Metagenome / Metatranscriptome Family F052788

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F052788
Family Type	Metagenome / Metatranscriptome
Number of Sequences	142
Average Sequence Length	49 residues
Representative Sequence	MHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRRVPRPDRPDAA
Number of Associated Samples	119
Number of Associated Scaffolds	142

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.82 %
% of genes near scaffold ends (potentially truncated)	19.72 %
% of genes from short scaffolds (< 2000 bps)	90.14 %
Associated GOLD sequencing projects	117
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.648 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (10.563 % of family members)
Environment Ontology (ENVO)	Unclassified (19.718 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.451 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.17% β-sheet: 0.00% Coil/Unstructured: 68.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 142 Family Scaffolds
PF10127	RlaP	21.83
PF05731	TROVE	8.45
PF01661	Macro	6.34
PF01139	RtcB	4.23
PF00583	Acetyltransf_1	1.41
PF00291	PALP	0.70
PF02812	ELFV_dehydrog_N	0.70
PF01494	FAD_binding_3	0.70
PF00749	tRNA-synt_1c	0.70
PF01979	Amidohydro_1	0.70
PF01364	Peptidase_C25	0.70
PF02867	Ribonuc_red_lgC	0.70
PF13358	DDE_3	0.70

COG ID	Name	Functional Category	% Frequency in 142 Family Scaffolds
COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	Translation, ribosomal structure and biogenesis [J]	6.34
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	4.23
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.41
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.70
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	0.70
COG0334	Glutamate dehydrogenase/leucine dehydrogenase	Amino acid transport and metabolism [E]	0.70
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.70
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.70
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.65 %
Unclassified	root	N/A	25.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.65 %
Unclassified	root	N/A	25.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.65 %
Unclassified	root	N/A	25.35 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	33.80 %
Unclassified	root	N/A	25.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.23 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.41 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.70 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.70 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27.46 %
Unclassified	root	N/A	25.35 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.63 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.23 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.41 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.70 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.35 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	5.63 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.23 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.41 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.70 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.35 %
Thermomicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales	5.63 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	4.23 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.41 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.70 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.35 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples	5.63 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	4.23 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.41 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.70 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.35 %
uncultured Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	5.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.82 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	1.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.41 %
Alienimonas	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Alienimonas	0.70 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.35 %
