collagen	0.70
PF13456	RVT_3	0.70
PF00520	Ion_trans	0.70
PF00353	HemolysinCabind	0.70
PF00005	ABC_tran	0.70
PF01039	Carboxyl_trans	0.70
PF00528	BPD_transp_1	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	49.30
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	49.30
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	49.30
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	49.30
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	0.70
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	0.70
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.70
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	0.70

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.77 %
All Organisms	root	All Organisms	4.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.77 %
cellular organisms	root	All Organisms → cellular organisms	3.52 %
Viruses	superkingdom	All Organisms → Viruses	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.77 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.77 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.70 %

Scaffold	Taxonomy	Length	IMG/M Link
3300001139\|JGI10220J13317_10161078	All Organisms → Viruses → Predicted Viral	1291	Open in IMG/M
3300005558\|Ga0066698_10044661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2771	Open in IMG/M
3300005560\|Ga0066670_10255352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1063	Open in IMG/M
3300011003\|Ga0138514_100001766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2757	Open in IMG/M
3300012204\|Ga0137374_10006296	All Organisms → cellular organisms → Bacteria	14120	Open in IMG/M
3300014150\|Ga0134081_10047874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1272	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.17%
Host-Associated	Host-Associated	21.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.65%
Plants	Host-Associated → Plants	21.83%
Aquatic	Environmental → Aquatic	3.52%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.75%
Sediment	Environmental → Aquatic → Sediment	2.82%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.41%
Freshwater	Environmental → Aquatic → Freshwater	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.04%
Loam	Environmental → Terrestrial → Soil → Loam	13.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.11%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.11%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.41%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.11%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.41%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.41%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.63%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.23%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.23%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.23%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.11%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.11%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.11%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.11%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.11%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.41%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