uncultured Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	5.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.82 %
Methylobacterium sp. ap11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. ap11	1.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.41 %
Alienimonas californiensis	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Alienimonas → Alienimonas californiensis	0.70 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_105107867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1300	Open in IMG/M
3300004114\|Ga0062593_101205292	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300004156\|Ga0062589_102745566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300004157\|Ga0062590_100292871	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
3300004157\|Ga0062590_101405801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	694	Open in IMG/M
3300004643\|Ga0062591_100110055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1810	Open in IMG/M
3300005093\|Ga0062594_100193292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1407	Open in IMG/M
3300005179\|Ga0066684_10020522	All Organisms → cellular organisms → Bacteria	3430	Open in IMG/M
3300005179\|Ga0066684_10943344	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300005184\|Ga0066671_10136107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	1414	Open in IMG/M
3300005187\|Ga0066675_10191352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	1432	Open in IMG/M
3300005332\|Ga0066388_100270859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2340	Open in IMG/M
3300005332\|Ga0066388_100550727	Not Available	1783	Open in IMG/M
3300005332\|Ga0066388_106973166	Not Available	568	Open in IMG/M
3300005364\|Ga0070673_102402746	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300005434\|Ga0070709_11611264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300005440\|Ga0070705_101761232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525	Open in IMG/M
3300005445\|Ga0070708_100812276	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300005451\|Ga0066681_10245377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1085	Open in IMG/M
3300005471\|Ga0070698_101347946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	664	Open in IMG/M
3300005526\|Ga0073909_10586227	Not Available	549	Open in IMG/M
3300005529\|Ga0070741_10431495	Not Available	1205	Open in IMG/M
3300005530\|Ga0070679_101684299	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300005540\|Ga0066697_10357907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	850	Open in IMG/M
3300005545\|Ga0070695_100833299	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300005546\|Ga0070696_100649940	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300005560\|Ga0066670_10480527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	765	Open in IMG/M
3300005575\|Ga0066702_10375177	Not Available	866	Open in IMG/M
3300005576\|Ga0066708_10903451	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Alienimonas → Alienimonas californiensis	551	Open in IMG/M
3300005598\|Ga0066706_10502470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	966	Open in IMG/M
3300005615\|Ga0070702_101684358	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300005713\|Ga0066905_100970762	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300005764\|Ga0066903_101733745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1190	Open in IMG/M
3300005764\|Ga0066903_101884374	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300005764\|Ga0066903_106030941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	635	Open in IMG/M
3300005764\|Ga0066903_106156761	Not Available	627	Open in IMG/M
3300005764\|Ga0066903_107848066	Not Available	548	Open in IMG/M
3300006046\|Ga0066652_100485335	Not Available	1145	Open in IMG/M
3300006173\|Ga0070716_101323869	Not Available	583	Open in IMG/M
3300006176\|Ga0070765_101775060	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300006797\|Ga0066659_11143163	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300006800\|Ga0066660_10717429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	819	Open in IMG/M
3300006804\|Ga0079221_11506377	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300006852\|Ga0075433_10767938	Not Available	843	Open in IMG/M
3300006871\|Ga0075434_100197584	Not Available	2031	Open in IMG/M
3300006904\|Ga0075424_100985036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	899	Open in IMG/M
3300007076\|Ga0075435_100542418	Not Available	1007	Open in IMG/M
3300009012\|Ga0066710_100593438	Not Available	1679	Open in IMG/M
3300009012\|Ga0066710_100886500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1372	Open in IMG/M
3300009137\|Ga0066709_102245709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	751	Open in IMG/M
3300010043\|Ga0126380_11833759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	549	Open in IMG/M
3300010326\|Ga0134065_10430965	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300010337\|Ga0134062_10663872	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300010359\|Ga0126376_10249332	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1509	Open in IMG/M
3300010359\|Ga0126376_12448732	Not Available	569	Open in IMG/M
3300010360\|Ga0126372_12724808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. ap11	546	Open in IMG/M
3300010376\|Ga0126381_103236633	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300010396\|Ga0134126_10816498	Not Available	1053	Open in IMG/M
3300010396\|Ga0134126_11464714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	753	Open in IMG/M
3300012199\|Ga0137383_10699350	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300012200\|Ga0137382_10788894	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300012200\|Ga0137382_10806023	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300012202\|Ga0137363_11415682	Not Available	585	Open in IMG/M
3300012205\|Ga0137362_11132375	Not Available	665	Open in IMG/M
3300012207\|Ga0137381_10734850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	857	Open in IMG/M
3300012208\|Ga0137376_11165729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300012210\|Ga0137378_10238128	Not Available	1694	Open in IMG/M
3300012212\|Ga0150985_120264546	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300012351\|Ga0137386_11312405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	501	Open in IMG/M
3300012362\|Ga0137361_10418605	Not Available	1231	Open in IMG/M
3300012948\|Ga0126375_10374245	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300012955\|Ga0164298_10959117	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300012958\|Ga0164299_10662932	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300012960\|Ga0164301_11700188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300012975\|Ga0134110_10072831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1369	Open in IMG/M
3300012984\|Ga0164309_11490760	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300012988\|Ga0164306_10668998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	822	Open in IMG/M
3300013104\|Ga0157370_10237162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	1688	Open in IMG/M
3300013105\|Ga0157369_11404504	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300013307\|Ga0157372_11149208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	898	Open in IMG/M
3300014745\|Ga0157377_11164047	Not Available	595	Open in IMG/M
3300015357\|Ga0134072_10033971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1347	Open in IMG/M
3300015371\|Ga0132258_11339866	All Organisms → cellular organisms → Bacteria	1809	Open in IMG/M
3300016294\|Ga0182041_11865556	Not Available	558	Open in IMG/M
3300017659\|Ga0134083_10593695	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300017959\|Ga0187779_10031109	All Organisms → cellular organisms → Bacteria	3073	Open in IMG/M
3300017959\|Ga0187779_10479243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	821	Open in IMG/M
3300017959\|Ga0187779_10748068	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300017965\|Ga0190266_11197039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	526	Open in IMG/M