.41%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.41%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.41%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.41%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.41%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.41%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.41%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.70%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.70%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300001205	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300027036	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1001819802	3300000956	Soil	VLGIAFIGIAAAAAEALDTNKGLIVVVIAAGAIALWLLSLSMRNLRRKPR*
JGI10220J13317_101610783	3300001139	Soil	GGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKRRP*
C688J13580_10626161	3300001205	Soil	AFAGIAAAAAEAVDTEPGLLVVVIAAGLIGLWLLTLAVRNLRR*
JGI25404J52841_101144932	3300003659	Tabebuia Heterophylla Rhizosphere	MAPPPPRHSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAICLWLLTLSIRNLRKPRP*
Ga0062593_1025601012	3300004114	Soil	MAPPPPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKRRP*
Ga0062590_1015948912	3300004157	Soil	PPPPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKRRP*
Ga0062594_1034141741	3300005093	Soil	MAPPPPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP*
Ga0066683_104178083	3300005172	Soil	VAPPPPRPALGALFFVLGLAFVGIAAAAAEALDSNKGLIVVVIAAGAIALWLLSLSMRNLRRRRP*
Ga0066673_106528082	3300005175	Soil	VLAIAFVGIAAAAAEAVNSNRGLVVLVVAAGALALWLLTLALRNLRKPRP*
Ga0066678_105975162	3300005181	Soil	VAPPPPRPALGALFFVLGLAFIGIAAAAAEAVDSNKGLVVVVIAAGAIALWLLSLSMRNLRRRRP*
Ga0066678_109844232	3300005181	Soil	LLLAIAFIGIAAAAAEAVDTNKGLVVVVVAAGAIALWLLTLAIRNLRNPPH*
Ga0065707_105844602	3300005295	Switchgrass Rhizosphere	VLGIAFIGIATAAAEAVDSNAGLVVVVIAAGVIALWLFSLSIRNLRKPRP*
Ga0070690_1001755173	3300005330	Switchgrass Rhizosphere	AFAGIAAAAAEAVDTQLGLLVVVIAAGAIALWFLTLAIRNLRKPQA*
Ga0066388_1000692025	3300005332	Tropical Forest Soil	MAPPPPRHSLGALFFALAVVFGGIAAAAAEAVDTEPGLLVVVVAAGAIGLWLLTLSIRNLRKPRP*
Ga0066388_1016362932	3300005332	Tropical Forest Soil	MAPPPPRHSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIALWLLTLSIRNLRRPRS*
Ga0066388_1021281812	3300005332	Tropical Forest Soil	LLSIAFVGIAAAAAEAVDSDKGLVVVVIAAGALALWLLTLAIRNLRRKRT*
Ga0068868_1013668202	3300005338	Miscanthus Rhizosphere	LLLAIAFAGIAAAAAEAVDTNHGVVVIVVAAGVIALWFLSLAVRNLRRQRP*
Ga0070705_1000886042	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VLSIAFVGIAAAAAGAVDTNHGLVVLVVAAGAIALWLLTLALRNLRRPRP*
Ga0066687_105757592	3300005454	Soil	FLLLAIAFVGIAAAAAEAVDTNKGLVVVVVAAGAIALWLLSLAIRNLRKPPL*
Ga0070684_1000889524	3300005535	Corn Rhizosphere	VLAVAFAGIAAAAVEAVDTNHGVVVIVVAAGVIALWFLSLAVRNLRRQRP*
Ga0066695_105832331	3300005553	Soil	VAPPPPRPALGALFFVLGIAFIGIAAAAAEAVDSNKGLIVVAIAAGVIALWLLSLSMRNLRKRRP*
Ga0066661_109468252	3300005554	Soil	LLLAIAFIGIAAAAAEAVDTNKGLVVVVVAAGAIALWLLTLAIRNLRKPPH*
Ga0066698_100446613	3300005558	Soil	VAPPPPRPALGALFFVLGIAFIGIAAAAAEAVDSDKGLIVVAIAAGVIALWLLSLSMRNLRKRRP*
Ga0066670_102553522	3300005560	Soil	MPSPPPRPALGALFFVLAVAFVGIAAAAVQAVDSNHGLVVVVVAAGALALWLLTLALRNLRRPPS*