3300017974\|Ga0187777_10285386	Not Available	1126	Open in IMG/M
3300017974\|Ga0187777_10365271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	994	Open in IMG/M
3300017974\|Ga0187777_11033228	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300017974\|Ga0187777_11235429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300018027\|Ga0184605_10258598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	791	Open in IMG/M
3300018029\|Ga0187787_10079204	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300018060\|Ga0187765_10087947	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1671	Open in IMG/M
3300018433\|Ga0066667_10658932	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300019888\|Ga0193751_1027471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2713	Open in IMG/M
3300020069\|Ga0197907_10035658	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300020069\|Ga0197907_10121923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	919	Open in IMG/M
3300020069\|Ga0197907_10625606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	1202	Open in IMG/M
3300020070\|Ga0206356_11167665	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300020581\|Ga0210399_11032852	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300021344\|Ga0193719_10103187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	1240	Open in IMG/M
3300021432\|Ga0210384_11756790	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300021560\|Ga0126371_10860209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	1052	Open in IMG/M
3300021560\|Ga0126371_13589420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300021560\|Ga0126371_13663887	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300021953\|Ga0213880_10006885	All Organisms → cellular organisms → Bacteria	2196	Open in IMG/M
3300022532\|Ga0242655_10242872	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300022714\|Ga0242671_1103854	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300025939\|Ga0207665_11359347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	566	Open in IMG/M
3300026330\|Ga0209473_1045111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1941	Open in IMG/M
3300027869\|Ga0209579_10674793	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300027910\|Ga0209583_10754494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	513	Open in IMG/M
3300028773\|Ga0302234_10425912	Not Available	568	Open in IMG/M
3300029943\|Ga0311340_10200753	All Organisms → cellular organisms → Bacteria	2009	Open in IMG/M
3300029957\|Ga0265324_10216977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	650	Open in IMG/M
3300030524\|Ga0311357_10934327	Not Available	768	Open in IMG/M
3300031089\|Ga0102748_11352170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. ap11	553	Open in IMG/M
3300031251\|Ga0265327_10193235	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300031561\|Ga0318528_10377844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	761	Open in IMG/M
3300031720\|Ga0307469_11543163	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300031794\|Ga0318503_10194716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	657	Open in IMG/M
3300031912\|Ga0306921_12606177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300031962\|Ga0307479_11307541	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300032008\|Ga0318562_10757376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	557	Open in IMG/M
3300032067\|Ga0318524_10775935	Not Available	507	Open in IMG/M
3300032180\|Ga0307471_103145191	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300032770\|Ga0335085_10047148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5856	Open in IMG/M
3300032829\|Ga0335070_10273258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	1647	Open in IMG/M
3300032898\|Ga0335072_10963648	Not Available	789	Open in IMG/M
3300032955\|Ga0335076_10576184	Not Available	1008	Open in IMG/M
3300033004\|Ga0335084_10935152	Not Available	876	Open in IMG/M
3300033134\|Ga0335073_10659557	Not Available	1154	Open in IMG/M
3300034090\|Ga0326723_0299206	Not Available	722	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.85%
Host-Associated	Host-Associated	9.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.44%
Plants	Host-Associated → Plants	9.15%
Aquatic	Environmental → Aquatic	1.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.75%
Peat	Environmental → Terrestrial → Peat	2.82%
Sediment	Environmental → Aquatic → Sediment	1.41%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.41%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.15%
Loam	Environmental → Terrestrial → Soil → Loam	14.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.41%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.28%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.38%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.04%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.41%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.56%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.34%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.23%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.23%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.52%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.11%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.11%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.11%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.41%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.70%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.70%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.70%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.70%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.70%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.70%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029957	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG	Host-Associated	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031089	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1051078672	3300000956	Soil	MYRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRERPRPDRPDAA*
soilL2_101143211	3300003319	Sugarcane Root And Bulk Soil	MRRLYLVRPAKPTPVPYEKHAAKVIALRVRREARADVARVRRPDRPDAA*
Ga0062593_1012052921	3300004114	Soil	MYRLYLVRPVKPMPLPSEKRSAKVIELRVRREARRALRLAPRPDR
Ga0062589_1027455661	3300004156	Soil	GRALTTERRTRMHRLYLVRPAKPTPLPSEKRSAKVIELRVRREARRTLRERPRPDRPDAA
Ga0062590_1002928712	3300004157	Soil	MYRLYLVRPVKPMPLPSEKRSAKVIELRVRREARRALRLAPRPDRPDAA*
Ga0062590_1014058011	3300004157	Soil	RMHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRTLRERPRPDRPDAA*
Ga0062591_1001100554	3300004643	Soil	MHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRTLRERPRPDRPDAA*
Ga0062594_1001932922	3300005093	Soil	MYHLHLVRPVKASPLPSEKRSARVIDLRARREARRALRSLPRPDRPDAA*
Ga0066684_100205223	3300005179	Soil	MYRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRQAPRPHRPDAA*
Ga0066684_109433441	3300005179	Soil	MHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRAQRRAPRPDRPDAA*
Ga0066671_101361072	3300005184	Soil	MHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRRVPRPDRPDAA*
Ga0066675_101913522	3300005187	Soil	MHLHLVRPVKPMPLPSEKRSAKVIELRVRREARRALRERPRPDGPDAA*
Ga0066388_1001345924	3300005332	Tropical Forest Soil	MRRLYLVRPGKPTPPPHEQHAAKVIALRARRAARAEPVRVRRPDGPDAA*
Ga0066388_1002708592	3300005332	Tropical Forest Soil	MHRLYLVRPVKPEPLPSEKRSAKVIELRVRREAQRALREIPPRADRPDAA*
Ga0066388_1005507272	3300005332	Tropical Forest Soil	MHRLYLVRPVKPEPQPSEKYSAKVIELRVRREARREKRRILRPDRPDAA*
Ga0066388_1069731661	3300005332	Tropical Forest Soil	PVKPTPPPYEKHSAKVISLRARREARRDAWRVRQPDRPDAA*
Ga0070673_1024027462	3300005364	Switchgrass Rhizosphere	MFRMYLVRSVTPTPRPSEKHSAKVIELRVRREARRHLRLVPTPDRP
Ga0070709_116112642	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MHRLYLVRSVKPTPLPSEKRSAKVIELRVRQEARRDLQRRLRPDRPDAA*
Ga0070705_1017612321	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRERPRPDRPDAA*
Ga0070708_1008122762	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRLYLVRPDPRPRPEDRSAKVIQLRVRRELRLERRLPPRPDRPDAA*
Ga0066681_102453772	3300005451	Soil	MYRLYLVRPVKPMPLPSEKRSAKVIELRVRREARRALRRAPRSDRPDAA*