Ga0066905_1006211642	3300005713	Tropical Forest Soil	MAPPPPRHSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIALWLLTLSIRNLRRPRP*
Ga0066905_1022816572	3300005713	Tropical Forest Soil	HSLGALFFVLAVVFGGIAAAAAEAVDTEPGLLVVVVAAGAIGLWLLTLSIRNLRKPRP*
Ga0068866_108017991	3300005718	Miscanthus Rhizosphere	AFAGIAAAAAEAVDTNHGVVVIVVAAGVIALWFLSLAVRNLRRQRP*
Ga0066903_1000226993	3300005764	Tropical Forest Soil	VAPPPPRPALGVLFLVLAIGFAGIAAAAAKAVGTQLGLLVVVIAAGVIALWFLTLAVRNLRKPQA*
Ga0066903_1048039952	3300005764	Tropical Forest Soil	MAPPPPRHSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP*
Ga0066903_1065747072	3300005764	Tropical Forest Soil	MAQPPPRHSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIALWLLTLSIRNLRRPRS*
Ga0081540_100220619	3300005983	Tabebuia Heterophylla Rhizosphere	MAPPPPRHSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAISLWLLTLSIRNLRKPRP*
Ga0081540_10120121	3300005983	Tabebuia Heterophylla Rhizosphere	FLVLAIAFAGIAAAAAEAVDTQPGLVVVVIAAGLIGLWLLSLAVRNLRRPRP*
Ga0066651_106167722	3300006031	Soil	VAPPPPRPALGALFFVLGIAFIGIAVAAAEAVDSNKGLIVVVIAAGAIALWLLSLSMRNLRRRRP*
Ga0066696_105796732	3300006032	Soil	LGALFLVLAIAFVGIAAAAAEAVNSNHGLVVLVIAAGAIALWLLTLSLRNLRRKQP*
Ga0070716_1008527382	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AIGFAGIAAAAAEAVDTQLGLLVVVIAAGVIALWFLTLAIRNLRKPQA*
Ga0074053_119781902	3300006575	Soil	MAPPPPRPALGALFFVLAVAFVGIAAAAAEAVDTNKGLLVVVVAAGAIALWLLTLAVRNLRRKPGS*
Ga0074059_121671593	3300006578	Soil	MAPPPPRPALGALFFVLAVAFVGIAAAAAEAVDTNPGLLVVVVAAGAIALWLFSLSFRNLRRPRP*
Ga0079222_122575801	3300006755	Agricultural Soil	VAPRPALGALFFVLALAFVGIAAAAAEAVDSNKGLVVVVIAAGAIALWLLTLAVRNLRRPRS*
Ga0079221_115027752	3300006804	Agricultural Soil	VLAIAFAGIAAAAAEAVDSNLGLVVVVLAAGVIALWFLTLAIRNLRRQRP*
Ga0079220_103615862	3300006806	Agricultural Soil	LVLAVAFVGIAAAAAQAVDTNKGLVVLVIAAGALALWLLTLAVRNLRRPRP*
Ga0075421_1007821541	3300006845	Populus Rhizosphere	MASPPPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP*
Ga0075433_116882483	3300006852	Populus Rhizosphere	MAPPPPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRN
Ga0075425_1000376586	3300006854	Populus Rhizosphere	VGIAAAAAEAVDSNKGLVAVVIAAGALALWLLTLAIRNLRRKQP*
Ga0111539_123658761	3300009094	Populus Rhizosphere	MAPPPPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKP
Ga0105243_125312772	3300009148	Miscanthus Rhizosphere	AIAFAGIAAAAAEAVDTNHGVVVIVVAAGVIALWFLSLAVRNLRRQRP*
Ga0075423_101514293	3300009162	Populus Rhizosphere	MASPPPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGVWLLTLSIRNLRKPRP*
Ga0075423_112331832	3300009162	Populus Rhizosphere	AALGALFLLLSIAFVGIAAAAAEAVDSNKGLVVVVIAAGALALWLLTLAIRNLRRKQP*
Ga0105238_119971182	3300009551	Corn Rhizosphere	FLVLAVAFVGIAAAAAEAVDTNVGLVVVVIAAGVIALWLFSLSIRNLRKPPS*
Ga0126374_106707102	3300009792	Tropical Forest Soil	LLSIAFVGIAAAAAEAVDSNKGLVVVVIAAGALALWLLTLAIRNLRRKRT*
Ga0126313_101336044	3300009840	Serpentine Soil	VAPPPPRPSLGALFFVLAIVFAGIAAAAAEAVDEEPGLLVVVVAAVAIGVWLLTLAARNLRRRRP*
Ga0126313_101382073	3300009840	Serpentine Soil	MAPPPPRPSLGALFFVLAIVFVGIAAAAAEAVDNEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP*
Ga0126313_102486152	3300009840	Serpentine Soil	MAPPPARPALGALFLVLAILFGGIAAASAEAVDEEPGVIVVTIAAGAIGLWLLTLAVRNLKKTSR*
Ga0126313_104901812	3300009840	Serpentine Soil	VAPPPPRYSLGALFFVLAIVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP*
Ga0126308_110048472	3300010040	Serpentine Soil	IAFAGIAATALEAVDDEPGVVVIVVGAGAIALWLLSLAGRNLRRTRR*
Ga0126312_100128122	3300010041	Serpentine Soil	VAPPPPRPALGGLFLVLAIAFAGIAATALEAVDDEPGVVVIVVGAGAIALWLLSLAGRNLRRTRR*
Ga0126380_100244562	3300010043	Tropical Forest Soil	VLAIGFAGIAAAAAKAVGTQLGLLVVVIAAGVIALWFLTLAVRNLRKPQA*
Ga0126380_105811622	3300010043	Tropical Forest Soil	VAPPPPRHSLGALFFVLAVVFGGIAAAAAEAVDTEPGLLVVVVAAGAIGLWLLTLSIRNLRKPRP*
Ga0134070_101663171	3300010301	Grasslands Soil	VTTIALGALFFVLGLAFIGIAAAAAEAVDSNKGLIVVVIAAGAIALWLLSLSMRNLRRRRP*
Ga0134086_102681832	3300010323	Grasslands Soil	VLAIAFVGIAAAAAEAVNSNHGLVVLVVAAGALALWLLTLALRNLRKP*
Ga0134086_103483191	3300010323	Grasslands Soil	VAPPRPRPALGALFFVLGLAFIGIAAAAAEALDSNKGLIVVVIAAGAIALWLLSLSMRNLRRRRP*
Ga0134086_104844872	3300010323	Grasslands Soil	VLAIAFLGIAAAAAEAVDPNKGLVVLVVAARAIALWLLTLALRNL
Ga0126372_117473821	3300010360	Tropical Forest Soil	PPPRHSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIALWLLTLSIRNLRRPRS*
Ga0134126_120075331	3300010396	Terrestrial Soil	LGALFLVLAVAFVGIAAAAAQAVDTNKGLVVLVIAAGALALWLLTLAVRNLRRPRP*
Ga0134127_127494571	3300010399	Terrestrial Soil	LGALFLVLAIAFVGIAAAAAEAVDTNKGLVIVVVAAGAIALWMLSLSIRNLRKPPS*
Ga0138514_1000017663	3300011003	Soil	MAPPPPRPALGALFFVLAVAFVGIAAAAAEAVDTNRGLVVVVVAAGALALWLLTLALRNLRRRQP*
Ga0126317_103706252	3300011332	Soil	SLGALFFVLAVVFAGIAAAAAEAVDDEPGLVVVVVAAGAIGLWLLTLSARNLRRRRP*
Ga0137365_109227061	3300012201	Vadose Zone Soil	MAPPPPRPALGALFFVLAVAFVGIAAAAAEAVDTNRGLVVVVVAAGALALWLLTLALRNLRRKQP*
Ga0137365_111943822	3300012201	Vadose Zone Soil	VAPPPPRPALGALFFVLGIAFIGIAAAAAEAVDSNKGLIVVVVAAGAIALWLLSLSMRNLRRKRS*
Ga0137374_1000629618	3300012204	Vadose Zone Soil	VLGIAFVGIAAAAAEAVDTDRGLVVVAIAAGAIALWLLSLALRNLRR*
Ga0137378_118361141	3300012210	Vadose Zone Soil	LAIAFVGIAAAAAEAVNSNRGLVVLVVAAGALALWLLTLAARNLRKPRS*
Ga0137370_103367643	3300012285	Vadose Zone Soil	VAPPPPRPALGALFFLLGIAFIGIAAAAAEALDTNKGLIVVVIAAGAIALWLLSLSMRNLRKRRP*
Ga0157315_10251842	3300012508	Arabidopsis Rhizosphere	MAPPPPRYSLGALFFVLALVFGGSAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP*
Ga0157338_10300022	3300012515	Arabidopsis Rhizosphere	VAPPPPRHSLGALFFVLAVVFVGIAAAAVEAVDSEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP*
Ga0137373_100298936	3300012532	Vadose Zone Soil	VLAIAFLGIAAAAAEAVDTNKGLVVLVVAAGAIALWLLTLALRNLRRKPP*
Ga0157285_100848192	3300012897	Soil	LFLVLAIAFVGIAAAAAEAVDSNKGLVVLVIAAGAIALWMLSLSIRNLRKPPS*
Ga0157292_102562992	3300012900	Soil	VAPPPPRHSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWHLTLSIRNLRKRRP*
Ga0157283_100853951	3300012907	Soil	VAPPPPRHSLGALFFVLAIVFGGIAAAAAEALDSEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRS*
Ga0157297_100026404	3300012914	Soil	PPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKRRP*
Ga0157302_100174813	3300012915	Soil	VFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKRRP*
Ga0162652_1000126723	3300012941	Soil	VAPPPPRQSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIR
Ga0164301_104848921	3300012960	Soil	LFLVLAIAFAGIAAAAAEAVDTQPSLVVVVIAAGLIGLWLLTLAVRNLRRPRP*
Ga0164304_118015111	3300012986	Soil	RPALGALFLLLAIGFAGIAAAAAEAVDTQLGLLVVVIAAGAIALWFLTLAIRNLRKPQA*