Ga0070698_1013479462	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MHRLHLVRPVKPTPPPYEKNSAKVIALRVRREARYDVRRASRPDRPDAA*
Ga0073909_105862271	3300005526	Surface Soil	MHRLYLVRSVTPTPRPSEKRSAKVIELRVRREARRQSQRVPQPDRPDAA*
Ga0070741_100305381	3300005529	Surface Soil	MRRLYLVRPVKPTPPPHEKHAAKVIELRARRAARTDLVRVRRSDRPDAA*
Ga0070741_104314952	3300005529	Surface Soil	MLVEASPPRRAPTIERKETRMQRLYLVRPVKSVPLPSEKRSAKVIELRVRREARRDARRPPRPDRPDAA*
Ga0070679_1016842992	3300005530	Corn Rhizosphere	MTRLYLVRSVTPTPRPSEKRSAKVIELRVRREARRERLRFLRPDRPDAA*
Ga0070739_102129422	3300005532	Surface Soil	MRRLYLVRPEKPTPPPREQHAAKVIALRARREARADLVRVRRFDGPDAA*
Ga0066697_103579072	3300005540	Soil	MHLHLVRPVKPMPLPSEKRSAKVIELRVRREARRALRRAPRSDRPDAA*
Ga0070695_1008332992	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MYRLYLVRPVKPMPLPSEKRSAKVIELRGRREARRAQRQAPRPDRPDAA*
Ga0070696_1006499403	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MHRLYLVRPVKPMPLPSEKRSAKVIELRVRREARRAQRQAPRPDRPDAA*
Ga0066670_104805272	3300005560	Soil	MHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRQAPRPHRPDAA*
Ga0066702_103751772	3300005575	Soil	MYRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALCRDPRPDRPDAA*
Ga0066708_109034511	3300005576	Soil	MYRLYLVRPVKSMPLPSEKRSAKVIELRVRREARRTLRRVPRPDRPDAA*
Ga0066706_105024702	3300005598	Soil	MYRLYLVRPVKPMPLPSEKRSAKVIELRVRREARRALRRVPRPDRPDAA*
Ga0070702_1016843581	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MFRLHLVRPVKPAPKPRDEHSAKVIELRARREARRAAQRARQFDRPDAA*
Ga0066905_1009707622	3300005713	Tropical Forest Soil	MHRLYLVRPVKPEPQPSEKYSAKVIELRVRREARREKRRILQSDRPDAA*
Ga0066903_1017337455	3300005764	Tropical Forest Soil	MYRLYLVRPAKSTPPSSMKRSAKVIELRVRREARRDAQRARRPDRPDAA*
Ga0066903_1018843743	3300005764	Tropical Forest Soil	MHGLYVVRSVKPSPLPSEKSSAKVISLRVRREARRQAVRPPRPDRPAAA*
Ga0066903_1060309412	3300005764	Tropical Forest Soil	MYRLYLVRPVRSTPRPSEKRSAKVIELRVRREARREASRHRRPHRPDAA*
Ga0066903_1061567613	3300005764	Tropical Forest Soil	MHRLYLVRPVKPEPQPSEKYSAKVIELRVRREARREKRRILRSDRPDAA*
Ga0066903_1078480661	3300005764	Tropical Forest Soil	REARPHNRKETRMHRLYLVRPVKPEPQPSEKYSAKVIELRIRREARREKRRILQSDRPDAA*
Ga0066652_1004853352	3300006046	Soil	MYRLYLVRPVKPMPLPSEKRSAKVIELRVRREARRARRRDPRPHRPDAA*
Ga0070716_1013238691	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	ERRTRMHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRELRRGLRPDRPDAA*
Ga0070765_1017750602	3300006176	Soil	MHRLYLVRSVKPTPRPSEKHSAKVIELRVRREARRQLRHVPEPERPDAA*
Ga0066659_111431632	3300006797	Soil	MYRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALCRDLRPDRPDAA*
Ga0066660_107174292	3300006800	Soil	MYRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRRAPRSDRPDAA*
Ga0079221_115063772	3300006804	Agricultural Soil	MYRLYLVRPVRNVPLPSEKRSAKVIELRVRREAREAARRPQPAPDRPRAA*
Ga0075433_107679381	3300006852	Populus Rhizosphere	TRMHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRERPRPDRPDAA*
Ga0075434_1001975842	3300006871	Populus Rhizosphere	MHRLYVVRSVKPSPQPSEKSSAKVIALRARQEARRQAMPQPRPDRPAAA*
Ga0075424_1009850361	3300006904	Populus Rhizosphere	VRPVKPTPRPNAKHSAKVIELRVRREARRDARRPRRPDRPDAA*
Ga0075435_1005424181	3300007076	Populus Rhizosphere	MQRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRERPRSDRPDAA*
Ga0066710_1005934382	3300009012	Grasslands Soil	MYRLYLVRPVKPMPLPSEKRSAKVIELRVRREARRALRERPRPDRPDAA
Ga0066710_1008865002	3300009012	Grasslands Soil	MHRLYLVRPAKPTPLPSEKRSAKVIELRVRREARRALRRAPRPDRPDAA
Ga0066709_1022457092	3300009137	Grasslands Soil	MHLHLVRPVKPMPLPSEKRSAKVIELRVRREARRALRERPRPDRPDAA*
Ga0126380_118337592	3300010043	Tropical Forest Soil	MHRLYLVRPVKPEPQPREKYSAKVIELRVRREARREKRRILRSDRPDAA*
Ga0134065_104309651	3300010326	Grasslands Soil	MYRLYLVRPVKAAPLPSEKRSAKVIALRVRREARRAALREPRPDR
Ga0134062_106638722	3300010337	Grasslands Soil	MFRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRRAPRSDRPDAA*
Ga0126376_102493321	3300010359	Tropical Forest Soil	RMYRLYLVRPVKPTPRPSELRSAKVIELRVRREARRDASRLPRTGRPGAA*
Ga0126376_124487322	3300010359	Tropical Forest Soil	MYRLYLVRPVRNEPLPSEKRSAKVIQLRARREAREAARRAQPAPDRPRAA*
Ga0126372_127248082	3300010360	Tropical Forest Soil	MHRLYLVQPVKPEPQPSEKYSAKVIELRVRREARREKRRILRSDRPDAA*
Ga0126381_1032366331	3300010376	Tropical Forest Soil	MYRVHLVRPVKAPPLPSEKRSAKVIELRARREARRQLRSLPRPDRPDAA*
Ga0134126_108164985	3300010396	Terrestrial Soil	VESVQRRAHNNRKETRMHRLYLVRPLKPSPLPSEKQSAKVIELRVRREQRRAPLRRLSRPDRPDAA*
Ga0134126_114647142	3300010396	Terrestrial Soil	MHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRELRRVPRPDRPDAA*
Ga0137383_106993502	3300012199	Vadose Zone Soil	MMHRLYLVRPVKPMPLPSEKRSAKVIELRVRREARRALRRAPRSDRPDAA*
Ga0137382_107888941	3300012200	Vadose Zone Soil	MYRLYLVRPVKPMPLRSEKRSAKVIELRVRREARRALRQAPRPHRPDAA*
Ga0137382_108060231	3300012200	Vadose Zone Soil	MYRVYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRQAPRPHRPDAA*
Ga0137363_114156822	3300012202	Vadose Zone Soil	MSRLYLVRSLTPTPQPREKHSAKVIVLRVRREARRDLRRSLQPDRPDAA*
Ga0137362_111323754	3300012205	Vadose Zone Soil	VRSVTPTPQPREKHSAKVIVLRVRREARRDLRRSLQPDRPDAA*
Ga0137381_107348502	3300012207	Vadose Zone Soil	MHRLYLVRPVKPMPLPSEKRSAKVIELRVRREARRALRRAPRSDRPDAA*
Ga0137376_111657291	3300012208	Vadose Zone Soil	RLYLVRPVKSMPLPSEKRSAKVIELRVRREARRALRSAPRSDRPDAA*
Ga0137378_102381282	3300012210	Vadose Zone Soil	MQRLYLVRSVTPTPQPREKRSAKVIELRVRREARRDLRRFLHPDRPDAA*
Ga0150985_1202645461	3300012212	Avena Fatua Rhizosphere	MYRLYLVRPVKPMPLPSEMRSAKVIELRVRREARRAQRRAPRPDRPDAA*
Ga0137386_113124052	3300012351	Vadose Zone Soil	LYLVRPVKPMPLPSEKRSAKVIELRVRREARRALRRAPRSDRPDAA*
Ga0137361_104186054	3300012362	Vadose Zone Soil	MSRLYLVRSVTPTPQPREKHSAKVIVLRVRREARRDLRRSLQPDRPDAA*
Ga0126375_103742452	3300012948	Tropical Forest Soil	MHRLYLVRPVKPEPLPSEKRSAKVIELRVRREARREKARILQSDRPDAA*
Ga0164298_109591171	3300012955	Soil	MYRLYLVRPVRNEPLPSEKHSAKVIQRRARREAREAERRAQPAPDRPRAA*
Ga0164299_106629322	3300012958	Soil	MYRLYLVRPVRNEPLPSEKHSAKVIQLRARREAREAERRAQPAPDR
Ga0164301_117001882	3300012960	Soil	GEAMYRLYLVRPVRNEPLPSEKHSAKVIQLRARREAREAERRAQPAPDRPRAA*
Ga0134110_100728314	3300012975	Grasslands Soil	MYRLYLVRPVKPMPQPSEKRSAKVIELRVRREARRALRRDPRPDRPDAA*
Ga0164309_114907602	3300012984	Soil	MYRLYLVRPERPTPPPSDKHSAKVIELRVRREAERALREAPPRPDRLDAA*
Ga0164306_106689982	3300012988	Soil	MYRLYLVRPVRNEPLPSEKRSAKVIELRVRREAREAARRPQPAPDRPRAA*
Ga0157370_102371623	3300013104	Corn Rhizosphere	MTRLYLVRSVTPTPHPSEKRSAKVIELRVRREARRERLRFLRPDRPDAA*
Ga0157369_114045043	3300013105	Corn Rhizosphere	MYRLYLVRPVRNVPLPSEKHSAKVIELRARREAREAARRPQPAPDRPRAA*
Ga0157372_111492083	3300013307	Corn Rhizosphere	VRSVKPTPLPSEKRSAKVIELRVRQEARRDLQRRLRPDRPDAA*
Ga0157377_111640471	3300014745	Miscanthus Rhizosphere	MYHLHLVRPVKASPLPSEKRSAKVIELQVRREARRALRQAPRPDRPDAA*
Ga0134072_100339711	3300015357	Grasslands Soil	MHLHLVRPVKPMPLTSEKRSAKVIELRVRREARRALRQAPRPHRPDAA*
Ga0132258_113398662	3300015371	Arabidopsis Rhizosphere	MHRLYLVRPVKPEPQPSEKRSAKVIELRVRREAQRALREAPPRPDRPDAA*
Ga0182041_118655561	3300016294	Soil	MYRLYLVRPVQPVPPPSEKHSAKVIELRVRREAREAARRPQPAPDRPRAA
Ga0134083_105936951	3300017659	Grasslands Soil	MYRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRRDPRPDRPEAA
Ga0187775_103631952	3300017939	Tropical Peatland	MRRLYLVRPVRPTPPPREQHAAKVIALRARRAARADLVRVRRSDGPDAA
Ga0187779_100311092	3300017959	Tropical Peatland	MHRLYLVRSVKSAPQPSEKRSAKVIALRARREARRDVRRHLVPDRPDAA
Ga0187779_104792432	3300017959	Tropical Peatland	MHSLYLVRSVKPAPRPSEKNSAKVIELRVRREVRRDARRPRRPDRPDAA
Ga0187779_107480682	3300017959	Tropical Peatland	MYRLYLVRPVQSAPLPSEKRSAKVIELRVRREAREAARRPQPAPDRPRAA
Ga0190266_111970392	3300017965	Soil	MYHLHLVRPVRPTPLPSEKHSAKVIELRVRREARRQLRLVRRPNRPDAA
Ga0187776_111242122	3300017966	Tropical Peatland	MRRLYLVRPVRPMPPPQEQHAAKVIALRARRAARADLVRVRRSDGPDAA
Ga0187777_102853862	3300017974	Tropical Peatland	MYHLHLVRPVKAELRSSEKRSAKVIHLQARREARRQLRSLPRADRPDAA
Ga0187777_103652712	3300017974	Tropical Peatland	MHRLYLVRSVKPAPRPSEKNSAKVIELRVRREVRRDARRPRRPDRPDAA
Ga0187777_110332281	3300017974	Tropical Peatland	MHRLYLVRSVKSAPQPSDKRSAKVIALRARREARLDVRRPRVPDRPDAA
Ga0187777_112354291	3300017974	Tropical Peatland	MFRLYLVRPVRNVPLPSEKHSAKVIQLRARREAREASLRPQPSPDRPRAA
Ga0184605_102585982	3300018027	Groundwater Sediment	MSRLYLVRPVKSTPLPSEKRSAKVIELRVRREARRALRREPRPDRPDAA
Ga0187787_100792045	3300018029	Tropical Peatland	MYRLHLVRPVKPSPLPSEKRSAKVIELCVRQEQRRDKRRVLHADRPDAA