Ga0157374_108614262	3300013296	Miscanthus Rhizosphere	VGIAAAAAEAVDTNAGLVVVVIAAGVIALWLFSLALRNLRRQRS*
Ga0134081_100478743	3300014150	Grasslands Soil	GLAFIGIAAAAAEAVDSNKGLVVVVIAAGAIALWLLSLSMRNLRKRRP*
Ga0157380_125788472	3300014326	Switchgrass Rhizosphere	FAGIAAAAAEAVDTNHGVVVIVVAAGVIALWFLSLAVRNLRRQRP*
Ga0173480_112022691	3300015200	Soil	GIAAAAAEAVDTNAGLVVVVIAAGVIALWFFSLTIRNLRKPRS*
Ga0173478_100033945	3300015201	Soil	LAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKRRP*
Ga0132258_100824502	3300015371	Arabidopsis Rhizosphere	MAPPPPRHSLGALFFVLAVVFGGIAAAALEAVDTQPGLLVVVVAAGAIGLWLLTLSIRNLRKPRS*
Ga0132258_105454054	3300015371	Arabidopsis Rhizosphere	VLAVVFGGIAAAAAEAVDSEPGLLVVVVAAGAIGLWLLTLSIRNLRKPRP*
Ga0132256_1032999232	3300015372	Arabidopsis Rhizosphere	MAPPPPRHSLGALFFVLAVVFGGIAAAALEAVDTQPGLLDVVVAAGAIGLWLLTLSIRNLRKPRS*
Ga0132257_1018950693	3300015373	Arabidopsis Rhizosphere	MAPPPPRYSLGALFFVLAVVFGGIAAAALEAVDTQPGLLVVVVAAGAIGLWLLTLS
Ga0134069_12760972	3300017654	Grasslands Soil	VAPPPPRPALGALFFVLGLAFVGIAAAAAEALDSNKGLIVVVIAAGAIALWLLSLSMRNLRRRRP
Ga0187775_102284511	3300017939	Tropical Peatland	PALGALFLLLSIAFVGIAAAAAEAVDSNKGLVVVVVAAGALALWLLTLAVRNLRKPRP
Ga0187785_101296451	3300017947	Tropical Peatland	VGIGAAAAEAVDSNKGLVVVVVAAGVLALWLLTLAVRNLRRNPGS
Ga0187776_100183252	3300017966	Tropical Peatland	VAPPPPRPALGVLFLFLAIAFVGIGAAAAEAVDTNKGLIVVVVAAGVIALWLLTLALRNLRRKQGS
Ga0184620_101150021	3300018051	Groundwater Sediment	LVLAIAFAGIAAAAVEAVDDEPGVVVVVVAAGSIGLWLLTLAVRNLKRRQP
Ga0184617_11856812	3300018066	Groundwater Sediment	FLVLAIAFAGIAAAAGEAVSEEPGLVVVVVAAGTIALWLLSLALRNLRKRPG
Ga0184618_102121662	3300018071	Groundwater Sediment	VLAIAFLGIAAAAAEAVDTNKGLVVLVVAAGAIALWLLTLALRNLRRKPP
Ga0184635_100254341	3300018072	Groundwater Sediment	MAPPPARPALGALFLVLAILFGGIAAASAEAINEEPTLIVVTIAAGAIGLWLLTLAIRNLRKTSR
Ga0066655_105340901	3300018431	Grasslands Soil	LGALFFVLGIAFIGIAAAAAEAVDSNKGLIVVAIAAGVIALWLLSLSMRNLRKRRP
Ga0066667_108643152	3300018433	Grasslands Soil	LFLLLSIAFVGIAAAAAEAVDTNKGLVVVVVAAGAIALWLLSLAIRNLRKPPP
Ga0173481_100106843	3300019356	Soil	MAPPPPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKRRP
Ga0173482_104878521	3300019361	Soil	SLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIDLWLLTLSIRNLRKRRP
Ga0193715_10119411	3300019878	Soil	VAFVGIAAAAGQAVDSNHGLVVVVVAAGALALWLLTLALRNLRRPPS
Ga0193728_11740121	3300019890	Soil	FLVLAIAFVGIAAAAAEAVDTNHGLAVVVVAAGALALWLLTLALRNLRRKQP
Ga0193699_102306621	3300021363	Soil	LGALFLVLAIAFGGIAAAAAEAVDTEPGLVVVVIAAGLIGLWLLSLAVRNLRKPPP
Ga0247788_10725311	3300022901	Soil	YSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKRRP
Ga0247794_100113691	3300024055	Soil	MAPPPPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKRR
Ga0207692_105127692	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LLAIGFAGIAAAAAEAVDTQLGLLVVVIAAGAIALWFLTLAIRNLRKPQA
Ga0207660_109654112	3300025917	Corn Rhizosphere	LLLAIAFAGIAAAAAEAVDTNHGVVVIVVAAGVIALWFLSLAVRNLRRQRP
Ga0207646_109604751	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	AFVGIAATAAGAVDTNHGLVVLVVAAGAIALWLLTLALRNLRRPRP
Ga0207687_107217753	3300025927	Miscanthus Rhizosphere	MAPPPPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP
Ga0207670_101365123	3300025936	Switchgrass Rhizosphere	VGIAAAAAEAVDTNAGLVVVVIAAGVIALWLFSLALRNLRRQRS
Ga0207661_115065542	3300025944	Corn Rhizosphere	AAAAEAVDTQLGLVVVVIAAGVIAIWFLSLAVRNLRKPRV
Ga0207712_114528931	3300025961	Switchgrass Rhizosphere	AIAFAGIAAAAAEAVDTNHGVVVIVVAAGVIALWFLSLAVRNLRRQRP
Ga0207676_125503502	3300026095	Switchgrass Rhizosphere	RPALGALFLVLGIAFVGIAAAAAEAVDTNLGLVVVVIAAGVIALWFFGLSIRNLRRPRP
Ga0209239_13560552	3300026310	Grasslands Soil	VAPPPPRPALGALFFVLGLAFIGISAAAAEAVDSNKGLIVVVIAAGAIALWLLSLSMRNLRKRRP
Ga0209159_11076683	3300026343	Soil	VAPPPPRPALGALFFVLGIAFIGIAAAAAEAVDSNKGLIVVAIAAGVIALWLLSLSMRNLRKRRP
Ga0209058_11416402	3300026536	Soil	VAPPPPRPALGALFFVLGIAFIGIAAAAAEAVDSDKGLIVVAIAAGVIALWLLSLSMRNLRKRRP
Ga0207467_10120822	3300027036	Soil	AVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKRRP
Ga0207428_109693351	3300027907	Populus Rhizosphere	GGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP
Ga0268266_114224101	3300028379	Switchgrass Rhizosphere	VAFVGIAAAAAEAVDTNVGLVVVVIAAGVIALWLFSLSIRNLRKPPS
Ga0307293_102294572	3300028711	Soil	AFAGIAAAAGEAINEEPGLVVVVVAAGAIALWLLSLALRNLRKRPG
Ga0307315_102949352	3300028721	Soil	TLGALFLVLAIAFVGIAAAAAEAVDTNKGLVVVVVAAGAIALWMLSLSIRNLRKPPS
Ga0307299_101460612	3300028793	Soil	LFLVLAIAFAGIAAAAGEAINEEPGLVVVVVAAGAIALWLLSLALRNLRKRPG
Ga0307284_101432581	3300028799	Soil	FGGIAAASAEAVNEEPGLVVVTIAAGAIGLWLLTLAVRNLRRTNR
Ga0307305_100162631	3300028807	Soil	GIAAAAAEAVDSNHGLVVVVVAAGAIALWLLTLSLRNLRKRRP
Ga0307310_102412471	3300028824	Soil	FLILAIAFVGIAAAAAEAVDSNHGLVVVVVAAGAIALWLLTLSLRNLRKRRP
Ga0307312_100437243	3300028828	Soil	MASPPPRLALGALFFVLAVAFVGIAAAAAEAVDTNRGLVVVVVAAGALALWLLTLALRNLRRKQP
Ga0307278_101533422	3300028878	Soil	MAPPPPRPALGALFFVLAVAFVGIAAAAAEAVDTNRGLVVVVVAAGALALWLLTLALRNLRRKQP
Ga0307304_100011567	3300028885	Soil	IAAAAAEAVDTQPSLVVVVIAAGLIGLWLLSLAVRNLRRPRP
Ga0308204_100617061	3300031092	Soil	RPALGALFLVLAIAFAGIAAAAVEAVDDEPGLVVVVVAAGSIGLWLLTLAVRNLKRRQP
Ga0307408_1024376691	3300031548	Rhizosphere	MAPPPPRPSLGALFFVLAIVFVGIAAAAAEAVDNEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP
Ga0310886_108194191	3300031562	Soil	LAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP
Ga0308176_109856962	3300031996	Soil	VAPPPPRHSLGALFFVLAVVFGGIAAAAAKAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP
Ga0308176_121213492	3300031996	Soil	TLFLVLAIAFAGIAAAAAEAVDSNHGLVVLVVAAGAIALWLLTLALRNLRRKPD
Ga0307416_1018852202	3300032002	Rhizosphere	MAPPPPRPSLGALFFVLAIVFVGIAGAAAEAVDNEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP
Ga0310906_100704221	3300032013	Soil	ATPPPRYSLGALFFVLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP
Ga0307415_1003784073	3300032126	Rhizosphere	ALFFVLAVVFVGIAAAAAEAVDNEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP
Ga0307415_1021015123	3300032126	Rhizosphere	MAPPPPRPSLGALFFVLAIVFVGIAAAAAEAVDNEPGLVVVVVAAGAIGLWLLTLSIRNL
Ga0314864_0053464_563_763	3300033805	Peatland	MAPPPPRPALGVLFLFLAIAFVGIGAAAAEAVDTNKGLIVVVVAAGVLALWLLTLALRNLRRKTGP
Ga0373959_0006464_44_196	3300034820	Rhizosphere Soil	VLAVVFGGIAAAAAEAVDTEPGLVVVVVAAGAIGLWLLTLSIRNLRKPRP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052794

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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