Ga0187765_100879472	3300018060	Tropical Peatland	MHRLYLVRSVKSAPQPSEKRSAKVIALRARREARLDVRRPRVPDRPDAA
Ga0066667_106589321	3300018433	Grasslands Soil	MYRLYLVRPVKPMPLPSEKRSAKVIELRVRREARRALRQAPRPHRPDAA
Ga0193751_10274717	3300019888	Soil	MTRLYLVRSVTPTPQPSEKRSAKVIELRVRREVRRDLRRSLRPDRPDAA
Ga0197907_100356582	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MYRLYLVRPVRNVPLPSEKHSAKVIELRARREAREAARRPQPAPDRPRAA
Ga0197907_101219232	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MHRLYLVRSVKPTPLPSEKRSAKVIELRVRQEARRDLQRRLRPDRPDAA
Ga0197907_106256062	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MTRLYLVRSVTPTPHPSEKRSAKVIELRVRREARRERLRFLRPDRPDAA
Ga0206356_111676652	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MTRLYLVRSVTPTPRPSEKRSAKVIELRVRREARRERLRFLRPDRPDAA
Ga0210399_110328522	3300020581	Soil	MTRLYLVRSVTPTPKPSEKRSAKVIELRVRREARRERRRFLRPDRPDAA
Ga0193719_101031872	3300021344	Soil	MTRLYLVRSVKPTPQPREKRSAKVIELRVRREARRERLHSLQPDRPDAA
Ga0210384_117567901	3300021432	Soil	MHRLYLVRSVKPTPRPSEKHSAKVIELRVRREARRQLRHVPEPKRPDAA
Ga0126371_108602092	3300021560	Tropical Forest Soil	MYRLYLVRPVRNVPLPSEKRSAKVIELRVRREAREAALRAQPAPDRPRAA
Ga0126371_135894202	3300021560	Tropical Forest Soil	NRKETGMYRVHLVRPVEAPPLPSEKRSAKVIELRARREARRHLRSLPRPDRPDAA
Ga0126371_136638872	3300021560	Tropical Forest Soil	MYRLYLVRPAKSTPPPSMKRSAKVIELRVRREARRDAQRARRPDRPDAA
Ga0213880_100068855	3300021953	Exposed Rock	MQRLYLVRSVTPTPQPREHKAAKVIELRVKREARRVERRHPRPDRPDAA
Ga0242655_102428721	3300022532	Soil	MHRLYLVRSVKPTPRPSEKYSAKVIELRVRREARRQLRHVPEPKRPDAA
Ga0242671_11038541	3300022714	Soil	MYHLHLVWPQKPTPPQPNDKNSAKVIELRVRREARELRLPPRPKRP
Ga0207665_113593471	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LVRSVTPTPQPSEKRSAKVIELRVRREARRERLRFLHPDRPDAA
Ga0209473_10451112	3300026330	Soil	MYRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRQAPRPHRPDAA
Ga0209579_106747932	3300027869	Surface Soil	MYHLYLVRSVKPTPQPSDDQRSAKVIELRARREARRLLRQPRRPHRPDAA
Ga0209583_107544942	3300027910	Watersheds	MYHLYLVRSVKPTPRTSDQRSAKVIELRARREARRQLRQPRRPHRPDAA
Ga0302234_104259121	3300028773	Palsa	RLYLVRSVKPTPRPSEKYSAKVIELRVRREARRQLRRVPEPKRPDAA
Ga0311340_102007533	3300029943	Palsa	MHRLYLVRSVKPTPRPSEKYSAKVIELRVRREARRQLRRVPEPKRPDAA
Ga0265324_102169772	3300029957	Rhizosphere	MHRLYLVRPVRSTPLPSEKHSAKVIELRVRRETSRRLRLVPRPDRPDAA
Ga0311357_109343271	3300030524	Palsa	TGRRRARHHTTKGDQMHRLYLVRSVKPTPRPSEKYSAKVIELRVRREARRQLRRVPEPKRPDAA
Ga0102748_113521702	3300031089	Soil	MLYHLYLVRSVKPTPQPSDHRSAKVIELRARREARRLLRQPRRPHRPDAA
Ga0265327_101932352	3300031251	Rhizosphere	MIRLHLVRPVRNVPLPSEKRSAKVIVLQARREAREAARRPQPAPDRPRAA
Ga0318528_103778443	3300031561	Soil	MRRLYLVRPAKPSPPPYEKHSAKVISLRVRREARRDAWRALQPDRPDAA
Ga0307469_115431632	3300031720	Hardwood Forest Soil	MHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRALRERPRPDRPDAA
Ga0318503_101947163	3300031794	Soil	LVRPAKPSPPPYEKHSAKVISLRVRREARRDAWRALQPDRPDAA
Ga0306921_126061771	3300031912	Soil	EEIRMRRLYLVRPAKPSPPPYEKHSAKVISLRVRREARRDAWRALQPDRPDAA
Ga0307479_113075412	3300031962	Hardwood Forest Soil	MHRLYLVRSVKPTPPPRDKRSAKVIELRVRREARRDLRRSLHPDRPDAA
Ga0318562_107573762	3300032008	Soil	RKETGMYRVHLVRPVKAPPLPSEKRSAKVIELRARREARRQLRSHPRPDRPDAA
Ga0318524_107759351	3300032067	Soil	MRRLHLVRPAKPSPPPYEKHSAKVISLRVRREARRDAWRALQPDRPDAA
Ga0307471_1031451911	3300032180	Hardwood Forest Soil	MHRLYLVRPVKPTPLPSEKRSAKVIELRVRREARRTLRERPRPDRPDAA
Ga0335085_100471487	3300032770	Soil	MHRLYLVRPVRNVPLPSEKNSAKVIELRVRREAREAARRAQTAPDGPRAA
Ga0335070_102732585	3300032829	Soil	MHRLYLVRPVKSAPQPSATRSAKVIALRARREARRDVRRPLVPDRPDAA
Ga0335072_109636481	3300032898	Soil	MQHLYLVRTVTATPLPSEKNSAKVIALRIRREARRQAHRTPHPDRPAAA
Ga0335076_105761841	3300032955	Soil	MQHLYLVRMVTATPLPSEKNSAKVIALRIRREARRQAHRTPHPDRPAAA
Ga0335084_109351521	3300033004	Soil	MYHLHLVRPVKVAPRSSEKRSAKVIHLQARREERRQLRLLPRADRPDAA
Ga0335073_106595571	3300033134	Soil	QHLYLVRTVTATPLPSEKNSAKVIALRIRREARRQAHRTPHPDRPAAA
Ga0326723_0299206_189_338	3300034090	Peat Soil	MHRLYLVRSVRPEPREHEKRSAKVIELRVRREARNARLRPVPPRDRPAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F052788

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences